Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065143.t1 | RHN82421.1 | 95.5 | 382 | 15 | 1 | 1 | 382 | 1 | 380 | 2.20E-209 | 738 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065143.t1 | Q9C942 | 35.1 | 288 | 184 | 3 | 91 | 377 | 36 | 321 | 1.1e-44 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065143.t1 | A0A396K0S6 | 95.5 | 382 | 15 | 1 | 1 | 382 | 1 | 380 | 1.6e-209 | 738.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053561 | MS.gene065143 | 0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene055942 | MS.gene065143 | 0.845496 | 3.92E-59 | -1.69E-46 |
| MS.gene056761 | MS.gene065143 | 0.801192 | 1.01E-48 | -1.69E-46 |
| MS.gene059690 | MS.gene065143 | 0.840055 | 1.09E-57 | -1.69E-46 |
| MS.gene059691 | MS.gene065143 | 0.829506 | 4.95E-55 | -1.69E-46 |
| MS.gene059694 | MS.gene065143 | 0.832744 | 7.94E-56 | -1.69E-46 |
| MS.gene059697 | MS.gene065143 | 0.826824 | 2.19E-54 | -1.69E-46 |
| MS.gene060337 | MS.gene065143 | 0.809803 | 1.58E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065143 | MS.gene72606 | PPI |
| MS.gene93966 | MS.gene065143 | PPI |
| MS.gene022183 | MS.gene065143 | PPI |
| MS.gene042920 | MS.gene065143 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065143.t1 | MTR_1g110670 | 89.267 | 382 | 19 | 2 | 1 | 382 | 1 | 360 | 0.0 | 693 |
| MS.gene065143.t1 | MTR_5g056550 | 68.101 | 395 | 110 | 4 | 1 | 381 | 1 | 393 | 0.0 | 565 |
| MS.gene065143.t1 | MTR_5g056550 | 62.785 | 395 | 98 | 5 | 1 | 381 | 1 | 360 | 5.39e-180 | 504 |
| MS.gene065143.t1 | MTR_7g007260 | 58.308 | 331 | 137 | 1 | 47 | 377 | 7 | 336 | 2.13e-143 | 411 |
| MS.gene065143.t1 | MTR_6g018490 | 56.495 | 331 | 143 | 1 | 47 | 377 | 6 | 335 | 4.29e-141 | 405 |
| MS.gene065143.t1 | MTR_6g084420 | 53.892 | 334 | 152 | 2 | 45 | 377 | 4 | 336 | 1.77e-133 | 385 |
| MS.gene065143.t1 | MTR_7g007260 | 55.589 | 331 | 133 | 2 | 47 | 377 | 7 | 323 | 2.90e-131 | 379 |
| MS.gene065143.t1 | MTR_7g007260 | 55.723 | 332 | 132 | 3 | 47 | 377 | 7 | 324 | 2.44e-130 | 377 |
| MS.gene065143.t1 | MTR_6g025610 | 60.140 | 286 | 113 | 1 | 92 | 377 | 41 | 325 | 3.20e-127 | 369 |
| MS.gene065143.t1 | MTR_5g056550 | 63.710 | 248 | 74 | 4 | 1 | 234 | 1 | 246 | 4.42e-114 | 334 |
| MS.gene065143.t1 | MTR_5g056550 | 63.563 | 247 | 74 | 4 | 1 | 233 | 1 | 245 | 3.31e-113 | 330 |
| MS.gene065143.t1 | MTR_1g088470 | 45.614 | 285 | 154 | 1 | 95 | 379 | 8 | 291 | 6.17e-88 | 269 |
| MS.gene065143.t1 | MTR_7g108770 | 43.110 | 283 | 159 | 1 | 95 | 377 | 8 | 288 | 1.64e-85 | 263 |
| MS.gene065143.t1 | MTR_1g115535 | 41.414 | 297 | 173 | 1 | 84 | 380 | 3 | 298 | 1.74e-82 | 254 |
| MS.gene065143.t1 | MTR_1g115535 | 42.561 | 289 | 165 | 1 | 92 | 380 | 7 | 294 | 3.09e-82 | 254 |
| MS.gene065143.t1 | MTR_4g089170 | 38.851 | 296 | 170 | 1 | 96 | 380 | 29 | 324 | 1.15e-71 | 227 |
| MS.gene065143.t1 | MTR_1g095110 | 34.653 | 303 | 182 | 6 | 88 | 376 | 12 | 312 | 3.51e-55 | 184 |
| MS.gene065143.t1 | MTR_4g127220 | 37.050 | 278 | 173 | 2 | 106 | 382 | 41 | 317 | 4.10e-55 | 184 |
| MS.gene065143.t1 | MTR_1g110680 | 67.593 | 108 | 31 | 1 | 275 | 382 | 4 | 107 | 1.46e-40 | 139 |
| MS.gene065143.t1 | MTR_6g071475 | 35.069 | 288 | 177 | 8 | 93 | 379 | 112 | 390 | 2.10e-37 | 139 |
| MS.gene065143.t1 | MTR_3g109870 | 31.673 | 281 | 159 | 9 | 103 | 379 | 103 | 354 | 5.10e-31 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065143.t1 | AT1G77420 | 64.723 | 343 | 121 | 0 | 37 | 379 | 36 | 378 | 5.95e-168 | 474 |
| MS.gene065143.t1 | AT5G16120 | 58.055 | 329 | 137 | 1 | 49 | 377 | 10 | 337 | 4.63e-141 | 405 |
| MS.gene065143.t1 | AT5G16120 | 58.055 | 329 | 137 | 1 | 49 | 377 | 10 | 337 | 4.63e-141 | 405 |
| MS.gene065143.t1 | AT5G16120 | 58.055 | 329 | 137 | 1 | 49 | 377 | 28 | 355 | 8.91e-141 | 405 |
| MS.gene065143.t1 | AT5G16120 | 58.055 | 329 | 137 | 1 | 49 | 377 | 42 | 369 | 1.11e-140 | 405 |
| MS.gene065143.t1 | AT3G62860 | 41.053 | 285 | 166 | 1 | 95 | 379 | 9 | 291 | 2.16e-83 | 258 |
| MS.gene065143.t1 | AT2G39420 | 43.448 | 290 | 163 | 1 | 92 | 381 | 8 | 296 | 6.47e-83 | 256 |
| MS.gene065143.t1 | AT2G47630 | 42.456 | 285 | 164 | 0 | 95 | 379 | 9 | 293 | 9.44e-83 | 256 |
| MS.gene065143.t1 | AT2G39410 | 44.792 | 288 | 158 | 1 | 92 | 379 | 8 | 294 | 1.60e-82 | 254 |
| MS.gene065143.t1 | AT1G11090 | 43.793 | 290 | 163 | 0 | 91 | 380 | 26 | 315 | 1.91e-81 | 252 |
| MS.gene065143.t1 | AT3G55180 | 42.414 | 290 | 167 | 0 | 92 | 381 | 2 | 291 | 1.04e-78 | 245 |
| MS.gene065143.t1 | AT2G39400 | 41.034 | 290 | 170 | 1 | 92 | 381 | 2 | 290 | 1.01e-75 | 237 |
| MS.gene065143.t1 | AT3G62860 | 41.463 | 246 | 144 | 0 | 134 | 379 | 3 | 248 | 7.39e-72 | 227 |
| MS.gene065143.t1 | AT2G47630 | 43.404 | 235 | 133 | 0 | 145 | 379 | 14 | 248 | 5.55e-68 | 217 |
| MS.gene065143.t1 | AT2G47630 | 43.038 | 237 | 135 | 0 | 145 | 381 | 34 | 270 | 7.09e-68 | 217 |
| MS.gene065143.t1 | AT3G55190 | 38.328 | 287 | 175 | 2 | 96 | 381 | 12 | 297 | 1.64e-65 | 211 |
| MS.gene065143.t1 | AT5G14980 | 34.982 | 283 | 181 | 3 | 98 | 379 | 35 | 315 | 4.54e-59 | 194 |
| MS.gene065143.t1 | AT5G19290 | 34.982 | 283 | 182 | 2 | 101 | 382 | 38 | 319 | 2.73e-56 | 187 |
| MS.gene065143.t1 | AT1G52760 | 34.828 | 290 | 181 | 3 | 100 | 382 | 38 | 326 | 3.65e-54 | 182 |
| MS.gene065143.t1 | AT2G39400 | 38.462 | 221 | 135 | 1 | 92 | 312 | 2 | 221 | 1.15e-49 | 167 |
| MS.gene065143.t1 | AT5G11650 | 34.663 | 326 | 186 | 11 | 63 | 376 | 65 | 375 | 1.19e-41 | 150 |
| MS.gene065143.t1 | AT1G73480 | 34.155 | 284 | 167 | 9 | 103 | 380 | 194 | 463 | 3.18e-39 | 145 |
| MS.gene065143.t1 | AT1G18360 | 34.164 | 281 | 172 | 6 | 103 | 380 | 112 | 382 | 5.40e-38 | 140 |
| MS.gene065143.t1 | AT5G11650 | 31.707 | 246 | 142 | 9 | 63 | 295 | 65 | 297 | 8.38e-21 | 92.0 |
| MS.gene065143.t1 | AT2G39410 | 41.935 | 93 | 53 | 1 | 95 | 187 | 11 | 102 | 9.53e-21 | 87.4 |
Find 80 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1.2:+81935921 | MS.gene065143:CDS |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1.2:+81936031 | MS.gene065143:CDS |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1.2:+81934318 | MS.gene065143:CDS |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1.2:-81934261 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1.2:-81936085 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1.2:+81934452 | MS.gene065143:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1.2:-81935924 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1.2:+81934969 | MS.gene065143:CDS |
| AGAACCCGGCAAAAGAAAAT+TGG | 0.363276 | 1.2:+81935593 | MS.gene065143:CDS |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1.2:-81935966 | None:intergenic |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1.2:-81935977 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1.2:+81934958 | MS.gene065143:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1.2:+81935002 | MS.gene065143:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1.2:+81936096 | MS.gene065143:CDS |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1.2:+81933394 | MS.gene065143:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1.2:-81933440 | None:intergenic |
| TGCGGCAAATCCCTCACCTT+TGG | 0.403243 | 1.2:-81934946 | None:intergenic |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1.2:-81936062 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1.2:-81935027 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1.2:+81935016 | MS.gene065143:CDS |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1.2:-81933432 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1.2:+81934215 | MS.gene065143:CDS |
| AACACCTTCAAAATTGTAGT+TGG | 0.442279 | 1.2:-81935498 | None:intergenic |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1.2:-81933426 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1.2:+81933618 | MS.gene065143:CDS |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1.2:+81934264 | MS.gene065143:CDS |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1.2:+81934265 | MS.gene065143:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1.2:-81934464 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1.2:+81935017 | MS.gene065143:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1.2:+81934464 | MS.gene065143:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1.2:+81935050 | MS.gene065143:CDS |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1.2:+81935738 | MS.gene065143:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1.2:-81933433 | None:intergenic |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1.2:-81933512 | None:intergenic |
| CTATAATAGACTGCACCTGC+TGG | 0.486422 | 1.2:+81933755 | MS.gene065143:intron |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1.2:-81933542 | None:intergenic |
| TTTCTTTGCATTCACTCTCA+GGG | 0.492030 | 1.2:-81933482 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1.2:-81935561 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1.2:+81934199 | MS.gene065143:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1.2:+81934970 | MS.gene065143:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1.2:+81934473 | MS.gene065143:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1.2:-81933439 | None:intergenic |
| ACCTTCAAAATTGTAGTTGG+CGG | 0.515776 | 1.2:-81935495 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1.2:+81934446 | MS.gene065143:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1.2:-81933558 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1.2:+81934436 | MS.gene065143:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1.2:-81935050 | None:intergenic |
| TCTTGAGTTATGATCCCAGC+AGG | 0.541950 | 1.2:-81933770 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1.2:+81934208 | MS.gene065143:intron |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1.2:-81934503 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1.2:+81935935 | MS.gene065143:CDS |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1.2:+81935548 | MS.gene065143:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.558672 | 1.2:+81935465 | MS.gene065143:intron |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1.2:+81934399 | MS.gene065143:intron |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1.2:+81936011 | MS.gene065143:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1.2:+81935743 | MS.gene065143:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1.2:+81935782 | MS.gene065143:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1.2:+81934209 | MS.gene065143:intron |
| TATAATAGACTGCACCTGCT+GGG | 0.586633 | 1.2:+81933756 | MS.gene065143:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1.2:+81935788 | MS.gene065143:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1.2:+81936023 | MS.gene065143:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1.2:+81935527 | MS.gene065143:CDS |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1.2:+81936084 | MS.gene065143:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1.2:+81934249 | MS.gene065143:CDS |
| GACAGCTAGACCAAAGGTGA+GGG | 0.610250 | 1.2:+81934936 | MS.gene065143:intron |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1.2:-81935778 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1.2:+81935021 | MS.gene065143:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1.2:-81934964 | None:intergenic |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1.2:-81934463 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1.2:-81933380 | None:intergenic |
| TACATTGACAGCTAGACCAA+AGG | 0.622635 | 1.2:+81934930 | MS.gene065143:intron |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1.2:+81934973 | MS.gene065143:CDS |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1.2:-81935060 | None:intergenic |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1.2:-81936040 | None:intergenic |
| TGACAGCTAGACCAAAGGTG+AGG | 0.653411 | 1.2:+81934935 | MS.gene065143:intron |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1.2:-81933571 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1.2:-81933596 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1.2:+81934210 | MS.gene065143:CDS |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1.2:+81936014 | MS.gene065143:CDS |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1.2:+81934266 | MS.gene065143:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAGCTATAGTAT+AGG | - | chr1.2:81935864-81935883 | None:intergenic | 15.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | + | chr1.2:81935355-81935374 | MS.gene065143:intron | 20.0% |
| !! | AGAACTTATGAAAACATATT+AGG | - | chr1.2:81934065-81934084 | None:intergenic | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | chr1.2:81934536-81934555 | MS.gene065143:CDS | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | + | chr1.2:81935354-81935373 | MS.gene065143:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | chr1.2:81935893-81935912 | MS.gene065143:intron | 20.0% |
| !!! | AAATGAAGGTTAGTTTAAAA+AGG | + | chr1.2:81934673-81934692 | MS.gene065143:intron | 20.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | chr1.2:81933450-81933469 | None:intergenic | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | chr1.2:81934389-81934408 | MS.gene065143:intron | 20.0% |
| !!! | TATGAAATAAAAAAAGTGTG+AGG | - | chr1.2:81933663-81933682 | None:intergenic | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | chr1.2:81934544-81934563 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | chr1.2:81934180-81934199 | MS.gene065143:intron | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | chr1.2:81933457-81933476 | None:intergenic | 20.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | chr1.2:81934088-81934107 | None:intergenic | 25.0% |
| ! | AAGGAAAATAGAGAAAATGA+AGG | + | chr1.2:81934659-81934678 | MS.gene065143:intron | 25.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | chr1.2:81933618-81933637 | MS.gene065143:CDS | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | chr1.2:81934152-81934171 | None:intergenic | 25.0% |
| ! | ATAAGTCCTATGATTCTTAA+TGG | - | chr1.2:81933688-81933707 | None:intergenic | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | - | chr1.2:81934567-81934586 | None:intergenic | 25.0% |
| ! | CATATTCCATTAAGAATCAT+AGG | + | chr1.2:81933679-81933698 | MS.gene065143:intron | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | chr1.2:81934730-81934749 | None:intergenic | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | - | chr1.2:81935679-81935698 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | + | chr1.2:81935362-81935381 | MS.gene065143:intron | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | chr1.2:81934089-81934108 | None:intergenic | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | chr1.2:81935166-81935185 | MS.gene065143:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | chr1.2:81933921-81933940 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | - | chr1.2:81935361-81935380 | None:intergenic | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | chr1.2:81935386-81935405 | MS.gene065143:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | chr1.2:81935339-81935358 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | chr1.2:81935689-81935708 | MS.gene065143:intron | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | chr1.2:81934190-81934209 | MS.gene065143:intron | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | chr1.2:81934728-81934747 | MS.gene065143:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | chr1.2:81935612-81935631 | MS.gene065143:intron | 25.0% |
| AACACCTTCAAAATTGTAGT+TGG | - | chr1.2:81935501-81935520 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | + | chr1.2:81933499-81933518 | MS.gene065143:CDS | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | chr1.2:81936011-81936030 | MS.gene065143:CDS | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | - | chr1.2:81936065-81936084 | None:intergenic | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | chr1.2:81934363-81934382 | MS.gene065143:intron | 30.0% | |
| ATGCTGTGTAAAAAACTACA+AGG | + | chr1.2:81934640-81934659 | MS.gene065143:intron | 30.0% | |
| ATGCTTTCTCATAAAGAAAC+TGG | - | chr1.2:81935980-81935999 | None:intergenic | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | chr1.2:81934969-81934988 | MS.gene065143:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | chr1.2:81935016-81935035 | MS.gene065143:CDS | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | chr1.2:81934153-81934172 | None:intergenic | 30.0% | |
| CTAGAGAGTTATCAAATTTG+AGG | + | chr1.2:81934359-81934378 | MS.gene065143:intron | 30.0% | |
| GATATTGGATTATGGTGTAA+GGG | - | chr1.2:81933442-81933461 | None:intergenic | 30.0% | |
| GATTTGCCGCAATTTATATT+CGG | + | chr1.2:81934958-81934977 | MS.gene065143:CDS | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | - | chr1.2:81933922-81933941 | None:intergenic | 30.0% | |
| TCAAACAAGAACAACAAATC+AGG | - | chr1.2:81935449-81935468 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | chr1.2:81935231-81935250 | None:intergenic | 30.0% | |
| TCGACTAAATCATCAAAACT+TGG | - | chr1.2:81934506-81934525 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | - | chr1.2:81933443-81933462 | None:intergenic | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | chr1.2:81935162-81935181 | None:intergenic | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | chr1.2:81934970-81934989 | MS.gene065143:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | chr1.2:81935017-81935036 | MS.gene065143:CDS | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | chr1.2:81934399-81934418 | MS.gene065143:intron | 30.0% |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | chr1.2:81935242-81935261 | MS.gene065143:intron | 30.0% |
| ! | TTTCTTTGTTTGCGTTTCAT+TGG | + | chr1.2:81933726-81933745 | MS.gene065143:intron | 30.0% |
| !! | GAAGGTTAGTTTAAAAAGGA+TGG | + | chr1.2:81934677-81934696 | MS.gene065143:intron | 30.0% |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | chr1.2:81935546-81935565 | None:intergenic | 30.0% |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | chr1.2:81934291-81934310 | MS.gene065143:CDS | 30.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | chr1.2:81933411-81933430 | None:intergenic | 30.0% |
| AAAAACAAAGCCCCTTTGAT+TGG | - | chr1.2:81934279-81934298 | None:intergenic | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | chr1.2:81935063-81935082 | None:intergenic | 35.0% | |
| ACACTAAAGATCTATGAAGG+AGG | + | chr1.2:81936014-81936033 | MS.gene065143:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | chr1.2:81936088-81936107 | None:intergenic | 35.0% | |
| ACCTTCAAAATTGTAGTTGG+CGG | - | chr1.2:81935498-81935517 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | chr1.2:81934318-81934337 | MS.gene065143:CDS | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | chr1.2:81934208-81934227 | MS.gene065143:intron | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | chr1.2:81935564-81935583 | None:intergenic | 35.0% | |
| AGTTGTATTAGCACATCTGT+TGG | + | chr1.2:81935417-81935436 | MS.gene065143:intron | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | - | chr1.2:81934594-81934613 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | chr1.2:81933545-81933564 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | chr1.2:81934967-81934986 | None:intergenic | 35.0% | |
| GATCAAACACGATTAAGAAC+TGG | + | chr1.2:81935738-81935757 | MS.gene065143:CDS | 35.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | - | chr1.2:81933435-81933454 | None:intergenic | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | chr1.2:81935921-81935940 | MS.gene065143:CDS | 35.0% | |
| GGCAAAACTATTTCCATACA+AGG | + | chr1.2:81935548-81935567 | MS.gene065143:CDS | 35.0% | |
| GGTTTATCTGAAGGATTACA+TGG | + | chr1.2:81934473-81934492 | MS.gene065143:CDS | 35.0% | |
| GTAGCACAAATGTTTATGTC+AGG | - | chr1.2:81933951-81933970 | None:intergenic | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | chr1.2:81934919-81934938 | None:intergenic | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | chr1.2:81934209-81934228 | MS.gene065143:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | chr1.2:81935475-81935494 | None:intergenic | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | chr1.2:81935782-81935801 | MS.gene065143:CDS | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | chr1.2:81936096-81936115 | MS.gene065143:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | chr1.2:81936084-81936103 | MS.gene065143:CDS | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | chr1.2:81935002-81935021 | MS.gene065143:CDS | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | chr1.2:81934210-81934229 | MS.gene065143:CDS | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | chr1.2:81935465-81935484 | MS.gene065143:intron | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | chr1.2:81934199-81934218 | MS.gene065143:intron | 35.0% | |
| TTTCTTTGCATTCACTCTCA+GGG | - | chr1.2:81933485-81933504 | None:intergenic | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | chr1.2:81935824-81935843 | MS.gene065143:intron | 35.0% | |
| ! | ACCAACCAATTTTCTTTTGC+CGG | - | chr1.2:81935601-81935620 | None:intergenic | 35.0% |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | chr1.2:81934356-81934375 | None:intergenic | 35.0% |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | chr1.2:81935527-81935546 | MS.gene065143:CDS | 35.0% |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | chr1.2:81935927-81935946 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | chr1.2:81935328-81935347 | MS.gene065143:intron | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | chr1.2:81935969-81935988 | None:intergenic | 35.0% |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | chr1.2:81935224-81935243 | None:intergenic | 35.0% |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | chr1.2:81935659-81935678 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | chr1.2:81935225-81935244 | None:intergenic | 35.0% |
| ! | TTTTCTTTGCATTCACTCTC+AGG | - | chr1.2:81933486-81933505 | None:intergenic | 35.0% |
| !! | GGTTAGTTTAAAAAGGATGG+AGG | + | chr1.2:81934680-81934699 | MS.gene065143:intron | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | chr1.2:81934436-81934455 | MS.gene065143:CDS | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | chr1.2:81934422-81934441 | MS.gene065143:CDS | 35.0% |
| AACACGATTAAGAACTGGCA+TGG | + | chr1.2:81935743-81935762 | MS.gene065143:CDS | 40.0% | |
| AACATGGCGTTCCAATCAAA+GGG | + | chr1.2:81934265-81934284 | MS.gene065143:CDS | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | chr1.2:81935021-81935040 | MS.gene065143:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | chr1.2:81935935-81935954 | MS.gene065143:CDS | 40.0% | |
| AGAACCCGGCAAAAGAAAAT+TGG | + | chr1.2:81935593-81935612 | MS.gene065143:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | chr1.2:81936023-81936042 | MS.gene065143:CDS | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | chr1.2:81935086-81935105 | None:intergenic | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | chr1.2:81935781-81935800 | None:intergenic | 40.0% | |
| CTTCAGATAAACCGAAACCT+GGG | - | chr1.2:81934466-81934485 | None:intergenic | 40.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | - | chr1.2:81933436-81933455 | None:intergenic | 40.0% | |
| TACATTGACAGCTAGACCAA+AGG | + | chr1.2:81934930-81934949 | MS.gene065143:intron | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | chr1.2:81933756-81933775 | MS.gene065143:intron | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | chr1.2:81935788-81935807 | MS.gene065143:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | chr1.2:81935081-81935100 | None:intergenic | 40.0% | |
| TGAAAGGAATTCAAGGGGAT+TGG | + | chr1.2:81934215-81934234 | MS.gene065143:CDS | 40.0% | |
| ! | ACCGCCAACTACAATTTTGA+AGG | + | chr1.2:81935494-81935513 | MS.gene065143:CDS | 40.0% |
| ! | ATTTTCTTTTGCCGGGTTCT+CGG | - | chr1.2:81935593-81935612 | None:intergenic | 40.0% |
| ! | CCAACCAATTTTCTTTTGCC+GGG | - | chr1.2:81935600-81935619 | None:intergenic | 40.0% |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | chr1.2:81934446-81934465 | MS.gene065143:CDS | 40.0% |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | chr1.2:81934235-81934254 | MS.gene065143:CDS | 40.0% |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | chr1.2:81934143-81934162 | None:intergenic | 40.0% |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | chr1.2:81935579-81935598 | MS.gene065143:CDS | 40.0% |
| AAAAGCTGGATGCCAGAACA+TGG | + | chr1.2:81934249-81934268 | MS.gene065143:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | chr1.2:81934266-81934285 | MS.gene065143:CDS | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | chr1.2:81934973-81934992 | MS.gene065143:CDS | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | chr1.2:81933394-81933413 | MS.gene065143:CDS | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | - | chr1.2:81935030-81935049 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | chr1.2:81934464-81934483 | MS.gene065143:CDS | 45.0% | |
| CCCGGCAAAAGAAAATTGGT+TGG | + | chr1.2:81935597-81935616 | MS.gene065143:intron | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | chr1.2:81935053-81935072 | None:intergenic | 45.0% | |
| CCTTCAGATAAACCGAAACC+TGG | - | chr1.2:81934467-81934486 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | chr1.2:81935050-81935069 | MS.gene065143:CDS | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | chr1.2:81933755-81933774 | MS.gene065143:intron | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | chr1.2:81933515-81933534 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | chr1.2:81934264-81934283 | MS.gene065143:CDS | 45.0% | |
| GCACGATGATGAGTATAGCA+AGG | + | chr1.2:81933830-81933849 | MS.gene065143:intron | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | - | chr1.2:81933429-81933448 | None:intergenic | 45.0% | |
| GTTCACCTTCCAAAATGCCA+TGG | - | chr1.2:81936043-81936062 | None:intergenic | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | chr1.2:81933773-81933792 | None:intergenic | 45.0% | |
| TGAGTATAGCAAGGCATGCT+TGG | + | chr1.2:81933839-81933858 | MS.gene065143:intron | 45.0% | |
| TGTCGAACATGTCTACGAGA+AGG | - | chr1.2:81933574-81933593 | None:intergenic | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | chr1.2:81934264-81934283 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | chr1.2:81933599-81933618 | None:intergenic | 45.0% | |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | chr1.2:81936031-81936050 | MS.gene065143:CDS | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | chr1.2:81934452-81934471 | MS.gene065143:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | chr1.2:81936035-81936054 | MS.gene065143:CDS | 45.0% |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | chr1.2:81933561-81933580 | None:intergenic | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | chr1.2:81934416-81934435 | MS.gene065143:CDS | 45.0% |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | chr1.2:81934285-81934304 | MS.gene065143:CDS | 45.0% |
| GACAGCTAGACCAAAGGTGA+GGG | + | chr1.2:81934936-81934955 | MS.gene065143:intron | 50.0% | |
| TGACAGCTAGACCAAAGGTG+AGG | + | chr1.2:81934935-81934954 | MS.gene065143:intron | 50.0% | |
| TGCGGCAAATCCCTCACCTT+TGG | - | chr1.2:81934949-81934968 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 81933382 | 81936130 | 81933382 | ID=MS.gene065143 |
| chr1.2 | mRNA | 81933382 | 81936130 | 81933382 | ID=MS.gene065143.t1;Parent=MS.gene065143 |
| chr1.2 | exon | 81933382 | 81933639 | 81933382 | ID=MS.gene065143.t1.exon1;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81933382 | 81933639 | 81933382 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81933764 | 81933793 | 81933764 | ID=MS.gene065143.t1.exon2;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81933764 | 81933793 | 81933764 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81934210 | 81934339 | 81934210 | ID=MS.gene065143.t1.exon3;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81934210 | 81934339 | 81934210 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81934411 | 81934557 | 81934411 | ID=MS.gene065143.t1.exon4;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81934411 | 81934557 | 81934411 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81934941 | 81935071 | 81934941 | ID=MS.gene065143.t1.exon5;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81934941 | 81935071 | 81934941 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81935477 | 81935614 | 81935477 | ID=MS.gene065143.t1.exon6;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81935477 | 81935614 | 81935477 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81935711 | 81935809 | 81935711 | ID=MS.gene065143.t1.exon7;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81935711 | 81935809 | 81935711 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| chr1.2 | exon | 81935915 | 81936130 | 81935915 | ID=MS.gene065143.t1.exon8;Parent=MS.gene065143.t1 |
| chr1.2 | CDS | 81935915 | 81936130 | 81935915 | ID=cds.MS.gene065143.t1;Parent=MS.gene065143.t1 |
| Gene Sequence |
| Protein sequence |
