Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065152.t1 | XP_003592638.2 | 99.5 | 790 | 4 | 0 | 11 | 800 | 5 | 794 | 0.00E+00 | 1598.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065152.t1 | P52780 | 86.8 | 786 | 103 | 1 | 15 | 800 | 10 | 794 | 0.0e+00 | 1402.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065152.t1 | G7ICA2 | 99.5 | 790 | 4 | 0 | 11 | 800 | 5 | 794 | 0.0e+00 | 1598.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052307 | MS.gene065152 | 0.814278 | 1.67E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene065152 | 0.83666 | 8.22E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene065152 | 0.810226 | 1.28E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene065152 | 0.807085 | 6.00E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene065152 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene065152 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene065152 | 0.835317 | 1.80E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065152 | MS.gene68406 | PPI |
| MS.gene065152 | MS.gene031761 | PPI |
| MS.gene065152 | MS.gene030099 | PPI |
| MS.gene26848 | MS.gene065152 | PPI |
| MS.gene065152 | MS.gene037771 | PPI |
| MS.gene80766 | MS.gene065152 | PPI |
| MS.gene065152 | MS.gene065875 | PPI |
| MS.gene065152 | MS.gene061256 | PPI |
| MS.gene052373 | MS.gene065152 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065152.t1 | MTR_1g110430 | 99.494 | 790 | 4 | 0 | 11 | 800 | 5 | 794 | 0.0 | 1627 |
| MS.gene065152.t1 | MTR_1g085150 | 32.271 | 502 | 323 | 7 | 275 | 775 | 225 | 710 | 2.16e-67 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065152.t1 | AT1G25350 | 76.239 | 787 | 184 | 2 | 17 | 800 | 9 | 795 | 0.0 | 1264 |
| MS.gene065152.t1 | AT1G25350 | 74.747 | 792 | 192 | 3 | 17 | 800 | 9 | 800 | 0.0 | 1241 |
| MS.gene065152.t1 | AT5G26710 | 33.665 | 502 | 316 | 9 | 275 | 775 | 212 | 697 | 1.13e-70 | 246 |
| MS.gene065152.t1 | AT5G19720 | 56.923 | 195 | 58 | 2 | 607 | 800 | 1 | 170 | 9.03e-68 | 222 |
| MS.gene065152.t1 | AT1G68325 | 58.904 | 73 | 23 | 1 | 727 | 799 | 31 | 96 | 6.43e-22 | 91.3 |
Find 175 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGCGATGTTTATTGATTT+TGG | 0.078301 | 1.2:+81805194 | MS.gene065152:intron |
| ATAACTTCAGTGCACTTTAT+AGG | 0.185994 | 1.2:-81812629 | None:intergenic |
| AGATTCAATGATTCTGAAAT+TGG | 0.239159 | 1.2:-81807160 | None:intergenic |
| TGAAGTATTTGAGGAGAATA+AGG | 0.245021 | 1.2:+81803924 | MS.gene065152:CDS |
| CCTTATTGCATATCGAATTA+AGG | 0.252842 | 1.2:+81807276 | MS.gene065152:CDS |
| TATAATTTACCGTGTAAATA+AGG | 0.262860 | 1.2:-81802558 | None:intergenic |
| ATGAGACTATTCTTGAAATT+CGG | 0.263391 | 1.2:+81812666 | MS.gene065152:CDS |
| CCTAATGGATATTTGCATAT+TGG | 0.298235 | 1.2:+81805073 | MS.gene065152:CDS |
| CTATAGTAAGGGTGGAAAAT+AGG | 0.314797 | 1.2:+81813297 | MS.gene065152:CDS |
| TGAGACTATTCTTGAAATTC+GGG | 0.346853 | 1.2:+81812667 | MS.gene065152:CDS |
| AGAATAGTACCATCGCTAAA+AGG | 0.349411 | 1.2:-81804968 | None:intergenic |
| CCTTAATTCGATATGCAATA+AGG | 0.350425 | 1.2:-81807276 | None:intergenic |
| CGGCTAAATCATACAATTCA+TGG | 0.350426 | 1.2:-81806653 | None:intergenic |
| CTGAGGAGATAAAGGAGTAT+AGG | 0.353345 | 1.2:+81807104 | MS.gene065152:CDS |
| CGGTTTCCTCCCGAGCCTAA+TGG | 0.353730 | 1.2:+81805058 | MS.gene065152:CDS |
| TGAGGAGATAAAGGAGTATA+GGG | 0.362415 | 1.2:+81807105 | MS.gene065152:CDS |
| TTGAAGTCAGGCTGTTTGAT+AGG | 0.371366 | 1.2:+81812865 | MS.gene065152:CDS |
| TTGATAGGGTGTTCTCCATT+GGG | 0.373984 | 1.2:+81812806 | MS.gene065152:intron |
| GGATCATCAGCTTGGGCATC+AGG | 0.376841 | 1.2:-81811237 | None:intergenic |
| CGCGCCGTGCTTCATACTAT+TGG | 0.385788 | 1.2:+81808098 | MS.gene065152:CDS |
| ATTGATAGGGTGTTCTCCAT+TGG | 0.386993 | 1.2:+81812805 | MS.gene065152:intron |
| GTATTTACCAACCTTATGTA+TGG | 0.387845 | 1.2:+81808137 | MS.gene065152:CDS |
| GAGGTAATTCCAAATGCATT+TGG | 0.388200 | 1.2:+81813054 | MS.gene065152:CDS |
| TATTGGTTGTTGCATGCATT+AGG | 0.389406 | 1.2:+81808115 | MS.gene065152:CDS |
| TGATGACATTAGCTGGTTTA+CGG | 0.390710 | 1.2:+81808357 | MS.gene065152:CDS |
| TTGTGCTTATGTTGATCATC+AGG | 0.392938 | 1.2:+81806695 | MS.gene065152:CDS |
| CTTCCCTAACATGATATTCA+AGG | 0.397704 | 1.2:-81811030 | None:intergenic |
| AATGGATTGAGATCTTCTTC+TGG | 0.398450 | 1.2:-81804490 | None:intergenic |
| AATATATACAACGTTGGAAA+AGG | 0.399492 | 1.2:-81812445 | None:intergenic |
| CATTACCTAATCTTTCAAAC+TGG | 0.409686 | 1.2:-81813116 | None:intergenic |
| TGCAAAATTATATGAGCTAC+TGG | 0.410648 | 1.2:+81804274 | MS.gene065152:CDS |
| AAAGATTCAAAAGATTATTA+CGG | 0.410890 | 1.2:+81812489 | MS.gene065152:CDS |
| AGCTGTTAATGAAGTATTTG+AGG | 0.411819 | 1.2:+81803915 | MS.gene065152:CDS |
| AATAAGGTTTCCAACAGTTC+GGG | 0.413362 | 1.2:-81802542 | None:intergenic |
| AAATAAGGTTTCCAACAGTT+CGG | 0.414367 | 1.2:-81802543 | None:intergenic |
| TTACTAGTTGGTGAGTTACT+TGG | 0.414784 | 1.2:+81804095 | MS.gene065152:intron |
| CACTCCGTGATGCAAAAGTT+GGG | 0.415700 | 1.2:+81813085 | MS.gene065152:CDS |
| ACCGCATCGACCAACATTGC+TGG | 0.416551 | 1.2:+81803124 | MS.gene065152:CDS |
| GAGGGCAGACCAAATGCATT+TGG | 0.419936 | 1.2:-81813063 | None:intergenic |
| ACTATCATTTCTTGCCAATA+CGG | 0.420572 | 1.2:+81803393 | MS.gene065152:CDS |
| GTCGCCTTGAATATCATGTT+AGG | 0.427051 | 1.2:+81811026 | MS.gene065152:CDS |
| GTAGACACCTGAGGAGATAA+AGG | 0.427662 | 1.2:+81807096 | MS.gene065152:intron |
| CTATACTCCTTTATCTCCTC+AGG | 0.428879 | 1.2:-81807103 | None:intergenic |
| CGATGCGGTAAGGCATTTCC+AGG | 0.432226 | 1.2:-81803110 | None:intergenic |
| GACAAGCATTTGAAAGCAAC+AGG | 0.432915 | 1.2:+81805019 | MS.gene065152:CDS |
| CTTGAATATTCCCATACATA+AGG | 0.434106 | 1.2:-81808148 | None:intergenic |
| AGTTTCCAGTTTGAAAGATT+AGG | 0.434602 | 1.2:+81813111 | MS.gene065152:CDS |
| ACGTGCGAAAGAGGCTTCCA+TGG | 0.435748 | 1.2:+81804120 | MS.gene065152:CDS |
| CTTCAAATTTATTCACATCC+AGG | 0.441234 | 1.2:-81803426 | None:intergenic |
| GATTATTACGGCCTTGCTCC+TGG | 0.443530 | 1.2:+81812501 | MS.gene065152:CDS |
| CCAATATGCAAATATCCATT+AGG | 0.445438 | 1.2:-81805073 | None:intergenic |
| AAACTCACCTCTACTTTAGC+AGG | 0.448864 | 1.2:-81804350 | None:intergenic |
| ATCCTGCCGAACTTGACAAT+TGG | 0.449418 | 1.2:+81813004 | MS.gene065152:CDS |
| CTTATGTATGGGAATATTCA+AGG | 0.450934 | 1.2:+81808149 | MS.gene065152:CDS |
| TCCATTGAAGCTTAATCGCC+TGG | 0.452017 | 1.2:+81808295 | MS.gene065152:intron |
| TTTGAAGAAGCGTGTGGAGT+TGG | 0.453075 | 1.2:+81803442 | MS.gene065152:CDS |
| TCACTCCGTGATGCAAAAGT+TGG | 0.455130 | 1.2:+81813084 | MS.gene065152:CDS |
| GTGGATAACGGCGGTGAGAT+TGG | 0.455593 | 1.2:-81802494 | None:intergenic |
| CAGTGAGCATAATCATAACT+TGG | 0.456666 | 1.2:-81807415 | None:intergenic |
| AAAGATAACCAACCTCTGAT+AGG | 0.457491 | 1.2:-81812893 | None:intergenic |
| TAACAGAACTGTCACATTGA+AGG | 0.458470 | 1.2:+81813270 | MS.gene065152:CDS |
| GAACTACGCTATCGAACAAA+TGG | 0.464729 | 1.2:+81803958 | MS.gene065152:CDS |
| ATCCATTGAAGGTTGAAGTC+AGG | 0.465275 | 1.2:+81812853 | MS.gene065152:CDS |
| ATTGAAGGACAGCTATAGTA+AGG | 0.465317 | 1.2:+81813285 | MS.gene065152:CDS |
| GCCAAGCCAATTGTCAAGTT+CGG | 0.467361 | 1.2:-81813010 | None:intergenic |
| AATGAGAAAGTAAACAAGAA+TGG | 0.468168 | 1.2:-81802224 | None:intergenic |
| AGCCTGACTTCAACCTTCAA+TGG | 0.471327 | 1.2:-81812855 | None:intergenic |
| ATGAGAAAGTAAACAAGAAT+GGG | 0.472854 | 1.2:-81802223 | None:intergenic |
| GTTACCGAAAAGTGGGTTGA+TGG | 0.476547 | 1.2:+81808317 | MS.gene065152:CDS |
| CTATCATTTCTTGCCAATAC+GGG | 0.481213 | 1.2:+81803394 | MS.gene065152:CDS |
| CCTCGCCTGATGACATTAGC+TGG | 0.482367 | 1.2:+81808350 | MS.gene065152:CDS |
| TACTTGGGCACGTGCGAAAG+AGG | 0.484463 | 1.2:+81804111 | MS.gene065152:CDS |
| GAAATTGGTCTGTCCCTCCA+TGG | 0.485714 | 1.2:-81807145 | None:intergenic |
| GCCGAACTTGACAATTGGCT+TGG | 0.487061 | 1.2:+81813009 | MS.gene065152:CDS |
| AGCCAATTGTCAAGTTCGGC+AGG | 0.490419 | 1.2:-81813006 | None:intergenic |
| AATGGATCAACTTCATGAGC+AGG | 0.491526 | 1.2:-81812837 | None:intergenic |
| AACGGCAGCCTCGTGGATAA+CGG | 0.493801 | 1.2:-81802506 | None:intergenic |
| TGATAGGCTGTTCCTATCAG+AGG | 0.496046 | 1.2:+81812881 | MS.gene065152:CDS |
| TGAAGAAATTGTCCAGTGGA+TGG | 0.496361 | 1.2:+81806515 | MS.gene065152:CDS |
| GGTGACTTTGTTATTAGCAA+TGG | 0.497008 | 1.2:-81802470 | None:intergenic |
| TGCAAATATCCATTAGGCTC+GGG | 0.498380 | 1.2:-81805067 | None:intergenic |
| AGCAGATGGATCATCAGCTT+GGG | 0.498557 | 1.2:-81811244 | None:intergenic |
| TGAAGCTAACTCAACAATTG+AGG | 0.500307 | 1.2:+81811197 | MS.gene065152:CDS |
| ATATATACAACGTTGGAAAA+GGG | 0.501618 | 1.2:-81812444 | None:intergenic |
| GTAAACCAGCTAATGTCATC+AGG | 0.504398 | 1.2:-81808355 | None:intergenic |
| TACTAGTTGGTGAGTTACTT+GGG | 0.509631 | 1.2:+81804096 | MS.gene065152:intron |
| TTTACTCCGCACCCTCATGC+TGG | 0.516515 | 1.2:+81807373 | MS.gene065152:CDS |
| CTGAGTATCGCAGATTTGCC+AGG | 0.517883 | 1.2:-81812519 | None:intergenic |
| AAGCAGATGGATCATCAGCT+TGG | 0.520046 | 1.2:-81811245 | None:intergenic |
| TCATGAAGTTGATCCATTGA+AGG | 0.520442 | 1.2:+81812842 | MS.gene065152:CDS |
| ATCGCCTGGTTACCGAAAAG+TGG | 0.520705 | 1.2:+81808309 | MS.gene065152:CDS |
| TTGTCTCCAGCATGAGGGTG+CGG | 0.520931 | 1.2:-81807379 | None:intergenic |
| TAGCTGGTTTACGGCGTAGA+GGG | 0.525572 | 1.2:+81808366 | MS.gene065152:CDS |
| GAGGAATTGGAATCACTAGA+AGG | 0.525621 | 1.2:+81808420 | MS.gene065152:CDS |
| ACCCTCATGCTGGAGACAAA+TGG | 0.525756 | 1.2:+81807383 | MS.gene065152:CDS |
| ATGGTTTCCATCCCATCCAC+TGG | 0.525936 | 1.2:-81806527 | None:intergenic |
| CAATGTTGGTCGATGCGGTA+AGG | 0.527243 | 1.2:-81803120 | None:intergenic |
| ATGCAAATATCCATTAGGCT+CGG | 0.528175 | 1.2:-81805068 | None:intergenic |
| AACAGTTCGGGTGCAGCCAT+CGG | 0.529593 | 1.2:-81802530 | None:intergenic |
| CGTTGTATATATTGAACGTA+CGG | 0.530723 | 1.2:+81812455 | MS.gene065152:CDS |
| GATGGCTGCACCCGAACTGT+TGG | 0.531877 | 1.2:+81802532 | MS.gene065152:CDS |
| TCGGGTGCAGCCATCGGTAA+CGG | 0.532486 | 1.2:-81802524 | None:intergenic |
| TAGTCCAGAGGAAAATTTGA+AGG | 0.536130 | 1.2:+81804525 | MS.gene065152:CDS |
| AGAAGAAATTGAACAGTCCA+TGG | 0.538575 | 1.2:+81807128 | MS.gene065152:CDS |
| AATATTCCCATACATAAGGT+TGG | 0.540298 | 1.2:-81808144 | None:intergenic |
| TATTTACCAACCTTATGTAT+GGG | 0.540656 | 1.2:+81808138 | MS.gene065152:CDS |
| TCGCCTTGAATATCATGTTA+GGG | 0.540818 | 1.2:+81811027 | MS.gene065152:CDS |
| CAAAACAGCTCCTCGAACAA+TGG | 0.541666 | 1.2:+81811060 | MS.gene065152:CDS |
| CGAAAAGTGGGTTGATGGGT+GGG | 0.548227 | 1.2:+81808322 | MS.gene065152:CDS |
| AGACGTGGTCTTGTAGAAGA+AGG | 0.551914 | 1.2:+81807196 | MS.gene065152:CDS |
| ACAACATATTCCAGCAATGT+TGG | 0.552257 | 1.2:-81803134 | None:intergenic |
| CTGGCAAATCTGCGATACTC+AGG | 0.553968 | 1.2:+81812520 | MS.gene065152:CDS |
| CACTGTTATGTCGAAGCGCA+AGG | 0.554048 | 1.2:+81808186 | MS.gene065152:CDS |
| CCGAAAAGTGGGTTGATGGG+TGG | 0.554800 | 1.2:+81808321 | MS.gene065152:CDS |
| CACGAGGCTGCCGTTACCGA+TGG | 0.559303 | 1.2:+81802514 | MS.gene065152:CDS |
| CAATACGGGTTCAGAAAACC+TGG | 0.559949 | 1.2:+81803408 | MS.gene065152:CDS |
| GGTTGTCTTGCACCCACTCA+AGG | 0.560414 | 1.2:+81811081 | MS.gene065152:CDS |
| GGCTGATGCAAAAGCTGTCA+AGG | 0.561646 | 1.2:+81804142 | MS.gene065152:CDS |
| TGTTGGAAACCTTATTTACA+CGG | 0.564262 | 1.2:+81802549 | MS.gene065152:CDS |
| TCTGAACCCTCATTCAAAAG+AGG | 0.564421 | 1.2:+81813035 | MS.gene065152:CDS |
| GGATTGAGATCTTCTTCTGG+TGG | 0.565763 | 1.2:-81804487 | None:intergenic |
| CGTGCGAAAGAGGCTTCCAT+GGG | 0.566216 | 1.2:+81804121 | MS.gene065152:CDS |
| AACAGACAAAATACCTTGAG+TGG | 0.566641 | 1.2:-81811094 | None:intergenic |
| GATGGGATGGAAACCATTCA+AGG | 0.570675 | 1.2:+81806533 | MS.gene065152:CDS |
| ATTACCTTGTAGAAAGCAGA+TGG | 0.572394 | 1.2:-81811258 | None:intergenic |
| TCCAGCAATGTTGGTCGATG+CGG | 0.576314 | 1.2:-81803125 | None:intergenic |
| TGATCCATCTGCTTTCTACA+AGG | 0.576675 | 1.2:+81811254 | MS.gene065152:CDS |
| TGCAAGACAACCATTGTTCG+AGG | 0.578367 | 1.2:-81811070 | None:intergenic |
| CACCATTTGTCTCCAGCATG+AGG | 0.578697 | 1.2:-81807385 | None:intergenic |
| GAAGGAAGATATCTTAGAGA+AGG | 0.581067 | 1.2:+81802390 | MS.gene065152:intron |
| TGATATATGTGCAGGTGTTG+AGG | 0.586897 | 1.2:+81803870 | MS.gene065152:intron |
| TCGCCTGGTTACCGAAAAGT+GGG | 0.588105 | 1.2:+81808310 | MS.gene065152:CDS |
| GAGCAGGTTGTGCAACCCAA+TGG | 0.588412 | 1.2:-81812821 | None:intergenic |
| TTACCGAAAAGTGGGTTGAT+GGG | 0.590330 | 1.2:+81808318 | MS.gene065152:CDS |
| GGAATATGTTGTTTCATCCA+AGG | 0.591177 | 1.2:+81803145 | MS.gene065152:CDS |
| AAATTGTCCAGTGGATGGGA+TGG | 0.593412 | 1.2:+81806520 | MS.gene065152:CDS |
| TTTGCATATTGGTCATGCCA+AGG | 0.597648 | 1.2:+81805084 | MS.gene065152:CDS |
| TCGCAGATTTGCCAGGAGCA+AGG | 0.603339 | 1.2:-81812512 | None:intergenic |
| GCCGTGGAGCTCATAAGAAG+AGG | 0.606247 | 1.2:+81806672 | MS.gene065152:CDS |
| AAGGACAGCTATAGTAAGGG+TGG | 0.606859 | 1.2:+81813289 | MS.gene065152:CDS |
| GTCTTGCTTCATTCGCAGTG+TGG | 0.607399 | 1.2:-81807224 | None:intergenic |
| GAAGAAATTGTCCAGTGGAT+GGG | 0.608057 | 1.2:+81806516 | MS.gene065152:CDS |
| AGAGAAACCTGCTAAAGTAG+AGG | 0.608147 | 1.2:+81804343 | MS.gene065152:CDS |
| GAAATTGAACAGTCCATGGA+GGG | 0.611407 | 1.2:+81807132 | MS.gene065152:CDS |
| AATAAATTTGAAGAAGCGTG+TGG | 0.620386 | 1.2:+81803436 | MS.gene065152:CDS |
| TTTGATATTCCCTAGTCCAG+AGG | 0.621334 | 1.2:+81804513 | MS.gene065152:CDS |
| AGTGAGCATAATCATAACTT+GGG | 0.623564 | 1.2:-81807414 | None:intergenic |
| GGGTTGGCAAAAGACAGAGA+TGG | 0.630895 | 1.2:+81805215 | MS.gene065152:CDS |
| AAGCATTTGAAAGCAACAGG+TGG | 0.630979 | 1.2:+81805022 | MS.gene065152:CDS |
| ACCATTTGTCTCCAGCATGA+GGG | 0.632136 | 1.2:-81807384 | None:intergenic |
| GAGATGGAGGTTGCTACCTG+AGG | 0.632641 | 1.2:+81805231 | MS.gene065152:CDS |
| CAGGTTGCAACAAAATACCC+TGG | 0.634042 | 1.2:+81803092 | MS.gene065152:intron |
| ACTCCGTGATGCAAAAGTTG+GGG | 0.634974 | 1.2:+81813086 | MS.gene065152:CDS |
| AGCATTTGAAAGCAACAGGT+GGG | 0.637401 | 1.2:+81805023 | MS.gene065152:CDS |
| CATCGGTAACGGCAGCCTCG+TGG | 0.638213 | 1.2:-81802513 | None:intergenic |
| ACCTCTTCTTATGAGCTCCA+CGG | 0.641721 | 1.2:-81806673 | None:intergenic |
| AAATATCCATTAGGCTCGGG+AGG | 0.644834 | 1.2:-81805064 | None:intergenic |
| CCAGCTAATGTCATCAGGCG+AGG | 0.651747 | 1.2:-81808350 | None:intergenic |
| ACAACCAATAGTATGAAGCA+CGG | 0.653300 | 1.2:-81808102 | None:intergenic |
| TTGGCAAAAGACAGAGATGG+AGG | 0.655596 | 1.2:+81805218 | MS.gene065152:CDS |
| TTGAAGGACAGCTATAGTAA+GGG | 0.656111 | 1.2:+81813286 | MS.gene065152:CDS |
| ACAGACAAAATACCTTGAGT+GGG | 0.656269 | 1.2:-81811093 | None:intergenic |
| GATAACGGCGGTGAGATTGG+TGG | 0.656822 | 1.2:-81802491 | None:intergenic |
| TTAGCTGGTTTACGGCGTAG+AGG | 0.660909 | 1.2:+81808365 | MS.gene065152:CDS |
| TGAATTGTATGATTTAGCCG+TGG | 0.661708 | 1.2:+81806656 | MS.gene065152:CDS |
| TGATTATGCTCACTGCATCG+TGG | 0.676182 | 1.2:+81807423 | MS.gene065152:CDS |
| AGAAATTGAACAGTCCATGG+AGG | 0.677303 | 1.2:+81807131 | MS.gene065152:CDS |
| ACGTTCAATATATACAACGT+TGG | 0.685014 | 1.2:-81812451 | None:intergenic |
| ATCATTGCAGGTGAAAACAA+CGG | 0.687951 | 1.2:+81803354 | MS.gene065152:intron |
| GATGCGGTAAGGCATTTCCA+GGG | 0.696093 | 1.2:-81803109 | None:intergenic |
| ACATTGAAGAAATTGTCCAG+TGG | 0.705711 | 1.2:+81806511 | MS.gene065152:CDS |
| GGCAGCCTCGTGGATAACGG+CGG | 0.708962 | 1.2:-81802503 | None:intergenic |
| GCAAAATTATATGAGCTACT+GGG | 0.716316 | 1.2:+81804275 | MS.gene065152:CDS |
| TCTCACCGCCGTTATCCACG+AGG | 0.734573 | 1.2:+81802498 | MS.gene065152:CDS |
| GATTTGGTTGTAGACACCTG+AGG | 0.739238 | 1.2:+81807087 | MS.gene065152:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 81802219 | 81813318 | 81802219 | ID=MS.gene065152 |
| chr1.2 | mRNA | 81802219 | 81813318 | 81802219 | ID=MS.gene065152.t1;Parent=MS.gene065152 |
| chr1.2 | exon | 81802219 | 81802248 | 81802219 | ID=MS.gene065152.t1.exon1;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81802219 | 81802248 | 81802219 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81802394 | 81802570 | 81802394 | ID=MS.gene065152.t1.exon2;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81802394 | 81802570 | 81802394 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81803095 | 81803166 | 81803095 | ID=MS.gene065152.t1.exon3;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81803095 | 81803166 | 81803095 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81803364 | 81803463 | 81803364 | ID=MS.gene065152.t1.exon4;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81803364 | 81803463 | 81803364 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81803884 | 81803979 | 81803884 | ID=MS.gene065152.t1.exon5;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81803884 | 81803979 | 81803884 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81804102 | 81804163 | 81804102 | ID=MS.gene065152.t1.exon6;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81804102 | 81804163 | 81804102 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81804263 | 81804364 | 81804263 | ID=MS.gene065152.t1.exon7;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81804263 | 81804364 | 81804263 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81804454 | 81804546 | 81804454 | ID=MS.gene065152.t1.exon8;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81804454 | 81804546 | 81804454 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81804953 | 81805105 | 81804953 | ID=MS.gene065152.t1.exon9;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81804953 | 81805105 | 81804953 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81805197 | 81805252 | 81805197 | ID=MS.gene065152.t1.exon10;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81805197 | 81805252 | 81805197 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81806464 | 81806554 | 81806464 | ID=MS.gene065152.t1.exon11;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81806464 | 81806554 | 81806464 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81806630 | 81806716 | 81806630 | ID=MS.gene065152.t1.exon12;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81806630 | 81806716 | 81806630 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81807100 | 81807297 | 81807100 | ID=MS.gene065152.t1.exon13;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81807100 | 81807297 | 81807100 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81807373 | 81807471 | 81807373 | ID=MS.gene065152.t1.exon14;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81807373 | 81807471 | 81807373 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81808076 | 81808207 | 81808076 | ID=MS.gene065152.t1.exon15;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81808076 | 81808207 | 81808076 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81808305 | 81808441 | 81808305 | ID=MS.gene065152.t1.exon16;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81808305 | 81808441 | 81808305 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81811003 | 81811102 | 81811003 | ID=MS.gene065152.t1.exon17;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81811003 | 81811102 | 81811003 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81811180 | 81811275 | 81811180 | ID=MS.gene065152.t1.exon18;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81811180 | 81811275 | 81811180 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81812441 | 81812541 | 81812441 | ID=MS.gene065152.t1.exon19;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81812441 | 81812541 | 81812441 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81812619 | 81812724 | 81812619 | ID=MS.gene065152.t1.exon20;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81812619 | 81812724 | 81812619 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81812813 | 81812902 | 81812813 | ID=MS.gene065152.t1.exon21;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81812813 | 81812902 | 81812813 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81813003 | 81813132 | 81813003 | ID=MS.gene065152.t1.exon22;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81813003 | 81813132 | 81813003 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| chr1.2 | exon | 81813224 | 81813318 | 81813224 | ID=MS.gene065152.t1.exon23;Parent=MS.gene065152.t1 |
| chr1.2 | CDS | 81813224 | 81813318 | 81813224 | ID=cds.MS.gene065152.t1;Parent=MS.gene065152.t1 |
| Gene Sequence |
| Protein sequence |
