Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065158.t1 | XP_024627490.1 | 93.9 | 277 | 13 | 2 | 1 | 273 | 1 | 277 | 2.30E-128 | 468.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065158.t1 | Q9C9H1 | 41.4 | 273 | 97 | 9 | 14 | 258 | 7 | 244 | 8.7e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065158.t1 | A0A396JYU9 | 93.5 | 277 | 14 | 2 | 1 | 273 | 41 | 317 | 8.2e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene065158 | -0.802781 | 4.77E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene065158 | -0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene065158 | -0.817527 | 3.15E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene065158 | -0.807766 | 4.31E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene065158 | -0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene053776 | MS.gene065158 | 0.828884 | 7.01E-55 | -1.69E-46 |
| MS.gene055956 | MS.gene065158 | 0.815299 | 9.92E-52 | -1.69E-46 |
| MS.gene056664 | MS.gene065158 | -0.816037 | 6.80E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene065158 | 0.801198 | 1.01E-48 | -1.69E-46 |
| MS.gene056903 | MS.gene065158 | -0.809276 | 2.05E-50 | -1.69E-46 |
| MS.gene057246 | MS.gene065158 | -0.826911 | 2.09E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene065158 | -0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene065158 | -0.821318 | 4.30E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene065158 | -0.804628 | 1.97E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065158.t1 | MTR_1g054450 | 39.423 | 104 | 52 | 2 | 22 | 121 | 36 | 132 | 6.98e-14 | 70.1 |
| MS.gene065158.t1 | MTR_1g107055 | 36.893 | 103 | 51 | 3 | 51 | 147 | 48 | 142 | 4.93e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065158.t1 | AT1G68360 | 45.693 | 267 | 94 | 12 | 14 | 258 | 7 | 244 | 5.00e-49 | 162 |
| MS.gene065158.t1 | AT1G67030 | 37.795 | 254 | 84 | 11 | 17 | 255 | 3 | 197 | 4.70e-29 | 109 |
| MS.gene065158.t1 | AT5G06650 | 35.537 | 121 | 50 | 4 | 6 | 123 | 4 | 99 | 1.00e-13 | 68.6 |
| MS.gene065158.t1 | AT1G10480 | 59.322 | 59 | 21 | 1 | 75 | 130 | 58 | 116 | 8.42e-11 | 60.8 |
Find 94 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCAATGCATCATCAAAAT+TGG | 0.179721 | 1.2:-81732013 | None:intergenic |
| CAAACTCTCTGCAACAATAT+TGG | 0.281348 | 1.2:-81731534 | None:intergenic |
| CAAACACACCTTAAGCTCTT+TGG | 0.292603 | 1.2:+81731352 | MS.gene065158:CDS |
| TTCCAGCTTCTCCATCCTCT+TGG | 0.307319 | 1.2:+81731731 | MS.gene065158:CDS |
| CTTGCATGGTTTCGTCTTCA+TGG | 0.316436 | 1.2:-81731384 | None:intergenic |
| GAACGGAGGTGGAGCGGAAC+GGG | 0.320728 | 1.2:-81731767 | None:intergenic |
| TATTCTAGATGCTCCCCTTA+AGG | 0.322916 | 1.2:+81732099 | MS.gene065158:CDS |
| TTTCCATGTGTTGGCGTTGT+AGG | 0.332361 | 1.2:+81731898 | MS.gene065158:CDS |
| TTAAGGTGTGTTTGAGAAGT+TGG | 0.362018 | 1.2:-81731343 | None:intergenic |
| TCCAGCTTCTCCATCCTCTT+GGG | 0.365799 | 1.2:+81731732 | MS.gene065158:CDS |
| ATTCTAGATGCTCCCCTTAA+GGG | 0.383821 | 1.2:+81732100 | MS.gene065158:CDS |
| GGAGCAAAGGCGGAGATGAT+AGG | 0.396063 | 1.2:-81731670 | None:intergenic |
| AACATGGCCCATGGTGGGCC+CGG | 0.409999 | 1.2:-81731960 | None:intergenic |
| TAAGGTGTGTTTGAGAAGTT+GGG | 0.412002 | 1.2:-81731342 | None:intergenic |
| TTCCATGTGTTGGCGTTGTA+GGG | 0.420815 | 1.2:+81731899 | MS.gene065158:CDS |
| GGTGGAAGAAGAAGTTGTTT+TGG | 0.429259 | 1.2:-81731428 | None:intergenic |
| AGCTGAAGCCAAAGAGCTTA+AGG | 0.432010 | 1.2:-81731360 | None:intergenic |
| GTTCAGGCCCGGGCCCACCA+TGG | 0.432395 | 1.2:+81731952 | MS.gene065158:CDS |
| ACCCAAGAGGATGGAGAAGC+TGG | 0.434339 | 1.2:-81731733 | None:intergenic |
| CAACGATGCAGGTTCAGGCC+CGG | 0.442634 | 1.2:+81731941 | MS.gene065158:CDS |
| GAGGAGTCCGGTGATCTTGA+TGG | 0.447464 | 1.2:-81731460 | None:intergenic |
| CCCAATGCATCATCAAAATT+GGG | 0.454376 | 1.2:-81732012 | None:intergenic |
| AGGTTCTCAAAAGGTGATAG+TGG | 0.454672 | 1.2:+81731988 | MS.gene065158:CDS |
| AACGATGCAGGTTCAGGCCC+GGG | 0.471103 | 1.2:+81731942 | MS.gene065158:CDS |
| TTCAGGCCCGGGCCCACCAT+GGG | 0.478470 | 1.2:+81731953 | MS.gene065158:CDS |
| CCGCGTGATCGATTTGCAGC+TGG | 0.478980 | 1.2:-81732060 | None:intergenic |
| GAAACTTTCCCACCTTCCTC+CGG | 0.479593 | 1.2:+81731493 | MS.gene065158:CDS |
| AACGGAGGTGGAGCGGAACG+GGG | 0.490444 | 1.2:-81731766 | None:intergenic |
| GCAGGGATGTTTCCATGTGT+TGG | 0.492883 | 1.2:+81731889 | MS.gene065158:CDS |
| ACATGGCCCATGGTGGGCCC+GGG | 0.493537 | 1.2:-81731959 | None:intergenic |
| TGGGAAAGTTTCATTGATAC+CGG | 0.494673 | 1.2:-81731482 | None:intergenic |
| TGGTGTTTCCGTTCCCCGAC+GGG | 0.496296 | 1.2:-81731819 | None:intergenic |
| ATTGTCAACGATGCAGGTTC+AGG | 0.506548 | 1.2:+81731936 | MS.gene065158:CDS |
| ATTATTACCACTACTCATCA+TGG | 0.508504 | 1.2:-81731839 | None:intergenic |
| TTGCAGCTGGTGCAAGACTA+AGG | 0.511842 | 1.2:-81732047 | None:intergenic |
| TTTGCAAATTCACAAGCCCT+TGG | 0.516251 | 1.2:+81731553 | MS.gene065158:CDS |
| TGCAAATCGATCACGCGGCT+CGG | 0.525860 | 1.2:+81732065 | MS.gene065158:CDS |
| GGAACGGAGGTGGAGCGGAA+CGG | 0.528625 | 1.2:-81731768 | None:intergenic |
| GAGCAAAGGCGGAGATGATA+GGG | 0.532052 | 1.2:-81731669 | None:intergenic |
| TTCTTTCACCGGAGGAAGGT+GGG | 0.532446 | 1.2:-81731501 | None:intergenic |
| TCAAGATCACCGGACTCCTC+CGG | 0.535820 | 1.2:+81731463 | MS.gene065158:CDS |
| ATGGTGAAACCTGTGGGTGC+AGG | 0.536780 | 1.2:+81731871 | MS.gene065158:CDS |
| TGTTTGAGTAGGTTCTCAAA+AGG | 0.539077 | 1.2:+81731979 | MS.gene065158:CDS |
| TCCCCTACAACGCCAACACA+TGG | 0.539605 | 1.2:-81731901 | None:intergenic |
| ACTGAGACGTGGAACGGAGG+TGG | 0.546611 | 1.2:-81731778 | None:intergenic |
| GCAAATTCACAAGCCCTTGG+TGG | 0.546856 | 1.2:+81731556 | MS.gene065158:CDS |
| GATGATAGGGTTTCGAACGA+AGG | 0.546963 | 1.2:-81731656 | None:intergenic |
| GTCCACATTGTCAACGATGC+AGG | 0.547644 | 1.2:+81731930 | MS.gene065158:CDS |
| CAACACTTGCTAGCTCCGCC+AGG | 0.549780 | 1.2:+81731697 | MS.gene065158:CDS |
| TGGAGAAGCTGGAACCATCA+TGG | 0.549915 | 1.2:-81731722 | None:intergenic |
| ATGGTGTTTCCGTTCCCCGA+CGG | 0.552673 | 1.2:-81731820 | None:intergenic |
| TTTCTTTCACCGGAGGAAGG+TGG | 0.552851 | 1.2:-81731502 | None:intergenic |
| TCATTGATACCGGAGGAGTC+CGG | 0.553341 | 1.2:-81731472 | None:intergenic |
| AACTTCACCATCAAGATCAC+CGG | 0.555887 | 1.2:+81731453 | MS.gene065158:CDS |
| ATCATGGTGGTTGTTATCCA+TGG | 0.559893 | 1.2:-81731296 | None:intergenic |
| CATATATATTAGCCCTTAAG+GGG | 0.564486 | 1.2:-81732112 | None:intergenic |
| TGAGTCTTGAATATCTTGCA+TGG | 0.566556 | 1.2:-81731398 | None:intergenic |
| TCACGCGGCTCGGCTCAGCT+TGG | 0.573416 | 1.2:+81732075 | MS.gene065158:CDS |
| CAAGTGTTGTGGAGGAGCAA+AGG | 0.574993 | 1.2:-81731683 | None:intergenic |
| AGCTCCGCCAGGTTCCATGA+TGG | 0.576000 | 1.2:+81731708 | MS.gene065158:CDS |
| GCTGGAACCATCATGGAACC+TGG | 0.577317 | 1.2:-81731715 | None:intergenic |
| ACCATGGGCCATGTTTGAGT+AGG | 0.580256 | 1.2:+81731968 | MS.gene065158:CDS |
| GACGTGGAACGGAGGTGGAG+CGG | 0.596260 | 1.2:-81731773 | None:intergenic |
| GGCGGAGCTAGCAAGTGTTG+TGG | 0.596639 | 1.2:-81731694 | None:intergenic |
| TGGTGAAACCTGTGGGTGCA+GGG | 0.607912 | 1.2:+81731872 | MS.gene065158:CDS |
| TACTCAAACATGGCCCATGG+TGG | 0.612291 | 1.2:-81731966 | None:intergenic |
| GGTTCTCAAAAGGTGATAGT+GGG | 0.613425 | 1.2:+81731989 | MS.gene065158:CDS |
| GGAGGTGGAGCGGAACGGGG+CGG | 0.613641 | 1.2:-81731763 | None:intergenic |
| TCTTGATGGTGAAGTTGAGG+TGG | 0.613832 | 1.2:-81731446 | None:intergenic |
| GGAAACATCCCTGCACCCAC+AGG | 0.615006 | 1.2:-81731880 | None:intergenic |
| ACTCAAACATGGCCCATGGT+GGG | 0.619213 | 1.2:-81731965 | None:intergenic |
| GGAACGTAAACCCAAGAGGA+TGG | 0.619759 | 1.2:-81731742 | None:intergenic |
| CCAGCTGCAAATCGATCACG+CGG | 0.620703 | 1.2:+81732060 | MS.gene065158:CDS |
| TCCATGTGTTGGCGTTGTAG+GGG | 0.626322 | 1.2:+81731900 | MS.gene065158:CDS |
| ACCTACTCAAACATGGCCCA+TGG | 0.626992 | 1.2:-81731969 | None:intergenic |
| TGGTAATAATAATAGTAACA+TGG | 0.627271 | 1.2:+81731852 | MS.gene065158:CDS |
| GGAGCTAGCAAGTGTTGTGG+AGG | 0.629961 | 1.2:-81731691 | None:intergenic |
| TGATCTTGATGGTGAAGTTG+AGG | 0.632741 | 1.2:-81731449 | None:intergenic |
| TTTGAGAACCTACTCAAACA+TGG | 0.644123 | 1.2:-81731976 | None:intergenic |
| TGTGAAACTGAGACGTGGAA+CGG | 0.644837 | 1.2:-81731784 | None:intergenic |
| GTGTTGTGGAGGAGCAAAGG+CGG | 0.649831 | 1.2:-81731680 | None:intergenic |
| AACCTGCATCGTTGACAATG+TGG | 0.656511 | 1.2:-81731932 | None:intergenic |
| TAGTATTGTAGTGATCATGG+TGG | 0.657344 | 1.2:-81731309 | None:intergenic |
| GGAAACACCATGATGAGTAG+TGG | 0.662012 | 1.2:+81731832 | MS.gene065158:CDS |
| TTCCACGTCTCAGTTTCACA+CGG | 0.664044 | 1.2:+81731787 | MS.gene065158:CDS |
| TAGTAACATGGTGAAACCTG+TGG | 0.665975 | 1.2:+81731864 | MS.gene065158:CDS |
| AGGGTTTCGAACGAAGGACA+CGG | 0.671715 | 1.2:-81731650 | None:intergenic |
| GAAAGTTTCATTGATACCGG+AGG | 0.690817 | 1.2:-81731479 | None:intergenic |
| GGAACCATCATGGAACCTGG+CGG | 0.707259 | 1.2:-81731712 | None:intergenic |
| GGGCGGAACGTAAACCCAAG+AGG | 0.707653 | 1.2:-81731746 | None:intergenic |
| AACCGTGTGAAACTGAGACG+TGG | 0.720557 | 1.2:-81731789 | None:intergenic |
| AGTAACATGGTGAAACCTGT+GGG | 0.725437 | 1.2:+81731865 | MS.gene065158:CDS |
| GAAACTGAGACGTGGAACGG+AGG | 0.750713 | 1.2:-81731781 | None:intergenic |
| GTTTCGAACGAAGGACACGG+CGG | 0.788365 | 1.2:-81731647 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTAATAATAATAGTAACA+TGG | + | chr1.2:81731852-81731871 | MS.gene065158:CDS | 20.0% |
| !! | TTTTAGTATTGTAGTGATCA+TGG | - | chr1.2:81731315-81731334 | None:intergenic | 25.0% |
| ATTATTACCACTACTCATCA+TGG | - | chr1.2:81731842-81731861 | None:intergenic | 30.0% | |
| CAAACTCTCTGCAACAATAT+TGG | - | chr1.2:81731537-81731556 | None:intergenic | 35.0% | |
| CCCAATGCATCATCAAAATT+GGG | - | chr1.2:81732015-81732034 | None:intergenic | 35.0% | |
| TAAGGTGTGTTTGAGAAGTT+GGG | - | chr1.2:81731345-81731364 | None:intergenic | 35.0% | |
| TAGTATTGTAGTGATCATGG+TGG | - | chr1.2:81731312-81731331 | None:intergenic | 35.0% | |
| TGAGTCTTGAATATCTTGCA+TGG | - | chr1.2:81731401-81731420 | None:intergenic | 35.0% | |
| TGGGAAAGTTTCATTGATAC+CGG | - | chr1.2:81731485-81731504 | None:intergenic | 35.0% | |
| TGTTTGAGTAGGTTCTCAAA+AGG | + | chr1.2:81731979-81731998 | MS.gene065158:CDS | 35.0% | |
| TTAAGGTGTGTTTGAGAAGT+TGG | - | chr1.2:81731346-81731365 | None:intergenic | 35.0% | |
| TTTGAGAACCTACTCAAACA+TGG | - | chr1.2:81731979-81731998 | None:intergenic | 35.0% | |
| ! | GCACTCATATTTTCTTTCAC+CGG | - | chr1.2:81731515-81731534 | None:intergenic | 35.0% |
| !!! | CCCAATTTTGATGATGCATT+GGG | + | chr1.2:81732012-81732031 | MS.gene065158:CDS | 35.0% |
| !!! | GTTCTTTTTTGTGAGCGTTT+TGG | - | chr1.2:81731585-81731604 | None:intergenic | 35.0% |
| AACTTCACCATCAAGATCAC+CGG | + | chr1.2:81731453-81731472 | MS.gene065158:CDS | 40.0% | |
| AGGTTCTCAAAAGGTGATAG+TGG | + | chr1.2:81731988-81732007 | MS.gene065158:CDS | 40.0% | |
| AGTAACATGGTGAAACCTGT+GGG | + | chr1.2:81731865-81731884 | MS.gene065158:CDS | 40.0% | |
| CAAACACACCTTAAGCTCTT+TGG | + | chr1.2:81731352-81731371 | MS.gene065158:CDS | 40.0% | |
| GAAAGTTTCATTGATACCGG+AGG | - | chr1.2:81731482-81731501 | None:intergenic | 40.0% | |
| GCCCAATGCATCATCAAAAT+TGG | - | chr1.2:81732016-81732035 | None:intergenic | 40.0% | |
| GGTTCTCAAAAGGTGATAGT+GGG | + | chr1.2:81731989-81732008 | MS.gene065158:CDS | 40.0% | |
| TAGTAACATGGTGAAACCTG+TGG | + | chr1.2:81731864-81731883 | MS.gene065158:CDS | 40.0% | |
| TTTGCAAATTCACAAGCCCT+TGG | + | chr1.2:81731553-81731572 | MS.gene065158:CDS | 40.0% | |
| ! | CTCATATTTTCTTTCACCGG+AGG | - | chr1.2:81731512-81731531 | None:intergenic | 40.0% |
| ! | GGTGGAAGAAGAAGTTGTTT+TGG | - | chr1.2:81731431-81731450 | None:intergenic | 40.0% |
| ! | TATTTTCTTTCACCGGAGGA+AGG | - | chr1.2:81731508-81731527 | None:intergenic | 40.0% |
| !! | TGATCTTGATGGTGAAGTTG+AGG | - | chr1.2:81731452-81731471 | None:intergenic | 40.0% |
| !!! | GCCCAATTTTGATGATGCAT+TGG | + | chr1.2:81732011-81732030 | MS.gene065158:CDS | 40.0% |
| AACCTGCATCGTTGACAATG+TGG | - | chr1.2:81731935-81731954 | None:intergenic | 45.0% | |
| AGCTGAAGCCAAAGAGCTTA+AGG | - | chr1.2:81731363-81731382 | None:intergenic | 45.0% | |
| ATTGTCAACGATGCAGGTTC+AGG | + | chr1.2:81731936-81731955 | MS.gene065158:CDS | 45.0% | |
| CTTGCATGGTTTCGTCTTCA+TGG | - | chr1.2:81731387-81731406 | None:intergenic | 45.0% | |
| GATGATAGGGTTTCGAACGA+AGG | - | chr1.2:81731659-81731678 | None:intergenic | 45.0% | |
| GGAAACACCATGATGAGTAG+TGG | + | chr1.2:81731832-81731851 | MS.gene065158:CDS | 45.0% | |
| TGTGAAACTGAGACGTGGAA+CGG | - | chr1.2:81731787-81731806 | None:intergenic | 45.0% | |
| TTCCACGTCTCAGTTTCACA+CGG | + | chr1.2:81731787-81731806 | MS.gene065158:CDS | 45.0% | |
| ! | TTCCATGTGTTGGCGTTGTA+GGG | + | chr1.2:81731899-81731918 | MS.gene065158:CDS | 45.0% |
| ! | TTTCCATGTGTTGGCGTTGT+AGG | + | chr1.2:81731898-81731917 | MS.gene065158:CDS | 45.0% |
| !! | TCTTGATGGTGAAGTTGAGG+TGG | - | chr1.2:81731449-81731468 | None:intergenic | 45.0% |
| AACCGTGTGAAACTGAGACG+TGG | - | chr1.2:81731792-81731811 | None:intergenic | 50.0% | |
| ACCATGGGCCATGTTTGAGT+AGG | + | chr1.2:81731968-81731987 | MS.gene065158:CDS | 50.0% | |
| ACCTACTCAAACATGGCCCA+TGG | - | chr1.2:81731972-81731991 | None:intergenic | 50.0% | |
| ACTCAAACATGGCCCATGGT+GGG | - | chr1.2:81731968-81731987 | None:intergenic | 50.0% | |
| AGGGTTTCGAACGAAGGACA+CGG | - | chr1.2:81731653-81731672 | None:intergenic | 50.0% | |
| GAAACTTTCCCACCTTCCTC+CGG | + | chr1.2:81731493-81731512 | MS.gene065158:CDS | 50.0% | |
| GAGCAAAGGCGGAGATGATA+GGG | - | chr1.2:81731672-81731691 | None:intergenic | 50.0% | |
| GCAAATTCACAAGCCCTTGG+TGG | + | chr1.2:81731556-81731575 | MS.gene065158:CDS | 50.0% | |
| GCAGGGATGTTTCCATGTGT+TGG | + | chr1.2:81731889-81731908 | MS.gene065158:CDS | 50.0% | |
| GGAACGTAAACCCAAGAGGA+TGG | - | chr1.2:81731745-81731764 | None:intergenic | 50.0% | |
| GTCCACATTGTCAACGATGC+AGG | + | chr1.2:81731930-81731949 | MS.gene065158:CDS | 50.0% | |
| TACTCAAACATGGCCCATGG+TGG | - | chr1.2:81731969-81731988 | None:intergenic | 50.0% | |
| TCATTGATACCGGAGGAGTC+CGG | - | chr1.2:81731475-81731494 | None:intergenic | 50.0% | |
| TCCAGCTTCTCCATCCTCTT+GGG | + | chr1.2:81731732-81731751 | MS.gene065158:CDS | 50.0% | |
| TGGAGAAGCTGGAACCATCA+TGG | - | chr1.2:81731725-81731744 | None:intergenic | 50.0% | |
| TTCCAGCTTCTCCATCCTCT+TGG | + | chr1.2:81731731-81731750 | MS.gene065158:CDS | 50.0% | |
| TTCTTTCACCGGAGGAAGGT+GGG | - | chr1.2:81731504-81731523 | None:intergenic | 50.0% | |
| TTGCAGCTGGTGCAAGACTA+AGG | - | chr1.2:81732050-81732069 | None:intergenic | 50.0% | |
| TTTCTTTCACCGGAGGAAGG+TGG | - | chr1.2:81731505-81731524 | None:intergenic | 50.0% | |
| ! | CAAGTGTTGTGGAGGAGCAA+AGG | - | chr1.2:81731686-81731705 | None:intergenic | 50.0% |
| ! | TCCATGTGTTGGCGTTGTAG+GGG | + | chr1.2:81731900-81731919 | MS.gene065158:CDS | 50.0% |
| !!! | AGCGTTTTGGTGTCCACCAA+GGG | - | chr1.2:81731572-81731591 | None:intergenic | 50.0% |
| ACCCAAGAGGATGGAGAAGC+TGG | - | chr1.2:81731736-81731755 | None:intergenic | 55.0% | |
| ATGGTGAAACCTGTGGGTGC+AGG | + | chr1.2:81731871-81731890 | MS.gene065158:CDS | 55.0% | |
| ATGGTGTTTCCGTTCCCCGA+CGG | - | chr1.2:81731823-81731842 | None:intergenic | 55.0% | |
| CCAGCTGCAAATCGATCACG+CGG | + | chr1.2:81732060-81732079 | MS.gene065158:CDS | 55.0% | |
| GAAACTGAGACGTGGAACGG+AGG | - | chr1.2:81731784-81731803 | None:intergenic | 55.0% | |
| GAGGAGTCCGGTGATCTTGA+TGG | - | chr1.2:81731463-81731482 | None:intergenic | 55.0% | |
| GCTGGAACCATCATGGAACC+TGG | - | chr1.2:81731718-81731737 | None:intergenic | 55.0% | |
| GGAACCATCATGGAACCTGG+CGG | - | chr1.2:81731715-81731734 | None:intergenic | 55.0% | |
| GGAGCAAAGGCGGAGATGAT+AGG | - | chr1.2:81731673-81731692 | None:intergenic | 55.0% | |
| GTGTTGTGGAGGAGCAAAGG+CGG | - | chr1.2:81731683-81731702 | None:intergenic | 55.0% | |
| GTTTCGAACGAAGGACACGG+CGG | - | chr1.2:81731650-81731669 | None:intergenic | 55.0% | |
| TCAAGATCACCGGACTCCTC+CGG | + | chr1.2:81731463-81731482 | MS.gene065158:CDS | 55.0% | |
| TCCCCTACAACGCCAACACA+TGG | - | chr1.2:81731904-81731923 | None:intergenic | 55.0% | |
| TGCAAATCGATCACGCGGCT+CGG | + | chr1.2:81732065-81732084 | MS.gene065158:CDS | 55.0% | |
| TGGTGAAACCTGTGGGTGCA+GGG | + | chr1.2:81731872-81731891 | MS.gene065158:CDS | 55.0% | |
| ! | ACACGGTTGCGTTTTCCCGT+CGG | + | chr1.2:81731804-81731823 | MS.gene065158:CDS | 55.0% |
| ! | GGAGCTAGCAAGTGTTGTGG+AGG | - | chr1.2:81731694-81731713 | None:intergenic | 55.0% |
| !!! | GAGCGTTTTGGTGTCCACCA+AGG | - | chr1.2:81731573-81731592 | None:intergenic | 55.0% |
| AACGATGCAGGTTCAGGCCC+GGG | + | chr1.2:81731942-81731961 | MS.gene065158:CDS | 60.0% | |
| ACTGAGACGTGGAACGGAGG+TGG | - | chr1.2:81731781-81731800 | None:intergenic | 60.0% | |
| AGCTCCGCCAGGTTCCATGA+TGG | + | chr1.2:81731708-81731727 | MS.gene065158:CDS | 60.0% | |
| CAACGATGCAGGTTCAGGCC+CGG | + | chr1.2:81731941-81731960 | MS.gene065158:CDS | 60.0% | |
| GGAAACATCCCTGCACCCAC+AGG | - | chr1.2:81731883-81731902 | None:intergenic | 60.0% | |
| GGGCGGAACGTAAACCCAAG+AGG | - | chr1.2:81731749-81731768 | None:intergenic | 60.0% | |
| TGGTGTTTCCGTTCCCCGAC+GGG | - | chr1.2:81731822-81731841 | None:intergenic | 60.0% | |
| ! | ACGGTTGCGTTTTCCCGTCG+GGG | + | chr1.2:81731806-81731825 | MS.gene065158:CDS | 60.0% |
| ! | CAACACTTGCTAGCTCCGCC+AGG | + | chr1.2:81731697-81731716 | MS.gene065158:CDS | 60.0% |
| ! | CACGGTTGCGTTTTCCCGTC+GGG | + | chr1.2:81731805-81731824 | MS.gene065158:CDS | 60.0% |
| ! | GGCGGAGCTAGCAAGTGTTG+TGG | - | chr1.2:81731697-81731716 | None:intergenic | 60.0% |
| ! | TGCGTTTTCCCGTCGGGGAA+CGG | + | chr1.2:81731811-81731830 | MS.gene065158:CDS | 60.0% |
| !! | CCGCGTGATCGATTTGCAGC+TGG | - | chr1.2:81732063-81732082 | None:intergenic | 60.0% |
| AACGGAGGTGGAGCGGAACG+GGG | - | chr1.2:81731769-81731788 | None:intergenic | 65.0% | |
| GAACGGAGGTGGAGCGGAAC+GGG | - | chr1.2:81731770-81731789 | None:intergenic | 65.0% | |
| GACGTGGAACGGAGGTGGAG+CGG | - | chr1.2:81731776-81731795 | None:intergenic | 65.0% | |
| GGAACGGAGGTGGAGCGGAA+CGG | - | chr1.2:81731771-81731790 | None:intergenic | 65.0% | |
| !! | AACATGGCCCATGGTGGGCC+CGG | - | chr1.2:81731963-81731982 | None:intergenic | 65.0% |
| TTCAGGCCCGGGCCCACCAT+GGG | + | chr1.2:81731953-81731972 | MS.gene065158:CDS | 70.0% | |
| ! | TCACGCGGCTCGGCTCAGCT+TGG | + | chr1.2:81732075-81732094 | MS.gene065158:CDS | 70.0% |
| !! | ACATGGCCCATGGTGGGCCC+GGG | - | chr1.2:81731962-81731981 | None:intergenic | 70.0% |
| GGAGGTGGAGCGGAACGGGG+CGG | - | chr1.2:81731766-81731785 | None:intergenic | 75.0% | |
| GTTCAGGCCCGGGCCCACCA+TGG | + | chr1.2:81731952-81731971 | MS.gene065158:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 81731298 | 81732119 | 81731298 | ID=MS.gene065158 |
| chr1.2 | mRNA | 81731298 | 81732119 | 81731298 | ID=MS.gene065158.t1;Parent=MS.gene065158 |
| chr1.2 | exon | 81731298 | 81732119 | 81731298 | ID=MS.gene065158.t1.exon1;Parent=MS.gene065158.t1 |
| chr1.2 | CDS | 81731298 | 81732119 | 81731298 | ID=cds.MS.gene065158.t1;Parent=MS.gene065158.t1 |
| Gene Sequence |
| Protein sequence |
