AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052379


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052379.t1 MTR_7g098700 95.417 480 22 0 1 480 53 532 0.0 953
MS.gene052379.t1 MTR_7g098730 94.792 480 25 0 1 480 27 506 0.0 948
MS.gene052379.t1 MTR_7g058700 54.234 496 209 2 1 478 4 499 0.0 570
MS.gene052379.t1 MTR_8g028060 54.747 495 189 4 1 477 20 497 0.0 567
MS.gene052379.t1 MTR_2g029430 52.047 513 211 2 1 478 4 516 0.0 557
MS.gene052379.t1 MTR_2g029450 52.047 513 211 2 1 478 4 516 0.0 557
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052379.t1 AT2G20340 73.585 477 126 0 1 477 12 488 0.0 756
MS.gene052379.t1 AT2G20340 68.344 477 124 1 1 477 12 461 0.0 686
MS.gene052379.t1 AT4G28680 65.625 480 161 1 1 476 60 539 0.0 676
MS.gene052379.t1 AT4G28680 65.560 482 160 2 1 476 60 541 0.0 673
MS.gene052379.t1 AT4G28680 65.353 482 161 2 1 476 60 541 0.0 672
MS.gene052379.t1 AT4G28680 65.353 482 161 2 1 476 51 532 0.0 671
MS.gene052379.t1 AT4G28680 61.765 510 161 3 1 476 51 560 0.0 657
MS.gene052379.t1 AT4G28680 67.656 337 103 2 1 331 51 387 5.04e-169 483
MS.gene052379.t1 AT4G28680 68.239 318 95 2 1 312 51 368 3.14e-160 459

Find 107 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATGTTGCAATGATTC+AGG 0.229186 7.4:-11790789 None:intergenic
TGCCATTATCTTCAGAGTTT+GGG 0.253457 7.4:-11795223 None:intergenic
TTGCCATTATCTTCAGAGTT+TGG 0.256082 7.4:-11795224 None:intergenic
TTAACATGAATGCACATAAA+TGG 0.263676 7.4:+11793938 MS.gene052379:CDS
GGAAAATATGCAAAATAGTT+AGG 0.272556 7.4:-11791844 None:intergenic
CTGTTCAGTGCTTTGGGTTA+AGG 0.293432 7.4:+11793978 MS.gene052379:CDS
ACTTCGACTGTTCAGTGCTT+TGG 0.295923 7.4:+11793971 MS.gene052379:CDS
TTCCTCTTGGGCGTCGGTTT+AGG 0.296718 7.4:+11794510 MS.gene052379:CDS
CTTCGACTGTTCAGTGCTTT+GGG 0.316341 7.4:+11793972 MS.gene052379:CDS
CCCAGTTCTTAGCCAAGTTC+AGG 0.324917 7.4:+11790648 MS.gene052379:CDS
AAAACCATCGACGCTACTAT+TGG 0.326573 7.4:-11791869 None:intergenic
TGCTCTATTAGAGAGTTTAT+AGG 0.332521 7.4:+11795497 MS.gene052379:CDS
CGCAAAATTTGTGGAAGAAT+CGG 0.340460 7.4:-11792683 None:intergenic
ACCTGAACTTGGCTAAGAAC+TGG 0.375623 7.4:-11790649 None:intergenic
ATTGGTAGCCCAACAACATT+TGG 0.376871 7.4:+11793827 MS.gene052379:intron
TGGATGGTGATGCGACTCTA+TGG 0.384269 7.4:+11794883 MS.gene052379:CDS
TTTGTAAAGCGGAGTGTGTT+TGG 0.393179 7.4:-11792363 None:intergenic
TCCCCAAACTCTGAAGATAA+TGG 0.401163 7.4:+11795221 MS.gene052379:CDS
CTCAGTTGCTCAGCGTCCAT+TGG 0.409096 7.4:-11790565 None:intergenic
GACAAGATCCTGCGAGCGGC+TGG 0.416291 7.4:+11792301 MS.gene052379:CDS
GACTAAATCCAGAGCTCTGC+AGG 0.423363 7.4:+11792650 MS.gene052379:CDS
CCGTTGCAGCCAGGTTATCT+TGG 0.425862 7.4:+11790735 MS.gene052379:intron
CTTTCTTGTCATAGATGTAC+AGG 0.430111 7.4:+11791786 MS.gene052379:intron
GGCAAATTCCTCTTGGGCGT+CGG 0.434226 7.4:+11794504 MS.gene052379:CDS
TTAAGCAACCTGCAGAGCTC+TGG 0.434822 7.4:-11792658 None:intergenic
ATGCGACTCTATGGATTAGA+AGG 0.437596 7.4:+11794892 MS.gene052379:CDS
CTCGACTCAGTAAATTCAAC+GGG 0.440670 7.4:+11795266 MS.gene052379:CDS
ATTGCTTCAGAAAGTACATC+AGG 0.443381 7.4:-11792712 None:intergenic
AGTGCTGGTCTCAACATTGT+GGG 0.444926 7.4:+11791907 MS.gene052379:CDS
GATGCATATGTCACAAGCTT+AGG 0.446079 7.4:-11792337 None:intergenic
AGGGGAAAGCGCAAAATTTG+TGG 0.448072 7.4:-11792692 None:intergenic
AAAGACTGGCAAATTCCTCT+TGG 0.449802 7.4:+11794497 MS.gene052379:CDS
GAGTACCGCCACTTCATTGA+TGG 0.450617 7.4:+11793895 MS.gene052379:CDS
TCAATGAAGTGGCGGTACTC+TGG 0.451337 7.4:-11793892 None:intergenic
CACATGAAACCAAATGTTGT+TGG 0.451855 7.4:-11793836 None:intergenic
TGTTCAAGACACTAGATTCA+AGG 0.454069 7.4:+11794972 MS.gene052379:CDS
CAGAGTTTGGGGAAGGCAAA+AGG 0.465442 7.4:-11795211 None:intergenic
GAAAATATGCAAAATAGTTA+GGG 0.471513 7.4:-11791843 None:intergenic
GGATGAGTAGGAGCAGAATC+TGG 0.480705 7.4:-11790768 None:intergenic
CATGTGGATGCTGCGTATGC+TGG 0.482163 7.4:+11793853 MS.gene052379:CDS
GTGATTATATTGCAGGGCAA+GGG 0.488618 7.4:+11792218 MS.gene052379:intron
TTAGGAGAGATGCTTAGTGC+TGG 0.489284 7.4:+11791892 MS.gene052379:CDS
CGTTCCGTCCAGCCGCTCGC+AGG 0.494855 7.4:-11792309 None:intergenic
CTGAACAGTCGAAGTTAGTA+AGG 0.502263 7.4:-11793963 None:intergenic
CAACAACATTTGGTTTCATG+TGG 0.503005 7.4:+11793837 MS.gene052379:CDS
ACATGAAACCAAATGTTGTT+GGG 0.506017 7.4:-11793835 None:intergenic
CGCTCGCAGGATCTTGTCAC+GGG 0.515747 7.4:-11792296 None:intergenic
AAGACTGGCAAATTCCTCTT+GGG 0.517080 7.4:+11794498 MS.gene052379:CDS
CCATCCAATAGTAGCGTCGA+TGG 0.524097 7.4:+11791865 MS.gene052379:CDS
ATAGAAAGAGAACCTGAACT+TGG 0.527971 7.4:-11790660 None:intergenic
CGGTCATAGATTACAAAGAC+TGG 0.532308 7.4:+11794483 MS.gene052379:CDS
AGCTGTGGTAGTAGTGTTGG+TGG 0.533217 7.4:+11792270 MS.gene052379:CDS
TCAACATTGTGGGATTCAGC+TGG 0.534978 7.4:+11791917 MS.gene052379:CDS
TAGTGCTGGTCTCAACATTG+TGG 0.535988 7.4:+11791906 MS.gene052379:CDS
TGCATTGGCAAAAGTCACTA+AGG 0.536020 7.4:+11793380 MS.gene052379:CDS
AGTACCGCCACTTCATTGAT+GGG 0.540078 7.4:+11793896 MS.gene052379:CDS
TGTTGATCCTCTACCTGCAT+TGG 0.540969 7.4:+11793365 MS.gene052379:CDS
TCGAAACAATTGTCCTCGAC+TGG 0.543941 7.4:+11791965 MS.gene052379:CDS
TTACTGAGTCGAGTAGATCA+TGG 0.545598 7.4:-11795256 None:intergenic
GCTCCAGATCACTAAAACTG+TGG 0.551140 7.4:+11794863 MS.gene052379:intron
GTTTCGAGTTCAGTTGCAGC+GGG 0.553012 7.4:-11791949 None:intergenic
CAAACTAAAGAGAATGTTCG+AGG 0.559012 7.4:-11795182 None:intergenic
AGAAGCTTTCCAAGATAACC+TGG 0.559883 7.4:-11790744 None:intergenic
CCATCGACGCTACTATTGGA+TGG 0.560003 7.4:-11791865 None:intergenic
TGATTATATTGCAGGGCAAG+GGG 0.560104 7.4:+11792219 MS.gene052379:intron
CCTGAACTTGGCTAAGAACT+GGG 0.561432 7.4:-11790648 None:intergenic
TACTACCTGGGGTGACACAT+TGG 0.570201 7.4:+11791815 MS.gene052379:CDS
GCCATTATCTTCAGAGTTTG+GGG 0.572330 7.4:-11795222 None:intergenic
CTTTGCCAATGTGTCACCCC+AGG 0.576950 7.4:-11791820 None:intergenic
TTATCTTCAGAGTTTGGGGA+AGG 0.577908 7.4:-11795218 None:intergenic
GTACAGGAAAAGATACTACC+TGG 0.578178 7.4:+11791802 MS.gene052379:CDS
GTGCCTTGGCAAGCCAGTCG+AGG 0.578549 7.4:-11791978 None:intergenic
CAGATCACTAAAACTGTGGA+TGG 0.579287 7.4:+11794867 MS.gene052379:intron
AAAAGAAATCATGAGGCAGA+AGG 0.579439 7.4:-11792002 None:intergenic
ACATGCCTCACTTCTGTCAA+CGG 0.579703 7.4:-11795438 None:intergenic
ATGAGGCAGAAGGAGTGCCT+TGG 0.580320 7.4:-11791992 None:intergenic
AGATCCTGCGAGCGGCTGGA+CGG 0.585019 7.4:+11792305 MS.gene052379:CDS
TGAAGCTGTGGTAGTAGTGT+TGG 0.586475 7.4:+11792267 MS.gene052379:CDS
GAGAGAGCAAGGTCATAAGA+TGG 0.589776 7.4:+11790585 MS.gene052379:CDS
CACCTAAACCGACGCCCAAG+AGG 0.590015 7.4:-11794512 None:intergenic
TACATTCTACGTTTCGCAGT+AGG 0.591077 7.4:+11795411 MS.gene052379:CDS
TGTCCTCGACTGGCTTGCCA+AGG 0.592342 7.4:+11791975 MS.gene052379:CDS
GGTTTCTTATGTGAGTTCGC+AGG 0.595345 7.4:-11794915 None:intergenic
CCGCTCGCAGGATCTTGTCA+CGG 0.596565 7.4:-11792297 None:intergenic
CTTCAACCCCATCAATGAAG+TGG 0.601748 7.4:-11793903 None:intergenic
TGTCACTAACCATACCTGGC+AGG 0.604879 7.4:-11792389 None:intergenic
ACTCGACTCAGTAAATTCAA+CGG 0.614897 7.4:+11795265 MS.gene052379:CDS
TTGCTTCAGAAAGTACATCA+GGG 0.615964 7.4:-11792711 None:intergenic
TGCAATGATTCAGGATGAGT+AGG 0.619895 7.4:-11790780 None:intergenic
TACAGGAAAAGATACTACCT+GGG 0.621666 7.4:+11791803 MS.gene052379:CDS
CCAGTAGAAAAGAAATCATG+AGG 0.622229 7.4:-11792009 None:intergenic
GCTGAGCAACTGAGAGAGCA+AGG 0.628144 7.4:+11790574 MS.gene052379:CDS
GGGAACAGCAAGTGAAGCTG+TGG 0.634793 7.4:+11792255 MS.gene052379:CDS
GTACCGCCACTTCATTGATG+GGG 0.649089 7.4:+11793897 MS.gene052379:CDS
CCAGGCCTCTCAAGAAAACA+CGG 0.650412 7.4:+11794463 MS.gene052379:intron
CATAAGAAACCACATTGCAA+TGG 0.651111 7.4:+11794927 MS.gene052379:CDS
TAAACTCTCTAATAGAGCAG+TGG 0.652342 7.4:-11795493 None:intergenic
TGCTTCAGAAAGTACATCAG+GGG 0.653948 7.4:-11792710 None:intergenic
TGTTTCGAGTTCAGTTGCAG+CGG 0.656748 7.4:-11791950 None:intergenic
CAACCCCATCAATGAAGTGG+CGG 0.662184 7.4:-11793900 None:intergenic
ATTTCAAATGACATTGCCAG+TGG 0.662897 7.4:+11792733 MS.gene052379:CDS
GATTATATTGCAGGGCAAGG+GGG 0.680223 7.4:+11792220 MS.gene052379:intron
AATAAGCTGCCATTGCAATG+TGG 0.694198 7.4:-11794936 None:intergenic
GAGCACCGTTGACAGAAGTG+AGG 0.695801 7.4:+11795433 MS.gene052379:CDS
CCGTGACAAGATCCTGCGAG+CGG 0.708546 7.4:+11792297 MS.gene052379:CDS
TGAGGCATGTCAGTGCAGCG+TGG 0.738253 7.4:+11795451 MS.gene052379:CDS
ACAGGAAAAGATACTACCTG+GGG 0.769691 7.4:+11791804 MS.gene052379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAAGTTATATTTG+TGG + chr7.4:11791076-11791095 MS.gene052379:intron 10.0%
!! AATTAAAAGAAGAAAAATAT+TGG - chr7.4:11792888-11792907 None:intergenic 10.0%
!! ATAAATAAAGTTATATTTGT+GGG + chr7.4:11791077-11791096 MS.gene052379:intron 10.0%
!!! TTCTTTGATTTTTATTTTTA+TGG + chr7.4:11794693-11794712 MS.gene052379:intron 10.0%
!! AATTATCATTATTCATTCAT+TGG + chr7.4:11794630-11794649 MS.gene052379:intron 15.0%
!! ATGTGACAATTATTATTAAA+CGG + chr7.4:11791168-11791187 MS.gene052379:intron 15.0%
!! ATTATCATTATTCATTCATT+GGG + chr7.4:11794631-11794650 MS.gene052379:intron 15.0%
!! TAAATAAAGTTATATTTGTG+GGG + chr7.4:11791078-11791097 MS.gene052379:intron 15.0%
!! TAACAAATATTAGATGAAAA+TGG - chr7.4:11790686-11790705 None:intergenic 15.0%
!! TGAAATTGGATTATTAAAAT+TGG + chr7.4:11792106-11792125 MS.gene052379:intron 15.0%
!!! ATTTTATCGATTAATCATAA+TGG + chr7.4:11792604-11792623 MS.gene052379:intron 15.0%
!!! ATTTTATTTGAGTTTATCTA+TGG + chr7.4:11791473-11791492 MS.gene052379:intron 15.0%
!!! TTTTTATTAAAAAGTGATAG+CGG - chr7.4:11794773-11794792 None:intergenic 15.0%
!! ACAATTATTATTAAACGGAA+GGG + chr7.4:11791173-11791192 MS.gene052379:intron 20.0%
!! ACATAATTCTTTCAACTATT+TGG - chr7.4:11793490-11793509 None:intergenic 20.0%
!! GAAAATATGCAAAATAGTTA+GGG - chr7.4:11791846-11791865 None:intergenic 20.0%
!! GAAGAAAAATATTGGATATA+AGG - chr7.4:11792880-11792899 None:intergenic 20.0%
!! TAAAATAACAATGGATCAAT+AGG - chr7.4:11792431-11792450 None:intergenic 20.0%
!! TAATAATCCAATTTCATTCA+CGG - chr7.4:11792102-11792121 None:intergenic 20.0%
!! TAATTTAAACTTGTGATTCA+TGG + chr7.4:11792193-11792212 MS.gene052379:intron 20.0%
!! TGACATTTAGAAAGATATTA+TGG - chr7.4:11794007-11794026 None:intergenic 20.0%
!! TGATATAATCTGATAATACT+CGG + chr7.4:11793791-11793810 MS.gene052379:intron 20.0%
!! TGGATTTATATATATGTAGT+TGG + chr7.4:11794713-11794732 MS.gene052379:intron 20.0%
!!! AACACTTATCAATTTTATGT+TGG - chr7.4:11793752-11793771 None:intergenic 20.0%
!!! AATTTGATGCATTTTTTTCA+TGG - chr7.4:11795142-11795161 None:intergenic 20.0%
!!! ACTGGTTTATAAAATAACAA+TGG - chr7.4:11792440-11792459 None:intergenic 20.0%
!!! AGGCATATGAAATATTTTTT+AGG + chr7.4:11792143-11792162 MS.gene052379:intron 20.0%
!!! ATATCATTACTTTTTAGACA+TGG + chr7.4:11793674-11793693 MS.gene052379:intron 20.0%
!!! TATTTGTCATACTTTGTTTT+TGG + chr7.4:11790876-11790895 MS.gene052379:intron 20.0%
!!! TTTTTTGTTGGTATGTTTTA+CGG + chr7.4:11794231-11794250 MS.gene052379:intron 20.0%
! AAAAAACCTTGATGTGTATT+TGG + chr7.4:11791436-11791455 MS.gene052379:intron 25.0%
! AAAAAGCTGTCATATATTCA+TGG + chr7.4:11792484-11792503 MS.gene052379:intron 25.0%
! AAAAGACTTCACATTAACAA+TGG - chr7.4:11794214-11794233 None:intergenic 25.0%
! AAAAGCTGTCATATATTCAT+GGG + chr7.4:11792485-11792504 MS.gene052379:intron 25.0%
! AAAATATTTCATATGCCTTG+TGG - chr7.4:11792141-11792160 None:intergenic 25.0%
! AAATAGAAACAAACAAGCAA+AGG - chr7.4:11790855-11790874 None:intergenic 25.0%
! AAATATTTCATATGCCTTGT+GGG - chr7.4:11792140-11792159 None:intergenic 25.0%
! AAATCATGATCACATCAAAA+CGG - chr7.4:11794666-11794685 None:intergenic 25.0%
! AATAGTATAAGGTGAGTTTA+TGG - chr7.4:11790914-11790933 None:intergenic 25.0%
! ACATGTATTGTTATCTTCTT+GGG - chr7.4:11793582-11793601 None:intergenic 25.0%
! ACTAAATAGGTGATAAACAT+GGG + chr7.4:11793176-11793195 MS.gene052379:intron 25.0%
! ACTTACTAGTATAACAATCA+AGG + chr7.4:11793431-11793450 MS.gene052379:intron 25.0%
! ATGTATCTTACTAGTATGAT+GGG + chr7.4:11792909-11792928 MS.gene052379:intron 25.0%
! ATTGTCAAATATGTAGTTGA+TGG + chr7.4:11791384-11791403 MS.gene052379:intron 25.0%
! CAATTATTATTAAACGGAAG+GGG + chr7.4:11791174-11791193 MS.gene052379:intron 25.0%
! CAATTTGACCATATCATATA+AGG + chr7.4:11791626-11791645 MS.gene052379:intron 25.0%
! CACTAAAACACTCTTATTAA+TGG + chr7.4:11791020-11791039 MS.gene052379:intron 25.0%
! GACAATTATTATTAAACGGA+AGG + chr7.4:11791172-11791191 MS.gene052379:intron 25.0%
! GGAAAATATGCAAAATAGTT+AGG - chr7.4:11791847-11791866 None:intergenic 25.0%
! GTATGCATAAATTAACTTCT+GGG + chr7.4:11795311-11795330 MS.gene052379:intron 25.0%
! TAAGAGGACTTTAATTCTTA+CGG - chr7.4:11792785-11792804 None:intergenic 25.0%
! TACTAAATAGGTGATAAACA+TGG + chr7.4:11793175-11793194 MS.gene052379:intron 25.0%
! TATGTATCTTACTAGTATGA+TGG + chr7.4:11792908-11792927 MS.gene052379:intron 25.0%
! TGCATCAAATTTATATACTC+AGG + chr7.4:11795151-11795170 MS.gene052379:intron 25.0%
! TTAACATGAATGCACATAAA+TGG + chr7.4:11793938-11793957 MS.gene052379:CDS 25.0%
! TTATTAGAAACTAGCATAAG+AGG - chr7.4:11792801-11792820 None:intergenic 25.0%
! TTGTCAAATATGTAGTTGAT+GGG + chr7.4:11791385-11791404 MS.gene052379:intron 25.0%
! TTTAGACATGGATTTGATAA+CGG + chr7.4:11793686-11793705 MS.gene052379:intron 25.0%
! TTTATGTTGGTCATTTCATA+GGG - chr7.4:11793739-11793758 None:intergenic 25.0%
!! AACCATTTTGTGAAAACTTT+TGG - chr7.4:11793648-11793667 None:intergenic 25.0%
!! AAGTGTTTTCATAACACATA+CGG + chr7.4:11795289-11795308 MS.gene052379:CDS 25.0%
!! AATCTGAAGTTGTACTAAAT+AGG + chr7.4:11793163-11793182 MS.gene052379:intron 25.0%
!! CTAATATTGATATGCGTTTT+TGG + chr7.4:11791567-11791586 MS.gene052379:intron 25.0%
!! GAATTTCTGAAAAATAAGGT+AGG + chr7.4:11794139-11794158 MS.gene052379:intron 25.0%
!! TACCAAAAGTTTTCACAAAA+TGG + chr7.4:11793643-11793662 MS.gene052379:intron 25.0%
!! TCCAGAATTTCTGAAAAATA+AGG + chr7.4:11794135-11794154 MS.gene052379:CDS 25.0%
!! TTTTACCAACTAAAACTCTA+TGG + chr7.4:11793202-11793221 MS.gene052379:intron 25.0%
!! TTTTATGTTGGTCATTTCAT+AGG - chr7.4:11793740-11793759 None:intergenic 25.0%
!! TTTTTGTTGGTATGTTTTAC+GGG + chr7.4:11794232-11794251 MS.gene052379:intron 25.0%
!!! AATGTGAAGTCTTTTTTTGT+TGG + chr7.4:11794219-11794238 MS.gene052379:intron 25.0%
!!! ACCTTATTTTTCAGAAATTC+TGG - chr7.4:11794139-11794158 None:intergenic 25.0%
!!! ATATTCAAATCAAGTTGAGA+TGG + chr7.4:11793271-11793290 MS.gene052379:intron 25.0%
!!! GACTTCTTTTAAAAAATGCA+AGG - chr7.4:11792529-11792548 None:intergenic 25.0%
!!! TCATTGCAACATGTTTTAAA+TGG + chr7.4:11790795-11790814 MS.gene052379:CDS 25.0%
AAAACATGTTGCAATGATTC+AGG - chr7.4:11790792-11790811 None:intergenic 30.0%
AAAGCTGTCATATATTCATG+GGG + chr7.4:11792486-11792505 MS.gene052379:intron 30.0%
AATCTGATAATACTCGGTTA+TGG + chr7.4:11793797-11793816 MS.gene052379:intron 30.0%
ACACATTGTTTATCATCAAG+GGG - chr7.4:11795372-11795391 None:intergenic 30.0%
ACATGAAACCAAATGTTGTT+GGG - chr7.4:11793838-11793857 None:intergenic 30.0%
AGACAAGTCCTTATATGATA+TGG - chr7.4:11791637-11791656 None:intergenic 30.0%
ATCAACACTCATTCTCTTAT+TGG + chr7.4:11791236-11791255 MS.gene052379:intron 30.0%
ATCTGATAATACTCGGTTAT+GGG + chr7.4:11793798-11793817 MS.gene052379:intron 30.0%
ATGGATGTGATTATATTGCA+GGG + chr7.4:11792212-11792231 MS.gene052379:intron 30.0%
CAAGAAGATAACAATACATG+TGG + chr7.4:11793581-11793600 MS.gene052379:intron 30.0%
CACACATTGTTTATCATCAA+GGG - chr7.4:11795373-11795392 None:intergenic 30.0%
CACATGTATTGTTATCTTCT+TGG - chr7.4:11793583-11793602 None:intergenic 30.0%
CTAAATAGGTGATAAACATG+GGG + chr7.4:11793177-11793196 MS.gene052379:intron 30.0%
GGTATGCATAAATTAACTTC+TGG + chr7.4:11795310-11795329 MS.gene052379:intron 30.0%
GTTTGTTCTGTATTTCTTGT+TGG + chr7.4:11793236-11793255 MS.gene052379:intron 30.0%
TCAACACTCATTCTCTTATT+GGG + chr7.4:11791237-11791256 MS.gene052379:intron 30.0%
TGATAATAATGCAACCTCAA+AGG - chr7.4:11792576-11792595 None:intergenic 30.0%
TTGAGGTTGCATTATTATCA+GGG + chr7.4:11792576-11792595 MS.gene052379:intron 30.0%
TTGGCTTAAGTTTCTTAAAC+AGG + chr7.4:11794374-11794393 MS.gene052379:intron 30.0%
! AGTACCTATACTTTGGAAAT+GGG - chr7.4:11791283-11791302 None:intergenic 30.0%
! TAGTACCTATACTTTGGAAA+TGG - chr7.4:11791284-11791303 None:intergenic 30.0%
! TGTCAAATATGTAGTTGATG+GGG + chr7.4:11791386-11791405 MS.gene052379:intron 30.0%
! TTCTTCTTTTGTTAGATGCT+GGG + chr7.4:11793017-11793036 MS.gene052379:intron 30.0%
! TTTCTTCTTTTGTTAGATGC+TGG + chr7.4:11793016-11793035 MS.gene052379:intron 30.0%
! TTTGAGGTTGCATTATTATC+AGG + chr7.4:11792575-11792594 MS.gene052379:intron 30.0%
!! AAGTTGATATGTGTTGATAC+AGG + chr7.4:11794078-11794097 MS.gene052379:intron 30.0%
!! TTTGCAAATTAGAAAGTGCT+CGG + chr7.4:11792932-11792951 MS.gene052379:intron 30.0%
AAAAGAAATCATGAGGCAGA+AGG - chr7.4:11792005-11792024 None:intergenic 35.0%
AACCTTGATGTGTATTTGGA+TGG + chr7.4:11791440-11791459 MS.gene052379:intron 35.0%
AAGAGAATATGTTTGTCAGG+GGG - chr7.4:11794307-11794326 None:intergenic 35.0%
ACCAACTAAAACTCTATGGT+TGG + chr7.4:11793206-11793225 MS.gene052379:intron 35.0%
ACCTTGATGTGTATTTGGAT+GGG + chr7.4:11791441-11791460 MS.gene052379:intron 35.0%
ACGGTAGCACATAAGAAAAA+AGG - chr7.4:11792766-11792785 None:intergenic 35.0%
ACTATTAAGCGTGTAATGCA+CGG - chr7.4:11792833-11792852 None:intergenic 35.0%
ACTCGACTCAGTAAATTCAA+CGG + chr7.4:11795265-11795284 MS.gene052379:CDS 35.0%
AGGAAGAGAATATGTTTGTC+AGG - chr7.4:11794310-11794329 None:intergenic 35.0%
AGGGGAAGAACATATTACAT+AGG - chr7.4:11795354-11795373 None:intergenic 35.0%
AGTTGTCTTCCTAGTTACTT+AGG - chr7.4:11793517-11793536 None:intergenic 35.0%
ATAGAAAGAGAACCTGAACT+TGG - chr7.4:11790663-11790682 None:intergenic 35.0%
ATAGGGAATCTTCCAAGAAA+TGG - chr7.4:11793722-11793741 None:intergenic 35.0%
ATCTCATGTTAGTGCTCATT+TGG - chr7.4:11791701-11791720 None:intergenic 35.0%
ATTTCAAATGACATTGCCAG+TGG + chr7.4:11792733-11792752 MS.gene052379:CDS 35.0%
CAAACTAAAGAGAATGTTCG+AGG - chr7.4:11795185-11795204 None:intergenic 35.0%
CACATGAAACCAAATGTTGT+TGG - chr7.4:11793839-11793858 None:intergenic 35.0%
CATAAGAAACCACATTGCAA+TGG + chr7.4:11794927-11794946 MS.gene052379:CDS 35.0%
CATAAGCACACAATTAGACA+AGG - chr7.4:11794432-11794451 None:intergenic 35.0%
CATGGATGTGATTATATTGC+AGG + chr7.4:11792211-11792230 MS.gene052379:intron 35.0%
CATTACACCGTGAATGAAAT+TGG + chr7.4:11792092-11792111 MS.gene052379:intron 35.0%
CCAGTAGAAAAGAAATCATG+AGG - chr7.4:11792012-11792031 None:intergenic 35.0%
CGCAAAATTTGTGGAAGAAT+CGG - chr7.4:11792686-11792705 None:intergenic 35.0%
CTCATGTAGTACCTATACTT+TGG - chr7.4:11791290-11791309 None:intergenic 35.0%
CTTCTTGGGTTTCTAACTTA+CGG - chr7.4:11793568-11793587 None:intergenic 35.0%
CTTGTCTAATTGTGTGCTTA+TGG + chr7.4:11794430-11794449 MS.gene052379:intron 35.0%
CTTTCTTGTCATAGATGTAC+AGG + chr7.4:11791786-11791805 MS.gene052379:intron 35.0%
GAAGAGAATATGTTTGTCAG+GGG - chr7.4:11794308-11794327 None:intergenic 35.0%
GATCTTAAATTGTGCATGCA+AGG + chr7.4:11793092-11793111 MS.gene052379:intron 35.0%
GCACACATTGTTTATCATCA+AGG - chr7.4:11795374-11795393 None:intergenic 35.0%
GGAAGAGAATATGTTTGTCA+GGG - chr7.4:11794309-11794328 None:intergenic 35.0%
TAAACTCTCTAATAGAGCAG+TGG - chr7.4:11795496-11795515 None:intergenic 35.0%
TACAGGAAAAGATACTACCT+GGG + chr7.4:11791803-11791822 MS.gene052379:CDS 35.0%
TACCACATGTGTCATCTATA+TGG - chr7.4:11792463-11792482 None:intergenic 35.0%
TACGGGAAATCATGATTCTT+AGG + chr7.4:11794249-11794268 MS.gene052379:intron 35.0%
TATGTGAGTCCTAAGTAACT+AGG + chr7.4:11793505-11793524 MS.gene052379:intron 35.0%
TCATACAATCATTGGGTCAA+GGG + chr7.4:11792956-11792975 MS.gene052379:intron 35.0%
TCATATGTACAAGTGTAACC+TGG + chr7.4:11795028-11795047 MS.gene052379:intron 35.0%
TCATGAGACTAAGCAGTTAA+TGG - chr7.4:11793057-11793076 None:intergenic 35.0%
TGATGATAAACAATGTGTGC+AGG + chr7.4:11795374-11795393 MS.gene052379:intron 35.0%
TGCCATTATCTTCAGAGTTT+GGG - chr7.4:11795226-11795245 None:intergenic 35.0%
TGTTCAAGACACTAGATTCA+AGG + chr7.4:11794972-11794991 MS.gene052379:CDS 35.0%
TTGCCATTATCTTCAGAGTT+TGG - chr7.4:11795227-11795246 None:intergenic 35.0%
TTGTCTGATAAGCGCTTATA+TGG + chr7.4:11791651-11791670 MS.gene052379:intron 35.0%
! AAGCACGGATGTTTTTCTTT+CGG + chr7.4:11791739-11791758 MS.gene052379:intron 35.0%
! AGTTTAAGTTACACGTGTGA+CGG - chr7.4:11794823-11794842 None:intergenic 35.0%
! ATTGCTTCAGAAAGTACATC+AGG - chr7.4:11792715-11792734 None:intergenic 35.0%
! CAACAACATTTGGTTTCATG+TGG + chr7.4:11793837-11793856 MS.gene052379:CDS 35.0%
! CCTCATGATTTCTTTTCTAC+TGG + chr7.4:11792009-11792028 MS.gene052379:CDS 35.0%
! GAAAAAAGGTATAAGACCAC+TGG - chr7.4:11792752-11792771 None:intergenic 35.0%
! TACATTTTATGTGTGCAGGT+TGG + chr7.4:11793324-11793343 MS.gene052379:intron 35.0%
! TCACTACATTTTATGTGTGC+AGG + chr7.4:11793320-11793339 MS.gene052379:intron 35.0%
! TTCAAGGTACTCTTTGTTCT+AGG + chr7.4:11794988-11795007 MS.gene052379:intron 35.0%
! TTGCTTCAGAAAGTACATCA+GGG - chr7.4:11792714-11792733 None:intergenic 35.0%
! TTTTCTACTGGTAAGCTCTT+GGG + chr7.4:11792021-11792040 MS.gene052379:intron 35.0%
!! AAAAAGTGATAGCGGTACAA+AGG - chr7.4:11794765-11794784 None:intergenic 35.0%
!! ACCAACCATAGAGTTTTAGT+TGG - chr7.4:11793210-11793229 None:intergenic 35.0%
!! GTCAAATATGTAGTTGATGG+GGG + chr7.4:11791387-11791406 MS.gene052379:intron 35.0%
!! TAGAGTGAGTGTTGAAAAGA+GGG + chr7.4:11791335-11791354 MS.gene052379:intron 35.0%
!! TTAGAGTGAGTGTTGAAAAG+AGG + chr7.4:11791334-11791353 MS.gene052379:intron 35.0%
AAAACCATCGACGCTACTAT+TGG - chr7.4:11791872-11791891 None:intergenic 40.0%
AAAGACTGGCAAATTCCTCT+TGG + chr7.4:11794497-11794516 MS.gene052379:CDS 40.0%
AAGACTGGCAAATTCCTCTT+GGG + chr7.4:11794498-11794517 MS.gene052379:CDS 40.0%
AATAAGCTGCCATTGCAATG+TGG - chr7.4:11794939-11794958 None:intergenic 40.0%
AATTGGAGTTTGAACCCACA+AGG + chr7.4:11792123-11792142 MS.gene052379:intron 40.0%
ACACACACACATAACAAAGC+TGG - chr7.4:11792856-11792875 None:intergenic 40.0%
ACAGGAAAAGATACTACCTG+GGG + chr7.4:11791804-11791823 MS.gene052379:CDS 40.0%
AGAAGCTTTCCAAGATAACC+TGG - chr7.4:11790747-11790766 None:intergenic 40.0%
AGGGAGGGAGTAATAGTATA+AGG - chr7.4:11790925-11790944 None:intergenic 40.0%
CAGATCACTAAAACTGTGGA+TGG + chr7.4:11794867-11794886 MS.gene052379:intron 40.0%
CATGTGTCATCTATATGGAC+TGG - chr7.4:11792458-11792477 None:intergenic 40.0%
CGGTCATAGATTACAAAGAC+TGG + chr7.4:11794483-11794502 MS.gene052379:CDS 40.0%
CTCATACAATCATTGGGTCA+AGG + chr7.4:11792955-11792974 MS.gene052379:intron 40.0%
CTCGACTCAGTAAATTCAAC+GGG + chr7.4:11795266-11795285 MS.gene052379:CDS 40.0%
CTGAACAGTCGAAGTTAGTA+AGG - chr7.4:11793966-11793985 None:intergenic 40.0%
CTGATAAGCGCTTATATGGT+AGG + chr7.4:11791655-11791674 MS.gene052379:intron 40.0%
GAAATGTCACTAACCATACC+TGG - chr7.4:11792396-11792415 None:intergenic 40.0%
GAGACTAAGCAGTTAATGGA+AGG - chr7.4:11793053-11793072 None:intergenic 40.0%
GATGCATATGTCACAAGCTT+AGG - chr7.4:11792340-11792359 None:intergenic 40.0%
GCCATTATCTTCAGAGTTTG+GGG - chr7.4:11795225-11795244 None:intergenic 40.0%
GGTCCTATACTGAGTAAACA+GGG + chr7.4:11794347-11794366 MS.gene052379:intron 40.0%
GTACAGGAAAAGATACTACC+TGG + chr7.4:11791802-11791821 MS.gene052379:CDS 40.0%
GTCCATATAGATGACACATG+TGG + chr7.4:11792458-11792477 MS.gene052379:intron 40.0%
GTGATTATATTGCAGGGCAA+GGG + chr7.4:11792218-11792237 MS.gene052379:intron 40.0%
TAATCCCTCTTTCTCAAGCA+CGG + chr7.4:11791724-11791743 MS.gene052379:intron 40.0%
TACACGTGTGACGGTAATTA+TGG - chr7.4:11794814-11794833 None:intergenic 40.0%
TACATTCTACGTTTCGCAGT+AGG + chr7.4:11795411-11795430 MS.gene052379:CDS 40.0%
TATCTCCTTGACTGCGATTA+AGG - chr7.4:11791413-11791432 None:intergenic 40.0%
TCCCATCCAAATACACATCA+AGG - chr7.4:11791445-11791464 None:intergenic 40.0%
TCCTCTACTGTTCATGGATT+GGG + chr7.4:11794326-11794345 MS.gene052379:intron 40.0%
TGACGTTGCAAAATCTTGCT+CGG + chr7.4:11792064-11792083 MS.gene052379:intron 40.0%
TGATTATATTGCAGGGCAAG+GGG + chr7.4:11792219-11792238 MS.gene052379:intron 40.0%
TGCAATGATTCAGGATGAGT+AGG - chr7.4:11790783-11790802 None:intergenic 40.0%
TGTGATTATATTGCAGGGCA+AGG + chr7.4:11792217-11792236 MS.gene052379:intron 40.0%
TTACTGAGTCGAGTAGATCA+TGG - chr7.4:11795259-11795278 None:intergenic 40.0%
TTATCTTCAGAGTTTGGGGA+AGG - chr7.4:11795221-11795240 None:intergenic 40.0%
TTCATCCAACACGTGAATGA+CGG + chr7.4:11791311-11791330 MS.gene052379:intron 40.0%
TTCCTCTACTGTTCATGGAT+TGG + chr7.4:11794325-11794344 MS.gene052379:intron 40.0%
TTCTCTTCCTCTACTGTTCA+TGG + chr7.4:11794320-11794339 MS.gene052379:intron 40.0%
TTTGTAAAGCGGAGTGTGTT+TGG - chr7.4:11792366-11792385 None:intergenic 40.0%
! AGCACGGATGTTTTTCTTTC+GGG + chr7.4:11791740-11791759 MS.gene052379:intron 40.0%
! ATTGGTAGCCCAACAACATT+TGG + chr7.4:11793827-11793846 MS.gene052379:intron 40.0%
! CTTTTCTACTGGTAAGCTCT+TGG + chr7.4:11792020-11792039 MS.gene052379:intron 40.0%
! CTTTTGCTTTGACAGATAGG+AGG + chr7.4:11792628-11792647 MS.gene052379:intron 40.0%
! GCTTATGGTATTGAATGTCC+AGG + chr7.4:11794445-11794464 MS.gene052379:intron 40.0%
! GGTCTTTTGCTTTGACAGAT+AGG + chr7.4:11792625-11792644 MS.gene052379:intron 40.0%
! GTTGACAAGCTGTTAGTTTC+TGG + chr7.4:11791544-11791563 MS.gene052379:intron 40.0%
! TATGACCGTGTTTTCTTGAG+AGG - chr7.4:11794471-11794490 None:intergenic 40.0%
! TCCCCAAACTCTGAAGATAA+TGG + chr7.4:11795221-11795240 MS.gene052379:CDS 40.0%
! TGCATTGGCAAAAGTCACTA+AGG + chr7.4:11793380-11793399 MS.gene052379:CDS 40.0%
! TGCTTCAGAAAGTACATCAG+GGG - chr7.4:11792713-11792732 None:intergenic 40.0%
! TTAGTGACTTTTGCCAATGC+AGG - chr7.4:11793381-11793400 None:intergenic 40.0%
!! ACAATCAAGGCATTGTAGTG+TGG + chr7.4:11793444-11793463 MS.gene052379:intron 40.0%
!! ATGCGACTCTATGGATTAGA+AGG + chr7.4:11794892-11794911 MS.gene052379:CDS 40.0%
!! CAATGTGTGCAGGTTTTATC+AGG + chr7.4:11795384-11795403 MS.gene052379:intron 40.0%
!! CATCCACAGTTTTAGTGATC+TGG - chr7.4:11794869-11794888 None:intergenic 40.0%
!!! AGTAGCGTCGATGGTTTTTT+AGG + chr7.4:11791874-11791893 MS.gene052379:CDS 40.0%
!!! TGCAATGGCAGCTTATTTTG+AGG + chr7.4:11794942-11794961 MS.gene052379:CDS 40.0%
AACATCCGTGCTTGAGAAAG+AGG - chr7.4:11791732-11791751 None:intergenic 45.0%
AAGTCCTTCTTTGCGTTGCT+TGG + chr7.4:11792544-11792563 MS.gene052379:intron 45.0%
ACATCCGTGCTTGAGAAAGA+GGG - chr7.4:11791731-11791750 None:intergenic 45.0%
ACATGCCTCACTTCTGTCAA+CGG - chr7.4:11795441-11795460 None:intergenic 45.0%
ACCCAATCCATGAACAGTAG+AGG - chr7.4:11794330-11794349 None:intergenic 45.0%
ACCTGAACTTGGCTAAGAAC+TGG - chr7.4:11790652-11790671 None:intergenic 45.0%
ACTGAGTAAACAGGGTCGTT+TGG + chr7.4:11794355-11794374 MS.gene052379:intron 45.0%
ACTTCGACTGTTCAGTGCTT+TGG + chr7.4:11793971-11793990 MS.gene052379:CDS 45.0%
AGTACCGCCACTTCATTGAT+GGG + chr7.4:11793896-11793915 MS.gene052379:CDS 45.0%
CAGACATACATCTGTGTCTG+TGG + chr7.4:11794584-11794603 MS.gene052379:intron 45.0%
CCTGAACTTGGCTAAGAACT+GGG - chr7.4:11790651-11790670 None:intergenic 45.0%
CGACCCTGTTTACTCAGTAT+AGG - chr7.4:11794353-11794372 None:intergenic 45.0%
CTCGGTTATGGGTGTCTTAT+TGG + chr7.4:11793809-11793828 MS.gene052379:intron 45.0%
CTTCAACCCCATCAATGAAG+TGG - chr7.4:11793906-11793925 None:intergenic 45.0%
CTTCGACTGTTCAGTGCTTT+GGG + chr7.4:11793972-11793991 MS.gene052379:CDS 45.0%
GACGTTGCAAAATCTTGCTC+GGG + chr7.4:11792065-11792084 MS.gene052379:intron 45.0%
GAGAGAGCAAGGTCATAAGA+TGG + chr7.4:11790585-11790604 MS.gene052379:CDS 45.0%
GATTATATTGCAGGGCAAGG+GGG + chr7.4:11792220-11792239 MS.gene052379:intron 45.0%
GCTCCAGATCACTAAAACTG+TGG + chr7.4:11794863-11794882 MS.gene052379:intron 45.0%
GCTCGGCTCATACAATCATT+GGG + chr7.4:11792949-11792968 MS.gene052379:intron 45.0%
GGGACCCATTTCCAAAGTAT+AGG + chr7.4:11791276-11791295 MS.gene052379:intron 45.0%
GGGTCCTATACTGAGTAAAC+AGG + chr7.4:11794346-11794365 MS.gene052379:intron 45.0%
GGTTTCTTATGTGAGTTCGC+AGG - chr7.4:11794918-11794937 None:intergenic 45.0%
TACAAAAAGCCTGCCAGGTA+TGG + chr7.4:11792380-11792399 MS.gene052379:intron 45.0%
TAGAGCGAAACTCTAATGCC+AGG - chr7.4:11795049-11795068 None:intergenic 45.0%
TCAACATTGTGGGATTCAGC+TGG + chr7.4:11791917-11791936 MS.gene052379:CDS 45.0%
TCGAAACAATTGTCCTCGAC+TGG + chr7.4:11791965-11791984 MS.gene052379:CDS 45.0%
TCTAACCGTCATTCACGTGT+TGG - chr7.4:11791319-11791338 None:intergenic 45.0%
TGAAGCTGTGGTAGTAGTGT+TGG + chr7.4:11792267-11792286 MS.gene052379:CDS 45.0%
TGCCTCTCAAAATGAATGCG+CGG + chr7.4:11790944-11790963 MS.gene052379:intron 45.0%
TGCTCGGCTCATACAATCAT+TGG + chr7.4:11792948-11792967 MS.gene052379:intron 45.0%
TGTTGATCCTCTACCTGCAT+TGG + chr7.4:11793365-11793384 MS.gene052379:CDS 45.0%
TGTTTGTCAGGGGGATAACT+AGG - chr7.4:11794298-11794317 None:intergenic 45.0%
TTAGGAGAGATGCTTAGTGC+TGG + chr7.4:11791892-11791911 MS.gene052379:CDS 45.0%
TTGCTTGGTTGCATCCTTTG+AGG + chr7.4:11792559-11792578 MS.gene052379:intron 45.0%
! AACCGCGCATTCATTTTGAG+AGG - chr7.4:11790949-11790968 None:intergenic 45.0%
! ACTTTTGCCAATGCAGGTAG+AGG - chr7.4:11793375-11793394 None:intergenic 45.0%
! AGGGGAAAGCGCAAAATTTG+TGG - chr7.4:11792695-11792714 None:intergenic 45.0%
! CTGGCAGGCTTTTTGTAAAG+CGG - chr7.4:11792377-11792396 None:intergenic 45.0%
! CTGTTCAGTGCTTTGGGTTA+AGG + chr7.4:11793978-11793997 MS.gene052379:CDS 45.0%
! GCACGGATGTTTTTCTTTCG+GGG + chr7.4:11791741-11791760 MS.gene052379:intron 45.0%
!! ACGGAAGGGGTATTAAGAAG+TGG + chr7.4:11791187-11791206 MS.gene052379:intron 45.0%
!! AGTGCTGGTCTCAACATTGT+GGG + chr7.4:11791907-11791926 MS.gene052379:CDS 45.0%
!! ATTCATTTTGAGAGGCAGGG+AGG - chr7.4:11790941-11790960 None:intergenic 45.0%
!! CGCATTCATTTTGAGAGGCA+GGG - chr7.4:11790944-11790963 None:intergenic 45.0%
!! TAGTGCTGGTCTCAACATTG+TGG + chr7.4:11791906-11791925 MS.gene052379:CDS 45.0%
!! TGACAGTGATTGAGAGTGCT+CGG + chr7.4:11791503-11791522 MS.gene052379:intron 45.0%
!! TGTTTCGAGTTCAGTTGCAG+CGG - chr7.4:11791953-11791972 None:intergenic 45.0%
!! TTCATTTTGAGAGGCAGGGA+GGG - chr7.4:11790940-11790959 None:intergenic 45.0%
AAGATAACCTGGCTGCAACG+GGG - chr7.4:11790736-11790755 None:intergenic 50.0%
ACTTGCCTGCTAACCTACAC+TGG + chr7.4:11794840-11794859 MS.gene052379:intron 50.0%
CAACCCCATCAATGAAGTGG+CGG - chr7.4:11793903-11793922 None:intergenic 50.0%
CAAGATAACCTGGCTGCAAC+GGG - chr7.4:11790737-11790756 None:intergenic 50.0%
CAAGGGGGTGGAGTTATACA+GGG + chr7.4:11792235-11792254 MS.gene052379:CDS 50.0%
CAGAGTTTGGGGAAGGCAAA+AGG - chr7.4:11795214-11795233 None:intergenic 50.0%
CCAAGATAACCTGGCTGCAA+CGG - chr7.4:11790738-11790757 None:intergenic 50.0%
CCAGGCCTCTCAAGAAAACA+CGG + chr7.4:11794463-11794482 MS.gene052379:intron 50.0%
CCATCGACGCTACTATTGGA+TGG - chr7.4:11791868-11791887 None:intergenic 50.0%
CCCAGTTCTTAGCCAAGTTC+AGG + chr7.4:11790648-11790667 MS.gene052379:CDS 50.0%
CGCTTTACAAAAAGCCTGCC+AGG + chr7.4:11792375-11792394 MS.gene052379:CDS 50.0%
CTTGCCTGCTAACCTACACT+GGG + chr7.4:11794841-11794860 MS.gene052379:intron 50.0%
GAAATGGGTCCCACTCACAA+GGG - chr7.4:11791268-11791287 None:intergenic 50.0%
GACTAAATCCAGAGCTCTGC+AGG + chr7.4:11792650-11792669 MS.gene052379:CDS 50.0%
GCAACCAAGCAACGCAAAGA+AGG - chr7.4:11792551-11792570 None:intergenic 50.0%
GGATGAGTAGGAGCAGAATC+TGG - chr7.4:11790771-11790790 None:intergenic 50.0%
GTACCGCCACTTCATTGATG+GGG + chr7.4:11793897-11793916 MS.gene052379:CDS 50.0%
TACTACCTGGGGTGACACAT+TGG + chr7.4:11791815-11791834 MS.gene052379:CDS 50.0%
TCAATGAAGTGGCGGTACTC+TGG - chr7.4:11793895-11793914 None:intergenic 50.0%
TGGGTGAAACCCTTGTGAGT+GGG + chr7.4:11791256-11791275 MS.gene052379:intron 50.0%
TGTCACTAACCATACCTGGC+AGG - chr7.4:11792392-11792411 None:intergenic 50.0%
TTAAGCAACCTGCAGAGCTC+TGG - chr7.4:11792661-11792680 None:intergenic 50.0%
TTGGGTGAAACCCTTGTGAG+TGG + chr7.4:11791255-11791274 MS.gene052379:intron 50.0%
! AGCTGTGGTAGTAGTGTTGG+TGG + chr7.4:11792270-11792289 MS.gene052379:CDS 50.0%
! CCATCCAATAGTAGCGTCGA+TGG + chr7.4:11791865-11791884 MS.gene052379:CDS 50.0%
! GAGTACCGCCACTTCATTGA+TGG + chr7.4:11793895-11793914 MS.gene052379:CDS 50.0%
! GGTCACGCTATGCCATTTCT+TGG + chr7.4:11793707-11793726 MS.gene052379:intron 50.0%
! TGGATGGTGATGCGACTCTA+TGG + chr7.4:11794883-11794902 MS.gene052379:CDS 50.0%
!! ACAGTGATTGAGAGTGCTCG+GGG + chr7.4:11791505-11791524 MS.gene052379:intron 50.0%
!! GACAGTGATTGAGAGTGCTC+GGG + chr7.4:11791504-11791523 MS.gene052379:intron 50.0%
!! GCGCATTCATTTTGAGAGGC+AGG - chr7.4:11790945-11790964 None:intergenic 50.0%
!! GTTTCGAGTTCAGTTGCAGC+GGG - chr7.4:11791952-11791971 None:intergenic 50.0%
AGATAACCTGGCTGCAACGG+GGG - chr7.4:11790735-11790754 None:intergenic 55.0%
CATGTGGATGCTGCGTATGC+TGG + chr7.4:11793853-11793872 MS.gene052379:CDS 55.0%
CCGTTGCAGCCAGGTTATCT+TGG + chr7.4:11790735-11790754 MS.gene052379:intron 55.0%
CTTTGCCAATGTGTCACCCC+AGG - chr7.4:11791823-11791842 None:intergenic 55.0%
GCAAGGGGGTGGAGTTATAC+AGG + chr7.4:11792234-11792253 MS.gene052379:CDS 55.0%
GCTGAGCAACTGAGAGAGCA+AGG + chr7.4:11790574-11790593 MS.gene052379:CDS 55.0%
GGAAATGGGTCCCACTCACA+AGG - chr7.4:11791269-11791288 None:intergenic 55.0%
GGCAAATTCCTCTTGGGCGT+CGG + chr7.4:11794504-11794523 MS.gene052379:CDS 55.0%
GGGAACAGCAAGTGAAGCTG+TGG + chr7.4:11792255-11792274 MS.gene052379:CDS 55.0%
TATATTGCAGGGCAAGGGGG+TGG + chr7.4:11792223-11792242 MS.gene052379:intron 55.0%
! AGTGATCTGGAGCCCAGTGT+AGG - chr7.4:11794856-11794875 None:intergenic 55.0%
! CCGTGTTTTCTTGAGAGGCC+TGG - chr7.4:11794466-11794485 None:intergenic 55.0%
! GAGCACCGTTGACAGAAGTG+AGG + chr7.4:11795433-11795452 MS.gene052379:CDS 55.0%
!! ATGAGGCAGAAGGAGTGCCT+TGG - chr7.4:11791995-11792014 None:intergenic 55.0%
!! TTCCTCTTGGGCGTCGGTTT+AGG + chr7.4:11794510-11794529 MS.gene052379:CDS 55.0%
ATTTCTCCCCCGTTGCAGCC+AGG + chr7.4:11790726-11790745 MS.gene052379:intron 60.0%
CACCTAAACCGACGCCCAAG+AGG - chr7.4:11794515-11794534 None:intergenic 60.0%
CCGCTCGCAGGATCTTGTCA+CGG - chr7.4:11792300-11792319 None:intergenic 60.0%
CCGTGACAAGATCCTGCGAG+CGG + chr7.4:11792297-11792316 MS.gene052379:CDS 60.0%
CGCTCGCAGGATCTTGTCAC+GGG - chr7.4:11792299-11792318 None:intergenic 60.0%
GGAGCCCAGTGTAGGTTAGC+AGG - chr7.4:11794848-11794867 None:intergenic 60.0%
GGGGGCCTTAATCGCAGTCA+AGG + chr7.4:11791405-11791424 MS.gene052379:intron 60.0%
TGAGGCATGTCAGTGCAGCG+TGG + chr7.4:11795451-11795470 MS.gene052379:CDS 60.0%
!! TGTCCTCGACTGGCTTGCCA+AGG + chr7.4:11791975-11791994 MS.gene052379:CDS 60.0%
AGATCCTGCGAGCGGCTGGA+CGG + chr7.4:11792305-11792324 MS.gene052379:CDS 65.0%
GACAAGATCCTGCGAGCGGC+TGG + chr7.4:11792301-11792320 MS.gene052379:CDS 65.0%
GTGCCTTGGCAAGCCAGTCG+AGG - chr7.4:11791981-11792000 None:intergenic 65.0%
CGTTCCGTCCAGCCGCTCGC+AGG - chr7.4:11792312-11792331 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 11790568 11795518 11790568 ID=MS.gene052379
chr7.4 mRNA 11790568 11795518 11790568 ID=MS.gene052379.t1;Parent=MS.gene052379
chr7.4 exon 11790568 11790669 11790568 ID=MS.gene052379.t1.exon1;Parent=MS.gene052379.t1
chr7.4 CDS 11790568 11790669 11790568 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11790744 11790816 11790744 ID=MS.gene052379.t1.exon2;Parent=MS.gene052379.t1
chr7.4 CDS 11790744 11790816 11790744 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11791800 11792030 11791800 ID=MS.gene052379.t1.exon3;Parent=MS.gene052379.t1
chr7.4 CDS 11791800 11792030 11791800 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11792233 11792396 11792233 ID=MS.gene052379.t1.exon4;Parent=MS.gene052379.t1
chr7.4 CDS 11792233 11792396 11792233 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11792643 11792783 11792643 ID=MS.gene052379.t1.exon5;Parent=MS.gene052379.t1
chr7.4 CDS 11792643 11792783 11792643 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11793342 11793401 11793342 ID=MS.gene052379.t1.exon6;Parent=MS.gene052379.t1
chr7.4 CDS 11793342 11793401 11793342 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11793835 11793999 11793835 ID=MS.gene052379.t1.exon7;Parent=MS.gene052379.t1
chr7.4 CDS 11793835 11793999 11793835 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11794100 11794156 11794100 ID=MS.gene052379.t1.exon8;Parent=MS.gene052379.t1
chr7.4 CDS 11794100 11794156 11794100 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11794467 11794531 11794467 ID=MS.gene052379.t1.exon9;Parent=MS.gene052379.t1
chr7.4 CDS 11794467 11794531 11794467 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11794870 11794993 11794870 ID=MS.gene052379.t1.exon10;Parent=MS.gene052379.t1
chr7.4 CDS 11794870 11794993 11794870 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11795173 11795310 11795173 ID=MS.gene052379.t1.exon11;Parent=MS.gene052379.t1
chr7.4 CDS 11795173 11795310 11795173 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
chr7.4 exon 11795396 11795518 11795396 ID=MS.gene052379.t1.exon12;Parent=MS.gene052379.t1
chr7.4 CDS 11795396 11795518 11795396 ID=cds.MS.gene052379.t1;Parent=MS.gene052379.t1
Gene Sequence

>MS.gene052379

ATGGACGCTGAGCAACTGAGAGAGCAAGGTCATAAGATGGTTGATTTCATTGCTGATTACTACAAAACTATTGAAAATTTCCCAGTTCTTAGCCAAGTTCAGGTTCTCTTTCTATCCATTTTCATCTAATATTTGTTACAGTTTCATTTTCTTTCAACATTTCTCCCCCGTTGCAGCCAGGTTATCTTGGAAAGCTTCTACCAGATTCTGCTCCTACTCATCCTGAATCATTGCAACATGTTTTAAATGGTTTGATTACTTACTTACATTTCTCAATTAATTGACCTTTGCTTGTTTGTTTCTATTTATATTTGTCATACTTTGTTTTTGGTCATTATGTCTGCCATAAACTCACCTTATACTATTACTCCCTCCCTGCCTCTCAAAATGAATGCGCGGTTTTTAAGAAAATAATTAGTTGTGTTTATTTTAATAGTAAAATTAGTATTAATCACTAAAACACTCTTATTAATGGCAATTTGTAGACTAGTTAAATCGAGTGAAATTCAATAAATAAAGTTATATTTGTGGGGAGAAAATAATAAATGTTATATTGATATTCTAAAGTGACAATTATTTTGAGACAAAGAAAATATGCAAATGTGACAATTATTATTAAACGGAAGGGGTATTAAGAAGTGGAGTGCTAACTGCTAAGACACTCACTTATCAACACTCATTCTCTTATTGGGTGAAACCCTTGTGAGTGGGACCCATTTCCAAAGTATAGGTACTACATGAGTTTCATCCAACACGTGAATGACGGTTAGAGTGAGTGTTGAAAAGAGGGTGTTACTATTACTTCTCTAAAATATCATTGTCAAATATGTAGTTGATGGGGGCCTTAATCGCAGTCAAGGAGATATAAAAAAAACCTTGATGTGTATTTGGATGGGATTATGAACATTTTATTTGAGTTTATCTATGGAAGCATTTGACAGTGATTGAGAGTGCTCGGGGAAACAATTTATGACATGTTGACAAGCTGTTAGTTTCTGGCTAATATTGATATGCGTTTTTGGATAGCTTATGAAAACAACTTAAAGCTTATATGCAAACAATTTGACCATATCATATAAGGACTTGTCTGATAAGCGCTTATATGGTAGGTGTTTAATTAAGTTGTTCATCCAAATGAGCACTAACATGAGATGATTAATCCCTCTTTCTCAAGCACGGATGTTTTTCTTTCGGGGAATGACTGATTTTTTTTCTTCACTTTCTTGTCATAGATGTACAGGAAAAGATACTACCTGGGGTGACACATTGGCAAAGCCCTAACTATTTTGCATATTTTCCATCCAATAGTAGCGTCGATGGTTTTTTAGGAGAGATGCTTAGTGCTGGTCTCAACATTGTGGGATTCAGCTGGATAACTTCTCCCGCTGCAACTGAACTCGAAACAATTGTCCTCGACTGGCTTGCCAAGGCACTCCTTCTGCCTCATGATTTCTTTTCTACTGGTAAGCTCTTGGGTGATTGTTTCTGAGTTTTGATGACGTTGCAAAATCTTGCTCGGGATTTCATTACACCGTGAATGAAATTGGATTATTAAAATTGGAGTTTGAACCCACAAGGCATATGAAATATTTTTTAGGCAGAAGCTCATATACTATGATGACATGTAATTTAAACTTGTGATTCATGGATGTGATTATATTGCAGGGCAAGGGGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTGGTAGTAGTGTTGGTGGCTGCCCGTGACAAGATCCTGCGAGCGGCTGGACGGAACGCTCTTCCTAAGCTTGTGACATATGCATCTGACCAAACACACTCCGCTTTACAAAAAGCCTGCCAGGTATGGTTAGTGACATTTCAAATTGAAAATGCCTATTGATCCATTGTTATTTTATAAACCAGTCCATATAGATGACACATGTGGTAAAAAAAGCTGTCATATATTCATGGGGTGACTCTTAGATTTGAACCTTGCATTTTTTAAAAGAAGTCCTTCTTTGCGTTGCTTGGTTGCATCCTTTGAGGTTGCATTATTATCAGGGAGATCATTTTATCGATTAATCATAATGGTCTTTTGCTTTGACAGATAGGAGGACTAAATCCAGAGCTCTGCAGGTTGCTTAAAACCGATTCTTCCACAAATTTTGCGCTTTCCCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCCAGTGGTCTTATACCTTTTTTCTTATGTGCTACCGTAAGAATTAAAGTCCTCTTATGCTAGTTTCTAATAAATTACTTTGCCGTGCATTACACGCTTAATAGTCCAGCTTTGTTATGTGTGTGTGTTCCTTATATCCAATATTTTTCTTCTTTTAATTTATGTATCTTACTAGTATGATGGGTTTGCAAATTAGAAAGTGCTCGGCTCATACAATCATTGGGTCAAGGGATAATATATCTTTCTATGTGTTGTTGTAAGAGAATTCTTTCTTCTTTTGTTAGATGCTGGGACACAGATGTCCTTCCATTAACTGCTTAGTCTCATGAAATTACACTCTTTCAGATCTTAAATTGTGCATGCAAGGAGATTCTGTGTCAAAATATTTTGCATGTTGACTTTTATATAGATGTTAAATCTGAAGTTGTACTAAATAGGTGATAAACATGGGGAATTTTACCAACTAAAACTCTATGGTTGGTACTAATGTTTGTTCTGTATTTCTTGTTGGAGATGTTTCTGAATATTCAAATCAAGTTGAGATGGCTATTAAGTTTTCGCGTTGACTGCATTCACTACATTTTATGTGTGCAGGTTGGTACTACTTCATCAACAGCTGTTGATCCTCTACCTGCATTGGCAAAAGTCACTAAGGTAATGTCTTTGATTTAATTGATAAGCAAACTTACTAGTATAACAATCAAGGCATTGTAGTGTGGATACTAACTAAAGTCAAAGTCCAAATAGTTGAAAGAATTATGTGAGTCCTAAGTAACTAGGAAGACAACTAGATAGATGAAAAATAGAAATGATTATGCCGTAAGTTAGAAACCCAAGAAGATAACAATACATGTGGAACATAAAAAATAAACATTTTAGACAGAGTAATAAGTGTTACCAAAAGTTTTCACAAAATGGTTGTACAAATATCATTACTTTTTAGACATGGATTTGATAACGGTCACGCTATGCCATTTCTTGGAAGATTCCCTATGAAATGACCAACATAAAATTGATAAGTGTTTTGAGTGCATCTTAGAGAGTGATATAATCTGATAATACTCGGTTATGGGTGTCTTATTGGTAGCCCAACAACATTTGGTTTCATGTGGATGCTGCGTATGCTGGAAGTGCTTGTATATGTCCAGAGTACCGCCACTTCATTGATGGGGTTGAAGAAGCAGATTCATTTAACATGAATGCACATAAATGGTTCCTTACTAACTTCGACTGTTCAGTGCTTTGGGTTAAGGTATCCATAATATCTTTCTAAATGTCACTTCTGAAACTTTATTTCTAACATTTCATTTTACTTTATAAACAAAAATATAAGTTGATATGTGTTGATACAGGACAGAAGTGCTTTGATTCAGTCGCTGTCTACAAATCCAGAATTTCTGAAAAATAAGGTAGGTTTCTATTTGCATGTTTGTAGCTTGTATTAAAATTTTGTGACAGAAGTGCCATTGTTAATGTGAAGTCTTTTTTTGTTGGTATGTTTTACGGGAAATCATGATTCTTAGGAATGTTTATAAGAAATTAAGATTCCTAGTTATCCCCCTGACAAACATATTCTCTTCCTCTACTGTTCATGGATTGGGTCCTATACTGAGTAAACAGGGTCGTTTGGCTTAAGTTTCTTAAACAGGAAGCATATCTTTCAAAATGTTGCAGCTTAAGTCCTTGTCTAATTGTGTGCTTATGGTATTGAATGTCCAGGCCTCTCAAGAAAACACGGTCATAGATTACAAAGACTGGCAAATTCCTCTTGGGCGTCGGTTTAGGTGCGTCTTTGAAATTTTTCTTTTAGAAAACCATGTTTTTGCTCTCTATTAACAGACATACATCTGTGTCTGTGGTGTTCAGCATCTGCTCATGCATAAATTATCATTATTCATTCATTGGGACTCATAATCCGTTTTGATGTGATCATGATTTGTAATGTTTCTTTGATTTTTATTTTTATGGATTTATATATATGTAGTTGGTTTTTCAGTTATGACTTTTATTAAATCCTTTGTACCGCTATCACTTTTTAATAAAAAAAAATACACATTAAAGATCCATAATTACCGTCACACGTGTAACTTAAACTTGCCTGCTAACCTACACTGGGCTCCAGATCACTAAAACTGTGGATGGTGATGCGACTCTATGGATTAGAAGGCCTGCGAACTCACATAAGAAACCACATTGCAATGGCAGCTTATTTTGAGGAGCTTGTTGTTCAAGACACTAGATTCAAGGTACTCTTTGTTCTAGGACAAATAGCATAATGCATCATATGTACAAGTGTAACCTGGCATTAGAGTTTCGCTCTAAATAATTTGTTCATTGTCAAAACATGCATTTCTTATCTTAATTACTTACTGTATTTAATTCTGTGCATAACCATGAAAAAAATGCATCAAATTTATATACTCAGGTTGTTGCGCCTCGAACATTCTCTTTAGTTTGTTTTCGCCTTTTGCCTTCCCCAAACTCTGAAGATAATGGCAATAAACTGAACCATGATCTACTCGACTCAGTAAATTCAACGGGAAGTGTTTTCATAACACATACGGTATGCATAAATTAACTTCTGGGTTTTGTTCTGTTTATCACCTATGTAATATGTTCTTCCCCTTGATGATAAACAATGTGTGCAGGTTTTATCAGGTGAGTACATTCTACGTTTCGCAGTAGGAGCACCGTTGACAGAAGTGAGGCATGTCAGTGCAGCGTGGCAGATTTTGCAAGAAAAAGCCACTGCTCTATTAGAGAGTTTATAG

Protein sequence

>MS.gene052379.t1

MDAEQLREQGHKMVDFIADYYKTIENFPVLSQVQPGYLGKLLPDSAPTHPESLQHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSVDGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKALLLPHDFFSTGQGGGVIQGTASEAVVVVLVAARDKILRAAGRNALPKLVTYASDQTHSALQKACQIGGLNPELCRLLKTDSSTNFALSPDVLSEAISNDIASGLIPFFLCATVGTTSSTAVDPLPALAKVTKPNNIWFHVDAAYAGSACICPEYRHFIDGVEEADSFNMNAHKWFLTNFDCSVLWVKDRSALIQSLSTNPEFLKNKASQENTVIDYKDWQIPLGRRFRSLKLWMVMRLYGLEGLRTHIRNHIAMAAYFEELVVQDTRFKVVAPRTFSLVCFRLLPSPNSEDNGNKLNHDLLDSVNSTGSVFITHTVLSGEYILRFAVGAPLTEVRHVSAAWQILQEKATALLESL