AlfalfaGEDB | MS.gene065358

M. sativa cultivar XinJiangDaYe / MS.gene065358

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065358.t1	XP_003625486.1	100	55	0	0	1	55	1	55	2.70E-21	111.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065358.t1	Q2HT99	100.0	55	0	0	1	55	1	55	2.0e-21	111.3

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene065358	0.842734	2.16E-58	-1.69E-46
MS.gene050563	MS.gene065358	0.808841	2.54E-50	-1.69E-46
MS.gene050584	MS.gene065358	0.870444	1.45E-66	-1.69E-46
MS.gene050585	MS.gene065358	0.83021	3.34E-55	-1.69E-46
MS.gene050587	MS.gene065358	0.835849	1.32E-56	-1.69E-46
MS.gene05157	MS.gene065358	0.823151	1.62E-53	-1.69E-46
MS.gene051789	MS.gene065358	0.853328	2.57E-61	-1.69E-46
MS.gene052142	MS.gene065358	0.847845	8.94E-60	-1.69E-46
MS.gene053074	MS.gene065358	0.850543	1.59E-60	-1.69E-46
MS.gene053383	MS.gene065358	0.840468	8.54E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065358.t1	MTR_7g099670	98.077	104	2	0	1	104	1	104	3.16e-60	179
MS.gene065358.t1	MTR_1g069085	68.000	50	14	2	1	49	1	49	5.67e-14	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 47 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGTGTATGTTGTTGT+TGG	0.463389	7.4:+10524801	MS.gene065358:CDS
AACTTCATGACATTTGCTGG+TGG	0.621619	7.4:+10524895	MS.gene065358:CDS
AAGAACTTCATGACATTTGC+TGG	0.375624	7.4:+10524892	MS.gene065358:CDS
ACATTTGCTGGTGGTTATTC+AGG	0.231052	7.4:+10524904	MS.gene065358:CDS
ACCAACTGATGCTGGTTTGA+AGG	0.518003	7.4:+10524864	MS.gene065358:CDS
AGAAATGTACCAACTGATGC+TGG	0.575990	7.4:+10524856	MS.gene065358:CDS
ATCGGTGGTGATTTAGGTGG+TGG	0.527781	7.4:+10524970	MS.gene065358:CDS
CAAATGTCATGAAGTTCTTC+TGG	0.354882	7.4:-10524888	None:intergenic
CCAAACCACCAAGTCCACCT+AGG	0.637542	7.4:-10524999	None:intergenic
CCACCTCCAATTCCACCAAA+AGG	0.542402	7.4:-10524946	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTCAGGAATAGGAAACAA+TGG	+	chr7.4:10524919-10524938	MS.gene065358:CDS	30.0%
AAAGTGGTGTATGTTGTTGT+TGG	+	chr7.4:10524801-10524820	MS.gene065358:CDS	35.0%
AAGAACTTCATGACATTTGC+TGG	+	chr7.4:10524892-10524911	MS.gene065358:CDS	35.0%
CAAATGTCATGAAGTTCTTC+TGG	-	chr7.4:10524891-10524910	None:intergenic	35.0%
AGAAATGTACCAACTGATGC+TGG	+	chr7.4:10524856-10524875	MS.gene065358:CDS	40.0%
GCTGGTGGTTATTCAGGAAT+AGG	+	chr7.4:10524910-10524929	MS.gene065358:CDS	45.0%
TCCTTCAAACCAGCATCAGT+TGG	-	chr7.4:10524868-10524887	None:intergenic	45.0%
ATCGGTGGTGATTTAGGTGG+TGG	+	chr7.4:10524970-10524989	MS.gene065358:CDS	50.0%
CCACCTCCAATTCCACCAAA+AGG	-	chr7.4:10524949-10524968	None:intergenic	50.0%
GGAATCGGTGGTGATTTAGG+TGG	+	chr7.4:10524967-10524986	MS.gene065358:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	10524796	10525110	10524796	ID=MS.gene065358
chr7.4	mRNA	10524796	10525110	10524796	ID=MS.gene065358.t1;Parent=MS.gene065358
chr7.4	exon	10524796	10525110	10524796	ID=MS.gene065358.t1.exon1;Parent=MS.gene065358.t1
chr7.4	CDS	10524796	10525110	10524796	ID=cds.MS.gene065358.t1;Parent=MS.gene065358.t1

Gene Sequence	>MS.gene065358 ATGGCAAAGTGGTGTATGTTGTTGTTGGTTCTTGCTCTTGTTGTGGCTACAACAAGTGCAAGAAATGTACCAACTGATGCTGGTTTGAAGGACCAGAAGAACTTCATGACATTTGCTGGTGGTTATTCAGGAATAGGAAACAATGGACTTCCTTTTGGTGGAATTGGAGGTGGAATCGGTGGTGATTTAGGTGGTGGTGGTGGCCTAGGTGGACTTGGTGGTTTGGGAGGACTTGGTGGGGTTGGTGGTGGAGCTGGTGGTGGTGTTGGAGGTGGTGTTGGAACTGGTGTTGGTGGTGTTCATCCTTTCCCTTAA
Protein sequence	>MS.gene065358.t1 MAKWCMLLLVLALVVATTSARNVPTDAGLKDQKNFMTFAGGYSGIGNNGLPFGGIGGGIGGDLGGGGGLGGLGGLGGLGGVGGGAGGGVGGGVGTGVGGVHPFP