Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066001.t1 | XP_003629898.1 | 93.4 | 183 | 12 | 0 | 57 | 239 | 52 | 234 | 1.10E-86 | 329.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066001.t1 | Q94AL8 | 53.6 | 192 | 70 | 4 | 57 | 239 | 44 | 225 | 2.4e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066001.t1 | G7L817 | 93.4 | 183 | 12 | 0 | 57 | 239 | 52 | 234 | 8.0e-87 | 329.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050553 | MS.gene066001 | 0.802909 | 4.49E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene066001 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene066001 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene066001 | 0.813758 | 2.18E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene066001 | 0.843961 | 1.02E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene066001 | 0.810308 | 1.23E-50 | -1.69E-46 |
| MS.gene059129 | MS.gene066001 | 0.818945 | 1.50E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene066001 | 0.805875 | 1.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066001.t1 | MTR_8g088110 | 88.841 | 233 | 23 | 2 | 9 | 239 | 3 | 234 | 1.59e-137 | 385 |
| MS.gene066001.t1 | MTR_8g078880 | 33.099 | 142 | 86 | 5 | 100 | 232 | 52 | 193 | 1.27e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066001.t1 | AT1G29395 | 47.368 | 228 | 99 | 5 | 16 | 234 | 5 | 220 | 2.52e-62 | 194 |
| MS.gene066001.t1 | AT1G29390 | 52.973 | 185 | 85 | 2 | 56 | 239 | 43 | 226 | 3.48e-62 | 194 |
| MS.gene066001.t1 | AT1G29390 | 53.409 | 176 | 72 | 2 | 74 | 239 | 8 | 183 | 1.42e-61 | 191 |
| MS.gene066001.t1 | AT4G37220 | 32.653 | 147 | 90 | 5 | 95 | 232 | 45 | 191 | 2.31e-14 | 69.7 |
| MS.gene066001.t1 | AT3G50830 | 38.281 | 128 | 74 | 4 | 117 | 239 | 72 | 199 | 1.84e-13 | 67.4 |
Find 52 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTGATTGCGGTGTATT+TGG | 0.202554 | 4.3:-13018514 | MS.gene066001:CDS |
| AATGGAACAATAAATGATTT+TGG | 0.211324 | 4.3:+13020012 | None:intergenic |
| GTCAGCATTCTTGGCACTTC+TGG | 0.222017 | 4.3:-13019738 | MS.gene066001:CDS |
| CGTCTCTTCTTTCATATTCC+AGG | 0.292869 | 4.3:-13019713 | MS.gene066001:intron |
| AAATCCGTTGGTGGTAGTTT+TGG | 0.300811 | 4.3:+13020287 | None:intergenic |
| GTAGAGATCCACTGAATATT+AGG | 0.308778 | 4.3:+13020225 | None:intergenic |
| CTCATGAGGCTGTGAGATTA+AGG | 0.311797 | 4.3:-13018658 | MS.gene066001:intron |
| ACCAAGAGTAACGCTATAAA+TGG | 0.318021 | 4.3:+13018692 | None:intergenic |
| CTGTTGTTCGGGTGCGGTTG+AGG | 0.353834 | 4.3:+13020503 | None:intergenic |
| TGGTGTGTGGTCAGCATTCT+TGG | 0.386108 | 4.3:-13019747 | MS.gene066001:CDS |
| AGATCCTTCACTCGTCATTA+CGG | 0.405245 | 4.3:-13020330 | MS.gene066001:CDS |
| GGGGCTTGCAAAGCAAATAA+TGG | 0.425620 | 4.3:+13019994 | None:intergenic |
| ATGATGATGGATCTGTTGTT+CGG | 0.455501 | 4.3:+13020491 | None:intergenic |
| CCTGAGGCATAGGGGATTGA+AGG | 0.457606 | 4.3:+13020438 | None:intergenic |
| ATTAGGAGTAGTGAAAGGAT+AGG | 0.461661 | 4.3:+13020242 | None:intergenic |
| GAAAGGATAGGGAGCGTAAG+AGG | 0.461907 | 4.3:+13020254 | None:intergenic |
| TGATGATGGATCTGTTGTTC+GGG | 0.465818 | 4.3:+13020492 | None:intergenic |
| TGGACATACAGAGGTAGATA+TGG | 0.467160 | 4.3:-13019767 | MS.gene066001:intron |
| ACATTTCTCAAGAACAAGCT+TGG | 0.467961 | 4.3:-13018484 | MS.gene066001:CDS |
| GCCATTTATAGCGTTACTCT+TGG | 0.480930 | 4.3:-13018693 | MS.gene066001:CDS |
| CCTTCAATCCCCTATGCCTC+AGG | 0.483755 | 4.3:-13020438 | MS.gene066001:intron |
| TTCAATTGTTTCCACCTTAG+CGG | 0.484293 | 4.3:-13018442 | MS.gene066001:CDS |
| TACCAGGTACCTGAGGCATA+GGG | 0.493016 | 4.3:+13020429 | None:intergenic |
| TTAGGAGTAGTGAAAGGATA+GGG | 0.507367 | 4.3:+13020243 | None:intergenic |
| ATCAATGACGTACTTTATCC+AGG | 0.519024 | 4.3:+13019957 | None:intergenic |
| ATGGATCTGTTGTTCGGGTG+CGG | 0.525574 | 4.3:+13020497 | None:intergenic |
| TGCATTTACAGTTGAAGTTG+AGG | 0.526115 | 4.3:+13020546 | None:intergenic |
| GTACCAGGTACCTGAGGCAT+AGG | 0.529583 | 4.3:+13020428 | None:intergenic |
| CGTGATTTCTTTATTGATTG+CGG | 0.531142 | 4.3:-13018523 | MS.gene066001:CDS |
| GTTTCCACCTTAGCGGTCAT+CGG | 0.533114 | 4.3:-13018435 | MS.gene066001:CDS |
| GAGAAGGAGAGCGATGATGA+TGG | 0.542559 | 4.3:+13020478 | None:intergenic |
| CGCAATCAATAAAGAAATCA+CGG | 0.554346 | 4.3:+13018524 | None:intergenic |
| TATTCCGTAATGACGAGTGA+AGG | 0.557475 | 4.3:+13020326 | None:intergenic |
| GCGAGTGCGAGGGTGAGAGA+AGG | 0.562288 | 4.3:+13020462 | None:intergenic |
| GGATTGAAGGTGCGAGTGCG+AGG | 0.574816 | 4.3:+13020451 | None:intergenic |
| TCACTACTCCTAATATTCAG+TGG | 0.580865 | 4.3:-13020233 | MS.gene066001:CDS |
| GATTGAAGGTGCGAGTGCGA+GGG | 0.588182 | 4.3:+13020452 | None:intergenic |
| TTTGCCAGGGACACAAAAGA+AGG | 0.594762 | 4.3:-13018549 | MS.gene066001:intron |
| GATACCGATGACCGCTAAGG+TGG | 0.607165 | 4.3:+13018431 | None:intergenic |
| CTTAATCTCACAGCCTCATG+AGG | 0.615359 | 4.3:+13018659 | None:intergenic |
| GGAAAACACACGAAATCCGT+TGG | 0.618951 | 4.3:+13020275 | None:intergenic |
| TTGGAGAAATCATTTGACCA+AGG | 0.622670 | 4.3:-13018465 | MS.gene066001:CDS |
| AAGTCCAAAACTACCACCAA+CGG | 0.628404 | 4.3:-13020291 | MS.gene066001:CDS |
| CTGGAATATGAAAGAAGAGA+CGG | 0.630891 | 4.3:+13019714 | None:intergenic |
| AGTGATACCGATGACCGCTA+AGG | 0.637419 | 4.3:+13018428 | None:intergenic |
| AAACACACGAAATCCGTTGG+TGG | 0.638061 | 4.3:+13020278 | None:intergenic |
| TGAATATTAGGAGTAGTGAA+AGG | 0.638291 | 4.3:+13020237 | None:intergenic |
| AACTCAGATGAGAAGCAACA+AGG | 0.646149 | 4.3:+13018398 | None:intergenic |
| AGGTGGAAACAATTGAACCT+TGG | 0.646271 | 4.3:+13018448 | None:intergenic |
| ACCAGGTACCTGAGGCATAG+GGG | 0.660783 | 4.3:+13020430 | None:intergenic |
| GGTGATTGTAGCTCCTCATG+AGG | 0.668319 | 4.3:-13018672 | MS.gene066001:CDS |
| ACAGAGGTAGATATGGTGTG+TGG | 0.705598 | 4.3:-13019760 | MS.gene066001:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAGATCAATAAA+AGG | + | chr4.3:13019210-13019229 | None:intergenic | 10.0% |
| !!! | TATTCTTTTTGAATATTAAT+TGG | - | chr4.3:13020236-13020255 | MS.gene066001:CDS | 10.0% |
| !! | AAAAAAGATAAAATTTCTTC+CGG | - | chr4.3:13020259-13020278 | MS.gene066001:CDS | 15.0% |
| !! | TAAACATGAGAATATAATTA+TGG | + | chr4.3:13019817-13019836 | None:intergenic | 15.0% |
| !! | TATTCAAAAAGAATAAAGAA+CGG | + | chr4.3:13020231-13020250 | None:intergenic | 15.0% |
| !! | TGTAAACAAATTCTTAAAAT+TGG | - | chr4.3:13019906-13019925 | MS.gene066001:intron | 15.0% |
| !!! | AGAATATAATTATGGATTAT+TGG | + | chr4.3:13019809-13019828 | None:intergenic | 15.0% |
| !!! | TCTAATTATTTTACACAAAT+TGG | - | chr4.3:13019218-13019237 | MS.gene066001:intron | 15.0% |
| !!! | TTTTTTCTCATACAAAAATT+CGG | - | chr4.3:13019880-13019899 | MS.gene066001:intron | 15.0% |
| !! | AATTTCTTAGAAAGAAATGT+AGG | + | chr4.3:13019758-13019777 | None:intergenic | 20.0% |
| !! | ATGAATATTCAAAATCTTGT+AGG | - | chr4.3:13018940-13018959 | MS.gene066001:intron | 20.0% |
| !! | ATTTCTTAGAAAGAAATGTA+GGG | + | chr4.3:13019757-13019776 | None:intergenic | 20.0% |
| !! | CAAAATGAAAAGGAAATAAA+CGG | + | chr4.3:13020008-13020027 | None:intergenic | 20.0% |
| !! | CTCTCTCAATTTAATTATTA+TGG | - | chr4.3:13018825-13018844 | MS.gene066001:intron | 20.0% |
| !! | TAAAATCTAAATCTTCTCAA+TGG | - | chr4.3:13019590-13019609 | MS.gene066001:intron | 20.0% |
| !! | TAATAATTAAATTGAGAGAG+AGG | + | chr4.3:13018825-13018844 | None:intergenic | 20.0% |
| !! | TATTGTTTACTTCTAACTAT+TGG | - | chr4.3:13019620-13019639 | MS.gene066001:intron | 20.0% |
| !! | TGAATATTCAAAATCTTGTA+GGG | - | chr4.3:13018941-13018960 | MS.gene066001:intron | 20.0% |
| !! | TTTGTATGAGAAAAAATGTT+TGG | + | chr4.3:13019876-13019895 | None:intergenic | 20.0% |
| !!! | AATGGAACAATAAATGATTT+TGG | + | chr4.3:13018996-13019015 | None:intergenic | 20.0% |
| !!! | AGTTTTTACTTTTCACTAAA+AGG | + | chr4.3:13019489-13019508 | None:intergenic | 20.0% |
| !!! | GAGAAGATTTAGATTTTAAA+TGG | + | chr4.3:13019588-13019607 | None:intergenic | 20.0% |
| !!! | GTTTTTACTTTTCACTAAAA+GGG | + | chr4.3:13019488-13019507 | None:intergenic | 20.0% |
| ! | AAGAGAATAACACTTATTCT+TGG | + | chr4.3:13019167-13019186 | None:intergenic | 25.0% |
| ! | ATATTAATACACTCCACATA+TGG | + | chr4.3:13020159-13020178 | None:intergenic | 25.0% |
| ! | ATCCATTGTACAAAATGAAA+AGG | + | chr4.3:13020018-13020037 | None:intergenic | 25.0% |
| ! | ATGAAATTTAGGAATCTTGA+GGG | - | chr4.3:13019351-13019370 | MS.gene066001:intron | 25.0% |
| ! | ATGTGGAGTGTATTAATATA+AGG | - | chr4.3:13020160-13020179 | MS.gene066001:intron | 25.0% |
| ! | GAACAAGAAAACAAAATACA+AGG | + | chr4.3:13019074-13019093 | None:intergenic | 25.0% |
| ! | TCAATAGTAACACATAGTTT+GGG | + | chr4.3:13020049-13020068 | None:intergenic | 25.0% |
| ! | TGTATAAGAGAATATATACC+TGG | + | chr4.3:13019313-13019332 | None:intergenic | 25.0% |
| ! | TGTGGAGTGTATTAATATAA+GGG | - | chr4.3:13020081-13020100 | MS.gene066001:intron | 25.0% |
| !! | GTAAGCAAATTCATGTTTTT+GGG | - | chr4.3:13020369-13020388 | MS.gene066001:intron | 25.0% |
| !! | TTCCTTTTCATTTTGTACAA+TGG | - | chr4.3:13020013-13020032 | MS.gene066001:CDS | 25.0% |
| !!! | GAAAACCAACATTTTGTTTT+AGG | - | chr4.3:13019431-13019450 | MS.gene066001:intron | 25.0% |
| !!! | GTTTTCACCACTTTTAATAA+AGG | + | chr4.3:13019417-13019436 | None:intergenic | 25.0% |
| !!! | TAAGCAAATTCATGTTTTTG+GGG | - | chr4.3:13020370-13020389 | MS.gene066001:intron | 25.0% |
| AAAAGAGTAGATGAGAATGT+AGG | + | chr4.3:13018602-13018621 | None:intergenic | 30.0% | |
| AATGAAAAGGAAATAAACGG+AGG | + | chr4.3:13020005-13020024 | None:intergenic | 30.0% | |
| AGGTTCCTAAAACAAAATGT+TGG | + | chr4.3:13019439-13019458 | None:intergenic | 30.0% | |
| ATATTAATACACTCCACAGT+TGG | + | chr4.3:13020079-13020098 | None:intergenic | 30.0% | |
| ATCAGAGAGAGGAAATAAAA+AGG | + | chr4.3:13018629-13018648 | None:intergenic | 30.0% | |
| CATAAATGAAGAACGAAAGA+CGG | + | chr4.3:13018901-13018920 | None:intergenic | 30.0% | |
| CATATGGCCTTTATTAAAAG+TGG | - | chr4.3:13019407-13019426 | MS.gene066001:intron | 30.0% | |
| CATGAAATTTAGGAATCTTG+AGG | - | chr4.3:13019350-13019369 | MS.gene066001:intron | 30.0% | |
| CGCAATCAATAAAGAAATCA+CGG | + | chr4.3:13020484-13020503 | None:intergenic | 30.0% | |
| CTGTGGAGTGTATTAATATA+AGG | - | chr4.3:13020080-13020099 | MS.gene066001:intron | 30.0% | |
| GAAAAGTAAAAACTGCAAAG+TGG | - | chr4.3:13019495-13019514 | MS.gene066001:intron | 30.0% | |
| GTCAATAGTAACACATAGTT+TGG | + | chr4.3:13020050-13020069 | None:intergenic | 30.0% | |
| GTGGAGTGTATTAATATAAG+GGG | - | chr4.3:13020082-13020101 | MS.gene066001:intron | 30.0% | |
| TAAATCTCAACAACACCATA+TGG | - | chr4.3:13019391-13019410 | MS.gene066001:intron | 30.0% | |
| TGAAATTTAGGAATCTTGAG+GGG | - | chr4.3:13019352-13019371 | MS.gene066001:intron | 30.0% | |
| TGAATATTAGGAGTAGTGAA+AGG | + | chr4.3:13018771-13018790 | None:intergenic | 30.0% | |
| TGTAATGAGAAAACTTGTAC+AGG | + | chr4.3:13019676-13019695 | None:intergenic | 30.0% | |
| ! | AACACATAGTTTGGGTATTT+TGG | + | chr4.3:13020041-13020060 | None:intergenic | 30.0% |
| ! | CACTTTTAATAAAGGCCATA+TGG | + | chr4.3:13019409-13019428 | None:intergenic | 30.0% |
| ! | CGTGATTTCTTTATTGATTG+CGG | - | chr4.3:13020482-13020501 | MS.gene066001:CDS | 30.0% |
| ! | GGTAAGCAAATTCATGTTTT+TGG | - | chr4.3:13020368-13020387 | MS.gene066001:intron | 30.0% |
| ! | TAAATAGGGTAAGTTGACAA+CGG | + | chr4.3:13020404-13020423 | None:intergenic | 30.0% |
| ! | TTTATTGATTGCGGTGTATT+TGG | - | chr4.3:13020491-13020510 | MS.gene066001:CDS | 30.0% |
| !! | ATCTTGTAGGGTTTTAATAC+TGG | - | chr4.3:13018953-13018972 | MS.gene066001:intron | 30.0% |
| !!! | ATTTTGTTTTAGGAACCTCA+GGG | - | chr4.3:13019441-13019460 | MS.gene066001:intron | 30.0% |
| ACATTTCTCAAGAACAAGCT+TGG | - | chr4.3:13020521-13020540 | MS.gene066001:CDS | 35.0% | |
| ACCAAGAGTAACGCTATAAA+TGG | + | chr4.3:13020316-13020335 | None:intergenic | 35.0% | |
| ACCTGGAATCAAAGAATATC+CGG | + | chr4.3:13020281-13020300 | None:intergenic | 35.0% | |
| ATCAATGACGTACTTTATCC+AGG | + | chr4.3:13019051-13019070 | None:intergenic | 35.0% | |
| ATTAATATAAGGGGCAACTG+TGG | - | chr4.3:13020171-13020190 | MS.gene066001:intron | 35.0% | |
| ATTAGGAGTAGTGAAAGGAT+AGG | + | chr4.3:13018766-13018785 | None:intergenic | 35.0% | |
| CATCATCATCATCATCGTTA+GGG | - | chr4.3:13018420-13018439 | MS.gene066001:CDS | 35.0% | |
| CTGGAATATGAAAGAAGAGA+CGG | + | chr4.3:13019294-13019313 | None:intergenic | 35.0% | |
| GAAATTTAGGAATCTTGAGG+GGG | - | chr4.3:13019353-13019372 | MS.gene066001:intron | 35.0% | |
| GTAGAGATCCACTGAATATT+AGG | + | chr4.3:13018783-13018802 | None:intergenic | 35.0% | |
| GTATTAATATAAGGGCAACC+CGG | - | chr4.3:13020089-13020108 | MS.gene066001:intron | 35.0% | |
| TAAAACACTTGAAACACTCC+TGG | - | chr4.3:13019946-13019965 | MS.gene066001:intron | 35.0% | |
| TAATACACTCCACATATGGT+GGG | + | chr4.3:13020155-13020174 | None:intergenic | 35.0% | |
| TACACAAATTGGACATACAG+AGG | - | chr4.3:13019229-13019248 | MS.gene066001:intron | 35.0% | |
| TCACTACTCCTAATATTCAG+TGG | - | chr4.3:13018772-13018791 | MS.gene066001:intron | 35.0% | |
| TCATCAGCACATAACAGATT+TGG | + | chr4.3:13018924-13018943 | None:intergenic | 35.0% | |
| TCATCATCATCATCATCGTT+AGG | - | chr4.3:13018419-13018438 | MS.gene066001:CDS | 35.0% | |
| TGCATTTACAGTTGAAGTTG+AGG | + | chr4.3:13018462-13018481 | None:intergenic | 35.0% | |
| TTAATACACTCCACATATGG+TGG | + | chr4.3:13020156-13020175 | None:intergenic | 35.0% | |
| TTAGGAGTAGTGAAAGGATA+GGG | + | chr4.3:13018765-13018784 | None:intergenic | 35.0% | |
| TTCAATTGTTTCCACCTTAG+CGG | - | chr4.3:13020563-13020582 | MS.gene066001:CDS | 35.0% | |
| TTGGAGAAATCATTTGACCA+AGG | - | chr4.3:13020540-13020559 | MS.gene066001:CDS | 35.0% | |
| ! | TAGCATAAGCCTTTTATGCT+AGG | - | chr4.3:13019521-13019540 | MS.gene066001:intron | 35.0% |
| ! | TCTACTCTCTTTTCCACAAT+AGG | - | chr4.3:13019724-13019743 | MS.gene066001:CDS | 35.0% |
| !! | AGGGTTTTAATACTGGCAAA+GGG | - | chr4.3:13018960-13018979 | MS.gene066001:intron | 35.0% |
| !! | ATGATGATGGATCTGTTGTT+CGG | + | chr4.3:13018517-13018536 | None:intergenic | 35.0% |
| !! | TAGGGTTTTAATACTGGCAA+AGG | - | chr4.3:13018959-13018978 | MS.gene066001:intron | 35.0% |
| !!! | AGGAGTGTTTCAAGTGTTTT+AGG | + | chr4.3:13019947-13019966 | None:intergenic | 35.0% |
| !!! | CATTTTGTTTTAGGAACCTC+AGG | - | chr4.3:13019440-13019459 | MS.gene066001:intron | 35.0% |
| AAGTCCAAAACTACCACCAA+CGG | - | chr4.3:13018714-13018733 | MS.gene066001:intron | 40.0% | |
| ACATCGTTATTCTCTTTGCC+AGG | - | chr4.3:13020442-13020461 | MS.gene066001:CDS | 40.0% | |
| AGATCCTTCACTCGTCATTA+CGG | - | chr4.3:13018675-13018694 | MS.gene066001:CDS | 40.0% | |
| AGGTGGAAACAATTGAACCT+TGG | + | chr4.3:13020560-13020579 | None:intergenic | 40.0% | |
| CATCGTTATTCTCTTTGCCA+GGG | - | chr4.3:13020443-13020462 | MS.gene066001:CDS | 40.0% | |
| CGTCTCTTCTTTCATATTCC+AGG | - | chr4.3:13019292-13019311 | MS.gene066001:intron | 40.0% | |
| GCCATTTATAGCGTTACTCT+TGG | - | chr4.3:13020312-13020331 | MS.gene066001:CDS | 40.0% | |
| TAATCCCTGCCTAGCATAAA+AGG | + | chr4.3:13019533-13019552 | None:intergenic | 40.0% | |
| TAGATGAGAATGTAGGTACC+AGG | + | chr4.3:13018595-13018614 | None:intergenic | 40.0% | |
| TATTCCGTAATGACGAGTGA+AGG | + | chr4.3:13018682-13018701 | None:intergenic | 40.0% | |
| TCCGGATATTCTTTGATTCC+AGG | - | chr4.3:13020277-13020296 | MS.gene066001:CDS | 40.0% | |
| TGGACATACAGAGGTAGATA+TGG | - | chr4.3:13019238-13019257 | MS.gene066001:intron | 40.0% | |
| ! | AGTGAAAAGAGTGCATCAGA+TGG | + | chr4.3:13019649-13019668 | None:intergenic | 40.0% |
| ! | ATAAGCCTTTTATGCTAGGC+AGG | - | chr4.3:13019525-13019544 | MS.gene066001:intron | 40.0% |
| ! | CTGATCGTGTTTCTGTTGTT+TGG | - | chr4.3:13018644-13018663 | MS.gene066001:intron | 40.0% |
| ! | GTAAGTTGACAACGGTTCAA+AGG | + | chr4.3:13020396-13020415 | None:intergenic | 40.0% |
| ! | TAAGCCTTTTATGCTAGGCA+GGG | - | chr4.3:13019526-13019545 | MS.gene066001:intron | 40.0% |
| !! | TGATGATGGATCTGTTGTTC+GGG | + | chr4.3:13018516-13018535 | None:intergenic | 40.0% |
| !!! | AAATCCGTTGGTGGTAGTTT+TGG | + | chr4.3:13018721-13018740 | None:intergenic | 40.0% |
| AAACACACGAAATCCGTTGG+TGG | + | chr4.3:13018730-13018749 | None:intergenic | 45.0% | |
| AATGGCAACTCAAGTTCACC+TGG | + | chr4.3:13020298-13020317 | None:intergenic | 45.0% | |
| ACAGAAACACGATCAGAGAG+AGG | + | chr4.3:13018640-13018659 | None:intergenic | 45.0% | |
| ACAGAGGTAGATATGGTGTG+TGG | - | chr4.3:13019245-13019264 | MS.gene066001:intron | 45.0% | |
| ACCATGGGAATCAAGTGAGA+TGG | + | chr4.3:13019977-13019996 | None:intergenic | 45.0% | |
| CGCATGAGCGCATGAAATTT+AGG | - | chr4.3:13019340-13019359 | MS.gene066001:intron | 45.0% | |
| CTCATGAGGCTGTGAGATTA+AGG | - | chr4.3:13020347-13020366 | MS.gene066001:intron | 45.0% | |
| CTTAATCTCACAGCCTCATG+AGG | + | chr4.3:13020349-13020368 | None:intergenic | 45.0% | |
| GAATCTTGAGGGGGTAACAA+TGG | - | chr4.3:13019362-13019381 | MS.gene066001:intron | 45.0% | |
| GGAAAACACACGAAATCCGT+TGG | + | chr4.3:13018733-13018752 | None:intergenic | 45.0% | |
| GGGGCTTGCAAAGCAAATAA+TGG | + | chr4.3:13019014-13019033 | None:intergenic | 45.0% | |
| TAGAATCAGTATGTGCCCTG+AGG | + | chr4.3:13019459-13019478 | None:intergenic | 45.0% | |
| TCAAGTGAGATGGATGAACC+AGG | + | chr4.3:13019967-13019986 | None:intergenic | 45.0% | |
| TCCATCTCACTTGATTCCCA+TGG | - | chr4.3:13019973-13019992 | MS.gene066001:CDS | 45.0% | |
| TTTGCCAGGGACACAAAAGA+AGG | - | chr4.3:13020456-13020475 | MS.gene066001:CDS | 45.0% | |
| ! | ATAAACGGAGGTGCAAACCA+TGG | + | chr4.3:13019993-13020012 | None:intergenic | 45.0% |
| ! | TAAACGGAGGTGCAAACCAT+GGG | + | chr4.3:13019992-13020011 | None:intergenic | 45.0% |
| ! | TATTGACTGCAAGCCAACTG+TGG | - | chr4.3:13020063-13020082 | MS.gene066001:intron | 45.0% |
| !!! | GGTGGTAGTTTTGGACTTGT+CGG | + | chr4.3:13018712-13018731 | None:intergenic | 45.0% |
| !!! | AGTTTTTTATTTTAATAAAT+AGG | + | chr4.3:13020419-13020438 | None:intergenic | 5.0% |
| !!! | GTTTTTTATTTTAATAAATA+GGG | + | chr4.3:13020418-13020437 | None:intergenic | 5.0% |
| ACTAAAGCTCCCACATACGC+AGG | - | chr4.3:13020115-13020134 | MS.gene066001:intron | 50.0% | |
| AGTGATACCGATGACCGCTA+AGG | + | chr4.3:13020580-13020599 | None:intergenic | 50.0% | |
| ATCCAGGCAAAAACAGCTGC+AGG | + | chr4.3:13019035-13019054 | None:intergenic | 50.0% | |
| ATGGATCTGTTGTTCGGGTG+CGG | + | chr4.3:13018511-13018530 | None:intergenic | 50.0% | |
| ATGTAGGTACCAGGTACCTG+AGG | + | chr4.3:13018586-13018605 | None:intergenic | 50.0% | |
| CTAAAGCTCCCACATACGCA+GGG | - | chr4.3:13020116-13020135 | MS.gene066001:intron | 50.0% | |
| GAGAAGGAGAGCGATGATGA+TGG | + | chr4.3:13018530-13018549 | None:intergenic | 50.0% | |
| GGTGATTGTAGCTCCTCATG+AGG | - | chr4.3:13020333-13020352 | MS.gene066001:intron | 50.0% | |
| GTCAGCATTCTTGGCACTTC+TGG | - | chr4.3:13019267-13019286 | MS.gene066001:intron | 50.0% | |
| GTTTCCACCTTAGCGGTCAT+CGG | - | chr4.3:13020570-13020589 | MS.gene066001:CDS | 50.0% | |
| TACCAGGTACCTGAGGCATA+GGG | + | chr4.3:13018579-13018598 | None:intergenic | 50.0% | |
| TCCAGGCAAAAACAGCTGCA+GGG | + | chr4.3:13019034-13019053 | None:intergenic | 50.0% | |
| TGGTGTGTGGTCAGCATTCT+TGG | - | chr4.3:13019258-13019277 | MS.gene066001:intron | 50.0% | |
| ! | ATGTGGGAGCTTTAGTGCAC+CGG | + | chr4.3:13020111-13020130 | None:intergenic | 50.0% |
| ! | GAAAGGATAGGGAGCGTAAG+AGG | + | chr4.3:13018754-13018773 | None:intergenic | 50.0% |
| ACCAGGTACCTGAGGCATAG+GGG | + | chr4.3:13018578-13018597 | None:intergenic | 55.0% | |
| CCAGGCAAAAACAGCTGCAG+GGG | + | chr4.3:13019033-13019052 | None:intergenic | 55.0% | |
| CCTGAGGCATAGGGGATTGA+AGG | + | chr4.3:13018570-13018589 | None:intergenic | 55.0% | |
| CCTTCAATCCCCTATGCCTC+AGG | - | chr4.3:13018567-13018586 | MS.gene066001:intron | 55.0% | |
| GATACCGATGACCGCTAAGG+TGG | + | chr4.3:13020577-13020596 | None:intergenic | 55.0% | |
| GGAAGAGGTCCCACCATATG+TGG | - | chr4.3:13020143-13020162 | MS.gene066001:intron | 55.0% | |
| GTACCAGGTACCTGAGGCAT+AGG | + | chr4.3:13018580-13018599 | None:intergenic | 55.0% | |
| GTAGGGTGACGCACCTATTG+TGG | + | chr4.3:13019740-13019759 | None:intergenic | 55.0% | |
| ! | CATATGGTGGGACCTCTTCC+CGG | + | chr4.3:13020143-13020162 | None:intergenic | 55.0% |
| ! | GATTGAAGGTGCGAGTGCGA+GGG | + | chr4.3:13018556-13018575 | None:intergenic | 55.0% |
| ! | GGCACCTTCTTTTGTGTCCC+TGG | + | chr4.3:13020463-13020482 | None:intergenic | 55.0% |
| ! | TGTGGGAGCTTTAGTGCACC+GGG | + | chr4.3:13020110-13020129 | None:intergenic | 55.0% |
| CTGTTGTTCGGGTGCGGTTG+AGG | + | chr4.3:13018505-13018524 | None:intergenic | 60.0% | |
| TCCCCTATGCCTCAGGTACC+TGG | - | chr4.3:13018574-13018593 | MS.gene066001:intron | 60.0% | |
| TTCCCGGACCCTGCGTATGT+GGG | + | chr4.3:13020127-13020146 | None:intergenic | 60.0% | |
| ! | GGATTGAAGGTGCGAGTGCG+AGG | + | chr4.3:13018557-13018576 | None:intergenic | 60.0% |
| !!! | CCCCTGCAGCTGTTTTTGCC+TGG | - | chr4.3:13019030-13019049 | MS.gene066001:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+AGG | - | chr4.3:13020128-13020147 | MS.gene066001:intron | 65.0% | |
| CTCCCACATACGCAGGGTCC+GGG | - | chr4.3:13020122-13020141 | MS.gene066001:intron | 65.0% | |
| CTTCCCGGACCCTGCGTATG+TGG | + | chr4.3:13020128-13020147 | None:intergenic | 65.0% | |
| GCGAGTGCGAGGGTGAGAGA+AGG | + | chr4.3:13018546-13018565 | None:intergenic | 65.0% | |
| GCTCCCACATACGCAGGGTC+CGG | - | chr4.3:13020121-13020140 | MS.gene066001:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13018401 | 13020626 | 13018401 | ID=MS.gene066001 |
| chr4.3 | mRNA | 13018401 | 13020626 | 13018401 | ID=MS.gene066001.t1;Parent=MS.gene066001 |
| chr4.3 | exon | 13020439 | 13020626 | 13020439 | ID=MS.gene066001.t1.exon1;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13020439 | 13020626 | 13020439 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| chr4.3 | exon | 13020213 | 13020350 | 13020213 | ID=MS.gene066001.t1.exon2;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13020213 | 13020350 | 13020213 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| chr4.3 | exon | 13019970 | 13020065 | 13019970 | ID=MS.gene066001.t1.exon3;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13019970 | 13020065 | 13019970 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| chr4.3 | exon | 13019714 | 13019778 | 13019714 | ID=MS.gene066001.t1.exon4;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13019714 | 13019778 | 13019714 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| chr4.3 | exon | 13018659 | 13018728 | 13018659 | ID=MS.gene066001.t1.exon5;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13018659 | 13018728 | 13018659 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| chr4.3 | exon | 13018401 | 13018563 | 13018401 | ID=MS.gene066001.t1.exon6;Parent=MS.gene066001.t1 |
| chr4.3 | CDS | 13018401 | 13018563 | 13018401 | ID=cds.MS.gene066001.t1;Parent=MS.gene066001.t1 |
| Gene Sequence |
| Protein sequence |
