Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066457.t1 | XP_013470473.1 | 98.5 | 410 | 6 | 0 | 1 | 410 | 75 | 484 | 4.80E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066457.t1 | Q9LZ72 | 61.8 | 406 | 135 | 4 | 1 | 403 | 76 | 464 | 9.7e-148 | 524.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066457.t1 | A0A072VS55 | 98.5 | 410 | 6 | 0 | 1 | 410 | 75 | 484 | 3.5e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene066457 | 0.812058 | 5.13E-51 | -1.69E-46 |
| MS.gene050139 | MS.gene066457 | 0.805679 | 1.19E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene066457 | 0.800463 | 1.42E-48 | -1.69E-46 |
| MS.gene052011 | MS.gene066457 | -0.819862 | 9.29E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene066457 | 0.824208 | 9.14E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene066457 | 0.839411 | 1.61E-57 | -1.69E-46 |
| MS.gene054012 | MS.gene066457 | 0.834124 | 3.59E-56 | -1.69E-46 |
| MS.gene054013 | MS.gene066457 | 0.832448 | 9.40E-56 | -1.69E-46 |
| MS.gene054183 | MS.gene066457 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene066457 | 0.811823 | 5.77E-51 | -1.69E-46 |
| MS.gene057929 | MS.gene066457 | 0.815008 | 1.15E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene066457 | 0.818739 | 1.68E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene066457 | 0.83248 | 9.23E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066457.t1 | MTR_1g115560 | 98.537 | 410 | 6 | 0 | 1 | 410 | 75 | 484 | 0.0 | 840 |
| MS.gene066457.t1 | MTR_4g062190 | 56.091 | 394 | 165 | 1 | 1 | 394 | 74 | 459 | 9.68e-168 | 479 |
| MS.gene066457.t1 | MTR_4g062270 | 56.091 | 394 | 156 | 2 | 1 | 394 | 74 | 450 | 2.16e-166 | 475 |
| MS.gene066457.t1 | MTR_4g062170 | 57.107 | 394 | 160 | 1 | 1 | 394 | 74 | 458 | 2.34e-165 | 473 |
| MS.gene066457.t1 | MTR_2g096210 | 55.721 | 402 | 156 | 4 | 1 | 394 | 74 | 461 | 3.96e-161 | 462 |
| MS.gene066457.t1 | MTR_7g118170 | 43.536 | 379 | 188 | 4 | 4 | 377 | 168 | 525 | 2.06e-109 | 332 |
| MS.gene066457.t1 | MTR_4g070270 | 42.820 | 383 | 191 | 4 | 4 | 382 | 146 | 504 | 7.24e-107 | 324 |
| MS.gene066457.t1 | MTR_5g056510 | 42.819 | 376 | 191 | 4 | 4 | 377 | 134 | 487 | 4.84e-105 | 320 |
| MS.gene066457.t1 | MTR_2g054940 | 42.216 | 379 | 194 | 4 | 4 | 379 | 148 | 504 | 9.40e-105 | 319 |
| MS.gene066457.t1 | MTR_1g110930 | 42.287 | 376 | 193 | 5 | 4 | 377 | 134 | 487 | 1.31e-104 | 318 |
| MS.gene066457.t1 | MTR_3g105550 | 40.682 | 381 | 209 | 4 | 1 | 377 | 166 | 533 | 1.12e-103 | 317 |
| MS.gene066457.t1 | MTR_1g076430 | 41.910 | 377 | 194 | 4 | 4 | 377 | 149 | 503 | 5.33e-103 | 315 |
| MS.gene066457.t1 | MTR_1g041085 | 40.849 | 377 | 198 | 5 | 4 | 377 | 155 | 509 | 1.33e-99 | 306 |
| MS.gene066457.t1 | MTR_2g007020 | 39.257 | 377 | 204 | 4 | 4 | 377 | 94 | 448 | 4.89e-94 | 290 |
| MS.gene066457.t1 | MTR_6g074880 | 37.922 | 385 | 209 | 6 | 1 | 379 | 107 | 467 | 6.81e-93 | 287 |
| MS.gene066457.t1 | MTR_4g054415 | 37.173 | 382 | 210 | 6 | 4 | 379 | 67 | 424 | 4.54e-92 | 284 |
| MS.gene066457.t1 | MTR_4g054630 | 37.173 | 382 | 210 | 6 | 4 | 379 | 108 | 465 | 5.97e-92 | 285 |
| MS.gene066457.t1 | MTR_7g081695 | 40.318 | 377 | 188 | 5 | 4 | 377 | 148 | 490 | 1.05e-91 | 292 |
| MS.gene066457.t1 | MTR_2g436480 | 37.403 | 385 | 209 | 6 | 4 | 381 | 93 | 452 | 1.48e-91 | 283 |
| MS.gene066457.t1 | MTR_6g032965 | 38.727 | 377 | 206 | 5 | 4 | 377 | 27 | 381 | 3.26e-91 | 281 |
| MS.gene066457.t1 | MTR_7g118160 | 42.042 | 333 | 162 | 3 | 50 | 377 | 110 | 416 | 4.46e-91 | 281 |
| MS.gene066457.t1 | MTR_4g113280 | 38.522 | 379 | 197 | 5 | 4 | 379 | 137 | 482 | 1.80e-89 | 279 |
| MS.gene066457.t1 | MTR_1g102290 | 38.503 | 374 | 196 | 5 | 18 | 377 | 130 | 483 | 2.50e-82 | 261 |
| MS.gene066457.t1 | MTR_3g072980 | 38.402 | 388 | 207 | 7 | 1 | 382 | 126 | 487 | 8.38e-82 | 259 |
| MS.gene066457.t1 | MTR_3g072940 | 38.402 | 388 | 207 | 7 | 1 | 382 | 126 | 487 | 1.02e-81 | 259 |
| MS.gene066457.t1 | MTR_2g013740 | 36.389 | 360 | 204 | 3 | 4 | 363 | 158 | 492 | 1.67e-77 | 249 |
| MS.gene066457.t1 | MTR_6g051440 | 38.918 | 388 | 205 | 7 | 1 | 382 | 125 | 486 | 1.26e-76 | 246 |
| MS.gene066457.t1 | MTR_4g054260 | 33.813 | 278 | 138 | 6 | 108 | 379 | 87 | 324 | 1.64e-47 | 165 |
| MS.gene066457.t1 | MTR_4g053905 | 35.000 | 180 | 89 | 4 | 206 | 380 | 3 | 159 | 7.04e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066457.t1 | AT5G04530 | 61.823 | 406 | 135 | 4 | 1 | 403 | 76 | 464 | 0.0 | 533 |
| MS.gene066457.t1 | AT2G28630 | 55.639 | 399 | 165 | 3 | 1 | 395 | 74 | 464 | 8.77e-162 | 464 |
| MS.gene066457.t1 | AT2G28630 | 55.639 | 399 | 165 | 3 | 1 | 395 | 74 | 464 | 8.77e-162 | 464 |
| MS.gene066457.t1 | AT1G07720 | 55.087 | 403 | 162 | 4 | 1 | 395 | 74 | 465 | 1.09e-156 | 451 |
| MS.gene066457.t1 | AT1G07720 | 55.087 | 403 | 162 | 4 | 1 | 395 | 117 | 508 | 1.20e-156 | 452 |
| MS.gene066457.t1 | AT1G01120 | 42.105 | 380 | 190 | 5 | 4 | 377 | 168 | 523 | 3.51e-107 | 326 |
| MS.gene066457.t1 | AT2G15090 | 42.216 | 379 | 189 | 5 | 4 | 377 | 123 | 476 | 6.44e-107 | 324 |
| MS.gene066457.t1 | AT1G19440 | 41.425 | 379 | 192 | 6 | 4 | 377 | 158 | 511 | 8.63e-106 | 322 |
| MS.gene066457.t1 | AT4G34510 | 41.953 | 379 | 197 | 4 | 1 | 377 | 125 | 482 | 2.32e-105 | 320 |
| MS.gene066457.t1 | AT4G34250 | 42.744 | 379 | 187 | 6 | 4 | 377 | 131 | 484 | 7.08e-105 | 319 |
| MS.gene066457.t1 | AT2G46720 | 40.106 | 379 | 200 | 4 | 4 | 377 | 106 | 462 | 9.77e-105 | 318 |
| MS.gene066457.t1 | AT2G16280 | 41.755 | 376 | 195 | 4 | 4 | 377 | 154 | 507 | 1.10e-103 | 317 |
| MS.gene066457.t1 | AT1G25450 | 41.489 | 376 | 196 | 5 | 4 | 377 | 130 | 483 | 2.05e-102 | 313 |
| MS.gene066457.t1 | AT2G26250 | 39.740 | 385 | 223 | 4 | 1 | 377 | 164 | 547 | 3.59e-101 | 311 |
| MS.gene066457.t1 | AT1G68530 | 40.957 | 376 | 198 | 5 | 4 | 377 | 135 | 488 | 4.23e-101 | 309 |
| MS.gene066457.t1 | AT4G34520 | 40.897 | 379 | 195 | 5 | 4 | 377 | 133 | 487 | 9.28e-101 | 309 |
| MS.gene066457.t1 | AT1G04220 | 41.514 | 383 | 194 | 7 | 4 | 377 | 151 | 512 | 1.46e-99 | 306 |
| MS.gene066457.t1 | AT5G43760 | 41.099 | 382 | 196 | 5 | 4 | 377 | 157 | 517 | 7.29e-98 | 302 |
| MS.gene066457.t1 | AT3G10280 | 38.786 | 379 | 198 | 5 | 4 | 377 | 106 | 455 | 9.39e-98 | 300 |
| MS.gene066457.t1 | AT2G26640 | 40.849 | 377 | 198 | 4 | 4 | 377 | 146 | 500 | 1.07e-97 | 301 |
| MS.gene066457.t1 | AT1G71160 | 39.894 | 376 | 201 | 5 | 4 | 377 | 93 | 445 | 2.50e-95 | 293 |
| MS.gene066457.t1 | AT5G49070 | 38.542 | 384 | 211 | 4 | 4 | 382 | 97 | 460 | 2.39e-90 | 281 |
| MS.gene066457.t1 | AT3G52160 | 31.593 | 383 | 196 | 5 | 3 | 385 | 20 | 336 | 1.26e-66 | 215 |
| MS.gene066457.t1 | AT3G52160 | 32.410 | 361 | 191 | 4 | 3 | 363 | 133 | 440 | 1.73e-65 | 216 |
| MS.gene066457.t1 | AT1G68530 | 39.506 | 243 | 145 | 2 | 4 | 246 | 135 | 375 | 1.57e-58 | 196 |
| MS.gene066457.t1 | AT5G49070 | 38.182 | 220 | 129 | 2 | 4 | 220 | 97 | 312 | 3.21e-43 | 154 |
Find 65 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAAAGATTCTCCCATTT+TGG | 0.117044 | 1.2:-85497468 | MS.gene066457:CDS |
| CTTCCTTCAAGAACGTTTCT+TGG | 0.199155 | 1.2:+85498087 | None:intergenic |
| TCCCAAAATGGGAGAATCTT+TGG | 0.263372 | 1.2:+85497466 | None:intergenic |
| GACAGTAAATTTACAGTCTA+TGG | 0.278528 | 1.2:-85497491 | MS.gene066457:CDS |
| AAAGGATTATTGAGTGTATC+TGG | 0.291860 | 1.2:+85496992 | None:intergenic |
| ATACTTCTGCTGGTGGATTA+TGG | 0.292782 | 1.2:-85497177 | MS.gene066457:CDS |
| CCTCCCAACATATTAAATTT+CGG | 0.325071 | 1.2:+85497340 | None:intergenic |
| AGCAGATTTAACAAGACTTT+TGG | 0.328960 | 1.2:+85497525 | None:intergenic |
| AACCTGACCAGTTCCCAAAA+TGG | 0.338184 | 1.2:+85497454 | None:intergenic |
| TTAAGTGTAATAATTGTGTT+TGG | 0.339072 | 1.2:-85497075 | MS.gene066457:CDS |
| GGTGGTAGGGCAGTTATTGA+TGG | 0.340936 | 1.2:-85497271 | MS.gene066457:CDS |
| GTCTTCAATCTTGCAGGAAT+GGG | 0.346369 | 1.2:-85497865 | MS.gene066457:CDS |
| AGTTATTGATGGGGTTGGTA+AGG | 0.349662 | 1.2:-85497260 | MS.gene066457:CDS |
| GTAAAAGTCTTCAATCTTGC+AGG | 0.353247 | 1.2:-85497871 | MS.gene066457:CDS |
| CTTAAAACCATGGTTAGTTC+AGG | 0.363565 | 1.2:-85498132 | None:intergenic |
| ATTTGTCTGATACTAATGTT+TGG | 0.369574 | 1.2:-85497039 | MS.gene066457:CDS |
| CCCAAAATGGGAGAATCTTT+GGG | 0.386365 | 1.2:+85497467 | None:intergenic |
| AAACCGAAATTTAATATGTT+GGG | 0.395378 | 1.2:-85497343 | MS.gene066457:CDS |
| AAAACCGAAATTTAATATGT+TGG | 0.405895 | 1.2:-85497344 | MS.gene066457:CDS |
| TAGGATGGCACTTCATCGTT+GGG | 0.405904 | 1.2:-85497203 | MS.gene066457:CDS |
| CAGAAGATCTTGGTTCTCAT+TGG | 0.411950 | 1.2:-85497759 | MS.gene066457:CDS |
| TTGATGATTAGTCTTGGAGC+TGG | 0.423250 | 1.2:-85497100 | MS.gene066457:CDS |
| GTTATTGATGGGGTTGGTAA+GGG | 0.442438 | 1.2:-85497259 | MS.gene066457:CDS |
| ACCTGACCAGTTCCCAAAAT+GGG | 0.447146 | 1.2:+85497455 | None:intergenic |
| GTGGTAGGGCAGTTATTGAT+GGG | 0.447295 | 1.2:-85497270 | MS.gene066457:CDS |
| ATATCTTAGCTTTGTGAGGT+TGG | 0.447838 | 1.2:-85496939 | MS.gene066457:CDS |
| TTGTGTTTGGGAAGTTATGA+AGG | 0.449292 | 1.2:-85497062 | MS.gene066457:CDS |
| TGTCCAAGAAACGTTCTTGA+AGG | 0.449388 | 1.2:-85498090 | MS.gene066457:CDS |
| TTTGTGTTCATCCTGGTGGT+AGG | 0.458457 | 1.2:-85497285 | MS.gene066457:CDS |
| TCATATGTGTCTTTAAGAGT+TGG | 0.461513 | 1.2:+85498054 | None:intergenic |
| AGAGGCTTAAGAAAGGTGAT+AGG | 0.463294 | 1.2:-85497126 | MS.gene066457:CDS |
| CATGTGTTTCAGTTTCAAGA+TGG | 0.463864 | 1.2:+85497636 | None:intergenic |
| TAAGTGTAATAATTGTGTTT+GGG | 0.472156 | 1.2:-85497074 | MS.gene066457:CDS |
| CGATGAAGTGCCATCCTAGC+TGG | 0.483902 | 1.2:+85497208 | None:intergenic |
| AGTCTTCAATCTTGCAGGAA+TGG | 0.484453 | 1.2:-85497866 | MS.gene066457:CDS |
| CACATGGAAAGAACACAGTA+TGG | 0.488505 | 1.2:-85497619 | MS.gene066457:CDS |
| TTGTGTTCATCCTGGTGGTA+GGG | 0.491562 | 1.2:-85497284 | MS.gene066457:CDS |
| CTAGGATGGCACTTCATCGT+TGG | 0.495311 | 1.2:-85497204 | MS.gene066457:CDS |
| GAAATTTAATATGTTGGGAG+GGG | 0.496012 | 1.2:-85497338 | MS.gene066457:CDS |
| CGTTGGGGTAATACTTCTGC+TGG | 0.498272 | 1.2:-85497187 | MS.gene066457:CDS |
| GTTGTGAGCACAGAAGATCT+TGG | 0.501224 | 1.2:-85497769 | MS.gene066457:CDS |
| TGATGATTAGTCTTGGAGCT+GGG | 0.508912 | 1.2:-85497099 | MS.gene066457:CDS |
| ACCATGGTTAGTTCAGGAAT+CGG | 0.511336 | 1.2:-85498126 | MS.gene066457:CDS |
| AAAACATATGAAAATTCACT+TGG | 0.515961 | 1.2:-85497796 | MS.gene066457:CDS |
| TGATCTTGAGCCAGCTAGGA+TGG | 0.522671 | 1.2:-85497218 | MS.gene066457:CDS |
| CCGAAATTTAATATGTTGGG+AGG | 0.531233 | 1.2:-85497340 | MS.gene066457:CDS |
| CGAAATTTAATATGTTGGGA+GGG | 0.532690 | 1.2:-85497339 | MS.gene066457:CDS |
| AAATTTAATATGTTGGGAGG+GGG | 0.535939 | 1.2:-85497337 | MS.gene066457:CDS |
| ATTATTCTTGCTGTGAGTGA+AGG | 0.536137 | 1.2:+85497919 | None:intergenic |
| AATATGATCTTGAGCCAGCT+AGG | 0.540062 | 1.2:-85497222 | MS.gene066457:CDS |
| TTACAATTGTTGCATACAAG+TGG | 0.555295 | 1.2:-85497581 | MS.gene066457:CDS |
| AGGGCAGTTATTGATGGGGT+TGG | 0.556135 | 1.2:-85497265 | MS.gene066457:CDS |
| ATACAAGTGGAAGATGAAGA+AGG | 0.560414 | 1.2:-85497568 | MS.gene066457:CDS |
| TGGGGTAATACTTCTGCTGG+TGG | 0.565909 | 1.2:-85497184 | MS.gene066457:CDS |
| TCAATAACTGCCCTACCACC+AGG | 0.573692 | 1.2:+85497274 | None:intergenic |
| ACAAGAATGTCTATTTCTGA+AGG | 0.580320 | 1.2:+85497970 | None:intergenic |
| CTTGGTTCTCATTGGTACTG+TGG | 0.585590 | 1.2:-85497751 | MS.gene066457:CDS |
| CTTGCTGTGAGTGAAGGTGC+TGG | 0.586342 | 1.2:+85497925 | None:intergenic |
| ACCGATTCCTGAACTAACCA+TGG | 0.589832 | 1.2:+85498125 | None:intergenic |
| ATGAATATCTTAGCTTTGTG+AGG | 0.604029 | 1.2:-85496943 | MS.gene066457:CDS |
| TCTTCAATCTTGCAGGAATG+GGG | 0.635113 | 1.2:-85497864 | MS.gene066457:CDS |
| CATCTTGAAACTGAAACACA+TGG | 0.639110 | 1.2:-85497635 | MS.gene066457:CDS |
| TGGTAGGGCAGTTATTGATG+GGG | 0.644981 | 1.2:-85497269 | MS.gene066457:CDS |
| AGGATGGCACTTCATCGTTG+GGG | 0.671813 | 1.2:-85497202 | MS.gene066457:CDS |
| GGATTATTGAGTGTATCTGG+AGG | 0.693373 | 1.2:+85496995 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATATGAAAATTCACT+TGG | - | chr1.2:85497240-85497259 | MS.gene066457:CDS | 20.0% |
| !! | AAAACCGAAATTTAATATGT+TGG | - | chr1.2:85497692-85497711 | MS.gene066457:CDS | 20.0% |
| !! | AAACCGAAATTTAATATGTT+GGG | - | chr1.2:85497693-85497712 | MS.gene066457:CDS | 20.0% |
| !! | AGTATGAAAAAAGTTGAATT+TGG | - | chr1.2:85497627-85497646 | MS.gene066457:CDS | 20.0% |
| !! | TAAGTGTAATAATTGTGTTT+GGG | - | chr1.2:85497962-85497981 | MS.gene066457:CDS | 20.0% |
| !! | TTAAGTGTAATAATTGTGTT+TGG | - | chr1.2:85497961-85497980 | MS.gene066457:CDS | 20.0% |
| !!! | CAATTATACTTTTCCTTAAA+AGG | + | chr1.2:85498065-85498084 | None:intergenic | 20.0% |
| !!! | CTTTTAAGGAAAAGTATAAT+TGG | - | chr1.2:85498063-85498082 | MS.gene066457:CDS | 20.0% |
| !!! | TTTATTTTGTTTTTGAACCT+TGG | - | chr1.2:85497657-85497676 | MS.gene066457:CDS | 20.0% |
| ! | ATTTGTCTGATACTAATGTT+TGG | - | chr1.2:85497997-85498016 | MS.gene066457:CDS | 25.0% |
| !! | GTTTTATAACCATTTTACCA+AGG | + | chr1.2:85497677-85497696 | None:intergenic | 25.0% |
| !! | TACACTCAATAATCCTTTTA+AGG | - | chr1.2:85498049-85498068 | MS.gene066457:CDS | 25.0% |
| !!! | AGAAACATGTTTTTTTGAAG+AGG | + | chr1.2:85497044-85497063 | None:intergenic | 25.0% |
| !!! | ATGGTATGTTTTAGGTTATA+TGG | - | chr1.2:85497878-85497897 | MS.gene066457:CDS | 25.0% |
| AAAGGATTATTGAGTGTATC+TGG | + | chr1.2:85498047-85498066 | None:intergenic | 30.0% | |
| AAATTTAATATGTTGGGAGG+GGG | - | chr1.2:85497699-85497718 | MS.gene066457:CDS | 30.0% | |
| CCTCCCAACATATTAAATTT+CGG | + | chr1.2:85497699-85497718 | None:intergenic | 30.0% | |
| CGAAATTTAATATGTTGGGA+GGG | - | chr1.2:85497697-85497716 | MS.gene066457:CDS | 30.0% | |
| GAAATTTAATATGTTGGGAG+GGG | - | chr1.2:85497698-85497717 | MS.gene066457:CDS | 30.0% | |
| GACAGTAAATTTACAGTCTA+TGG | - | chr1.2:85497545-85497564 | MS.gene066457:CDS | 30.0% | |
| GTTATATGGAAGCAAAAAAG+AGG | - | chr1.2:85497892-85497911 | MS.gene066457:CDS | 30.0% | |
| TTACAATTGTTGCATACAAG+TGG | - | chr1.2:85497455-85497474 | MS.gene066457:CDS | 30.0% | |
| ! | AGCAGATTTAACAAGACTTT+TGG | + | chr1.2:85497514-85497533 | None:intergenic | 30.0% |
| ! | GTTTTTGAACCTTGGTAAAA+TGG | - | chr1.2:85497665-85497684 | MS.gene066457:CDS | 30.0% |
| ! | TCATATGTGTCTTTAAGAGT+TGG | + | chr1.2:85496985-85497004 | None:intergenic | 30.0% |
| !! | ACAAGAATGTCTATTTCTGA+AGG | + | chr1.2:85497069-85497088 | None:intergenic | 30.0% |
| !! | ATGAATATCTTAGCTTTGTG+AGG | - | chr1.2:85498093-85498112 | MS.gene066457:CDS | 30.0% |
| !!! | AGGATTTTGATGATTAGTCT+TGG | - | chr1.2:85497930-85497949 | MS.gene066457:CDS | 30.0% |
| !!! | TGTTTTGTTTGTGAAAAGCA+TGG | + | chr1.2:85497364-85497383 | None:intergenic | 30.0% |
| ATACAAGTGGAAGATGAAGA+AGG | - | chr1.2:85497468-85497487 | MS.gene066457:CDS | 35.0% | |
| CATCTTGAAACTGAAACACA+TGG | - | chr1.2:85497401-85497420 | MS.gene066457:CDS | 35.0% | |
| CATGTGTTTCAGTTTCAAGA+TGG | + | chr1.2:85497403-85497422 | None:intergenic | 35.0% | |
| CCGAAATTTAATATGTTGGG+AGG | - | chr1.2:85497696-85497715 | MS.gene066457:CDS | 35.0% | |
| GCAAAAAAGAGGCTTAAGAA+AGG | - | chr1.2:85497903-85497922 | MS.gene066457:CDS | 35.0% | |
| GTAAAAGTCTTCAATCTTGC+AGG | - | chr1.2:85497165-85497184 | MS.gene066457:CDS | 35.0% | |
| TTGTGTTTGGGAAGTTATGA+AGG | - | chr1.2:85497974-85497993 | MS.gene066457:CDS | 35.0% | |
| ! | ATTATTCTTGCTGTGAGTGA+AGG | + | chr1.2:85497120-85497139 | None:intergenic | 35.0% |
| ! | GAACATTTTTGTGTTCATCC+TGG | - | chr1.2:85497744-85497763 | MS.gene066457:CDS | 35.0% |
| !! | ATATCTTAGCTTTGTGAGGT+TGG | - | chr1.2:85498097-85498116 | MS.gene066457:CDS | 35.0% |
| !! | GAGGTTGGATTTTAGTACTA+TGG | - | chr1.2:85498112-85498131 | MS.gene066457:CDS | 35.0% |
| !!! | GGTGGATTATGGTATGTTTT+AGG | - | chr1.2:85497870-85497889 | MS.gene066457:CDS | 35.0% |
| AATATGATCTTGAGCCAGCT+AGG | - | chr1.2:85497814-85497833 | MS.gene066457:CDS | 40.0% | |
| AGAGGCTTAAGAAAGGTGAT+AGG | - | chr1.2:85497910-85497929 | MS.gene066457:CDS | 40.0% | |
| AGTCTTCAATCTTGCAGGAA+TGG | - | chr1.2:85497170-85497189 | MS.gene066457:CDS | 40.0% | |
| CACATGGAAAGAACACAGTA+TGG | - | chr1.2:85497417-85497436 | MS.gene066457:CDS | 40.0% | |
| CCCAAAATGGGAGAATCTTT+GGG | + | chr1.2:85497572-85497591 | None:intergenic | 40.0% | |
| CTTCCTTCAAGAACGTTTCT+TGG | + | chr1.2:85496952-85496971 | None:intergenic | 40.0% | |
| GGATTATTGAGTGTATCTGG+AGG | + | chr1.2:85498044-85498063 | None:intergenic | 40.0% | |
| GGGGGTTTGAATTTGAAAAG+TGG | - | chr1.2:85497717-85497736 | MS.gene066457:CDS | 40.0% | |
| GTCTTCAATCTTGCAGGAAT+GGG | - | chr1.2:85497171-85497190 | MS.gene066457:CDS | 40.0% | |
| TCCCAAAATGGGAGAATCTT+TGG | + | chr1.2:85497573-85497592 | None:intergenic | 40.0% | |
| TCTTCAATCTTGCAGGAATG+GGG | - | chr1.2:85497172-85497191 | MS.gene066457:CDS | 40.0% | |
| TGTCCAAGAAACGTTCTTGA+AGG | - | chr1.2:85496946-85496965 | MS.gene066457:CDS | 40.0% | |
| ! | CAGAAGATCTTGGTTCTCAT+TGG | - | chr1.2:85497277-85497296 | MS.gene066457:CDS | 40.0% |
| ! | CATTTTTGTGTTCATCCTGG+TGG | - | chr1.2:85497747-85497766 | MS.gene066457:CDS | 40.0% |
| ! | CCCAAAGATTCTCCCATTTT+GGG | - | chr1.2:85497569-85497588 | MS.gene066457:CDS | 40.0% |
| ! | GAAGATGAAGAAGGTTTTGC+AGG | - | chr1.2:85497477-85497496 | MS.gene066457:CDS | 40.0% |
| ! | TCCCAAAGATTCTCCCATTT+TGG | - | chr1.2:85497568-85497587 | MS.gene066457:CDS | 40.0% |
| !! | AGTTATTGATGGGGTTGGTA+AGG | - | chr1.2:85497776-85497795 | MS.gene066457:CDS | 40.0% |
| !! | ATACTTCTGCTGGTGGATTA+TGG | - | chr1.2:85497859-85497878 | MS.gene066457:CDS | 40.0% |
| !! | GTTATTGATGGGGTTGGTAA+GGG | - | chr1.2:85497777-85497796 | MS.gene066457:CDS | 40.0% |
| !! | TGATGATTAGTCTTGGAGCT+GGG | - | chr1.2:85497937-85497956 | MS.gene066457:CDS | 40.0% |
| !! | TTGATGATTAGTCTTGGAGC+TGG | - | chr1.2:85497936-85497955 | MS.gene066457:CDS | 40.0% |
| !!! | TCTAACTGTCTTTTTCGAGC+AGG | - | chr1.2:85497330-85497349 | MS.gene066457:CDS | 40.0% |
| AACCTGACCAGTTCCCAAAA+TGG | + | chr1.2:85497585-85497604 | None:intergenic | 45.0% | |
| ACCTGACCAGTTCCCAAAAT+GGG | + | chr1.2:85497584-85497603 | None:intergenic | 45.0% | |
| GTGGTAGGGCAGTTATTGAT+GGG | - | chr1.2:85497766-85497785 | MS.gene066457:CDS | 45.0% | |
| GTTGTGAGCACAGAAGATCT+TGG | - | chr1.2:85497267-85497286 | MS.gene066457:CDS | 45.0% | |
| TAGGATGGCACTTCATCGTT+GGG | - | chr1.2:85497833-85497852 | MS.gene066457:CDS | 45.0% | |
| TGGTAGGGCAGTTATTGATG+GGG | - | chr1.2:85497767-85497786 | MS.gene066457:CDS | 45.0% | |
| TTGTGTTCATCCTGGTGGTA+GGG | - | chr1.2:85497752-85497771 | MS.gene066457:CDS | 45.0% | |
| TTTGTGTTCATCCTGGTGGT+AGG | - | chr1.2:85497751-85497770 | MS.gene066457:CDS | 45.0% | |
| ! | CTTGGTTCTCATTGGTACTG+TGG | - | chr1.2:85497285-85497304 | MS.gene066457:CDS | 45.0% |
| !! | GATTCTCCCATTTTGGGAAC+TGG | - | chr1.2:85497575-85497594 | MS.gene066457:CDS | 45.0% |
| !!! | AACTGTCTTTTTCGAGCAGG+TGG | - | chr1.2:85497333-85497352 | MS.gene066457:CDS | 45.0% |
| AGGATGGCACTTCATCGTTG+GGG | - | chr1.2:85497834-85497853 | MS.gene066457:CDS | 50.0% | |
| AGGGCAGTTATTGATGGGGT+TGG | - | chr1.2:85497771-85497790 | MS.gene066457:CDS | 50.0% | |
| CGTTGGGGTAATACTTCTGC+TGG | - | chr1.2:85497849-85497868 | MS.gene066457:CDS | 50.0% | |
| CTAGGATGGCACTTCATCGT+TGG | - | chr1.2:85497832-85497851 | MS.gene066457:CDS | 50.0% | |
| GGTGGTAGGGCAGTTATTGA+TGG | - | chr1.2:85497765-85497784 | MS.gene066457:CDS | 50.0% | |
| TCAATAACTGCCCTACCACC+AGG | + | chr1.2:85497765-85497784 | None:intergenic | 50.0% | |
| TGATCTTGAGCCAGCTAGGA+TGG | - | chr1.2:85497818-85497837 | MS.gene066457:CDS | 50.0% | |
| TGGGGTAATACTTCTGCTGG+TGG | - | chr1.2:85497852-85497871 | MS.gene066457:CDS | 50.0% | |
| !! | TCCCATTTTGGGAACTGGTC+AGG | - | chr1.2:85497580-85497599 | MS.gene066457:CDS | 50.0% |
| ! | CGATGAAGTGCCATCCTAGC+TGG | + | chr1.2:85497831-85497850 | None:intergenic | 55.0% |
| ! | CTTGCTGTGAGTGAAGGTGC+TGG | + | chr1.2:85497114-85497133 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 85496913 | 85498145 | 85496913 | ID=MS.gene066457 |
| chr1.2 | mRNA | 85496913 | 85498145 | 85496913 | ID=MS.gene066457.t1;Parent=MS.gene066457 |
| chr1.2 | exon | 85496913 | 85498145 | 85496913 | ID=MS.gene066457.t1.exon1;Parent=MS.gene066457.t1 |
| chr1.2 | CDS | 85496913 | 85498145 | 85496913 | ID=cds.MS.gene066457.t1;Parent=MS.gene066457.t1 |
| Gene Sequence |
| Protein sequence |
