Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066510.t1 | XP_003603163.1 | 98.4 | 445 | 7 | 0 | 1 | 445 | 1 | 445 | 1.70E-221 | 778.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066510.t1 | Q9SF32 | 31.5 | 222 | 129 | 6 | 64 | 270 | 67 | 280 | 4.9e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066510.t1 | G7J7P3 | 98.4 | 445 | 7 | 0 | 1 | 445 | 1 | 445 | 1.2e-221 | 778.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene066510 | 0.815912 | 7.25E-52 | -1.69E-46 |
| MS.gene052367 | MS.gene066510 | 0.807474 | 4.97E-50 | -1.69E-46 |
| MS.gene053348 | MS.gene066510 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene066510 | 0.811781 | 5.90E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene066510 | 0.809474 | 1.86E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene066510 | 0.820672 | 6.06E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene066510 | 0.845564 | 3.75E-59 | -1.69E-46 |
| MS.gene056041 | MS.gene066510 | 0.867668 | 1.15E-65 | -1.69E-46 |
| MS.gene056042 | MS.gene066510 | 0.820052 | 8.41E-53 | -1.69E-46 |
| MS.gene05640 | MS.gene066510 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene066510 | 0.804614 | 1.98E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene066510 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene066510 | 0.820362 | 7.14E-53 | -1.69E-46 |
| MS.gene060565 | MS.gene066510 | 0.809152 | 2.18E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene066510 | 0.806365 | 8.52E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene066510 | 0.809958 | 1.46E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene066510 | 0.808323 | 3.28E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066510.t1 | MTR_3g104570 | 98.427 | 445 | 7 | 0 | 1 | 445 | 1 | 445 | 0.0 | 905 |
| MS.gene066510.t1 | MTR_8g017570 | 44.091 | 440 | 218 | 10 | 1 | 432 | 1 | 420 | 1.22e-75 | 243 |
| MS.gene066510.t1 | MTR_2g099780 | 44.780 | 431 | 188 | 13 | 1 | 427 | 1 | 385 | 6.31e-73 | 236 |
| MS.gene066510.t1 | MTR_4g050480 | 46.953 | 279 | 124 | 6 | 1 | 268 | 1 | 266 | 4.74e-59 | 200 |
| MS.gene066510.t1 | MTR_4g050480 | 47.122 | 278 | 124 | 6 | 1 | 268 | 1 | 265 | 6.42e-58 | 197 |
| MS.gene066510.t1 | MTR_6g033415 | 39.016 | 305 | 151 | 11 | 89 | 380 | 105 | 387 | 3.34e-42 | 154 |
| MS.gene066510.t1 | MTR_1g095740 | 43.503 | 177 | 90 | 4 | 90 | 263 | 140 | 309 | 1.89e-37 | 142 |
| MS.gene066510.t1 | MTR_8g024540 | 43.814 | 194 | 81 | 5 | 88 | 265 | 124 | 305 | 1.56e-36 | 141 |
| MS.gene066510.t1 | MTR_7g100790 | 42.478 | 226 | 106 | 7 | 50 | 265 | 64 | 275 | 3.03e-35 | 136 |
| MS.gene066510.t1 | MTR_1g066800 | 44.503 | 191 | 86 | 6 | 72 | 259 | 103 | 276 | 1.23e-34 | 134 |
| MS.gene066510.t1 | MTR_1g066800 | 44.503 | 191 | 86 | 6 | 72 | 259 | 108 | 281 | 1.56e-34 | 134 |
| MS.gene066510.t1 | MTR_2g015370 | 35.600 | 250 | 122 | 8 | 93 | 332 | 65 | 285 | 1.35e-32 | 125 |
| MS.gene066510.t1 | MTR_2g078210 | 35.514 | 214 | 127 | 6 | 58 | 270 | 42 | 245 | 6.66e-32 | 124 |
| MS.gene066510.t1 | MTR_2g078210 | 39.106 | 179 | 99 | 5 | 93 | 270 | 16 | 185 | 1.39e-31 | 121 |
| MS.gene066510.t1 | MTR_4g087420 | 30.114 | 352 | 207 | 12 | 56 | 386 | 112 | 445 | 2.58e-30 | 123 |
| MS.gene066510.t1 | MTR_0047s0040 | 31.466 | 232 | 131 | 5 | 50 | 276 | 60 | 268 | 1.89e-28 | 117 |
| MS.gene066510.t1 | MTR_1g007920 | 39.604 | 202 | 101 | 3 | 86 | 267 | 92 | 292 | 1.21e-25 | 108 |
| MS.gene066510.t1 | MTR_1g007920 | 39.604 | 202 | 101 | 3 | 86 | 267 | 117 | 317 | 1.52e-25 | 108 |
| MS.gene066510.t1 | MTR_1g103070 | 48.571 | 105 | 52 | 1 | 90 | 192 | 135 | 239 | 2.53e-23 | 102 |
| MS.gene066510.t1 | MTR_3g020990 | 46.903 | 113 | 52 | 2 | 104 | 215 | 103 | 208 | 6.30e-22 | 94.7 |
| MS.gene066510.t1 | MTR_7g114700 | 29.947 | 187 | 108 | 3 | 86 | 268 | 130 | 297 | 2.50e-21 | 96.3 |
| MS.gene066510.t1 | MTR_8g014580 | 62.162 | 74 | 28 | 0 | 85 | 158 | 120 | 193 | 5.13e-21 | 95.1 |
| MS.gene066510.t1 | MTR_3g091560 | 38.947 | 190 | 108 | 4 | 91 | 279 | 112 | 294 | 7.95e-21 | 94.7 |
| MS.gene066510.t1 | MTR_8g074730 | 40.000 | 140 | 74 | 3 | 28 | 159 | 2 | 139 | 1.37e-20 | 88.2 |
| MS.gene066510.t1 | MTR_8g102400 | 39.665 | 179 | 81 | 6 | 1 | 155 | 1 | 176 | 2.86e-20 | 93.2 |
| MS.gene066510.t1 | MTR_0019s0070 | 56.098 | 82 | 36 | 0 | 86 | 167 | 112 | 193 | 1.30e-19 | 91.3 |
| MS.gene066510.t1 | MTR_2g100740 | 36.628 | 172 | 89 | 5 | 1 | 159 | 1 | 165 | 1.70e-18 | 87.0 |
| MS.gene066510.t1 | MTR_1g101330 | 30.892 | 314 | 157 | 10 | 90 | 385 | 114 | 385 | 2.14e-18 | 87.4 |
| MS.gene066510.t1 | MTR_4g108140 | 33.158 | 190 | 97 | 5 | 74 | 262 | 82 | 242 | 5.88e-18 | 86.7 |
| MS.gene066510.t1 | MTR_4g108140 | 33.158 | 190 | 97 | 5 | 74 | 262 | 83 | 243 | 6.86e-18 | 86.7 |
| MS.gene066510.t1 | MTR_4g102840 | 33.511 | 188 | 99 | 6 | 1 | 180 | 1 | 170 | 1.71e-17 | 84.7 |
| MS.gene066510.t1 | MTR_7g114870 | 56.716 | 67 | 29 | 0 | 93 | 159 | 108 | 174 | 2.23e-17 | 84.0 |
| MS.gene066510.t1 | MTR_1g041430 | 47.222 | 108 | 52 | 1 | 90 | 192 | 110 | 217 | 5.82e-17 | 83.2 |
| MS.gene066510.t1 | MTR_1g051810 | 32.847 | 137 | 81 | 2 | 93 | 220 | 107 | 241 | 7.26e-13 | 70.1 |
| MS.gene066510.t1 | MTR_5g038620 | 34.722 | 144 | 72 | 5 | 50 | 191 | 84 | 207 | 7.92e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066510.t1 | AT2G26180 | 59.502 | 442 | 147 | 12 | 1 | 439 | 1 | 413 | 9.78e-150 | 432 |
| MS.gene066510.t1 | AT1G72670 | 45.516 | 446 | 190 | 14 | 1 | 437 | 1 | 402 | 1.05e-94 | 291 |
| MS.gene066510.t1 | AT1G17480 | 37.671 | 438 | 188 | 14 | 1 | 430 | 1 | 361 | 3.15e-65 | 214 |
| MS.gene066510.t1 | AT3G22190 | 45.161 | 279 | 122 | 8 | 1 | 268 | 1 | 259 | 4.65e-49 | 173 |
| MS.gene066510.t1 | AT3G22190 | 45.161 | 279 | 122 | 8 | 1 | 268 | 1 | 259 | 4.65e-49 | 173 |
| MS.gene066510.t1 | AT3G22190 | 45.161 | 279 | 122 | 8 | 1 | 268 | 1 | 259 | 4.65e-49 | 173 |
| MS.gene066510.t1 | AT3G22190 | 45.161 | 279 | 122 | 8 | 1 | 268 | 1 | 259 | 4.65e-49 | 173 |
| MS.gene066510.t1 | AT5G03040 | 43.627 | 204 | 105 | 4 | 71 | 272 | 94 | 289 | 4.64e-41 | 152 |
| MS.gene066510.t1 | AT5G03040 | 43.627 | 204 | 105 | 4 | 71 | 272 | 94 | 289 | 4.64e-41 | 152 |
| MS.gene066510.t1 | AT5G03040 | 43.627 | 204 | 105 | 4 | 71 | 272 | 94 | 289 | 4.64e-41 | 152 |
| MS.gene066510.t1 | AT4G00820 | 33.668 | 398 | 180 | 15 | 89 | 443 | 130 | 486 | 2.68e-38 | 146 |
| MS.gene066510.t1 | AT1G01110 | 31.159 | 414 | 228 | 12 | 14 | 385 | 44 | 442 | 2.37e-36 | 140 |
| MS.gene066510.t1 | AT3G52290 | 39.674 | 184 | 102 | 2 | 90 | 273 | 107 | 281 | 4.55e-35 | 135 |
| MS.gene066510.t1 | AT3G15050 | 38.496 | 226 | 110 | 8 | 91 | 315 | 50 | 247 | 1.09e-32 | 124 |
| MS.gene066510.t1 | AT3G09710 | 38.839 | 224 | 108 | 7 | 64 | 269 | 67 | 279 | 1.31e-32 | 129 |
| MS.gene066510.t1 | AT3G49260 | 40.513 | 195 | 93 | 4 | 86 | 265 | 115 | 301 | 2.11e-32 | 128 |
| MS.gene066510.t1 | AT3G49260 | 40.000 | 195 | 93 | 4 | 86 | 265 | 115 | 300 | 2.34e-32 | 128 |
| MS.gene066510.t1 | AT3G49260 | 40.000 | 195 | 93 | 4 | 86 | 265 | 115 | 300 | 2.34e-32 | 128 |
| MS.gene066510.t1 | AT3G49260 | 40.000 | 195 | 93 | 4 | 86 | 265 | 115 | 300 | 2.34e-32 | 128 |
| MS.gene066510.t1 | AT3G09710 | 36.709 | 237 | 109 | 8 | 64 | 269 | 67 | 293 | 4.48e-31 | 124 |
| MS.gene066510.t1 | AT2G33990 | 37.853 | 177 | 99 | 4 | 90 | 265 | 46 | 212 | 1.35e-29 | 116 |
| MS.gene066510.t1 | AT4G10640 | 31.864 | 295 | 154 | 9 | 15 | 278 | 22 | 300 | 5.52e-27 | 112 |
| MS.gene066510.t1 | AT2G26410 | 35.028 | 177 | 106 | 4 | 89 | 263 | 146 | 315 | 1.75e-25 | 109 |
| MS.gene066510.t1 | AT2G26410 | 35.028 | 177 | 106 | 4 | 89 | 263 | 146 | 315 | 1.75e-25 | 109 |
| MS.gene066510.t1 | AT5G13460 | 31.897 | 232 | 120 | 8 | 58 | 284 | 86 | 284 | 6.73e-23 | 100 |
| MS.gene066510.t1 | AT2G43680 | 32.402 | 179 | 102 | 5 | 77 | 255 | 311 | 470 | 1.01e-21 | 98.6 |
| MS.gene066510.t1 | AT2G43680 | 32.402 | 179 | 102 | 5 | 77 | 255 | 311 | 470 | 1.01e-21 | 98.6 |
| MS.gene066510.t1 | AT2G43680 | 32.402 | 179 | 102 | 5 | 77 | 255 | 311 | 470 | 1.01e-21 | 98.6 |
| MS.gene066510.t1 | AT2G43680 | 32.402 | 179 | 102 | 5 | 77 | 255 | 311 | 470 | 1.01e-21 | 98.6 |
| MS.gene066510.t1 | AT2G43680 | 32.402 | 179 | 102 | 5 | 77 | 255 | 312 | 471 | 1.08e-21 | 98.6 |
| MS.gene066510.t1 | AT4G14750 | 30.802 | 237 | 143 | 7 | 1 | 221 | 1 | 232 | 1.92e-21 | 96.3 |
| MS.gene066510.t1 | AT4G14750 | 30.802 | 237 | 143 | 7 | 1 | 221 | 60 | 291 | 3.61e-21 | 95.9 |
| MS.gene066510.t1 | AT4G14750 | 30.802 | 237 | 143 | 7 | 1 | 221 | 60 | 291 | 4.36e-21 | 95.5 |
| MS.gene066510.t1 | AT3G59690 | 34.641 | 153 | 92 | 4 | 81 | 231 | 160 | 306 | 8.97e-21 | 95.1 |
| MS.gene066510.t1 | AT3G59690 | 34.641 | 153 | 92 | 4 | 81 | 231 | 160 | 306 | 8.97e-21 | 95.1 |
| MS.gene066510.t1 | AT1G51960 | 33.173 | 208 | 117 | 7 | 1 | 198 | 1 | 196 | 8.40e-19 | 87.8 |
| MS.gene066510.t1 | AT4G23060 | 57.333 | 75 | 32 | 0 | 91 | 165 | 167 | 241 | 2.27e-18 | 87.8 |
| MS.gene066510.t1 | AT3G16490 | 49.451 | 91 | 38 | 2 | 90 | 180 | 106 | 188 | 2.86e-18 | 86.7 |
| MS.gene066510.t1 | AT1G18840 | 48.052 | 77 | 40 | 0 | 88 | 164 | 106 | 182 | 8.04e-18 | 86.3 |
| MS.gene066510.t1 | AT1G18840 | 48.052 | 77 | 40 | 0 | 88 | 164 | 106 | 182 | 8.04e-18 | 86.3 |
| MS.gene066510.t1 | AT1G18840 | 48.052 | 77 | 40 | 0 | 88 | 164 | 106 | 182 | 8.04e-18 | 86.3 |
| MS.gene066510.t1 | AT5G07240 | 66.667 | 63 | 20 | 1 | 90 | 151 | 104 | 166 | 2.75e-17 | 84.0 |
| MS.gene066510.t1 | AT5G07240 | 66.667 | 63 | 20 | 1 | 90 | 151 | 150 | 212 | 3.11e-17 | 84.0 |
| MS.gene066510.t1 | AT3G51380 | 57.812 | 64 | 27 | 0 | 89 | 152 | 35 | 98 | 9.21e-16 | 73.2 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.28e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.28e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.28e-15 | 79.7 |
| MS.gene066510.t1 | AT1G74690 | 39.316 | 117 | 66 | 1 | 62 | 178 | 84 | 195 | 1.32e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.32e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.32e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.32e-15 | 79.7 |
| MS.gene066510.t1 | AT1G14380 | 35.928 | 167 | 90 | 5 | 1 | 157 | 1 | 160 | 1.33e-15 | 79.3 |
| MS.gene066510.t1 | AT4G29150 | 61.538 | 65 | 25 | 0 | 89 | 153 | 129 | 193 | 1.36e-15 | 78.6 |
| MS.gene066510.t1 | AT5G03960 | 37.956 | 137 | 74 | 2 | 93 | 222 | 109 | 241 | 6.96e-15 | 76.6 |
| MS.gene066510.t1 | AT5G03960 | 37.956 | 137 | 74 | 2 | 93 | 222 | 110 | 242 | 7.38e-15 | 76.6 |
| MS.gene066510.t1 | AT5G03960 | 37.956 | 137 | 74 | 2 | 93 | 222 | 110 | 242 | 7.38e-15 | 76.6 |
| MS.gene066510.t1 | AT1G01110 | 28.125 | 288 | 162 | 9 | 134 | 385 | 1 | 279 | 1.10e-14 | 75.9 |
| MS.gene066510.t1 | AT5G62070 | 61.667 | 60 | 23 | 0 | 86 | 145 | 112 | 171 | 2.30e-14 | 75.1 |
| MS.gene066510.t1 | AT3G49380 | 38.235 | 136 | 67 | 4 | 19 | 147 | 41 | 166 | 3.18e-14 | 74.3 |
| MS.gene066510.t1 | AT1G19870 | 35.938 | 128 | 60 | 3 | 47 | 152 | 149 | 276 | 4.86e-13 | 71.6 |
| MS.gene066510.t1 | AT1G19870 | 53.226 | 62 | 29 | 0 | 91 | 152 | 32 | 93 | 2.19e-12 | 69.7 |
| MS.gene066510.t1 | AT2G02790 | 41.892 | 74 | 43 | 0 | 84 | 157 | 100 | 173 | 9.41e-11 | 64.3 |
| MS.gene066510.t1 | AT2G02790 | 41.892 | 74 | 43 | 0 | 84 | 157 | 100 | 173 | 9.41e-11 | 64.3 |
Find 115 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGGTGCTTCTGGAAAA+TGG | 0.162318 | 3.3:-86000079 | MS.gene066510:CDS |
| AACGAGTAGCTTGTCCAATA+TGG | 0.247199 | 3.3:+85998301 | None:intergenic |
| AAGGGTTCTGCAAATTTCTT+TGG | 0.258449 | 3.3:+85998405 | None:intergenic |
| TGAGTCAGGTTCATGTAATT+TGG | 0.262145 | 3.3:+85998150 | None:intergenic |
| GCAACACTCATGGGTGCTTC+TGG | 0.264318 | 3.3:-86000086 | None:intergenic |
| AACCACTTTCCGCGCCTTCT+TGG | 0.292272 | 3.3:-85999694 | MS.gene066510:intron |
| CTTTGTTCATCTCGTGATTC+CGG | 0.304293 | 3.3:+85998538 | None:intergenic |
| TTACCGAGCTCTTGTCCAAT+TGG | 0.361383 | 3.3:+85997947 | None:intergenic |
| GCTAAGCCTCCTCCCCATAT+TGG | 0.363494 | 3.3:-85998315 | MS.gene066510:CDS |
| AACCAAGGCAAAGCTAAAAT+CGG | 0.368576 | 3.3:-85998124 | MS.gene066510:CDS |
| TTGCCTTGGTTGATTGAGTC+AGG | 0.373865 | 3.3:+85998136 | None:intergenic |
| ACATGTTGTTCATCTTTGTC+TGG | 0.374417 | 3.3:+86000029 | None:intergenic |
| AATTTCTTTGGAGGTGGCGG+TGG | 0.375706 | 3.3:+85998417 | None:intergenic |
| TGAGGATTCAAGCACTTGTC+AGG | 0.392686 | 3.3:-85999297 | MS.gene066510:CDS |
| CACGAGATGAACAAAGCTAA+TGG | 0.399444 | 3.3:-85998531 | MS.gene066510:CDS |
| AGAAGGCGCGGAAAGTGGTT+TGG | 0.400404 | 3.3:+85999697 | None:intergenic |
| ACGAGATGAACAAAGCTAAT+GGG | 0.406154 | 3.3:-85998530 | MS.gene066510:CDS |
| CAAGTCCAAGTTCCGAGTTT+CGG | 0.408556 | 3.3:-85998272 | MS.gene066510:CDS |
| ACCCTTCAGAAGCTGCTTTG+TGG | 0.408756 | 3.3:+85999829 | None:intergenic |
| GCCTTGGGAGACTAGATTGA+TGG | 0.409779 | 3.3:-85998472 | MS.gene066510:CDS |
| TACCGAGCTCTTGTCCAATT+GGG | 0.410350 | 3.3:+85997948 | None:intergenic |
| GATGGAGTTGGTTGGAAAGA+TGG | 0.411885 | 3.3:-85998506 | MS.gene066510:CDS |
| TCGTACCGAAACTCGGAACT+TGG | 0.431873 | 3.3:+85998267 | None:intergenic |
| CATGGGTGCTTCTGGAAAAT+GGG | 0.436014 | 3.3:-86000078 | MS.gene066510:CDS |
| AAATGGGTCAAAGCATTAAT+CGG | 0.439295 | 3.3:-86000062 | MS.gene066510:CDS |
| AAGGGCTTTGAGGGCATTGA+AGG | 0.446119 | 3.3:-85999326 | MS.gene066510:CDS |
| ATTTCTTTGGAGGTGGCGGT+GGG | 0.446397 | 3.3:+85998418 | None:intergenic |
| ACTTCACCTACCAACCCAAT+TGG | 0.446591 | 3.3:-85997962 | MS.gene066510:CDS |
| ACGAGTAGCTTGTCCAATAT+GGG | 0.450987 | 3.3:+85998302 | None:intergenic |
| TTAGACTTGTTAGGCAAGAA+TGG | 0.452196 | 3.3:-85999734 | MS.gene066510:CDS |
| AGCTCAAAGGCAACAGTCAA+TGG | 0.457003 | 3.3:-85998079 | MS.gene066510:CDS |
| TAGACTTGTTAGGCAAGAAT+GGG | 0.462512 | 3.3:-85999733 | MS.gene066510:CDS |
| GGTTCTGCAAATTTCTTTGG+AGG | 0.465140 | 3.3:+85998408 | None:intergenic |
| TGCAGGCAAGAAGGGCTTTG+AGG | 0.465225 | 3.3:-85999336 | MS.gene066510:intron |
| TTTGAGATTTCCAGCAATGC+AGG | 0.466329 | 3.3:-85998608 | MS.gene066510:intron |
| GATGGATGGCAGCCAAGCCT+TGG | 0.468070 | 3.3:-85998488 | MS.gene066510:CDS |
| CATCAGGAGATAACAGTTCA+TGG | 0.470128 | 3.3:-85999872 | MS.gene066510:CDS |
| CTAACAAGTCTAAAATCCTT+AGG | 0.472089 | 3.3:+85999744 | None:intergenic |
| GCAGGCAAGAAGGGCTTTGA+GGG | 0.472599 | 3.3:-85999335 | MS.gene066510:intron |
| TCTGCAAATTTCTTTGGAGG+TGG | 0.475452 | 3.3:+85998411 | None:intergenic |
| TTCAAATTCGAGCTTACAAA+GGG | 0.481570 | 3.3:+85998387 | None:intergenic |
| TCGTCGTGTGAGGATGTCTA+TGG | 0.489827 | 3.3:-85999194 | MS.gene066510:CDS |
| ACATCCACAACTCCAATGTC+AGG | 0.493112 | 3.3:-85998216 | MS.gene066510:CDS |
| CTTCAGAAGCTGCTTTGTGG+TGG | 0.503461 | 3.3:+85999832 | None:intergenic |
| CGCGAATTAGTGCTTGAGGT+TGG | 0.505381 | 3.3:+85998585 | None:intergenic |
| TCTTGTCCAATTGGGTTGGT+AGG | 0.505736 | 3.3:+85997956 | None:intergenic |
| TGAGTTTCAATTTATGAAGA+GGG | 0.508341 | 3.3:-85998055 | MS.gene066510:CDS |
| GCAAATTTCTTTGGAGGTGG+CGG | 0.508534 | 3.3:+85998414 | None:intergenic |
| TGTTTGAAGGTGAAGGAGGG+TGG | 0.510225 | 3.3:-85999927 | MS.gene066510:intron |
| ATGGATGGCAGCCAAGCCTT+GGG | 0.511965 | 3.3:-85998487 | MS.gene066510:CDS |
| AGGTTATGGAGAAGTTCATC+AGG | 0.515436 | 3.3:-85999888 | MS.gene066510:CDS |
| AAAATTCAAATGAGGCAAGA+AGG | 0.523644 | 3.3:-85998975 | MS.gene066510:CDS |
| TGCATACTCACTTGCTCAGA+AGG | 0.524622 | 3.3:-85998928 | MS.gene066510:intron |
| ACCAAGGCAAAGCTAAAATC+GGG | 0.526058 | 3.3:-85998123 | MS.gene066510:CDS |
| TCACAAGTGTTCCCTGACAT+TGG | 0.528516 | 3.3:+85998204 | None:intergenic |
| GGTTATGAGTGCAGGCAAGA+AGG | 0.532390 | 3.3:-85999345 | MS.gene066510:intron |
| GTTATGAGTGCAGGCAAGAA+GGG | 0.535330 | 3.3:-85999344 | MS.gene066510:intron |
| ACTCTCATCGTACCGAAACT+CGG | 0.535615 | 3.3:+85998260 | None:intergenic |
| TTCATTAAGCATATTCTGCA+CGG | 0.537002 | 3.3:+85999162 | None:intergenic |
| CGTTGTTAGAGCTCAGCCTA+AGG | 0.538437 | 3.3:-85999760 | MS.gene066510:CDS |
| AATTGGGTTGGTAGGTGAAG+TGG | 0.542624 | 3.3:+85997964 | None:intergenic |
| TACCAAGAAGGCGCGGAAAG+TGG | 0.545045 | 3.3:+85999692 | None:intergenic |
| CAATCTAGTCTCCCAAGGCT+TGG | 0.546403 | 3.3:+85998476 | None:intergenic |
| CACCACAAAGCAGCTTCTGA+AGG | 0.550489 | 3.3:-85999831 | MS.gene066510:CDS |
| TTTGAGGGCATTGAAGGCAG+TGG | 0.558218 | 3.3:-85999320 | MS.gene066510:CDS |
| AGGAGATAACAGTTCATGGA+AGG | 0.563394 | 3.3:-85999868 | MS.gene066510:CDS |
| AGCAAGCTGCAGTGACATTG+AGG | 0.563850 | 3.3:-85999258 | MS.gene066510:CDS |
| TTATGTTTGAAGGTGAAGGA+GGG | 0.568504 | 3.3:-85999930 | MS.gene066510:intron |
| ATGAGTTTCAATTTATGAAG+AGG | 0.569955 | 3.3:-85998056 | MS.gene066510:CDS |
| CGAGATGAACAAAGCTAATG+GGG | 0.570107 | 3.3:-85998529 | MS.gene066510:CDS |
| GAGCTCTTGTCCAATTGGGT+TGG | 0.572250 | 3.3:+85997952 | None:intergenic |
| GAGTAAGAGCTCGTCGTGTG+AGG | 0.575741 | 3.3:-85999204 | MS.gene066510:CDS |
| TTTCAAATTCGAGCTTACAA+AGG | 0.575937 | 3.3:+85998386 | None:intergenic |
| GTTCCCTGACATTGGAGTTG+TGG | 0.575976 | 3.3:+85998212 | None:intergenic |
| CTCGAATTTGAAACCATGCT+CGG | 0.576259 | 3.3:-85998376 | MS.gene066510:CDS |
| GCTTGTCCAATATGGGGAGG+AGG | 0.576470 | 3.3:+85998309 | None:intergenic |
| AACCCAATTGGACAAGAGCT+CGG | 0.579610 | 3.3:-85997950 | MS.gene066510:CDS |
| AGGATAGTTGTAACAGCACT+AGG | 0.582943 | 3.3:-85998173 | MS.gene066510:CDS |
| TCGTGTGAGGATGTCTATGG+AGG | 0.584361 | 3.3:-85999191 | MS.gene066510:CDS |
| CATCTCGTGATTCCGGAGAG+TGG | 0.591885 | 3.3:+85998545 | None:intergenic |
| GTGTGATAGCATAGGAACAT+TGG | 0.592155 | 3.3:-85999012 | MS.gene066510:CDS |
| AATATGGGGAGGAGGCTTAG+CGG | 0.592945 | 3.3:+85998317 | None:intergenic |
| GAGGATTCAAGCACTTGTCA+GGG | 0.594722 | 3.3:-85999296 | MS.gene066510:CDS |
| TTTCTTTGGAGGTGGCGGTG+GGG | 0.595890 | 3.3:+85998419 | None:intergenic |
| TTTATGTTTGAAGGTGAAGG+AGG | 0.601205 | 3.3:-85999931 | MS.gene066510:intron |
| ACCACAAAGCAGCTTCTGAA+GGG | 0.605684 | 3.3:-85999830 | MS.gene066510:CDS |
| AGGAGCTTTCAAAAGAGAGA+GGG | 0.607085 | 3.3:-85998955 | MS.gene066510:CDS |
| GGAGATAACAGTTCATGGAA+GGG | 0.611321 | 3.3:-85999867 | MS.gene066510:CDS |
| GTGTAAGCTTCTGCAGCAGT+TGG | 0.611752 | 3.3:+85999798 | None:intergenic |
| AGTGCTGTTACAACTATCCT+CGG | 0.615531 | 3.3:+85998176 | None:intergenic |
| GAAGGGTGGTGTGATAGCAT+AGG | 0.616172 | 3.3:-85999020 | MS.gene066510:CDS |
| AGAAGCTTACACTGCTGCAG+TGG | 0.619115 | 3.3:-85999787 | MS.gene066510:CDS |
| TCCATCAATCTAGTCTCCCA+AGG | 0.620091 | 3.3:+85998471 | None:intergenic |
| AAGGAGCTTTCAAAAGAGAG+AGG | 0.623020 | 3.3:-85998956 | MS.gene066510:CDS |
| GGGCATTGAAGGCAGTGGTG+AGG | 0.626128 | 3.3:-85999315 | MS.gene066510:CDS |
| ATTCCGGAGAGTGGAAAATG+AGG | 0.631071 | 3.3:+85998554 | None:intergenic |
| CGAGTAGCTTGTCCAATATG+GGG | 0.633366 | 3.3:+85998303 | None:intergenic |
| CGTGTGAGGATGTCTATGGA+GGG | 0.633588 | 3.3:-85999190 | MS.gene066510:CDS |
| AGTGACATTGAGGTGCATGC+AGG | 0.633703 | 3.3:-85999248 | MS.gene066510:CDS |
| GAGTTGGTTGGAAAGATGGA+TGG | 0.634715 | 3.3:-85998502 | MS.gene066510:CDS |
| TGTCAGGGAACACTTGTGAA+AGG | 0.634990 | 3.3:-85998200 | MS.gene066510:CDS |
| TGTTCGCGAATTAGTGCTTG+AGG | 0.643363 | 3.3:+85998581 | None:intergenic |
| AAATGTATAACAGAGCTCAA+AGG | 0.643845 | 3.3:-85998092 | MS.gene066510:CDS |
| TTGTGAATCTGCAGGAAGGG+TGG | 0.652606 | 3.3:-85999034 | MS.gene066510:intron |
| CATCCACAACTCCAATGTCA+GGG | 0.657914 | 3.3:-85998215 | MS.gene066510:CDS |
| ACAAGAGCTCGGTAAGACCA+TGG | 0.676025 | 3.3:-85997939 | MS.gene066510:CDS |
| CTTAGGCTGAGCTCTAACAA+CGG | 0.677421 | 3.3:+85999761 | None:intergenic |
| AATTGAATACCAAGAAGGCG+CGG | 0.680101 | 3.3:+85999685 | None:intergenic |
| AGGATTCAAGCACTTGTCAG+GGG | 0.684889 | 3.3:-85999295 | MS.gene066510:CDS |
| TTGTCAGGGGTAGACAAGTG+AGG | 0.688660 | 3.3:-85999282 | MS.gene066510:CDS |
| GTAGCTTGTCCAATATGGGG+AGG | 0.689343 | 3.3:+85998306 | None:intergenic |
| GAACCTGACTCAATCAACCA+AGG | 0.696026 | 3.3:-85998139 | MS.gene066510:CDS |
| AAAAGAACAATGTCACAACA+AGG | 0.709510 | 3.3:-85998344 | MS.gene066510:CDS |
| GAGATGAACAAAGCTAATGG+GGG | 0.721370 | 3.3:-85998528 | MS.gene066510:CDS |
| GAACACTTGTGAAAGGACCG+AGG | 0.744801 | 3.3:-85998193 | MS.gene066510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTAAAAAAACATTAAAT+GGG | + | chr3.3:85998484-85998503 | None:intergenic | 10.0% |
| !! | ATTAAAAAATAACAAATTTG+AGG | + | chr3.3:85999169-85999188 | None:intergenic | 10.0% |
| !! | TAAACTAAAAAAACATTAAA+TGG | + | chr3.3:85998485-85998504 | None:intergenic | 10.0% |
| !! | TTAAAAAATAACAAATTTGA+GGG | + | chr3.3:85999168-85999187 | None:intergenic | 10.0% |
| !! | TTAAATCAAAAATTCAAATG+AGG | - | chr3.3:85999030-85999049 | MS.gene066510:intron | 15.0% |
| !!! | AAAAAAACAAACTTTTTTTG+TGG | + | chr3.3:85998037-85998056 | None:intergenic | 15.0% |
| !!! | AAAAAACAAACTTTTTTTGT+GGG | + | chr3.3:85998036-85998055 | None:intergenic | 15.0% |
| !!! | AATGTTTTTTTAGTTTAGAT+TGG | - | chr3.3:85998488-85998507 | MS.gene066510:CDS | 15.0% |
| !! | AAAATAAATAGTCATCAAAG+AGG | + | chr3.3:85998405-85998424 | None:intergenic | 20.0% |
| !! | ACTAAATTGAACAATTTGAA+AGG | + | chr3.3:85999201-85999220 | None:intergenic | 20.0% |
| !!! | ATAATTTGAAATTTCGTTAG+AGG | - | chr3.3:85999254-85999273 | MS.gene066510:CDS | 20.0% |
| !!! | TAGTTTAGATTGGAAAATTT+TGG | - | chr3.3:85998498-85998517 | MS.gene066510:CDS | 20.0% |
| ! | ATGAGTTTCAATTTATGAAG+AGG | - | chr3.3:85999957-85999976 | MS.gene066510:intron | 25.0% |
| ! | GAAAAAATTGAATACCAAGA+AGG | + | chr3.3:85998336-85998355 | None:intergenic | 25.0% |
| ! | GAAAGGAAAGAAAAAGAAAA+AGG | + | chr3.3:85999364-85999383 | None:intergenic | 25.0% |
| ! | GTTTATTCATTCAAACATAG+TGG | - | chr3.3:85999319-85999338 | MS.gene066510:CDS | 25.0% |
| ! | TAGTGTATTGAACTATTTGT+TGG | - | chr3.3:85998617-85998636 | MS.gene066510:intron | 25.0% |
| ! | TATTAGTTCCTAAAGTTGTA+GGG | + | chr3.3:85999295-85999314 | None:intergenic | 25.0% |
| ! | TGAGTTTCAATTTATGAAGA+GGG | - | chr3.3:85999958-85999977 | MS.gene066510:intron | 25.0% |
| ! | TTATTAGTTCCTAAAGTTGT+AGG | + | chr3.3:85999296-85999315 | None:intergenic | 25.0% |
| !! | GTCTATGAATTTTCAAATCA+TGG | - | chr3.3:85999231-85999250 | MS.gene066510:CDS | 25.0% |
| !! | TTGGACATTCATCTATTTTA+GGG | - | chr3.3:85998517-85998536 | MS.gene066510:CDS | 25.0% |
| !! | TTTGGACATTCATCTATTTT+AGG | - | chr3.3:85998516-85998535 | MS.gene066510:CDS | 25.0% |
| !! | TTTGTTTGGTTTATGTTTGA+AGG | - | chr3.3:85998073-85998092 | MS.gene066510:CDS | 25.0% |
| !!! | ATTTTATTTTGTGAATCTGC+AGG | - | chr3.3:85998971-85998990 | MS.gene066510:CDS | 25.0% |
| AAAAGAACAATGTCACAACA+AGG | - | chr3.3:85999669-85999688 | MS.gene066510:intron | 30.0% | |
| AAAATTCAAATGAGGCAAGA+AGG | - | chr3.3:85999038-85999057 | MS.gene066510:intron | 30.0% | |
| AAATGTATAACAGAGCTCAA+AGG | - | chr3.3:85999921-85999940 | MS.gene066510:CDS | 30.0% | |
| AAGCATCTTTCTTTGTAGAA+AGG | + | chr3.3:85999381-85999400 | None:intergenic | 30.0% | |
| AGAGTAAAAAATGGAGGTTA+TGG | - | chr3.3:85998111-85998130 | MS.gene066510:CDS | 30.0% | |
| AGGAAAGAAAAAGAAAAAGG+TGG | + | chr3.3:85999361-85999380 | None:intergenic | 30.0% | |
| TGTGTTTGTAATGAATGTGA+GGG | - | chr3.3:85998647-85998666 | MS.gene066510:intron | 30.0% | |
| TTCAAATTCGAGCTTACAAA+GGG | + | chr3.3:85999629-85999648 | None:intergenic | 30.0% | |
| TTCATTAAGCATATTCTGCA+CGG | + | chr3.3:85998854-85998873 | None:intergenic | 30.0% | |
| TTTCAAATTCGAGCTTACAA+AGG | + | chr3.3:85999630-85999649 | None:intergenic | 30.0% | |
| ! | AAATGGGTCAAAGCATTAAT+CGG | - | chr3.3:85997951-85997970 | MS.gene066510:CDS | 30.0% |
| ! | ATCATTCACTCAACTTTTCT+AGG | - | chr3.3:86000026-86000045 | MS.gene066510:intron | 30.0% |
| ! | CTAACAAGTCTAAAATCCTT+AGG | + | chr3.3:85998272-85998291 | None:intergenic | 30.0% |
| ! | GTATTGAACTATTTGTTGGA+AGG | - | chr3.3:85998621-85998640 | MS.gene066510:intron | 30.0% |
| !! | AAAACAAAAGCTTGAGTTGA+AGG | + | chr3.3:85998361-85998380 | None:intergenic | 30.0% |
| !! | CTAAGGATTTTAGACTTGTT+AGG | - | chr3.3:85998270-85998289 | MS.gene066510:CDS | 30.0% |
| !! | TTGTTGTTGTTGACTTTGTT+TGG | - | chr3.3:85998059-85998078 | MS.gene066510:CDS | 30.0% |
| AACCAAGGCAAAGCTAAAAT+CGG | - | chr3.3:85999889-85999908 | MS.gene066510:CDS | 35.0% | |
| AAGGGTTCTGCAAATTTCTT+TGG | + | chr3.3:85999611-85999630 | None:intergenic | 35.0% | |
| ACATGTTGTTCATCTTTGTC+TGG | + | chr3.3:85997987-85998006 | None:intergenic | 35.0% | |
| ACGAGATGAACAAAGCTAAT+GGG | - | chr3.3:85999483-85999502 | MS.gene066510:intron | 35.0% | |
| AGGGTGGTAAGAGTAAAAAA+TGG | - | chr3.3:85998102-85998121 | MS.gene066510:CDS | 35.0% | |
| CTGTGTTTGTAATGAATGTG+AGG | - | chr3.3:85998646-85998665 | MS.gene066510:intron | 35.0% | |
| GTGGTAAGAGTAAAAAATGG+AGG | - | chr3.3:85998105-85998124 | MS.gene066510:CDS | 35.0% | |
| TGAGTCAGGTTCATGTAATT+TGG | + | chr3.3:85999866-85999885 | None:intergenic | 35.0% | |
| TGGTTTATGTTTGAAGGTGA+AGG | - | chr3.3:85998079-85998098 | MS.gene066510:CDS | 35.0% | |
| TTATGTTTGAAGGTGAAGGA+GGG | - | chr3.3:85998083-85998102 | MS.gene066510:CDS | 35.0% | |
| TTTATGTTTGAAGGTGAAGG+AGG | - | chr3.3:85998082-85998101 | MS.gene066510:CDS | 35.0% | |
| ! | ATTTTGTGAATCTGCAGGAA+GGG | - | chr3.3:85998976-85998995 | MS.gene066510:CDS | 35.0% |
| ! | CAGCAAACTTGAACTTTTGA+AGG | - | chr3.3:85998879-85998898 | MS.gene066510:intron | 35.0% |
| ! | TATTTTGTGAATCTGCAGGA+AGG | - | chr3.3:85998975-85998994 | MS.gene066510:CDS | 35.0% |
| ! | TTAAGTTGCCCTACAACTTT+AGG | - | chr3.3:85999284-85999303 | MS.gene066510:CDS | 35.0% |
| !! | TAGACTTGTTAGGCAAGAAT+GGG | - | chr3.3:85998280-85998299 | MS.gene066510:CDS | 35.0% |
| !! | TTAGACTTGTTAGGCAAGAA+TGG | - | chr3.3:85998279-85998298 | MS.gene066510:CDS | 35.0% |
| AAGGAGCTTTCAAAAGAGAG+AGG | - | chr3.3:85999057-85999076 | MS.gene066510:intron | 40.0% | |
| AATTGAATACCAAGAAGGCG+CGG | + | chr3.3:85998331-85998350 | None:intergenic | 40.0% | |
| ACCAAGGCAAAGCTAAAATC+GGG | - | chr3.3:85999890-85999909 | MS.gene066510:CDS | 40.0% | |
| AGGAGATAACAGTTCATGGA+AGG | - | chr3.3:85998145-85998164 | MS.gene066510:CDS | 40.0% | |
| AGGAGCTTTCAAAAGAGAGA+GGG | - | chr3.3:85999058-85999077 | MS.gene066510:intron | 40.0% | |
| AGGATAGTTGTAACAGCACT+AGG | - | chr3.3:85999840-85999859 | MS.gene066510:CDS | 40.0% | |
| AGGTTATGGAGAAGTTCATC+AGG | - | chr3.3:85998125-85998144 | MS.gene066510:CDS | 40.0% | |
| CACGAGATGAACAAAGCTAA+TGG | - | chr3.3:85999482-85999501 | MS.gene066510:intron | 40.0% | |
| CATCAGGAGATAACAGTTCA+TGG | - | chr3.3:85998141-85998160 | MS.gene066510:CDS | 40.0% | |
| CGAGATGAACAAAGCTAATG+GGG | - | chr3.3:85999484-85999503 | MS.gene066510:intron | 40.0% | |
| CTTTGTTCATCTCGTGATTC+CGG | + | chr3.3:85999478-85999497 | None:intergenic | 40.0% | |
| GAGATGAACAAAGCTAATGG+GGG | - | chr3.3:85999485-85999504 | MS.gene066510:intron | 40.0% | |
| GGAGATAACAGTTCATGGAA+GGG | - | chr3.3:85998146-85998165 | MS.gene066510:CDS | 40.0% | |
| GGTTCTGCAAATTTCTTTGG+AGG | + | chr3.3:85999608-85999627 | None:intergenic | 40.0% | |
| GTGTGATAGCATAGGAACAT+TGG | - | chr3.3:85999001-85999020 | MS.gene066510:CDS | 40.0% | |
| ! | AACGAGTAGCTTGTCCAATA+TGG | + | chr3.3:85999715-85999734 | None:intergenic | 40.0% |
| ! | ACGAGTAGCTTGTCCAATAT+GGG | + | chr3.3:85999714-85999733 | None:intergenic | 40.0% |
| ! | AGTGCTGTTACAACTATCCT+CGG | + | chr3.3:85999840-85999859 | None:intergenic | 40.0% |
| ! | CTCGAATTTGAAACCATGCT+CGG | - | chr3.3:85999637-85999656 | MS.gene066510:intron | 40.0% |
| ! | TCTCTTTTCAGTCCTGAGTA+AGG | - | chr3.3:85999128-85999147 | MS.gene066510:CDS | 40.0% |
| ! | TCTGCAAATTTCTTTGGAGG+TGG | + | chr3.3:85999605-85999624 | None:intergenic | 40.0% |
| ! | TTTGAGATTTCCAGCAATGC+AGG | - | chr3.3:85999405-85999424 | MS.gene066510:intron | 40.0% |
| !! | TGAACTTTTGAAGGAAGCAG+AGG | - | chr3.3:85998888-85998907 | MS.gene066510:intron | 40.0% |
| !!! | TGGGGTTTTTTCTAAGCTCT+CGG | + | chr3.3:85999579-85999598 | None:intergenic | 40.0% |
| !!! | TTTTTGACTTTGACCGAGCA+TGG | + | chr3.3:85999653-85999672 | None:intergenic | 40.0% |
| AACCCAATTGGACAAGAGCT+CGG | - | chr3.3:86000063-86000082 | MS.gene066510:CDS | 45.0% | |
| AATGTGAGGGTTATGAGTGC+AGG | - | chr3.3:85998660-85998679 | MS.gene066510:intron | 45.0% | |
| ACATCCACAACTCCAATGTC+AGG | - | chr3.3:85999797-85999816 | MS.gene066510:CDS | 45.0% | |
| ACCACAAAGCAGCTTCTGAA+GGG | - | chr3.3:85998183-85998202 | MS.gene066510:CDS | 45.0% | |
| ACTCTCATCGTACCGAAACT+CGG | + | chr3.3:85999756-85999775 | None:intergenic | 45.0% | |
| ACTTCACCTACCAACCCAAT+TGG | - | chr3.3:86000051-86000070 | MS.gene066510:CDS | 45.0% | |
| AGCTCAAAGGCAACAGTCAA+TGG | - | chr3.3:85999934-85999953 | MS.gene066510:intron | 45.0% | |
| AGGATTCAAGCACTTGTCAG+GGG | - | chr3.3:85998718-85998737 | MS.gene066510:intron | 45.0% | |
| ATTCCGGAGAGTGGAAAATG+AGG | + | chr3.3:85999462-85999481 | None:intergenic | 45.0% | |
| CAAGTCCAAGTTCCGAGTTT+CGG | - | chr3.3:85999741-85999760 | MS.gene066510:CDS | 45.0% | |
| CATCCACAACTCCAATGTCA+GGG | - | chr3.3:85999798-85999817 | MS.gene066510:CDS | 45.0% | |
| GAACCTGACTCAATCAACCA+AGG | - | chr3.3:85999874-85999893 | MS.gene066510:CDS | 45.0% | |
| GAGGATTCAAGCACTTGTCA+GGG | - | chr3.3:85998717-85998736 | MS.gene066510:intron | 45.0% | |
| GTTATGAGTGCAGGCAAGAA+GGG | - | chr3.3:85998669-85998688 | MS.gene066510:intron | 45.0% | |
| TAATTGACGACGCCTTACTC+AGG | + | chr3.3:85999143-85999162 | None:intergenic | 45.0% | |
| TACCGAGCTCTTGTCCAATT+GGG | + | chr3.3:86000068-86000087 | None:intergenic | 45.0% | |
| TCACAAGTGTTCCCTGACAT+TGG | + | chr3.3:85999812-85999831 | None:intergenic | 45.0% | |
| TCCATCAATCTAGTCTCCCA+AGG | + | chr3.3:85999545-85999564 | None:intergenic | 45.0% | |
| TGAACAAAGCTAATGGGGGA+TGG | - | chr3.3:85999489-85999508 | MS.gene066510:intron | 45.0% | |
| TGAGGATTCAAGCACTTGTC+AGG | - | chr3.3:85998716-85998735 | MS.gene066510:intron | 45.0% | |
| TGCATACTCACTTGCTCAGA+AGG | - | chr3.3:85999085-85999104 | MS.gene066510:intron | 45.0% | |
| TGTCAGGGAACACTTGTGAA+AGG | - | chr3.3:85999813-85999832 | MS.gene066510:CDS | 45.0% | |
| TGTTCGCGAATTAGTGCTTG+AGG | + | chr3.3:85999435-85999454 | None:intergenic | 45.0% | |
| TTACCGAGCTCTTGTCCAAT+TGG | + | chr3.3:86000069-86000088 | None:intergenic | 45.0% | |
| TTGCCTTGGTTGATTGAGTC+AGG | + | chr3.3:85999880-85999899 | None:intergenic | 45.0% | |
| ! | ACACCTCATTTTCCACTCTC+CGG | - | chr3.3:85999456-85999475 | MS.gene066510:intron | 45.0% |
| ! | AGGGCTGCAGTTTTCTCTAA+CGG | - | chr3.3:85999977-85999996 | MS.gene066510:intron | 45.0% |
| ! | CGAGTAGCTTGTCCAATATG+GGG | + | chr3.3:85999713-85999732 | None:intergenic | 45.0% |
| ! | CTTAGGCTGAGCTCTAACAA+CGG | + | chr3.3:85998255-85998274 | None:intergenic | 45.0% |
| ! | GAGTTGGTTGGAAAGATGGA+TGG | - | chr3.3:85999511-85999530 | MS.gene066510:intron | 45.0% |
| ! | GATGGAGTTGGTTGGAAAGA+TGG | - | chr3.3:85999507-85999526 | MS.gene066510:intron | 45.0% |
| ! | GCAAATTTCTTTGGAGGTGG+CGG | + | chr3.3:85999602-85999621 | None:intergenic | 45.0% |
| ! | TAGGTGTCGTGAATTGACAG+TGG | - | chr3.3:85998911-85998930 | MS.gene066510:intron | 45.0% |
| !! | AATTGGGTTGGTAGGTGAAG+TGG | + | chr3.3:86000052-86000071 | None:intergenic | 45.0% |
| !! | CTTTTGAAGGAAGCAGAGGT+AGG | - | chr3.3:85998892-85998911 | MS.gene066510:intron | 45.0% |
| !! | TCTTGTCCAATTGGGTTGGT+AGG | + | chr3.3:86000060-86000079 | None:intergenic | 45.0% |
| !!! | ACCCGATTTTAGCTTTGCCT+TGG | + | chr3.3:85999894-85999913 | None:intergenic | 45.0% |
| AAGCTAATGGGGGATGGAGT+TGG | - | chr3.3:85999495-85999514 | MS.gene066510:intron | 50.0% | |
| AATATGGGGAGGAGGCTTAG+CGG | + | chr3.3:85999699-85999718 | None:intergenic | 50.0% | |
| ACAAGAGCTCGGTAAGACCA+TGG | - | chr3.3:86000074-86000093 | MS.gene066510:CDS | 50.0% | |
| AGAAGCTTACACTGCTGCAG+TGG | - | chr3.3:85998226-85998245 | MS.gene066510:CDS | 50.0% | |
| AGCAAGCTGCAGTGACATTG+AGG | - | chr3.3:85998755-85998774 | MS.gene066510:intron | 50.0% | |
| AGTGACATTGAGGTGCATGC+AGG | - | chr3.3:85998765-85998784 | MS.gene066510:intron | 50.0% | |
| CAATCTAGTCTCCCAAGGCT+TGG | + | chr3.3:85999540-85999559 | None:intergenic | 50.0% | |
| CACCACAAAGCAGCTTCTGA+AGG | - | chr3.3:85998182-85998201 | MS.gene066510:CDS | 50.0% | |
| CGCGAATTAGTGCTTGAGGT+TGG | + | chr3.3:85999431-85999450 | None:intergenic | 50.0% | |
| CGTGTGAGGATGTCTATGGA+GGG | - | chr3.3:85998823-85998842 | MS.gene066510:intron | 50.0% | |
| CGTTGTTAGAGCTCAGCCTA+AGG | - | chr3.3:85998253-85998272 | MS.gene066510:CDS | 50.0% | |
| GAACACTTGTGAAAGGACCG+AGG | - | chr3.3:85999820-85999839 | MS.gene066510:CDS | 50.0% | |
| GAAGGGTGGTGTGATAGCAT+AGG | - | chr3.3:85998993-85999012 | MS.gene066510:CDS | 50.0% | |
| GAGCTCTTGTCCAATTGGGT+TGG | + | chr3.3:86000064-86000083 | None:intergenic | 50.0% | |
| GCCTTGGGAGACTAGATTGA+TGG | - | chr3.3:85999541-85999560 | MS.gene066510:intron | 50.0% | |
| GGTTATGAGTGCAGGCAAGA+AGG | - | chr3.3:85998668-85998687 | MS.gene066510:intron | 50.0% | |
| GTGTAAGCTTCTGCAGCAGT+TGG | + | chr3.3:85998218-85998237 | None:intergenic | 50.0% | |
| GTTCCCTGACATTGGAGTTG+TGG | + | chr3.3:85999804-85999823 | None:intergenic | 50.0% | |
| TCGTACCGAAACTCGGAACT+TGG | + | chr3.3:85999749-85999768 | None:intergenic | 50.0% | |
| TCGTCGTGTGAGGATGTCTA+TGG | - | chr3.3:85998819-85998838 | MS.gene066510:intron | 50.0% | |
| TCGTGTGAGGATGTCTATGG+AGG | - | chr3.3:85998822-85998841 | MS.gene066510:intron | 50.0% | |
| TGTTTGAAGGTGAAGGAGGG+TGG | - | chr3.3:85998086-85998105 | MS.gene066510:CDS | 50.0% | |
| TTGTCAGGGGTAGACAAGTG+AGG | - | chr3.3:85998731-85998750 | MS.gene066510:intron | 50.0% | |
| TTGTGAATCTGCAGGAAGGG+TGG | - | chr3.3:85998979-85998998 | MS.gene066510:CDS | 50.0% | |
| ! | AATTTCTTTGGAGGTGGCGG+TGG | + | chr3.3:85999599-85999618 | None:intergenic | 50.0% |
| ! | ACCCTTCAGAAGCTGCTTTG+TGG | + | chr3.3:85998187-85998206 | None:intergenic | 50.0% |
| ! | ATTTCTTTGGAGGTGGCGGT+GGG | + | chr3.3:85999598-85999617 | None:intergenic | 50.0% |
| ! | CTTCAGAAGCTGCTTTGTGG+TGG | + | chr3.3:85998184-85998203 | None:intergenic | 50.0% |
| ! | GTAGCTTGTCCAATATGGGG+AGG | + | chr3.3:85999710-85999729 | None:intergenic | 50.0% |
| ! | TAATGGGGGATGGAGTTGGT+TGG | - | chr3.3:85999499-85999518 | MS.gene066510:intron | 50.0% |
| !! | AAGGGCTTTGAGGGCATTGA+AGG | - | chr3.3:85998687-85998706 | MS.gene066510:intron | 50.0% |
| !! | TTTGAGGGCATTGAAGGCAG+TGG | - | chr3.3:85998693-85998712 | MS.gene066510:intron | 50.0% |
| AACCACTTTCCGCGCCTTCT+TGG | - | chr3.3:85998319-85998338 | MS.gene066510:CDS | 55.0% | |
| ATGGATGGCAGCCAAGCCTT+GGG | - | chr3.3:85999526-85999545 | MS.gene066510:intron | 55.0% | |
| CATCTCGTGATTCCGGAGAG+TGG | + | chr3.3:85999471-85999490 | None:intergenic | 55.0% | |
| GAGTAAGAGCTCGTCGTGTG+AGG | - | chr3.3:85998809-85998828 | MS.gene066510:intron | 55.0% | |
| GCTAAGCCTCCTCCCCATAT+TGG | - | chr3.3:85999698-85999717 | MS.gene066510:CDS | 55.0% | |
| GCTTGTCCAATATGGGGAGG+AGG | + | chr3.3:85999707-85999726 | None:intergenic | 55.0% | |
| TGCAGGCAAGAAGGGCTTTG+AGG | - | chr3.3:85998677-85998696 | MS.gene066510:intron | 55.0% | |
| ! | AGAAGGCGCGGAAAGTGGTT+TGG | + | chr3.3:85998319-85998338 | None:intergenic | 55.0% |
| ! | GCAGGCAAGAAGGGCTTTGA+GGG | - | chr3.3:85998678-85998697 | MS.gene066510:intron | 55.0% |
| ! | TACCAAGAAGGCGCGGAAAG+TGG | + | chr3.3:85998324-85998343 | None:intergenic | 55.0% |
| ! | TTTCTTTGGAGGTGGCGGTG+GGG | + | chr3.3:85999597-85999616 | None:intergenic | 55.0% |
| !! | TTGAGGTTGGCCTGCATTGC+TGG | + | chr3.3:85999418-85999437 | None:intergenic | 55.0% |
| GATGGATGGCAGCCAAGCCT+TGG | - | chr3.3:85999525-85999544 | MS.gene066510:intron | 60.0% | |
| !! | GGGCATTGAAGGCAGTGGTG+AGG | - | chr3.3:85998698-85998717 | MS.gene066510:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 85997936 | 86000099 | 85997936 | ID=MS.gene066510 |
| chr3.3 | mRNA | 85997936 | 86000099 | 85997936 | ID=MS.gene066510.t1;Parent=MS.gene066510 |
| chr3.3 | exon | 86000031 | 86000099 | 86000031 | ID=MS.gene066510.t1.exon1;Parent=MS.gene066510.t1 |
| chr3.3 | CDS | 86000031 | 86000099 | 86000031 | ID=cds.MS.gene066510.t1;Parent=MS.gene066510.t1 |
| chr3.3 | exon | 85999695 | 85999940 | 85999695 | ID=MS.gene066510.t1.exon2;Parent=MS.gene066510.t1 |
| chr3.3 | CDS | 85999695 | 85999940 | 85999695 | ID=cds.MS.gene066510.t1;Parent=MS.gene066510.t1 |
| chr3.3 | exon | 85999126 | 85999353 | 85999126 | ID=MS.gene066510.t1.exon3;Parent=MS.gene066510.t1 |
| chr3.3 | CDS | 85999126 | 85999353 | 85999126 | ID=cds.MS.gene066510.t1;Parent=MS.gene066510.t1 |
| chr3.3 | exon | 85998929 | 85999042 | 85998929 | ID=MS.gene066510.t1.exon4;Parent=MS.gene066510.t1 |
| chr3.3 | CDS | 85998929 | 85999042 | 85998929 | ID=cds.MS.gene066510.t1;Parent=MS.gene066510.t1 |
| chr3.3 | exon | 85997936 | 85998616 | 85997936 | ID=MS.gene066510.t1.exon5;Parent=MS.gene066510.t1 |
| chr3.3 | CDS | 85997936 | 85998616 | 85997936 | ID=cds.MS.gene066510.t1;Parent=MS.gene066510.t1 |
| Gene Sequence |
| Protein sequence |
