AlfalfaGEDB | MS.gene067270

M. sativa cultivar XinJiangDaYe / MS.gene067270

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067270.t1	XP_013445262.1	77.5	426	71	1	1	426	11	411	1.60E-67	266.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067270.t1	D9UC01	35.6	104	67	0	14	117	16	119	3.9e-14	80.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067270.t1	A0A072TR16	77.5	426	71	1	1	426	11	411	1.1e-67	266.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049698	MS.gene067270	0.806888	6.61E-50	-1.69E-46
MS.gene05017	MS.gene067270	0.804098	2.54E-49	-1.69E-46
MS.gene058351	MS.gene067270	0.807331	5.33E-50	-1.69E-46
MS.gene058909	MS.gene067270	0.855338	6.74E-62	-1.69E-46
MS.gene058912	MS.gene067270	0.853358	2.52E-61	-1.69E-46
MS.gene05894	MS.gene067270	0.812883	3.39E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 63 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTCAAAATGGTAAAG+AGG	0.553368	8.1:-59393766	MS.gene067270:CDS
AAAGGCTCAAAAGGGTGAAG+AGG	0.622355	8.1:-59393691	MS.gene067270:CDS
AAATGTTCCAGAGAAGGAAA+AGG	0.521289	8.1:-59393466	MS.gene067270:CDS
AACAAATGAAAAGGCTCAAA+AGG	0.366924	8.1:-59393700	MS.gene067270:CDS
AATAGATGAAAAGCCTCAAA+AGG	0.421979	8.1:-59393901	MS.gene067270:CDS
AATGACAATAACCCTCAAAA+GGG	0.540210	8.1:-59393975	MS.gene067270:CDS
AATTTAGAGGAAAAGATAGT+AGG	0.419722	8.1:-59393627	MS.gene067270:CDS
AATTTGCTGCTACTTCTTCT+CGG	0.423071	8.1:-59393392	MS.gene067270:CDS
ACAAATGAAAAGGCTCAAAA+GGG	0.550919	8.1:-59393699	MS.gene067270:CDS
ACATGAAGAAGGTAAGCTTC+AGG	0.423364	8.1:+59394680	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGAAAAGGCTCAAA+AGG	-	chr8.1:59394325-59394344	MS.gene067270:CDS	30.0%
AATAGATGAAAAGCCTCAAA+AGG	-	chr8.1:59394124-59394143	MS.gene067270:CDS	30.0%
AATGACAATAACCCTCAAAA+GGG	-	chr8.1:59394050-59394069	MS.gene067270:CDS	30.0%
ACAAATGAAAAGGCTCAAAA+GGG	-	chr8.1:59394326-59394345	MS.gene067270:CDS	30.0%
AGACATTTAGCTGAAAATGT+AGG	-	chr8.1:59394698-59394717	MS.gene067270:CDS	30.0%
ATAGATGAAAAGCCTCAAAA+GGG	-	chr8.1:59394125-59394144	MS.gene067270:CDS	30.0%
ATAGATGAAAAGCCTCAAAA+TGG	-	chr8.1:59394125-59394144	MS.gene067270:CDS	30.0%
GCCAAAAACAATAGAGAAAT+TGG	-	chr8.1:59394364-59394383	MS.gene067270:CDS	30.0%
GGTTACCAAAGAAAATTTAG+AGG	-	chr8.1:59394385-59394404	MS.gene067270:CDS	30.0%
TCAAAATGGTAAAGAGGATT+TGG	-	chr8.1:59394265-59394284	MS.gene067270:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	59393266	59394781	59393266	ID=MS.gene067270
chr8.1	mRNA	59393266	59394781	59393266	ID=MS.gene067270.t1;Parent=MS.gene067270
chr8.1	exon	59394669	59394781	59394669	ID=MS.gene067270.t1.exon1;Parent=MS.gene067270.t1
chr8.1	CDS	59394669	59394781	59394669	ID=cds.MS.gene067270.t1;Parent=MS.gene067270.t1
chr8.1	exon	59393266	59394434	59393266	ID=MS.gene067270.t1.exon2;Parent=MS.gene067270.t1
chr8.1	CDS	59393266	59394434	59393266	ID=cds.MS.gene067270.t1;Parent=MS.gene067270.t1

Gene Sequence

>MS.gene067270

AGCACCAACTTTCCGGTCGCAACTTTCAGTTCGTCGTGTGTACGAGACTTTGCAGCCTCTATCAGAGATGAAAGAAACTCCTGAAGCTTACCTTCTTCATGTTTATCTTCCTGGTATATGCCTTTAACTTGTTTACATGGTCGTTAATTCCGTAAGTACAATTCATATGATACGCACGCTAGAATATTTAATATTGCAGCGTGAGTTTGAATCGACAATTCCTCGCATCAACTGTGTCATTGTTGTATTATTTTCGAATTTATTTATTTTTTACTTAAAGTCAAAATTTGTGTGTATGGCCTGCTATATAATCAAACCAAAACTATATTTCTGTTTTGATTTTGTAGGTTTTACAAAGGATCAAATGAAGATTGAGTTGCTGGACATGTCACGAAAGTTGAGGGTTACAGGCGAACGACCGATTCCAGTTAACAAATGGAGAAAATTTGACCAAACATATCCTGTTCCAGAAAATAGTGTGGCAGAGAAACTTGAAGCCAAATTTGAACAAGGAACTCTCATTCTTAAAATGCAAAAGAAGCCAACTTCACAATCATCACAAGTAGCTCCTCAACAAGAAGTAGAAAAAAGTCCTTCAAATAATAAAGATTTAGATGAAGCAAAGGTTGAAAAAGCTCAAGAGACCAATATTCCACCACCACAAAAATTGGAAGAATCAACTAAAGACATGAAAAGTGATTCACCTCAAACTTCTCAAAGCATTGAAAAAAAGACACAAAATGATGATGACACACCATCTCAAATTCCTAAAGAAACAATTAGCAATGACAATAACCCTCAAAAGGGTCAACAAGAATTTGAGCCAAAACCAACATCCATAGACACAACCAAAAAGCAAATAGATGAAAAGCCTCAAAAGGGTCAAGAAGAATTTGAAACAAGACCAACATCAATAGATGAAAAGCCGCAAAATGGTCAAGTATTGGAGACAAAACCAACATCCATAGAGAGAACCAAAACACAAATAGATGAAAAGCCTCAAAATGGTAAAGAGGATTTGGAGTCAAAACCAACATCCACAGAGAGAACCAAAACACAAACAAATGAAAAGGCTCAAAAGGGTGAAGAGGAAGTAGAGCCAAAAACAATAGAGAAATTGGTTACCAAAGAAAATTTAGAGGAAAAGATAGTAGGAATGAGTGCTGAAGATGCTGAGAAAGAAAGGAACTCAAAGAAGGAGGAAGTTGAAGAGAAAAATGAGAAGCCTTATGAGTCAAGCAAGAATCAAAACTTCGAACAAAATGAAATTGAAAAAGCAGAAAATTTTGCTCCAAATGTTCCAGAGAAGGAAAAGGAAGCTTGCTGCAGAATTCCTCCCAATCAAGAAGGGAAGAATGGAATCAGAAAATTTGCTGCTACTTCTTCTCGGTTTGTGACAAGAATTGCAGAAGGGAAATTGAGTGGTGAAGAGAGACATTTAGCTGAAAATGTAGGTGTTGCAGTTCTAGTGATTGCTGCATTTGGAGCCTATGTGTCATATTGGTTTTCCTCTTAA

Protein sequence

>MS.gene067270.t1

STNFPVATFSSSCVRDFAASIRDERNSUSLPSSCLSSWFYKGSNEDUVAGHVTKVEGYRRTTDSSUQMEKIUPNISCSRKUCGRETUSQIUTRNSHSUNAKEANFTIITSSSSTRSRKKSFKUURFRUSKGUKSSRDQYSTTTKIGRINURHEKUFTSNFSKHUKKDTKUUUHTISNSURNNUQUQUPSKGSTRIUAKTNIHRHNQKANRUKASKGSRRIUNKTNINRUKAAKWSSIGDKTNIHRENQNTNRUKASKWURGFGVKTNIHRENQNTNKUKGSKGURGSRAKNNREIGYQRKFRGKDSRNECURCUERKELKEGGSUREKUEALUVKQESKLRTKUNUKSRKFCSKCSREGKGSLLQNSSQSRREEWNQKICCYFFSVCDKNCRREIEWURETFSUKCRCCSSSDCCIWSLCVILVFLL