AlfalfaGEDB | MS.gene067308

M. sativa cultivar XinJiangDaYe / MS.gene067308

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32 PF02183.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067308.t1	AFV30231.1	97.1	240	6	1	1	239	8	247	9.80E-75	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067308.t1	Q9M276	64.0	211	64	5	34	239	32	235	4.5e-28	126.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067308.t1	K4MNF8	97.1	240	6	1	1	239	8	247	7.0e-75	290.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene067308.t1	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049983	MS.gene067308	0.82009	8.24E-53	-1.69E-46
MS.gene050384	MS.gene067308	0.840467	8.54E-58	-1.69E-46
MS.gene050386	MS.gene067308	0.836327	9.98E-57	-1.69E-46
MS.gene051856	MS.gene067308	0.802493	5.46E-49	-1.69E-46
MS.gene052954	MS.gene067308	0.808741	2.67E-50	-1.69E-46
MS.gene053188	MS.gene067308	0.810736	9.94E-51	-1.69E-46
MS.gene053575	MS.gene067308	0.807229	5.60E-50	-1.69E-46
MS.gene053931	MS.gene067308	0.850163	2.03E-60	-1.69E-46
MS.gene05686	MS.gene067308	0.802856	4.60E-49	-1.69E-46
MS.gene057392	MS.gene067308	0.833303	5.76E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene060510	MS.gene067308	PPI
MS.gene067308	MS.gene84723	PPI
MS.gene067308	MS.gene84836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067308.t1	MTR_8g026960	96.266	241	7	2	1	239	1	241	2.33e-170	469
MS.gene067308.t1	MTR_3g092150	43.062	209	113	3	34	239	40	245	6.75e-48	158
MS.gene067308.t1	MTR_6g007647	53.125	96	45	0	34	129	35	130	4.23e-30	112
MS.gene067308.t1	MTR_6g007647	53.125	96	45	0	34	129	69	164	1.09e-29	112
MS.gene067308.t1	MTR_8g089895	48.148	108	56	0	34	141	56	163	4.12e-29	111
MS.gene067308.t1	MTR_6g011610	51.961	102	45	1	23	124	72	169	1.60e-26	103
MS.gene067308.t1	MTR_6g011610	53.846	91	42	0	34	124	98	188	1.65e-26	103
MS.gene067308.t1	MTR_8g468210	41.270	126	70	1	1	126	50	171	2.81e-26	103
MS.gene067308.t1	MTR_5g038280	41.176	136	73	2	3	137	64	193	4.42e-26	103
MS.gene067308.t1	MTR_3g086790	40.127	157	85	5	34	186	62	213	5.79e-26	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene067308.t1	AT2G46680	49.225	258	109	7	2	239	3	258	2.84e-65	203
MS.gene067308.t1	AT3G61890	55.238	210	82	5	35	239	33	235	3.21e-63	197
MS.gene067308.t1	AT2G46680	48.450	258	109	8	2	239	3	256	8.71e-62	194
MS.gene067308.t1	AT3G01470	44.531	128	70	1	34	160	70	197	4.96e-31	115
MS.gene067308.t1	AT2G22430	52.747	91	43	0	34	124	64	154	1.30e-28	110
MS.gene067308.t1	AT4G40060	50.549	91	45	0	34	124	61	151	2.65e-28	109
MS.gene067308.t1	AT5G65310	48.113	106	49	1	19	124	47	146	1.47e-27	107
MS.gene067308.t1	AT5G65310	48.113	106	49	1	19	124	65	164	2.20e-27	107
MS.gene067308.t1	AT1G69780	46.429	112	55	2	13	124	71	177	5.01e-26	103
MS.gene067308.t1	AT5G15150	40.000	145	77	3	11	154	96	231	8.30e-26	102

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Find 26 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTGAATCTATGAAGA+AGG	0.456244	8.2:-71059662	MS.gene067308:CDS
AACCATATAGCAACTTGTCT+TGG	0.480304	8.2:+71059769	None:intergenic
AAGACAAACATTACTAATAC+AGG	0.463639	8.2:-71059638	MS.gene067308:intron
AAGTTGTGATTATCAATGGT+GGG	0.604345	8.2:-71058952	MS.gene067308:CDS
AATCAAGTTGTGATTATCAA+TGG	0.520398	8.2:-71058956	MS.gene067308:CDS
AGATGATGACACAAGCATAA+AGG	0.461800	8.2:-71059096	MS.gene067308:CDS
AGCATAAAGGTTGAATACTT+TGG	0.411821	8.2:-71059083	MS.gene067308:CDS
AGCCAAGACAAGTTGCTATA+TGG	0.331941	8.2:-71059771	MS.gene067308:CDS
AGTTAAAGAAGCAAACAGCA+TGG	0.635070	8.2:-71059216	MS.gene067308:CDS
ATGGAAAGTGCAGCAGAAAA+TGG	0.377944	8.2:-71059197	MS.gene067308:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTGTGATTATCAATGGT+GGG	-	chr8.2:71059962-71059981	MS.gene067308:CDS	30.0%
AGCATAAAGGTTGAATACTT+TGG	-	chr8.2:71059831-71059850	MS.gene067308:CDS	30.0%
TGTTCTGATCTTTCTATTGA+AGG	+	chr8.2:71059780-71059799	None:intergenic	30.0%
TTCAAAACAAAAGAGCTAGA+TGG	-	chr8.2:71059167-71059186	MS.gene067308:CDS	30.0%
AAAAATCAAATGTGAGGCTG+AGG	-	chr8.2:71059743-71059762	MS.gene067308:CDS	35.0%
AACCATATAGCAACTTGTCT+TGG	+	chr8.2:71059148-71059167	None:intergenic	35.0%
AGATGATGACACAAGCATAA+AGG	-	chr8.2:71059818-71059837	MS.gene067308:CDS	35.0%
AGTTAAAGAAGCAAACAGCA+TGG	-	chr8.2:71059698-71059717	MS.gene067308:CDS	35.0%
CAAGTTGTGATTATCAATGG+TGG	-	chr8.2:71059961-71059980	MS.gene067308:CDS	35.0%
CTAATAACCATCGTGTTCAT+CGG	+	chr8.2:71059527-71059546	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	71058938	71059998	71058938	ID=MS.gene067308
chr8.2	mRNA	71058938	71059998	71058938	ID=MS.gene067308.t1;Parent=MS.gene067308
chr8.2	exon	71059639	71059998	71059639	ID=MS.gene067308.t1.exon1;Parent=MS.gene067308.t1
chr8.2	CDS	71059639	71059998	71059639	ID=cds.MS.gene067308.t1;Parent=MS.gene067308.t1
chr8.2	exon	71058938	71059297	71058938	ID=MS.gene067308.t1.exon2;Parent=MS.gene067308.t1
chr8.2	CDS	71058938	71059297	71058938	ID=cds.MS.gene067308.t1;Parent=MS.gene067308.t1

Gene Sequence

>MS.gene067308

ATGGAATATAGTCAATATAGTTATTCAGCAGAAGCAGGAGAAGAAACATACACAACTAGTAGCACATCTTCCATGAGAAAGAAGAAAAACAAGAATACAAAGAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACAAGACTTGAACCAAGAAAGAAGTTGCAATTAGCTAGAGAGCTTGGATTGCAGCCAAGACAAGTTGCTATATGGTTTCAAAACAAAAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAACAAACTTCAAAATAGTTACAATAATTTGGCTTCAAAGTTTGAATCTATGAAGAAGGAAAGACAAACATTACTAATACAGGTACTTAGTAGTTGCTAATTAGTAATAATTTTCATATAAATTTGTTTGCTTAGAATGGACTAACATATGTCATATATCCAATTCAATTTTAATTTTTAATCCATTTTGAAATGTTGACAAGATATCGTGCGAAATTATTATTAATAACGGTGGCACTAATAGTTATTTTACAATTGTCACATGTCCACTGAAGATACAAAGTCAATCTCTTACCACTGAGTTGATACCGATGAACACGATGGTTATTAGGGTCACTTAAATTACTAATATATTACATTTTGTATTAATTATTATCATATAGTTAATCATATAGTAATTTGACTGGTTTTCATGTTCAACAGTTGCAGAAGCTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGCAGCAGAAAATGGAGGAAAAATCAAATGTGAGGCTGAGGTGAAACCAAGTCCTTCAATAGAAAGATCAGAACATGTACTTGATGTTCTATCAGATGATGACACAAGCATAAAGGTTGAATACTTTGGTTTAGAAGATGAAACTGGTCTTATGAATTTTGCTGAACATGCTGATGGTTCTTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATTTGTTAGGTCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA

Protein sequence

>MS.gene067308.t1

MEYSQYSYSAEAGEETYTTSSTSSMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESAAENGGKIKCEAEVKPSPSIERSEHVLDVLSDDDTSIKVEYFGLEDETGLMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS