AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067401.t1 MTR_2g103795 95.636 275 12 0 1 275 1 275 1.11e-171 475
MS.gene067401.t1 MTR_2g103795 95.516 223 10 0 1 223 1 223 6.15e-131 370
MS.gene067401.t1 MTR_4g010250 51.362 257 106 4 1 255 1 240 1.26e-66 208
MS.gene067401.t1 MTR_4g114690 40.927 259 128 5 1 235 1 258 2.15e-51 170
MS.gene067401.t1 MTR_7g098450 49.180 122 59 1 121 242 211 329 3.98e-34 127
MS.gene067401.t1 MTR_7g098450 49.180 122 59 1 121 242 234 352 4.67e-34 127
MS.gene067401.t1 MTR_5g029910 52.941 102 48 0 136 237 119 220 5.72e-33 121
MS.gene067401.t1 MTR_7g099260 46.721 122 59 2 131 246 226 347 2.25e-30 117
MS.gene067401.t1 MTR_1g073230 38.255 149 86 2 101 249 96 238 1.84e-25 103
MS.gene067401.t1 MTR_1g073230 45.455 110 59 1 133 241 266 375 1.04e-21 93.6
MS.gene067401.t1 MTR_3g463450 40.816 98 58 0 139 236 399 496 4.42e-19 87.0
MS.gene067401.t1 MTR_5g082130 38.318 107 66 0 137 243 296 402 1.31e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067401.t1 AT5G20190 62.626 99 37 0 139 237 156 254 2.13e-40 142
MS.gene067401.t1 AT1G80130 41.852 270 113 7 1 235 1 261 1.67e-39 140
MS.gene067401.t1 AT4G32340 59.000 100 40 1 139 237 110 209 6.17e-35 126
MS.gene067401.t1 AT4G17940 57.292 96 41 0 142 237 153 248 4.62e-34 125
MS.gene067401.t1 AT2G29670 40.650 123 71 1 131 253 412 532 4.14e-22 95.9
MS.gene067401.t1 AT2G29670 40.650 123 71 1 131 253 412 532 4.14e-22 95.9
MS.gene067401.t1 AT1G04530 47.368 95 49 1 142 236 124 217 3.92e-21 91.3
MS.gene067401.t1 AT1G04530 28.571 126 68 3 136 239 185 310 4.39e-11 62.8
MS.gene067401.t1 AT1G07280 41.346 104 61 0 138 241 434 537 1.30e-19 88.6
MS.gene067401.t1 AT1G07280 41.346 104 61 0 138 241 434 537 1.30e-19 88.6
MS.gene067401.t1 AT1G07280 41.346 104 61 0 138 241 434 537 1.30e-19 88.6
MS.gene067401.t1 AT3G47080 36.735 98 62 0 139 236 400 497 6.72e-14 71.6

Find 55 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTAAAAGAGAATTATT+TGG 0.185235 2.4:+1716449 None:intergenic
CTTGGACTTGCAAGTGTTCT+AGG 0.227205 2.4:+1716806 None:intergenic
CTCTCTATGCTGATTTAATA+TGG 0.230159 2.4:-1715888 MS.gene067401:CDS
TTTAACAGCCCTATCAAAAT+AGG 0.241375 2.4:+1715834 None:intergenic
GTATGTAGAAAGAGCCATTT+TGG 0.290128 2.4:-1715938 MS.gene067401:CDS
GGTTTGCTTCAATCATGTTT+TGG 0.294320 2.4:+1716471 None:intergenic
AAGTAGGTTCGTGGAGATTA+TGG 0.302005 2.4:-1715973 MS.gene067401:intron
ATCACTAGGGCTAGCCAAAA+TGG 0.330932 2.4:+1715924 None:intergenic
TAGTTTAGATAAGCAAGTTT+TGG 0.332832 2.4:-1716675 MS.gene067401:CDS
AGTAATGGGTGGTGGTGGTA+TGG 0.351405 2.4:-1716609 MS.gene067401:CDS
AATGGTAGTGGAAGAGATTC+TGG 0.357707 2.4:-1716554 MS.gene067401:CDS
GATTTATCTTACCAATCATC+TGG 0.363027 2.4:+1715805 None:intergenic
TTCTTTCCTTCCACACTCAA+TGG 0.370876 2.4:-1716864 MS.gene067401:CDS
GTAATGGGTGGTGGTGGTAT+GGG 0.372856 2.4:-1716608 MS.gene067401:CDS
CAAGTAAAAGAGAATTATTT+GGG 0.377661 2.4:+1716450 None:intergenic
TGGTGATTGAGTTCTTGTTC+AGG 0.381932 2.4:+1716833 None:intergenic
CTTCATATGCAAAATTCCTA+TGG 0.391469 2.4:-1714890 MS.gene067401:CDS
GAAAATAGTTCTCTCGTTGA+AGG 0.392335 2.4:+1716704 None:intergenic
GGTGGTATGGGGTGTGATGG+TGG 0.402385 2.4:-1716596 MS.gene067401:CDS
GGTGGTGGTATGGGGTGTGA+TGG 0.405771 2.4:-1716599 MS.gene067401:CDS
AAGTTGCAAACTTTAGTAAT+GGG 0.406381 2.4:-1716623 MS.gene067401:CDS
AGAGATTCTGGTGGTGGAAA+TGG 0.409069 2.4:-1716542 MS.gene067401:CDS
TGTGATGGTGGAAGTATTTG+TGG 0.443120 2.4:-1716584 MS.gene067401:CDS
AAAGTTGCAAACTTTAGTAA+TGG 0.445266 2.4:-1716624 MS.gene067401:CDS
AGTATTTGTGGTGGTTGTAA+TGG 0.447043 2.4:-1716572 MS.gene067401:CDS
TCTGGTGGTGGAAATGGAAA+TGG 0.452290 2.4:-1716536 MS.gene067401:CDS
AAAGATCAGGTGAAAGTGTA+TGG 0.469919 2.4:+1714817 None:intergenic
GGTGATTGAGTTCTTGTTCA+GGG 0.477042 2.4:+1716834 None:intergenic
TAATGGGTGGTGGTGGTATG+GGG 0.499472 2.4:-1716607 MS.gene067401:CDS
TGTGGTGGTTGTAATGGTAG+TGG 0.516522 2.4:-1716566 MS.gene067401:CDS
TTAAAAGTGATCCAGATGAT+TGG 0.517931 2.4:-1715816 MS.gene067401:intron
TTATCACATCAGCTATGTCC+TGG 0.518059 2.4:-1714913 MS.gene067401:intron
CAATTTGAAAAGTAGGTTCG+TGG 0.525753 2.4:-1715982 MS.gene067401:intron
CATCTTCTTCAGCGTCCCAT+AGG 0.538742 2.4:+1714874 None:intergenic
GGAAGGAAAGAACTTGGAAT+TGG 0.544342 2.4:+1716875 None:intergenic
ACTTTAGTAATGGGTGGTGG+TGG 0.545271 2.4:-1716614 MS.gene067401:CDS
AGTGGAAGAGATTCTGGTGG+TGG 0.546901 2.4:-1716548 MS.gene067401:CDS
GATAAAGCATCAGCATCACT+AGG 0.552225 2.4:+1715910 None:intergenic
AAGATTCCATTGAGTGTGGA+AGG 0.563863 2.4:+1716858 None:intergenic
TTCATATGCAAAATTCCTAT+GGG 0.567504 2.4:-1714889 MS.gene067401:CDS
GTGATTGAGTTCTTGTTCAG+GGG 0.572118 2.4:+1716835 None:intergenic
GAGTGTGGAAGGAAAGAACT+TGG 0.576678 2.4:+1716869 None:intergenic
GACTTGCAAGTGTTCTAGGA+AGG 0.580355 2.4:+1716810 None:intergenic
GGGGAAGATTCCATTGAGTG+TGG 0.597244 2.4:+1716854 None:intergenic
CAAACTTTAGTAATGGGTGG+TGG 0.599262 2.4:-1716617 MS.gene067401:CDS
AATGGATGGGAAAATAATGA+TGG 0.600399 2.4:-1716518 MS.gene067401:CDS
TTGCAAACTTTAGTAATGGG+TGG 0.605342 2.4:-1716620 MS.gene067401:CDS
TGGTGGAAATGGAAATGGAT+GGG 0.611749 2.4:-1716531 MS.gene067401:CDS
TGGTGATGATTCTTAAGAAG+TGG 0.624905 2.4:+1716767 None:intergenic
ATAAAGCATCAGCATCACTA+GGG 0.631318 2.4:+1715911 None:intergenic
TTGCAAGTGTTCTAGGAAGG+TGG 0.634929 2.4:+1716813 None:intergenic
GTGGTGGAAATGGAAATGGA+TGG 0.643918 2.4:-1716532 MS.gene067401:CDS
GATGGTGGAAGTATTTGTGG+TGG 0.659019 2.4:-1716581 MS.gene067401:CDS
TGGAGATTATGGTAAAGCAG+AGG 0.689369 2.4:-1715962 MS.gene067401:CDS
GGTAGTGGAAGAGATTCTGG+TGG 0.752433 2.4:-1716551 MS.gene067401:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACACAAATAAAATTATTT+AGG + chr2.4:1716323-1716342 None:intergenic 10.0%
!! AAAATATCAAACTTGAAATT+TGG - chr2.4:1715417-1715436 MS.gene067401:intron 15.0%
!! AATTAGATTATCTATCATTT+GGG - chr2.4:1716496-1716515 MS.gene067401:CDS 15.0%
!! ACAATATATAAATGAAGATT+AGG - chr2.4:1715550-1715569 MS.gene067401:intron 15.0%
!! TAATTAGATTATCTATCATT+TGG - chr2.4:1716495-1716514 MS.gene067401:CDS 15.0%
!! TATAACATCAAATAAAAATC+AGG + chr2.4:1716703-1716722 None:intergenic 15.0%
!! TGTATTGTGATTAAAATATA+TGG - chr2.4:1715637-1715656 MS.gene067401:intron 15.0%
!! AGAACAAAATATGTTACAAA+TGG + chr2.4:1716141-1716160 None:intergenic 20.0%
!! AGATAAATCTTAAATCTATG+TGG - chr2.4:1715875-1715894 MS.gene067401:CDS 20.0%
!! ATAAACATGAGAAATACTTA+GGG - chr2.4:1716165-1716184 MS.gene067401:intron 20.0%
!! ATAAAGTTCATAGATGAATT+AGG + chr2.4:1715931-1715950 None:intergenic 20.0%
!! CAAGTAAAAGAGAATTATTT+GGG + chr2.4:1715219-1715238 None:intergenic 20.0%
!! TAATGTTCAATTTGAAAAGT+AGG - chr2.4:1715677-1715696 MS.gene067401:intron 20.0%
!! TAGGTAAAATATTCTGTAAT+TGG - chr2.4:1715574-1715593 MS.gene067401:intron 20.0%
!! TTAAGTTATGTGTTGAAATA+TGG + chr2.4:1715385-1715404 None:intergenic 20.0%
!! TTAGTAATTAGTTGTTAGAT+TGG + chr2.4:1716590-1716609 None:intergenic 20.0%
!! TTCTTTCCAAAAAAATACAA+GGG - chr2.4:1716666-1716685 MS.gene067401:CDS 20.0%
!! TTTCTTTCCAAAAAAATACA+AGG - chr2.4:1716665-1716684 MS.gene067401:CDS 20.0%
!!! TTTATTTGTGTTTCTAGTTA+AGG - chr2.4:1716330-1716349 MS.gene067401:intron 20.0%
! AAACACAAATGTAAAAGGTT+TGG - chr2.4:1716190-1716209 MS.gene067401:intron 25.0%
! AAAGTTGCAAACTTTAGTAA+TGG - chr2.4:1715042-1715061 MS.gene067401:intron 25.0%
! AAGTATTTCTCATGTTTATG+CGG + chr2.4:1716164-1716183 None:intergenic 25.0%
! AAGTTGCAAACTTTAGTAAT+GGG - chr2.4:1715043-1715062 MS.gene067401:intron 25.0%
! ATATAAACCAAATGATACAG+TGG - chr2.4:1716056-1716075 MS.gene067401:intron 25.0%
! ATATAAATGAAGATTAGGCT+AGG - chr2.4:1715555-1715574 MS.gene067401:intron 25.0%
! ATGTGCAAATTTGTATATGT+AGG + chr2.4:1716380-1716399 None:intergenic 25.0%
! CATAAACATGAGAAATACTT+AGG - chr2.4:1716164-1716183 MS.gene067401:intron 25.0%
! CCAAGTAAAAGAGAATTATT+TGG + chr2.4:1715220-1715239 None:intergenic 25.0%
! GTGGACATCATAATATTAAT+TGG + chr2.4:1716414-1716433 None:intergenic 25.0%
! TCTAATTATCACATCACATT+TGG + chr2.4:1716483-1716502 None:intergenic 25.0%
! TTCATATGCAAAATTCCTAT+GGG - chr2.4:1716777-1716796 MS.gene067401:CDS 25.0%
!! ACGAATTAGACTTAAACTTT+TGG + chr2.4:1715512-1715531 None:intergenic 25.0%
!! CCAAATAATTCTCTTTTACT+TGG - chr2.4:1715217-1715236 MS.gene067401:intron 25.0%
!! TAGTTTAGATAAGCAAGTTT+TGG - chr2.4:1714991-1715010 MS.gene067401:intron 25.0%
!!! AACAAACCCTTGTATTTTTT+TGG + chr2.4:1716675-1716694 None:intergenic 25.0%
!!! ATTTTTGTTCTGTTTCTTCT+TGG + chr2.4:1714922-1714941 None:intergenic 25.0%
!!! TTATGCTAAGTTTTTGAAAG+AGG - chr2.4:1715243-1715262 MS.gene067401:intron 25.0%
AATGGATGGGAAAATAATGA+TGG - chr2.4:1715148-1715167 MS.gene067401:intron 30.0%
CTTCATATGCAAAATTCCTA+TGG - chr2.4:1716776-1716795 MS.gene067401:CDS 30.0%
GATTTATCTTACCAATCATC+TGG + chr2.4:1715864-1715883 None:intergenic 30.0%
GGGATAAACACAAATGTAAA+AGG - chr2.4:1716185-1716204 MS.gene067401:intron 30.0%
TGGATAGCTCATCTAATTTA+CGG - chr2.4:1716521-1716540 MS.gene067401:CDS 30.0%
TTAAAAGTGATCCAGATGAT+TGG - chr2.4:1715850-1715869 MS.gene067401:CDS 30.0%
TTAGGAGAATGTATACATAG+AGG + chr2.4:1715913-1715932 None:intergenic 30.0%
TTTAACAGCCCTATCAAAAT+AGG + chr2.4:1715835-1715854 None:intergenic 30.0%
! GATTATCTATCATTTGGGAT+TGG - chr2.4:1716501-1716520 MS.gene067401:CDS 30.0%
!! CTCTCTATGCTGATTTAATA+TGG - chr2.4:1715778-1715797 MS.gene067401:intron 30.0%
!!! AGACGTTTTGCTTTATTTTC+TGG - chr2.4:1716634-1716653 MS.gene067401:CDS 30.0%
AACATCTACCATGTCACATA+TGG + chr2.4:1715978-1715997 None:intergenic 35.0%
AGCTCATCTAATTTACGGTA+GGG - chr2.4:1716526-1716545 MS.gene067401:CDS 35.0%
AGTATTTGTGGTGGTTGTAA+TGG - chr2.4:1715094-1715113 MS.gene067401:intron 35.0%
CAATTTGAAAAGTAGGTTCG+TGG - chr2.4:1715684-1715703 MS.gene067401:intron 35.0%
CTCTTAAAAGACCAACTATC+AGG - chr2.4:1716433-1716452 MS.gene067401:CDS 35.0%
GAAAATAGTTCTCTCGTTGA+AGG + chr2.4:1714965-1714984 None:intergenic 35.0%
GAAGAAGGTGGTAAAAAAGT+AGG - chr2.4:1715019-1715038 MS.gene067401:intron 35.0%
GAATTCAGATTGCATGATGT+CGG + chr2.4:1715477-1715496 None:intergenic 35.0%
TAGCTCATCTAATTTACGGT+AGG - chr2.4:1716525-1716544 MS.gene067401:CDS 35.0%
TCTTGATCCACTGTATCATT+TGG + chr2.4:1716066-1716085 None:intergenic 35.0%
TGGTCCACATGATTTGAATT+CGG + chr2.4:1716570-1716589 None:intergenic 35.0%
TTAGCTCCTAGAAAAAGATC+AGG + chr2.4:1716865-1716884 None:intergenic 35.0%
! AAAGATCAGGTGAAAGTGTA+TGG + chr2.4:1716852-1716871 None:intergenic 35.0%
! ATAAAGCATCAGCATCACTA+GGG + chr2.4:1715758-1715777 None:intergenic 35.0%
! CTTTCACCTGATCTTTTTCT+AGG - chr2.4:1716856-1716875 MS.gene067401:CDS 35.0%
! GTATGTAGAAAGAGCCATTT+TGG - chr2.4:1715728-1715747 MS.gene067401:intron 35.0%
! TGGTGATGATTCTTAAGAAG+TGG + chr2.4:1714902-1714921 None:intergenic 35.0%
! TTGCAAACTTTAGTAATGGG+TGG - chr2.4:1715046-1715065 MS.gene067401:intron 35.0%
!! GATCTTTTTCTAGGAGCTAA+TGG - chr2.4:1716865-1716884 MS.gene067401:CDS 35.0%
!! GGCTCTTATCAGTTTTATGT+TGG + chr2.4:1716831-1716850 None:intergenic 35.0%
!! GGTTTGCTTCAATCATGTTT+TGG + chr2.4:1715198-1715217 None:intergenic 35.0%
!!! AGCTGAAGCCTATTTTGATA+GGG - chr2.4:1715824-1715843 MS.gene067401:CDS 35.0%
!!! CAAGTTTTGGATCATGAAGA+AGG - chr2.4:1715004-1715023 MS.gene067401:intron 35.0%
!!! GATAGTTGGTCTTTTAAGAG+TGG + chr2.4:1716433-1716452 None:intergenic 35.0%
!!! GGTGCAGATTTTTTATGTCT+TGG + chr2.4:1714881-1714900 None:intergenic 35.0%
AAGATTCCATTGAGTGTGGA+AGG + chr2.4:1714811-1714830 None:intergenic 40.0%
AAGTAGGTTCGTGGAGATTA+TGG - chr2.4:1715693-1715712 MS.gene067401:intron 40.0%
AGACCAACTATCAGGAACAA+AGG - chr2.4:1716441-1716460 MS.gene067401:CDS 40.0%
ATTAATTCCCCGCATTCATG+CGG - chr2.4:1715322-1715341 MS.gene067401:intron 40.0%
CTTCCTTTGTTCCTGATAGT+TGG + chr2.4:1716447-1716466 None:intergenic 40.0%
GGAAGGAAAGAACTTGGAAT+TGG + chr2.4:1714794-1714813 None:intergenic 40.0%
GGTCCACATGATTTGAATTC+GGG + chr2.4:1716569-1716588 None:intergenic 40.0%
GGTGATTGAGTTCTTGTTCA+GGG + chr2.4:1714835-1714854 None:intergenic 40.0%
GTGATTGAGTTCTTGTTCAG+GGG + chr2.4:1714834-1714853 None:intergenic 40.0%
TACGGTAGGGTCAAAAAAGT+TGG - chr2.4:1716539-1716558 MS.gene067401:CDS 40.0%
TAGAGACACCATATGTGACA+TGG - chr2.4:1715967-1715986 MS.gene067401:CDS 40.0%
TGGAGATTATGGTAAAGCAG+AGG - chr2.4:1715704-1715723 MS.gene067401:intron 40.0%
TGGTGATTGAGTTCTTGTTC+AGG + chr2.4:1714836-1714855 None:intergenic 40.0%
TGGTGGAAATGGAAATGGAT+GGG - chr2.4:1715135-1715154 MS.gene067401:intron 40.0%
TTATCACATCAGCTATGTCC+TGG - chr2.4:1716753-1716772 MS.gene067401:CDS 40.0%
TTCTTTCCTTCCACACTCAA+TGG - chr2.4:1714802-1714821 MS.gene067401:CDS 40.0%
! GATAAAGCATCAGCATCACT+AGG + chr2.4:1715759-1715778 None:intergenic 40.0%
! GGAATTTTGCATATGAAGCC+AGG + chr2.4:1716774-1716793 None:intergenic 40.0%
! GTCGGTACATTGATGATTGT+TGG + chr2.4:1715459-1715478 None:intergenic 40.0%
!! AATGGTAGTGGAAGAGATTC+TGG - chr2.4:1715112-1715131 MS.gene067401:intron 40.0%
!! CAAACTTTAGTAATGGGTGG+TGG - chr2.4:1715049-1715068 MS.gene067401:intron 40.0%
!! GTTTTGGATCATGAAGAAGG+TGG - chr2.4:1715007-1715026 MS.gene067401:intron 40.0%
!! TGTGATGGTGGAAGTATTTG+TGG - chr2.4:1715082-1715101 MS.gene067401:intron 40.0%
!!! GAGCTGAAGCCTATTTTGAT+AGG - chr2.4:1715823-1715842 MS.gene067401:CDS 40.0%
ATGTGCTAACCGCATGAATG+CGG + chr2.4:1715334-1715353 None:intergenic 45.0%
CAGTGGTTGTTGATCGAGAT+AGG - chr2.4:1715354-1715373 MS.gene067401:intron 45.0%
CTTGGACTTGCAAGTGTTCT+AGG + chr2.4:1714863-1714882 None:intergenic 45.0%
GAGTGTGGAAGGAAAGAACT+TGG + chr2.4:1714800-1714819 None:intergenic 45.0%
GGACCCGAATTCAAATCATG+TGG - chr2.4:1716563-1716582 MS.gene067401:CDS 45.0%
GGTAGGGTCAAAAAAGTTGG+AGG - chr2.4:1716542-1716561 MS.gene067401:CDS 45.0%
TGTGGTGGTTGTAATGGTAG+TGG - chr2.4:1715100-1715119 MS.gene067401:intron 45.0%
! GTGGTGGAAATGGAAATGGA+TGG - chr2.4:1715134-1715153 MS.gene067401:intron 45.0%
!! ACTTTAGTAATGGGTGGTGG+TGG - chr2.4:1715052-1715071 MS.gene067401:intron 45.0%
!! AGAGATTCTGGTGGTGGAAA+TGG - chr2.4:1715124-1715143 MS.gene067401:intron 45.0%
!! ATCACTAGGGCTAGCCAAAA+TGG + chr2.4:1715745-1715764 None:intergenic 45.0%
!! GACTTGCAAGTGTTCTAGGA+AGG + chr2.4:1714859-1714878 None:intergenic 45.0%
!! GATGGTGGAAGTATTTGTGG+TGG - chr2.4:1715085-1715104 MS.gene067401:intron 45.0%
!! TCTGGTGGTGGAAATGGAAA+TGG - chr2.4:1715130-1715149 MS.gene067401:intron 45.0%
!! TTGCAAGTGTTCTAGGAAGG+TGG + chr2.4:1714856-1714875 None:intergenic 45.0%
!!! TTTTTATTTTTAAGATAAAT+TGG - chr2.4:1716231-1716250 MS.gene067401:intron 5.0%
AGTGGAAGAGATTCTGGTGG+TGG - chr2.4:1715118-1715137 MS.gene067401:intron 50.0%
CATCTTCTTCAGCGTCCCAT+AGG + chr2.4:1716795-1716814 None:intergenic 50.0%
GGGGAAGATTCCATTGAGTG+TGG + chr2.4:1714815-1714834 None:intergenic 50.0%
TCATGCGGTTAGCACATCAG+TGG - chr2.4:1715337-1715356 MS.gene067401:intron 50.0%
TGTGCTAACCGCATGAATGC+GGG + chr2.4:1715333-1715352 None:intergenic 50.0%
!! AGTAATGGGTGGTGGTGGTA+TGG - chr2.4:1715057-1715076 MS.gene067401:intron 50.0%
!! GGTAGTGGAAGAGATTCTGG+TGG - chr2.4:1715115-1715134 MS.gene067401:intron 50.0%
!! GTAATGGGTGGTGGTGGTAT+GGG - chr2.4:1715058-1715077 MS.gene067401:intron 50.0%
!! TAATGGGTGGTGGTGGTATG+GGG - chr2.4:1715059-1715078 MS.gene067401:intron 50.0%
GTGCTAACCGCATGAATGCG+GGG + chr2.4:1715332-1715351 None:intergenic 55.0%
GGTGGTATGGGGTGTGATGG+TGG - chr2.4:1715070-1715089 MS.gene067401:intron 60.0%
! GGTGGTGGTATGGGGTGTGA+TGG - chr2.4:1715067-1715086 MS.gene067401:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 1714767 1716921 1714767 ID=MS.gene067401
chr2.4 mRNA 1714767 1716921 1714767 ID=MS.gene067401.t1;Parent=MS.gene067401
chr2.4 exon 1716424 1716921 1716424 ID=MS.gene067401.t1.exon1;Parent=MS.gene067401.t1
chr2.4 CDS 1716424 1716921 1716424 ID=cds.MS.gene067401.t1;Parent=MS.gene067401.t1
chr2.4 exon 1715817 1715989 1715817 ID=MS.gene067401.t1.exon2;Parent=MS.gene067401.t1
chr2.4 CDS 1715817 1715989 1715817 ID=cds.MS.gene067401.t1;Parent=MS.gene067401.t1
chr2.4 exon 1714767 1714923 1714767 ID=MS.gene067401.t1.exon3;Parent=MS.gene067401.t1
chr2.4 CDS 1714767 1714923 1714767 ID=cds.MS.gene067401.t1;Parent=MS.gene067401.t1
Gene Sequence

>MS.gene067401

ATGTTACTAAGAAGCTATAGTGCACCAATTCCAAGTTCTTTCCTTCCACACTCAATGGAATCTTCCCCTGAACAAGAACTCAATCACCACCTTCCTAGAACACTTGCAAGTCCAAGACATAAAAAATCTGCACCACTTCTTAAGAATCATCACCAAGAAGAAACAGAACAAAAATTTCACAAGAAAAAAACAACACCTTCAACGAGAGAACTATTTTCAAGCTCTAGTTTAGATAAGCAAGTTTTGGATCATGAAGAAGGTGGTAAAAAAGTAGGAAAGTTGCAAACTTTAGTAATGGGTGGTGGTGGTATGGGGTGTGATGGTGGAAGTATTTGTGGTGGTTGTAATGGTAGTGGAAGAGATTCTGGTGGTGGAAATGGAAATGGATGGGAAAATAATGATGGTAGAGATGAAACTGATGCTTATTACCAAAACATGATTGAAGCAAACCCAAATAATTCTCTTTTACTTGGAAATTATGCTAAGTTTTTGAAAGAGGTAATTAATTTGATTTATTTGAGTAAGAGTGATTGACTACTTGAGCTTGATCATGCTATTAATTCCCCGCATTCATGCGGTTAGCACATCAGTGGTTGTTGATCGAGATAGGACGTTCCATATTTCAACACATAACTTAATTTTTTTAAACTAAAATATCAAACTTGAAATTTGGATCGTTTAATCTAGATCCAACAATCATCAATGTACCGACATCATGCAATCTGAATTCGAAAACTATGAACCAAAAGTTTAAGTCTAATTCGTCAGATCAAATACTTACTTACAATATATAAATGAAGATTAGGCTAGGTAAAATATTCTGTAATTGGATCATCATTTTGAGAAATTAAAATGTAAAGAGAAATATAGTGTATTGTGATTAAAATATATGGTTTGTCACATAATAAATTAATGTTCAATTTGAAAAGTAGGTTCGTGGAGATTATGGTAAAGCAGAGGAGTATGTAGAAAGAGCCATTTTGGCTAGCCCTAGTGATGCTGATGCTTTATCTCTCTATGCTGATTTAATATGGCAAACAGAGAAGAATGCTGATCGAGCTGAAGCCTATTTTGATAGGGCTGTTAAAAGTGATCCAGATGATTGGTAAGATAAATCTTAAATCTATGTGGATTATGTCTTTTCCTCTATGTATACATTCTCCTAATTCATCTATGAACTTTATTGTTTGAACATCAAACTAGAGACACCATATGTGACATGGTAGATGTTTATATCTCTTTTTCTTTTGCTTTTTATCTTCTATAATTTACATATTTAAAAAATGCAAATATAAACCAAATGATACAGTGGATCAAGATTTTGATGTTTAAAAGTCATTTATCTATATAGAACTAGATGCATCTTTCATTCCATTTGTAACATATTTTGTTCTCCGCATAAACATGAGAAATACTTAGGGATAAACACAAATGTAAAAGGTTTGGACACACTCACACAAATGCTTTTTATTTTTAAGATAAATTGGTTTAATGATGTTGAAAGATGTGACTAATTTATTTATTATTTAATTTTTTTTATTGTTGAGTGTGTGCCTAAATAATTTTATTTGTGTTTCTAGTTAAGGCTTGTTAATGTGTTAAATTACATACCTACATATACAAATTTGCACATGATAGAATAATCCAATTAATATTATGATGTCCACTCTTAAAAGACCAACTATCAGGAACAAAGGAAGTTCGAGTCATCAGCCAAATGTGATGTGATAATTAGATTATCTATCATTTGGGATTGGATAGCTCATCTAATTTACGGTAGGGTCAAAAAAGTTGGAGGACCCGAATTCAAATCATGTGGACCAATCTAACAACTAATTACTAACATTGATTGCTGCAAAAATTCTTTAGACGTTTTGCTTTATTTTCTGGCTTTTTTTTTTCTTTCCAAAAAAATACAAGGGTTTGTTTGTGTCCTGATTTTTATTTGATGTTATATATAAAAAACTAATGTGTAAATTCATATTATTATCACATCAGCTATGTCCTGGCTTCATATGCAAAATTCCTATGGGACGCTGAAGAAGATGAAGATAATGACTGCCAACATAAAACTGATAAGAGCCATACACTTTCACCTGATCTTTTTCTAGGAGCTAATGGTCGTTCTCATGTCACTGCAACCTCTAAAATCTAA
Protein sequence

>MS.gene067401.t1

MLLRSYSAPIPSSFLPHSMESSPEQELNHHLPRTLASPRHKKSAPLLKNHHQEETEQKFHKKKTTPSTRELFSSSSLDKQVLDHEEGGKKVGKLQTLVMGGGGMGCDGGSICGGCNGSGRDSGGGNGNGWENNDGRDETDAYYQNMIEANPNNSLLLGNYAKFLKEVRGDYGKAEEYVERAILASPSDADALSLYADLIWQTEKNADRAEAYFDRAVKSDPDDCYVLASYAKFLWDAEEDEDNDCQHKTDKSHTLSPDLFLGANGRSHVTATSKI