Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053431.t1 | AFK37246.1 | 98.6 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 1.20E-72 | 283.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053431.t1 | Q84Y18 | 62.5 | 128 | 45 | 2 | 1 | 128 | 1 | 125 | 1.5e-37 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053431.t1 | B7FHQ7 | 98.6 | 141 | 2 | 0 | 1 | 141 | 1 | 141 | 9.0e-73 | 283.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050504 | MS.gene053431 | -0.803806 | 2.92E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene059677 | -0.805249 | 1.46E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene063726 | 0.826331 | 2.88E-54 | -1.69E-46 |
| MS.gene053431 | MS.gene067401 | 0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene09661 | -0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene053431 | MS.gene22219 | -0.803376 | 3.59E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene24474 | -0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene053431 | MS.gene25666 | -0.804098 | 2.54E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene25675 | -0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene25677 | -0.80326 | 3.79E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene44487 | -0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene44913 | -0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene053431 | MS.gene72108 | -0.80067 | 1.29E-48 | -1.69E-46 |
| MS.gene053431 | MS.gene82401 | -0.817224 | 3.68E-52 | -1.69E-46 |
| MS.gene053431 | MS.gene82403 | -0.818043 | 2.41E-52 | -1.69E-46 |
| MS.gene053431 | MS.gene82958 | 0.810511 | 1.11E-50 | -1.69E-46 |
| MS.gene053431 | MS.gene83611 | 0.807543 | 4.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053431.t1 | MTR_4g036620 | 78.788 | 198 | 25 | 3 | 116 | 313 | 1 | 181 | 1.83e-39 | 138 |
| MS.gene053431.t1 | MTR_4g036620 | 85.156 | 128 | 17 | 1 | 186 | 313 | 47 | 172 | 1.00e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053431.t1 | AT2G28910 | 60.714 | 168 | 60 | 3 | 1 | 168 | 1 | 162 | 1.38e-53 | 179 |
| MS.gene053431.t1 | AT2G28910 | 60.714 | 168 | 60 | 3 | 1 | 168 | 1 | 162 | 1.38e-53 | 179 |
| MS.gene053431.t1 | AT2G28910 | 60.714 | 168 | 60 | 3 | 1 | 168 | 1 | 162 | 1.38e-53 | 179 |
Find 96 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCCTTGTCATCCTTATT+AGG | 0.271429 | 1.4:+28983820 | None:intergenic |
| ACCATGGAGACGATGATTAA+AGG | 0.292874 | 1.4:-28982976 | None:intergenic |
| TGACCCTTATGCACCTAATA+AGG | 0.299489 | 1.4:-28983833 | MS.gene053431:CDS |
| TTCGCATGCCTGCGAACAAC+AGG | 0.319189 | 1.4:-28983912 | MS.gene053431:CDS |
| AAGGGCTGAGAAGGTGGATA+AGG | 0.352316 | 1.4:-28983548 | MS.gene053431:CDS |
| TCATCCTTATTAGGTGCATA+AGG | 0.362970 | 1.4:+28983829 | None:intergenic |
| TCTGCATCGGGCCCTGCATT+TGG | 0.368781 | 1.4:+28983784 | None:intergenic |
| TCTGCCATATGCCATGGGTT+TGG | 0.371612 | 1.4:+28983869 | None:intergenic |
| ATCATCAACTGACAGTGATT+CGG | 0.382705 | 1.4:-28983065 | MS.gene053431:CDS |
| TCATCAACTGACAGTGATTC+GGG | 0.386672 | 1.4:-28983064 | MS.gene053431:CDS |
| GGACACATCCACTTCAGAAT+TGG | 0.389713 | 1.4:+28983714 | None:intergenic |
| AGAGCTATTGCTAAAAGGTC+TGG | 0.393009 | 1.4:-28983448 | MS.gene053431:CDS |
| TTGAGAGAGCTATTGCTAAA+AGG | 0.406535 | 1.4:-28983453 | MS.gene053431:CDS |
| CAGATGACAGTGATGAATAT+AGG | 0.408636 | 1.4:-28983207 | MS.gene053431:CDS |
| AGGGCTGAGAAGGTGGATAA+GGG | 0.420977 | 1.4:-28983547 | MS.gene053431:CDS |
| GCAAGAAGTGTGGCCGTGTT+GGG | 0.427555 | 1.4:-28983681 | MS.gene053431:CDS |
| GCCATATGCCATGGGTTTGG+AGG | 0.428657 | 1.4:+28983872 | None:intergenic |
| CCCTCCAAACCCATGGCATA+TGG | 0.432489 | 1.4:-28983873 | MS.gene053431:CDS |
| AGAGGGAGCACAGGAGAAGC+AGG | 0.433789 | 1.4:-28983243 | MS.gene053431:CDS |
| ACACTTCTTGCAAGCTCCAC+GGG | 0.452494 | 1.4:+28983693 | None:intergenic |
| GCATATGCATTATCTGCATC+GGG | 0.453124 | 1.4:+28983772 | None:intergenic |
| GAGAGGTTCTTATAGAAAGA+AGG | 0.453802 | 1.4:-28983407 | MS.gene053431:CDS |
| GGCATATGCATTATCTGCAT+CGG | 0.454933 | 1.4:+28983771 | None:intergenic |
| CTATATTCATCACTGTCATC+TGG | 0.458876 | 1.4:+28983208 | None:intergenic |
| GTTGAAGGGAAGGGCTGAGA+AGG | 0.461223 | 1.4:-28983557 | MS.gene053431:CDS |
| CATCCTTATTAGGTGCATAA+GGG | 0.464636 | 1.4:+28983830 | None:intergenic |
| GTAGGAAGGAGAAGAGGAGA+AGG | 0.468769 | 1.4:-28983168 | MS.gene053431:CDS |
| AATGCATATGCCAGCTTCCA+AGG | 0.472754 | 1.4:-28983760 | MS.gene053431:CDS |
| TCCTTTAATCATCGTCTCCA+TGG | 0.473522 | 1.4:+28982975 | None:intergenic |
| GGTTCGAATGGATAGGTTGA+AGG | 0.476783 | 1.4:-28983572 | MS.gene053431:CDS |
| CTTCCTCCTCCTCCTTTCAA+CGG | 0.477757 | 1.4:+28983270 | None:intergenic |
| GAAGGGAAGGGCTGAGAAGG+TGG | 0.480781 | 1.4:-28983554 | MS.gene053431:CDS |
| TCTCAAAGTCAGCCAAATGC+AGG | 0.481457 | 1.4:-28983796 | MS.gene053431:CDS |
| GTCACTGGGGTTGGTTCGAA+TGG | 0.482815 | 1.4:-28983584 | MS.gene053431:CDS |
| ACTGACAGTGATTCGGGTGA+TGG | 0.486358 | 1.4:-28983058 | MS.gene053431:CDS |
| TAGCAAGCTGTAGAAGTCCT+TGG | 0.490240 | 1.4:+28983743 | None:intergenic |
| GGCATATGGCAGAGTGCCAT+TGG | 0.492212 | 1.4:-28983859 | MS.gene053431:CDS |
| AAAGGAGTGTTACGACTAAG+AGG | 0.492225 | 1.4:-28983315 | MS.gene053431:CDS |
| ATGAATATAGGCACAAGAAA+AGG | 0.494769 | 1.4:-28983195 | MS.gene053431:CDS |
| TGGATATGATGGTTCAAGGA+AGG | 0.495433 | 1.4:-28983038 | MS.gene053431:CDS |
| CTGTAGAAGTCCTTGGAAGC+TGG | 0.496883 | 1.4:+28983750 | None:intergenic |
| TGCAAGAAGTGTGGCCGTGT+TGG | 0.503344 | 1.4:-28983682 | MS.gene053431:CDS |
| CAAAGATGACAAGGAGGAGA+AGG | 0.506036 | 1.4:-28983623 | MS.gene053431:CDS |
| GGAAGAGTAGGAAGGAGAAG+AGG | 0.509538 | 1.4:-28983174 | MS.gene053431:CDS |
| CTTAAGATGCCGGCTACAGC+AGG | 0.510845 | 1.4:-28983940 | None:intergenic |
| TTTGATGCAATGCAGTCACT+GGG | 0.513459 | 1.4:-28983598 | MS.gene053431:CDS |
| GAGCTATTGCTAAAAGGTCT+GGG | 0.516028 | 1.4:-28983447 | MS.gene053431:CDS |
| AGAGAGGTAGGGAAAAGAAA+AGG | 0.516059 | 1.4:-28983333 | MS.gene053431:CDS |
| TGCAATGCAGTCACTGGGGT+TGG | 0.522857 | 1.4:-28983593 | MS.gene053431:CDS |
| GTGATGGATATGATGGTTCA+AGG | 0.523675 | 1.4:-28983042 | MS.gene053431:CDS |
| CACACTTCTTGCAAGCTCCA+CGG | 0.529458 | 1.4:+28983692 | None:intergenic |
| GGATATGATGGTTCAAGGAA+GGG | 0.532761 | 1.4:-28983037 | MS.gene053431:CDS |
| ATGATGGTTCAAGGAAGGGT+AGG | 0.535208 | 1.4:-28983033 | MS.gene053431:CDS |
| TGGCACTCTGCCATATGCCA+TGG | 0.538082 | 1.4:+28983863 | None:intergenic |
| CCATATGCCATGGGTTTGGA+GGG | 0.538353 | 1.4:+28983873 | None:intergenic |
| TTTCAGATGATTCCGTTGAA+AGG | 0.540800 | 1.4:-28983282 | MS.gene053431:CDS |
| AAGAAAGTTAGTGAGAAGAG+AGG | 0.546996 | 1.4:-28983424 | MS.gene053431:CDS |
| TGATGGTTCAAGGAAGGGTA+GGG | 0.549960 | 1.4:-28983032 | MS.gene053431:CDS |
| CAGATGATTCCGTTGAAAGG+AGG | 0.552094 | 1.4:-28983279 | MS.gene053431:CDS |
| ATGATTCCGTTGAAAGGAGG+AGG | 0.553371 | 1.4:-28983276 | MS.gene053431:CDS |
| GGCACAAGAAAAGGAAGAGT+AGG | 0.560603 | 1.4:-28983186 | MS.gene053431:CDS |
| TGTTGAGAGCTCAGAAGAGG+AGG | 0.561377 | 1.4:-28983518 | MS.gene053431:CDS |
| CTGTGAACCCTGTTGTTCGC+AGG | 0.564502 | 1.4:+28983904 | None:intergenic |
| TGGGGTTGGTTCGAATGGAT+AGG | 0.573310 | 1.4:-28983579 | MS.gene053431:CDS |
| GAATGGATAGGTTGAAGGGA+AGG | 0.573691 | 1.4:-28983567 | MS.gene053431:CDS |
| GGCACTCTGCCATATGCCAT+GGG | 0.575450 | 1.4:+28983864 | None:intergenic |
| GTTCGAATGGATAGGTTGAA+GGG | 0.583350 | 1.4:-28983571 | MS.gene053431:CDS |
| GGGAGCACAGGAGAAGCAGG+AGG | 0.583388 | 1.4:-28983240 | MS.gene053431:CDS |
| GATGCCGGCTACAGCAGGTA+GGG | 0.587055 | 1.4:-28983935 | MS.gene053431:CDS |
| CAAGAAAAGGAAGAGTAGGA+AGG | 0.588243 | 1.4:-28983182 | MS.gene053431:CDS |
| CAATGTTGAGAGCTCAGAAG+AGG | 0.592360 | 1.4:-28983521 | MS.gene053431:CDS |
| AAGAGGAAGAGACGCCACCA+TGG | 0.594257 | 1.4:-28982992 | MS.gene053431:CDS |
| ATTCCGTTGAAAGGAGGAGG+AGG | 0.595082 | 1.4:-28983273 | MS.gene053431:CDS |
| TAAGATAACCAATTCTGAAG+TGG | 0.602004 | 1.4:-28983722 | MS.gene053431:CDS |
| ATGCCGCGAAGTAGAATCCT+CGG | 0.602845 | 1.4:+28983111 | None:intergenic |
| GATTCGGGTGATGGATATGA+TGG | 0.604978 | 1.4:-28983049 | MS.gene053431:CDS |
| CGAACCCTACCTGCTGTAGC+CGG | 0.605040 | 1.4:+28983931 | None:intergenic |
| AATGGATAGGTTGAAGGGAA+GGG | 0.608564 | 1.4:-28983566 | MS.gene053431:CDS |
| TGCATAAGGGTCATAGCCAA+TGG | 0.608888 | 1.4:+28983843 | None:intergenic |
| AGATGCCGGCTACAGCAGGT+AGG | 0.611700 | 1.4:-28983936 | MS.gene053431:CDS |
| TTCTGATTCTGAAACATCCG+AGG | 0.615461 | 1.4:-28983128 | MS.gene053431:CDS |
| CATCCGAGGATTCTACTTCG+CGG | 0.620003 | 1.4:-28983114 | MS.gene053431:CDS |
| GGAGCACAGGAGAAGCAGGA+GGG | 0.620957 | 1.4:-28983239 | MS.gene053431:CDS |
| CGTGGAGCTTGCAAGAAGTG+TGG | 0.622651 | 1.4:-28983691 | MS.gene053431:CDS |
| TGTTCTTGCACTGAAACTTG+AGG | 0.624243 | 1.4:+28983656 | None:intergenic |
| CTCAAAGTCAGCCAAATGCA+GGG | 0.628373 | 1.4:-28983795 | MS.gene053431:CDS |
| TGCACCTAATAAGGATGACA+AGG | 0.631127 | 1.4:-28983824 | MS.gene053431:CDS |
| AGTGCAGCCCTCCAAACCCA+TGG | 0.642591 | 1.4:-28983880 | MS.gene053431:CDS |
| GAAACTTGAGGTGCCCAACA+CGG | 0.656694 | 1.4:+28983668 | None:intergenic |
| TGTGAAAATCAAAGATGACA+AGG | 0.663600 | 1.4:-28983632 | MS.gene053431:CDS |
| TTTAATCATCGTCTCCATGG+TGG | 0.666454 | 1.4:+28982978 | None:intergenic |
| AAGGAGTGTTACGACTAAGA+GGG | 0.668536 | 1.4:-28983314 | MS.gene053431:CDS |
| GAAAATCAAAGATGACAAGG+AGG | 0.668843 | 1.4:-28983629 | MS.gene053431:CDS |
| TCTGAAGTGGATGTGTCCCG+TGG | 0.679307 | 1.4:-28983709 | MS.gene053431:CDS |
| TCGCATGCCTGCGAACAACA+GGG | 0.684833 | 1.4:-28983911 | MS.gene053431:CDS |
| TTGATGCAATGCAGTCACTG+GGG | 0.760393 | 1.4:-28983597 | MS.gene053431:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAAAAATCAGAGAAG+AGG | - | chr1.4:28983904-28983923 | MS.gene053431:CDS | 20.0% |
| AAAGAGAAAAAAGAGAGGTA+GGG | - | chr1.4:28983569-28983588 | MS.gene053431:CDS | 30.0% | |
| ATGAATATAGGCACAAGAAA+AGG | - | chr1.4:28983718-28983737 | MS.gene053431:CDS | 30.0% | |
| TGTGAAAATCAAAGATGACA+AGG | - | chr1.4:28983281-28983300 | MS.gene053431:CDS | 30.0% | |
| ! | TAAGATAACCAATTCTGAAG+TGG | - | chr1.4:28983191-28983210 | MS.gene053431:CDS | 30.0% |
| !!! | TACCTCTCTTTTTTCTCTTT+CGG | + | chr1.4:28983569-28983588 | None:intergenic | 30.0% |
| AAGAAAGTTAGTGAGAAGAG+AGG | - | chr1.4:28983489-28983508 | MS.gene053431:CDS | 35.0% | |
| ATCATCAACTGACAGTGATT+CGG | - | chr1.4:28983848-28983867 | MS.gene053431:CDS | 35.0% | |
| CAGATGACAGTGATGAATAT+AGG | - | chr1.4:28983706-28983725 | MS.gene053431:CDS | 35.0% | |
| CATCCTTATTAGGTGCATAA+GGG | + | chr1.4:28983086-28983105 | None:intergenic | 35.0% | |
| CTATATTCATCACTGTCATC+TGG | + | chr1.4:28983708-28983727 | None:intergenic | 35.0% | |
| GAAAATCAAAGATGACAAGG+AGG | - | chr1.4:28983284-28983303 | MS.gene053431:CDS | 35.0% | |
| GAAAGAGAAAAAAGAGAGGT+AGG | - | chr1.4:28983568-28983587 | MS.gene053431:CDS | 35.0% | |
| GAGAGGTTCTTATAGAAAGA+AGG | - | chr1.4:28983506-28983525 | MS.gene053431:CDS | 35.0% | |
| TCATCCTTATTAGGTGCATA+AGG | + | chr1.4:28983087-28983106 | None:intergenic | 35.0% | |
| TTGAGAGAGCTATTGCTAAA+AGG | - | chr1.4:28983460-28983479 | MS.gene053431:CDS | 35.0% | |
| TTTCAGATGATTCCGTTGAA+AGG | - | chr1.4:28983631-28983650 | MS.gene053431:CDS | 35.0% | |
| AGAGAGGTAGGGAAAAGAAA+AGG | - | chr1.4:28983580-28983599 | MS.gene053431:CDS | 40.0% | |
| AGAGCTATTGCTAAAAGGTC+TGG | - | chr1.4:28983465-28983484 | MS.gene053431:CDS | 40.0% | |
| CAAGAAAAGGAAGAGTAGGA+AGG | - | chr1.4:28983731-28983750 | MS.gene053431:CDS | 40.0% | |
| GACCGAAAGAGAAAAAAGAG+AGG | - | chr1.4:28983564-28983583 | MS.gene053431:CDS | 40.0% | |
| GAGCTATTGCTAAAAGGTCT+GGG | - | chr1.4:28983466-28983485 | MS.gene053431:CDS | 40.0% | |
| GCATATGCATTATCTGCATC+GGG | + | chr1.4:28983144-28983163 | None:intergenic | 40.0% | |
| GCATCCTTGTCATCCTTATT+AGG | + | chr1.4:28983096-28983115 | None:intergenic | 40.0% | |
| GGATATGATGGTTCAAGGAA+GGG | - | chr1.4:28983876-28983895 | MS.gene053431:CDS | 40.0% | |
| GGCATATGCATTATCTGCAT+CGG | + | chr1.4:28983145-28983164 | None:intergenic | 40.0% | |
| TCATCAACTGACAGTGATTC+GGG | - | chr1.4:28983849-28983868 | MS.gene053431:CDS | 40.0% | |
| TGACCCTTATGCACCTAATA+AGG | - | chr1.4:28983080-28983099 | MS.gene053431:CDS | 40.0% | |
| TGCACCTAATAAGGATGACA+AGG | - | chr1.4:28983089-28983108 | MS.gene053431:CDS | 40.0% | |
| TGGATATGATGGTTCAAGGA+AGG | - | chr1.4:28983875-28983894 | MS.gene053431:CDS | 40.0% | |
| TGTTCTTGCACTGAAACTTG+AGG | + | chr1.4:28983260-28983279 | None:intergenic | 40.0% | |
| TTTGATGCAATGCAGTCACT+GGG | - | chr1.4:28983315-28983334 | MS.gene053431:CDS | 40.0% | |
| ! | AATGGATAGGTTGAAGGGAA+GGG | - | chr1.4:28983347-28983366 | MS.gene053431:CDS | 40.0% |
| ! | GTTCGAATGGATAGGTTGAA+GGG | - | chr1.4:28983342-28983361 | MS.gene053431:CDS | 40.0% |
| ! | TTTTGATGCAATGCAGTCAC+TGG | - | chr1.4:28983314-28983333 | MS.gene053431:CDS | 40.0% |
| !! | AAAGGAGTGTTACGACTAAG+AGG | - | chr1.4:28983598-28983617 | MS.gene053431:CDS | 40.0% |
| !! | AAGGAGTGTTACGACTAAGA+GGG | - | chr1.4:28983599-28983618 | MS.gene053431:CDS | 40.0% |
| !! | GTGATGGATATGATGGTTCA+AGG | - | chr1.4:28983871-28983890 | MS.gene053431:CDS | 40.0% |
| !! | TTCTGATTCTGAAACATCCG+AGG | - | chr1.4:28983785-28983804 | MS.gene053431:CDS | 40.0% |
| AATGCATATGCCAGCTTCCA+AGG | - | chr1.4:28983153-28983172 | MS.gene053431:CDS | 45.0% | |
| ATGATGGTTCAAGGAAGGGT+AGG | - | chr1.4:28983880-28983899 | MS.gene053431:CDS | 45.0% | |
| ATGATTCCGTTGAAAGGAGG+AGG | - | chr1.4:28983637-28983656 | MS.gene053431:CDS | 45.0% | |
| CAAAGATGACAAGGAGGAGA+AGG | - | chr1.4:28983290-28983309 | MS.gene053431:CDS | 45.0% | |
| CAATGTTGAGAGCTCAGAAG+AGG | - | chr1.4:28983392-28983411 | MS.gene053431:CDS | 45.0% | |
| CAGATGATTCCGTTGAAAGG+AGG | - | chr1.4:28983634-28983653 | MS.gene053431:CDS | 45.0% | |
| CTCAAAGTCAGCCAAATGCA+GGG | - | chr1.4:28983118-28983137 | MS.gene053431:CDS | 45.0% | |
| GAGGAGGAGGAAGAAAAAGA+GGG | - | chr1.4:28983653-28983672 | MS.gene053431:CDS | 45.0% | |
| GGACACATCCACTTCAGAAT+TGG | + | chr1.4:28983202-28983221 | None:intergenic | 45.0% | |
| GGCACAAGAAAAGGAAGAGT+AGG | - | chr1.4:28983727-28983746 | MS.gene053431:CDS | 45.0% | |
| GGCATAAGCGAAAAAGCAAG+AGG | - | chr1.4:28983820-28983839 | MS.gene053431:CDS | 45.0% | |
| TAGCAAGCTGTAGAAGTCCT+TGG | + | chr1.4:28983173-28983192 | None:intergenic | 45.0% | |
| TCTCAAAGTCAGCCAAATGC+AGG | - | chr1.4:28983117-28983136 | MS.gene053431:CDS | 45.0% | |
| TGATGGTTCAAGGAAGGGTA+GGG | - | chr1.4:28983881-28983900 | MS.gene053431:CDS | 45.0% | |
| TGCATAAGGGTCATAGCCAA+TGG | + | chr1.4:28983073-28983092 | None:intergenic | 45.0% | |
| TTGATGCAATGCAGTCACTG+GGG | - | chr1.4:28983316-28983335 | MS.gene053431:CDS | 45.0% | |
| ! | GAATGGATAGGTTGAAGGGA+AGG | - | chr1.4:28983346-28983365 | MS.gene053431:CDS | 45.0% |
| ! | GGTTCGAATGGATAGGTTGA+AGG | - | chr1.4:28983341-28983360 | MS.gene053431:CDS | 45.0% |
| !! | GATTCGGGTGATGGATATGA+TGG | - | chr1.4:28983864-28983883 | MS.gene053431:CDS | 45.0% |
| AAGGGCTGAGAAGGTGGATA+AGG | - | chr1.4:28983365-28983384 | MS.gene053431:CDS | 50.0% | |
| ACACTTCTTGCAAGCTCCAC+GGG | + | chr1.4:28983223-28983242 | None:intergenic | 50.0% | |
| AGGGCTGAGAAGGTGGATAA+GGG | - | chr1.4:28983366-28983385 | MS.gene053431:CDS | 50.0% | |
| ATGCCGCGAAGTAGAATCCT+CGG | + | chr1.4:28983805-28983824 | None:intergenic | 50.0% | |
| ATTCCGTTGAAAGGAGGAGG+AGG | - | chr1.4:28983640-28983659 | MS.gene053431:CDS | 50.0% | |
| CACACTTCTTGCAAGCTCCA+CGG | + | chr1.4:28983224-28983243 | None:intergenic | 50.0% | |
| CATCCGAGGATTCTACTTCG+CGG | - | chr1.4:28983799-28983818 | MS.gene053431:CDS | 50.0% | |
| CCATATGCCATGGGTTTGGA+GGG | + | chr1.4:28983043-28983062 | None:intergenic | 50.0% | |
| CTGTAGAAGTCCTTGGAAGC+TGG | + | chr1.4:28983166-28983185 | None:intergenic | 50.0% | |
| CTTCCTCCTCCTCCTTTCAA+CGG | + | chr1.4:28983646-28983665 | None:intergenic | 50.0% | |
| GGAAGAGTAGGAAGGAGAAG+AGG | - | chr1.4:28983739-28983758 | MS.gene053431:CDS | 50.0% | |
| GGAGGAGGAGGAAGAAAAAG+AGG | - | chr1.4:28983652-28983671 | MS.gene053431:CDS | 50.0% | |
| GTAGGAAGGAGAAGAGGAGA+AGG | - | chr1.4:28983745-28983764 | MS.gene053431:CDS | 50.0% | |
| TCTGCCATATGCCATGGGTT+TGG | + | chr1.4:28983047-28983066 | None:intergenic | 50.0% | |
| TGTTGAGAGCTCAGAAGAGG+AGG | - | chr1.4:28983395-28983414 | MS.gene053431:CDS | 50.0% | |
| ! | ACTGACAGTGATTCGGGTGA+TGG | - | chr1.4:28983855-28983874 | MS.gene053431:CDS | 50.0% |
| ! | GAAACTTGAGGTGCCCAACA+CGG | + | chr1.4:28983248-28983267 | None:intergenic | 50.0% |
| ! | GGAAGAAAAAGAGGGAGCAC+AGG | - | chr1.4:28983661-28983680 | MS.gene053431:CDS | 50.0% |
| !! | TGGGGTTGGTTCGAATGGAT+AGG | - | chr1.4:28983334-28983353 | MS.gene053431:CDS | 50.0% |
| AAGAGGAAGAGACGCCACCA+TGG | - | chr1.4:28983921-28983940 | MS.gene053431:CDS | 55.0% | |
| CCCTCCAAACCCATGGCATA+TGG | - | chr1.4:28983040-28983059 | MS.gene053431:CDS | 55.0% | |
| CGTGGAGCTTGCAAGAAGTG+TGG | - | chr1.4:28983222-28983241 | MS.gene053431:CDS | 55.0% | |
| CTGTGAACCCTGTTGTTCGC+AGG | + | chr1.4:28983012-28983031 | None:intergenic | 55.0% | |
| GCCATATGCCATGGGTTTGG+AGG | + | chr1.4:28983044-28983063 | None:intergenic | 55.0% | |
| GGCACTCTGCCATATGCCAT+GGG | + | chr1.4:28983052-28983071 | None:intergenic | 55.0% | |
| GTTGAAGGGAAGGGCTGAGA+AGG | - | chr1.4:28983356-28983375 | MS.gene053431:CDS | 55.0% | |
| TCGCATGCCTGCGAACAACA+GGG | - | chr1.4:28983002-28983021 | MS.gene053431:CDS | 55.0% | |
| TGCAATGCAGTCACTGGGGT+TGG | - | chr1.4:28983320-28983339 | MS.gene053431:CDS | 55.0% | |
| TGGCACTCTGCCATATGCCA+TGG | + | chr1.4:28983053-28983072 | None:intergenic | 55.0% | |
| TTCGCATGCCTGCGAACAAC+AGG | - | chr1.4:28983001-28983020 | MS.gene053431:CDS | 55.0% | |
| ! | GCAAGAAGTGTGGCCGTGTT+GGG | - | chr1.4:28983232-28983251 | MS.gene053431:CDS | 55.0% |
| ! | GGCATATGGCAGAGTGCCAT+TGG | - | chr1.4:28983054-28983073 | MS.gene053431:CDS | 55.0% |
| ! | TCTGAAGTGGATGTGTCCCG+TGG | - | chr1.4:28983204-28983223 | MS.gene053431:CDS | 55.0% |
| ! | TGCAAGAAGTGTGGCCGTGT+TGG | - | chr1.4:28983231-28983250 | MS.gene053431:CDS | 55.0% |
| !! | GTCACTGGGGTTGGTTCGAA+TGG | - | chr1.4:28983329-28983348 | MS.gene053431:CDS | 55.0% |
| AGTGCAGCCCTCCAAACCCA+TGG | - | chr1.4:28983033-28983052 | MS.gene053431:CDS | 60.0% | |
| CGAACCCTACCTGCTGTAGC+CGG | + | chr1.4:28982985-28983004 | None:intergenic | 60.0% | |
| GAAGGGAAGGGCTGAGAAGG+TGG | - | chr1.4:28983359-28983378 | MS.gene053431:CDS | 60.0% | |
| GGAGCACAGGAGAAGCAGGA+GGG | - | chr1.4:28983674-28983693 | MS.gene053431:CDS | 60.0% | |
| TCTGCATCGGGCCCTGCATT+TGG | + | chr1.4:28983132-28983151 | None:intergenic | 60.0% | |
| ! | AGAGGGAGCACAGGAGAAGC+AGG | - | chr1.4:28983670-28983689 | MS.gene053431:CDS | 60.0% |
| ! | GGGAGCACAGGAGAAGCAGG+AGG | - | chr1.4:28983673-28983692 | MS.gene053431:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 28982979 | 28983956 | 28982979 | ID=MS.gene053431 |
| chr1.4 | mRNA | 28982979 | 28983956 | 28982979 | ID=MS.gene053431.t1;Parent=MS.gene053431 |
| chr1.4 | exon | 28982979 | 28983956 | 28982979 | ID=MS.gene053431.t1.exon1;Parent=MS.gene053431.t1 |
| chr1.4 | CDS | 28982979 | 28983956 | 28982979 | ID=cds.MS.gene053431.t1;Parent=MS.gene053431.t1 |
| Gene Sequence |
| Protein sequence |
