Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067427.t1 | XP_003626273.1 | 84.8 | 230 | 7 | 1 | 10 | 211 | 169 | 398 | 3.10E-109 | 404.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067427.t1 | P58905 | 69.1 | 230 | 42 | 2 | 10 | 211 | 165 | 393 | 9.0e-89 | 327.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067427.t1 | G7KYM3 | 84.8 | 230 | 7 | 1 | 10 | 211 | 169 | 398 | 2.3e-109 | 404.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene067427 | 0.815346 | 9.69E-52 | -1.69E-46 |
| MS.gene051613 | MS.gene067427 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene067427 | 0.802116 | 6.54E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene067427 | 0.815919 | 7.22E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene067427 | 0.800389 | 1.47E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene067427 | 0.808305 | 3.31E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene067427 | 0.807203 | 5.67E-50 | -1.69E-46 |
| MS.gene055694 | MS.gene067427 | 0.805956 | 1.04E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene067427 | 0.813336 | 2.70E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene067427 | -0.802874 | 4.56E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067427.t1 | MTR_7g113340 | 84.052 | 232 | 9 | 1 | 8 | 211 | 167 | 398 | 8.58e-136 | 389 |
| MS.gene067427.t1 | MTR_7g098930 | 78.879 | 232 | 21 | 1 | 8 | 211 | 167 | 398 | 3.32e-128 | 370 |
| MS.gene067427.t1 | MTR_1g045550 | 67.532 | 231 | 48 | 1 | 8 | 211 | 168 | 398 | 5.69e-107 | 317 |
| MS.gene067427.t1 | MTR_1g079760 | 64.407 | 236 | 52 | 2 | 8 | 211 | 167 | 402 | 9.58e-102 | 304 |
| MS.gene067427.t1 | MTR_3g463730 | 59.052 | 232 | 59 | 3 | 10 | 210 | 135 | 361 | 2.32e-90 | 273 |
| MS.gene067427.t1 | MTR_7g115050 | 30.415 | 217 | 119 | 8 | 9 | 205 | 150 | 354 | 9.49e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067427.t1 | AT4G28700 | 66.094 | 233 | 49 | 2 | 8 | 210 | 171 | 403 | 5.76e-104 | 309 |
| MS.gene067427.t1 | AT1G64780 | 65.236 | 233 | 52 | 2 | 8 | 211 | 175 | 407 | 2.90e-103 | 307 |
| MS.gene067427.t1 | AT4G13510 | 64.224 | 232 | 55 | 2 | 8 | 211 | 162 | 393 | 6.98e-103 | 306 |
| MS.gene067427.t1 | AT3G24290 | 64.502 | 231 | 55 | 1 | 8 | 211 | 166 | 396 | 2.44e-101 | 302 |
| MS.gene067427.t1 | AT3G24300 | 61.638 | 232 | 61 | 2 | 8 | 211 | 166 | 397 | 3.15e-96 | 289 |
Find 43 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGTTGCTCATTGGTTT+TGG | 0.250219 | 2.4:+1491240 | MS.gene067427:CDS |
| TTCATGGTGGTTGTGGTACT+TGG | 0.252134 | 2.4:+1491839 | MS.gene067427:CDS |
| CTTGAAGTTGCTCAACTTCA+TGG | 0.276059 | 2.4:+1491823 | MS.gene067427:CDS |
| GTACCACTATGTCCTCTAAT+TGG | 0.291911 | 2.4:-1491437 | None:intergenic |
| CATTTAGTTGGTGTTGTTGC+TGG | 0.324395 | 2.4:+1491350 | MS.gene067427:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 2.4:+1491553 | MS.gene067427:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.334719 | 2.4:+1491613 | MS.gene067427:CDS |
| TGATCAAATCTACCAATTCT+TGG | 0.336025 | 2.4:-1491398 | None:intergenic |
| TTGTGGATTTGTTGCTGCTT+GGG | 0.357633 | 2.4:+1491750 | MS.gene067427:CDS |
| TCATGGTGGTTGTGGTACTT+GGG | 0.382463 | 2.4:+1491840 | MS.gene067427:CDS |
| CCATGGGCTGCAATTATTTG+TGG | 0.385626 | 2.4:+1491733 | MS.gene067427:CDS |
| GGTGTTCTGTTGTGGATCCA+TGG | 0.413692 | 2.4:+1491716 | MS.gene067427:CDS |
| AAATTACCTACGAAACTGTT+AGG | 0.415788 | 2.4:-1490106 | None:intergenic |
| TTTGTGGATTTGTTGCTGCT+TGG | 0.421882 | 2.4:+1491749 | MS.gene067427:CDS |
| TTTATTGAAGGACCAAGAAT+TGG | 0.431351 | 2.4:+1491386 | MS.gene067427:CDS |
| GGTAAAAGTGTTCCAATTAG+AGG | 0.432180 | 2.4:+1491425 | MS.gene067427:CDS |
| TTTGGTAAACGTATGCAAAC+AGG | 0.433237 | 2.4:+1491631 | MS.gene067427:CDS |
| TTTATCCAACTGTTGCTCAT+TGG | 0.435136 | 2.4:+1491234 | MS.gene067427:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 2.4:+1491554 | MS.gene067427:CDS |
| AGTGAAAGTGGTCATTACTA+TGG | 0.447074 | 2.4:+1491535 | MS.gene067427:CDS |
| AACGTATGCAAACAGGTCAT+TGG | 0.462679 | 2.4:+1491638 | MS.gene067427:CDS |
| GCTGTCACAACTACATTGGC+TGG | 0.468245 | 2.4:+1491583 | MS.gene067427:CDS |
| GCTCAACTTCATGGTGGTTG+TGG | 0.476038 | 2.4:+1491832 | MS.gene067427:CDS |
| AACTGCAGGGTGTTCTGTTG+TGG | 0.482968 | 2.4:+1491708 | MS.gene067427:CDS |
| GTATGTAATGGTTTACTTGG+TGG | 0.490400 | 2.4:+1491673 | MS.gene067427:CDS |
| GTGAAAGCTTATAGTGAAAG+TGG | 0.496693 | 2.4:+1491523 | MS.gene067427:intron |
| GATGTATGTAATGGTTTACT+TGG | 0.503072 | 2.4:+1491670 | MS.gene067427:CDS |
| GTGGTCATTACTATGGTCAA+TGG | 0.511989 | 2.4:+1491542 | MS.gene067427:CDS |
| ATGGTTGGGGTAGTCCAGTT+CGG | 0.517957 | 2.4:+1491270 | MS.gene067427:CDS |
| CATGGTGGTTGTGGTACTTG+GGG | 0.523447 | 2.4:+1491841 | MS.gene067427:CDS |
| GTGTTCTGTTGTGGATCCAT+GGG | 0.527050 | 2.4:+1491717 | MS.gene067427:CDS |
| AGTGTTAGTGATGTATGTAA+TGG | 0.532742 | 2.4:+1491661 | MS.gene067427:CDS |
| CCACAAATAATTGCAGCCCA+TGG | 0.565527 | 2.4:-1491733 | None:intergenic |
| ATGGTGGTTGTGGTACTTGG+GGG | 0.572938 | 2.4:+1491842 | MS.gene067427:CDS |
| ATTGGTAGATTTGATCATGA+GGG | 0.582391 | 2.4:+1491404 | MS.gene067427:CDS |
| CAAAACCAATGAGCAACAGT+TGG | 0.583861 | 2.4:-1491239 | None:intergenic |
| AATTGGTAGATTTGATCATG+AGG | 0.587107 | 2.4:+1491403 | MS.gene067427:CDS |
| TGAAGTTGAGCAACTTCAAG+AGG | 0.587522 | 2.4:-1491820 | None:intergenic |
| GACAGCTGTCACAACTACAT+TGG | 0.613672 | 2.4:+1491579 | MS.gene067427:CDS |
| CTCAGTCCTAACAGTTTCGT+AGG | 0.617776 | 2.4:+1490100 | MS.gene067427:CDS |
| GAAGTTGCTCAACTTCATGG+TGG | 0.640127 | 2.4:+1491826 | MS.gene067427:CDS |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 2.4:+1491557 | MS.gene067427:CDS |
| GTTCCAATTAGAGGACATAG+TGG | 0.643396 | 2.4:+1491434 | MS.gene067427:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAACAAAAAAAATATTAA+CGG | - | chr2.4:1490151-1490170 | None:intergenic | 10.0% |
| !! | AGTAAAAAATTGTATTTATA+AGG | - | chr2.4:1490848-1490867 | None:intergenic | 10.0% |
| !! | ATATTTCTTATATTTAATCA+AGG | - | chr2.4:1490717-1490736 | None:intergenic | 10.0% |
| !!! | TAATACATATTGATAATAAT+TGG | - | chr2.4:1490594-1490613 | None:intergenic | 10.0% |
| !! | AAATTAACAACTAAAACTAT+CGG | - | chr2.4:1490299-1490318 | None:intergenic | 15.0% |
| !! | CAAATGTAAATATTTATCTA+AGG | - | chr2.4:1490801-1490820 | None:intergenic | 15.0% |
| !! | AAAAGATAAAAATTGAAGCA+TGG | - | chr2.4:1490453-1490472 | None:intergenic | 20.0% |
| !! | CAATACTTCAATCAAATATA+TGG | + | chr2.4:1490394-1490413 | MS.gene067427:intron | 20.0% |
| !! | TTTAATCAAGGCAAAAAAAT+AGG | - | chr2.4:1490705-1490724 | None:intergenic | 20.0% |
| !!! | TTATGAGAACTTTTTTACTT+TGG | + | chr2.4:1491468-1491487 | MS.gene067427:intron | 20.0% |
| ! | AAAAGACTAATGTAAAAAGC+GGG | - | chr2.4:1490946-1490965 | None:intergenic | 25.0% |
| ! | ACAATATTAAGAAAAGAACC+AGG | - | chr2.4:1491505-1491524 | None:intergenic | 25.0% |
| ! | ACTAAAAAATTCACTGGAAA+GGG | - | chr2.4:1490478-1490497 | None:intergenic | 25.0% |
| ! | CAAAAGACTAATGTAAAAAG+CGG | - | chr2.4:1490947-1490966 | None:intergenic | 25.0% |
| ! | CAATATTAAGAAAAGAACCA+GGG | - | chr2.4:1491504-1491523 | None:intergenic | 25.0% |
| ! | CACATAAATTCACTTCAAAT+AGG | - | chr2.4:1490670-1490689 | None:intergenic | 25.0% |
| ! | CATAAAATGACTACTATTTG+TGG | - | chr2.4:1490636-1490655 | None:intergenic | 25.0% |
| !! | GTAAGAAATATTTTACGACA+TGG | + | chr2.4:1491062-1491081 | MS.gene067427:intron | 25.0% |
| !!! | AGAACTTTTTTACTTTGGTT+TGG | + | chr2.4:1491473-1491492 | MS.gene067427:intron | 25.0% |
| !!! | ATTTATTCGTCGTTTTTAAC+AGG | + | chr2.4:1491206-1491225 | MS.gene067427:intron | 25.0% |
| !!! | GATTGATTTGTTAGTTTGAT+TGG | + | chr2.4:1490257-1490276 | MS.gene067427:intron | 25.0% |
| !!! | TTTGTTCTTTGTTGATTTCT+TGG | + | chr2.4:1490162-1490181 | MS.gene067427:intron | 25.0% |
| AAAGACTAATGTAAAAAGCG+GGG | - | chr2.4:1490945-1490964 | None:intergenic | 30.0% | |
| AAATTACCTACGAAACTGTT+AGG | - | chr2.4:1490109-1490128 | None:intergenic | 30.0% | |
| AATTGGTAGATTTGATCATG+AGG | + | chr2.4:1491403-1491422 | MS.gene067427:CDS | 30.0% | |
| ACTAAAACTATCGGAAAAAC+AGG | - | chr2.4:1490290-1490309 | None:intergenic | 30.0% | |
| AGTGTTAGTGATGTATGTAA+TGG | + | chr2.4:1491661-1491680 | MS.gene067427:CDS | 30.0% | |
| ATTGGTAGATTTGATCATGA+GGG | + | chr2.4:1491404-1491423 | MS.gene067427:CDS | 30.0% | |
| CAATCACAAATATTGTGTTC+AGG | - | chr2.4:1490242-1490261 | None:intergenic | 30.0% | |
| CACTAAAAAATTCACTGGAA+AGG | - | chr2.4:1490479-1490498 | None:intergenic | 30.0% | |
| CTAAAACTATCGGAAAAACA+GGG | - | chr2.4:1490289-1490308 | None:intergenic | 30.0% | |
| GATGTATGTAATGGTTTACT+TGG | + | chr2.4:1491670-1491689 | MS.gene067427:CDS | 30.0% | |
| TAAAACTATCGGAAAAACAG+GGG | - | chr2.4:1490288-1490307 | None:intergenic | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr2.4:1491401-1491420 | None:intergenic | 30.0% | |
| TTTATTGAAGGACCAAGAAT+TGG | + | chr2.4:1491386-1491405 | MS.gene067427:CDS | 30.0% | |
| ! | AAGAGTACATATTCAGCAAA+AGG | - | chr2.4:1491003-1491022 | None:intergenic | 30.0% |
| ! | TAGCTTTCTGAAAAGAAATG+TGG | - | chr2.4:1491162-1491181 | None:intergenic | 30.0% |
| ! | TCACTTGCTTGAAATCTTTT+AGG | + | chr2.4:1491040-1491059 | MS.gene067427:intron | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr2.4:1491296-1491315 | MS.gene067427:CDS | 30.0% |
| !!! | CTTTTTTACTTTGGTTTGGT+TGG | + | chr2.4:1491477-1491496 | MS.gene067427:intron | 30.0% |
| !!! | TGTGGTTTTGTTCATTTAGT+TGG | + | chr2.4:1491338-1491357 | MS.gene067427:CDS | 30.0% |
| AAAACTATCGGAAAAACAGG+GGG | - | chr2.4:1490287-1490306 | None:intergenic | 35.0% | |
| AGTGAAAGTGGTCATTACTA+TGG | + | chr2.4:1491535-1491554 | MS.gene067427:CDS | 35.0% | |
| CTGTGCACTAAAAAATTCAC+TGG | - | chr2.4:1490484-1490503 | None:intergenic | 35.0% | |
| GTATGTAATGGTTTACTTGG+TGG | + | chr2.4:1491673-1491692 | MS.gene067427:CDS | 35.0% | |
| GTGAAAGCTTATAGTGAAAG+TGG | + | chr2.4:1491523-1491542 | MS.gene067427:intron | 35.0% | |
| TTAACCATCTGCATATCATG+TGG | + | chr2.4:1490752-1490771 | MS.gene067427:intron | 35.0% | |
| TTTATCCAACTGTTGCTCAT+TGG | + | chr2.4:1491234-1491253 | MS.gene067427:CDS | 35.0% | |
| TTTGGTAAACGTATGCAAAC+AGG | + | chr2.4:1491631-1491650 | MS.gene067427:CDS | 35.0% | |
| ! | AAAAGATTTTCAGACCGAAC+TGG | - | chr2.4:1491287-1491306 | None:intergenic | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr2.4:1491290-1491309 | MS.gene067427:CDS | 35.0% |
| !! | CTGGATTTGGTGAACAAAAA+GGG | - | chr2.4:1490197-1490216 | None:intergenic | 35.0% |
| !! | GGTAAAAGTGTTCCAATTAG+AGG | + | chr2.4:1491425-1491444 | MS.gene067427:CDS | 35.0% |
| !! | TCTGGATTTGGTGAACAAAA+AGG | - | chr2.4:1490198-1490217 | None:intergenic | 35.0% |
| !!! | GTTATTGATTTTGCTGGTTG+TGG | + | chr2.4:1491320-1491339 | MS.gene067427:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr2.4:1491314-1491333 | MS.gene067427:CDS | 35.0% |
| !!! | TTTTGGGGTGCTTTTATTGA+AGG | + | chr2.4:1491374-1491393 | MS.gene067427:CDS | 35.0% |
| AACGTATGCAAACAGGTCAT+TGG | + | chr2.4:1491638-1491657 | MS.gene067427:CDS | 40.0% | |
| CAAAACCAATGAGCAACAGT+TGG | - | chr2.4:1491242-1491261 | None:intergenic | 40.0% | |
| CTTGAAGTTGCTCAACTTCA+TGG | + | chr2.4:1491823-1491842 | MS.gene067427:CDS | 40.0% | |
| GTACCACTATGTCCTCTAAT+TGG | - | chr2.4:1491440-1491459 | None:intergenic | 40.0% | |
| GTGGTCATTACTATGGTCAA+TGG | + | chr2.4:1491542-1491561 | MS.gene067427:CDS | 40.0% | |
| GTTCCAATTAGAGGACATAG+TGG | + | chr2.4:1491434-1491453 | MS.gene067427:CDS | 40.0% | |
| TGAAGTTGAGCAACTTCAAG+AGG | - | chr2.4:1491823-1491842 | None:intergenic | 40.0% | |
| TTTGCCACATGATATGCAGA+TGG | - | chr2.4:1490759-1490778 | None:intergenic | 40.0% | |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr2.4:1491554-1491573 | MS.gene067427:CDS | 40.0% |
| ! | GTTTTGCTGCTATAACTGCA+GGG | + | chr2.4:1491695-1491714 | MS.gene067427:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr2.4:1491553-1491572 | MS.gene067427:CDS | 40.0% |
| ! | TTTTGGTCTGCTAATGGTTG+GGG | + | chr2.4:1491257-1491276 | MS.gene067427:CDS | 40.0% |
| !! | CATTTAGTTGGTGTTGTTGC+TGG | + | chr2.4:1491350-1491369 | MS.gene067427:CDS | 40.0% |
| !! | GTTGCTGCTTGGGTTTTAAT+TGG | + | chr2.4:1491760-1491779 | MS.gene067427:CDS | 40.0% |
| !! | GTTTTGGTCTGCTAATGGTT+GGG | + | chr2.4:1491256-1491275 | MS.gene067427:CDS | 40.0% |
| !! | TTGTGGATTTGTTGCTGCTT+GGG | + | chr2.4:1491750-1491769 | MS.gene067427:CDS | 40.0% |
| !! | TTTGTGGATTTGTTGCTGCT+TGG | + | chr2.4:1491749-1491768 | MS.gene067427:CDS | 40.0% |
| !!! | CAACTGTTGCTCATTGGTTT+TGG | + | chr2.4:1491240-1491259 | MS.gene067427:CDS | 40.0% |
| !!! | CATTGGTTTTGGTCTGCTAA+TGG | + | chr2.4:1491251-1491270 | MS.gene067427:CDS | 40.0% |
| !!! | TGGTGTTGTTGCTGGTTTTT+GGG | + | chr2.4:1491358-1491377 | MS.gene067427:CDS | 40.0% |
| !!! | TTGGTGTTGTTGCTGGTTTT+TGG | + | chr2.4:1491357-1491376 | MS.gene067427:CDS | 40.0% |
| CCACAAATAATTGCAGCCCA+TGG | - | chr2.4:1491736-1491755 | None:intergenic | 45.0% | |
| CTCAGTCCTAACAGTTTCGT+AGG | + | chr2.4:1490100-1490119 | MS.gene067427:CDS | 45.0% | |
| GAAGTTGCTCAACTTCATGG+TGG | + | chr2.4:1491826-1491845 | MS.gene067427:CDS | 45.0% | |
| GACAGCTGTCACAACTACAT+TGG | + | chr2.4:1491579-1491598 | MS.gene067427:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr2.4:1491613-1491632 | MS.gene067427:CDS | 45.0% | |
| GTGTTCTGTTGTGGATCCAT+GGG | + | chr2.4:1491717-1491736 | MS.gene067427:CDS | 45.0% | |
| TCATGGTGGTTGTGGTACTT+GGG | + | chr2.4:1491840-1491859 | MS.gene067427:CDS | 45.0% | |
| TTCATGGTGGTTGTGGTACT+TGG | + | chr2.4:1491839-1491858 | MS.gene067427:CDS | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+TGG | + | chr2.4:1491733-1491752 | MS.gene067427:CDS | 45.0% |
| ! | GCATTTCTGCCCTGTGTTTT+TGG | - | chr2.4:1490898-1490917 | None:intergenic | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr2.4:1491694-1491713 | MS.gene067427:CDS | 45.0% |
| !! | CAGACTTGCAGTTCTGGATT+TGG | - | chr2.4:1490210-1490229 | None:intergenic | 45.0% |
| !! | GGTTTTGGTCTGCTAATGGT+TGG | + | chr2.4:1491255-1491274 | MS.gene067427:CDS | 45.0% |
| !!! | GGTGTTGTTGCTGGTTTTTG+GGG | + | chr2.4:1491359-1491378 | MS.gene067427:CDS | 45.0% |
| !!! | TTTCTGCCCTGTGTTTTTGG+AGG | - | chr2.4:1490895-1490914 | None:intergenic | 45.0% |
| AGTCCCTCCTCCAAAAACAC+AGG | + | chr2.4:1490885-1490904 | MS.gene067427:intron | 50.0% | |
| ATGGTGGTTGTGGTACTTGG+GGG | + | chr2.4:1491842-1491861 | MS.gene067427:CDS | 50.0% | |
| ATGGTTGGGGTAGTCCAGTT+CGG | + | chr2.4:1491270-1491289 | MS.gene067427:CDS | 50.0% | |
| CATGGTGGTTGTGGTACTTG+GGG | + | chr2.4:1491841-1491860 | MS.gene067427:CDS | 50.0% | |
| GCGGGGCATATATGCAGATA+TGG | - | chr2.4:1490928-1490947 | None:intergenic | 50.0% | |
| GCTCAACTTCATGGTGGTTG+TGG | + | chr2.4:1491832-1491851 | MS.gene067427:CDS | 50.0% | |
| GCTGTCACAACTACATTGGC+TGG | + | chr2.4:1491583-1491602 | MS.gene067427:CDS | 50.0% | |
| GGTGTTCTGTTGTGGATCCA+TGG | + | chr2.4:1491716-1491735 | MS.gene067427:CDS | 50.0% | |
| GTCCCTCCTCCAAAAACACA+GGG | + | chr2.4:1490886-1490905 | MS.gene067427:intron | 50.0% | |
| ! | AACTGCAGGGTGTTCTGTTG+TGG | + | chr2.4:1491708-1491727 | MS.gene067427:CDS | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr2.4:1491557-1491576 | MS.gene067427:CDS | 50.0% |
| !! | ACTTTGGTTTGGTTGGTCCC+TGG | + | chr2.4:1491484-1491503 | MS.gene067427:intron | 50.0% |
| !!! | TGCCCTGTGTTTTTGGAGGA+GGG | - | chr2.4:1490891-1490910 | None:intergenic | 50.0% |
| ACTGCGCAGACTTGCAGTTC+TGG | - | chr2.4:1490216-1490235 | None:intergenic | 55.0% | |
| !!! | CTGCCCTGTGTTTTTGGAGG+AGG | - | chr2.4:1490892-1490911 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 1490094 | 1491909 | 1490094 | ID=MS.gene067427 |
| chr2.4 | mRNA | 1490094 | 1491909 | 1490094 | ID=MS.gene067427.t1;Parent=MS.gene067427 |
| chr2.4 | exon | 1490094 | 1490121 | 1490094 | ID=MS.gene067427.t1.exon1;Parent=MS.gene067427.t1 |
| chr2.4 | CDS | 1490094 | 1490121 | 1490094 | ID=cds.MS.gene067427.t1;Parent=MS.gene067427.t1 |
| chr2.4 | exon | 1491228 | 1491455 | 1491228 | ID=MS.gene067427.t1.exon2;Parent=MS.gene067427.t1 |
| chr2.4 | CDS | 1491228 | 1491455 | 1491228 | ID=cds.MS.gene067427.t1;Parent=MS.gene067427.t1 |
| chr2.4 | exon | 1491530 | 1491909 | 1491530 | ID=MS.gene067427.t1.exon3;Parent=MS.gene067427.t1 |
| chr2.4 | CDS | 1491530 | 1491909 | 1491530 | ID=cds.MS.gene067427.t1;Parent=MS.gene067427.t1 |
| Gene Sequence |
| Protein sequence |
