Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067492.t1 | XP_013465630.1 | 83.6 | 384 | 29 | 8 | 1 | 373 | 1 | 361 | 2.20E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067492.t1 | Q9S9M8 | 55.2 | 330 | 130 | 6 | 56 | 373 | 74 | 397 | 5.6e-94 | 345.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067492.t1 | G7ZYZ4 | 83.6 | 384 | 29 | 8 | 1 | 373 | 1 | 361 | 1.6e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene067492.t1 | TF | TUB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051955 | MS.gene067492 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene052308 | MS.gene067492 | 0.820318 | 7.31E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene067492 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene055308 | MS.gene067492 | 0.838219 | 3.28E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene067492 | 0.851664 | 7.66E-61 | -1.69E-46 |
| MS.gene055957 | MS.gene067492 | 0.803792 | 2.94E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene067492 | 0.860774 | 1.63E-63 | -1.69E-46 |
| MS.gene056528 | MS.gene067492 | 0.814578 | 1.43E-51 | -1.69E-46 |
| MS.gene05652 | MS.gene067492 | 0.811827 | 5.76E-51 | -1.69E-46 |
| MS.gene058128 | MS.gene067492 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene058853 | MS.gene067492 | 0.816409 | 5.61E-52 | -1.69E-46 |
| MS.gene060473 | MS.gene067492 | 0.840866 | 6.72E-58 | -1.69E-46 |
| MS.gene060565 | MS.gene067492 | 0.825975 | 3.50E-54 | -1.69E-46 |
| MS.gene061099 | MS.gene067492 | 0.818097 | 2.34E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067492.t1 | MTR_2g105390 | 85.417 | 384 | 22 | 8 | 1 | 373 | 1 | 361 | 0.0 | 618 |
| MS.gene067492.t1 | MTR_1g022370 | 27.698 | 278 | 138 | 12 | 147 | 371 | 154 | 421 | 9.10e-15 | 75.5 |
| MS.gene067492.t1 | MTR_2g020280 | 53.226 | 62 | 22 | 2 | 317 | 371 | 232 | 293 | 1.09e-12 | 68.2 |
| MS.gene067492.t1 | MTR_2g020280 | 53.226 | 62 | 22 | 2 | 317 | 371 | 331 | 392 | 1.66e-12 | 68.6 |
| MS.gene067492.t1 | MTR_1g088960 | 50.000 | 62 | 24 | 1 | 317 | 371 | 340 | 401 | 2.38e-12 | 68.2 |
| MS.gene067492.t1 | MTR_2g007930 | 40.909 | 110 | 44 | 5 | 277 | 371 | 323 | 426 | 4.59e-12 | 67.4 |
| MS.gene067492.t1 | MTR_5g020580 | 38.947 | 95 | 44 | 3 | 286 | 371 | 326 | 415 | 9.49e-12 | 66.2 |
| MS.gene067492.t1 | MTR_8g077195 | 36.697 | 109 | 54 | 4 | 272 | 371 | 309 | 411 | 2.49e-11 | 65.1 |
| MS.gene067492.t1 | MTR_1g098790 | 36.207 | 116 | 47 | 4 | 277 | 371 | 321 | 430 | 2.91e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067492.t1 | AT1G16070 | 55.758 | 330 | 128 | 6 | 56 | 373 | 74 | 397 | 9.19e-125 | 365 |
| MS.gene067492.t1 | AT1G16070 | 53.546 | 282 | 113 | 6 | 56 | 325 | 74 | 349 | 4.45e-95 | 288 |
| MS.gene067492.t1 | AT1G16070 | 52.466 | 223 | 88 | 6 | 56 | 266 | 74 | 290 | 4.07e-70 | 222 |
| MS.gene067492.t1 | AT2G18280 | 25.723 | 346 | 177 | 13 | 93 | 371 | 60 | 392 | 6.85e-16 | 79.0 |
| MS.gene067492.t1 | AT2G18280 | 25.723 | 346 | 177 | 13 | 93 | 371 | 60 | 392 | 6.85e-16 | 79.0 |
| MS.gene067492.t1 | AT1G47270 | 26.641 | 259 | 136 | 10 | 156 | 371 | 140 | 387 | 2.52e-12 | 68.2 |
| MS.gene067492.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 317 | 371 | 345 | 406 | 2.75e-12 | 68.2 |
| MS.gene067492.t1 | AT1G47270 | 26.641 | 259 | 136 | 10 | 156 | 371 | 164 | 411 | 2.77e-12 | 68.2 |
| MS.gene067492.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 317 | 371 | 344 | 405 | 2.84e-12 | 68.2 |
| MS.gene067492.t1 | AT2G47900 | 53.226 | 62 | 22 | 2 | 317 | 371 | 344 | 405 | 2.84e-12 | 68.2 |
| MS.gene067492.t1 | AT1G47270 | 26.641 | 259 | 136 | 10 | 156 | 371 | 165 | 412 | 3.04e-12 | 67.8 |
| MS.gene067492.t1 | AT1G25280 | 44.156 | 77 | 40 | 2 | 296 | 371 | 192 | 266 | 3.66e-12 | 66.6 |
| MS.gene067492.t1 | AT1G25280 | 44.156 | 77 | 40 | 2 | 296 | 371 | 192 | 266 | 3.66e-12 | 66.6 |
| MS.gene067492.t1 | AT1G25280 | 31.884 | 138 | 69 | 3 | 254 | 371 | 312 | 444 | 1.34e-11 | 66.2 |
| MS.gene067492.t1 | AT3G06380 | 45.902 | 61 | 27 | 1 | 317 | 371 | 227 | 287 | 5.79e-11 | 63.2 |
Find 103 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAACTCTTTGAAGATT+TGG | 0.208848 | 2.4:+330666 | MS.gene067492:CDS |
| GTTGAAAATGAGTTGGATTT+TGG | 0.248838 | 2.4:-330560 | None:intergenic |
| GTTTACTACTGCGGGGCTTA+TGG | 0.274791 | 2.4:-331164 | None:intergenic |
| GGTTCAGGTACAACACATTA+AGG | 0.279223 | 2.4:+331487 | MS.gene067492:intron |
| TTCAAACTCTTTGAAGATTT+GGG | 0.291430 | 2.4:+330667 | MS.gene067492:CDS |
| AAACTTTCAGCTCACGTTAG+AGG | 0.301321 | 2.4:+331755 | MS.gene067492:CDS |
| CCTGTACATGTTGCTATTGT+AGG | 0.305231 | 2.4:-331293 | None:intergenic |
| GGTATAAAGAGAGAAGAAAT+TGG | 0.306355 | 2.4:-330837 | None:intergenic |
| CCGGTTCAAAATACCACATT+TGG | 0.317816 | 2.4:+331124 | MS.gene067492:CDS |
| TACGACCAAGGGTTTGGTTT+TGG | 0.321955 | 2.4:-330424 | None:intergenic |
| GAGCTTGACTATAGAGATAA+AGG | 0.329596 | 2.4:+331699 | MS.gene067492:CDS |
| AGACCATTGCCTATAGATAT+TGG | 0.366407 | 2.4:+330761 | MS.gene067492:CDS |
| TTAAGGGACTGCCAATGAAT+TGG | 0.380340 | 2.4:+331504 | MS.gene067492:CDS |
| AAAATACCACATTTGGGATC+AGG | 0.391655 | 2.4:+331131 | MS.gene067492:CDS |
| TCCCACTCCGGCGCTTGTGG+TGG | 0.398163 | 2.4:-331002 | None:intergenic |
| GTGTACTTGTGTTATTGTTA+AGG | 0.401096 | 2.4:+330787 | MS.gene067492:CDS |
| ACCTCCCACTCCGGCGCTTG+TGG | 0.404570 | 2.4:-331005 | None:intergenic |
| AAAGACATAGATTGATGATT+GGG | 0.409134 | 2.4:-331344 | None:intergenic |
| AAAACATACGACCAAGGGTT+TGG | 0.409386 | 2.4:-330430 | None:intergenic |
| ATATCCTTTGACTGGTTACC+AGG | 0.411071 | 2.4:+332037 | MS.gene067492:CDS |
| GCAACAAAGCTTTGCATCAA+TGG | 0.420488 | 2.4:-332081 | None:intergenic |
| TTCCTACCCTCCCTAGCTGC+AGG | 0.422680 | 2.4:-331895 | None:intergenic |
| CTGCTGCTCCTGCTTCCTCC+TGG | 0.428096 | 2.4:+330708 | MS.gene067492:CDS |
| TGTTAAGGAACCAACTCCTC+AGG | 0.436248 | 2.4:+330802 | MS.gene067492:CDS |
| GAAAGACATAGATTGATGAT+TGG | 0.438091 | 2.4:-331345 | None:intergenic |
| TCTACATATCAAAGACTTGT+TGG | 0.438291 | 2.4:-330741 | None:intergenic |
| GTACACCTTCCAATATCTAT+AGG | 0.439094 | 2.4:-330770 | None:intergenic |
| TAAGGGACTGCCAATGAATT+GGG | 0.444518 | 2.4:+331505 | MS.gene067492:CDS |
| GTTTGCTATGATTAGGAGAA+TGG | 0.459646 | 2.4:+331860 | MS.gene067492:intron |
| CGGTTCAAAATACCACATTT+GGG | 0.463937 | 2.4:+331125 | MS.gene067492:CDS |
| GATAAAGGAAGGCCAGGACT+TGG | 0.466820 | 2.4:+331714 | MS.gene067492:CDS |
| AAGAGGTGGTTTACTACTGC+GGG | 0.474800 | 2.4:-331172 | None:intergenic |
| GGGACGGCAGAATAGGAAAC+TGG | 0.475585 | 2.4:+330972 | MS.gene067492:CDS |
| AAGGTCAGGGACGGCAGAAT+AGG | 0.479149 | 2.4:+330965 | MS.gene067492:intron |
| CCCACTCCGGCGCTTGTGGT+GGG | 0.479209 | 2.4:-331001 | None:intergenic |
| GAAGAATCAGAAGAAGGAAT+AGG | 0.486222 | 2.4:-330638 | None:intergenic |
| CTTCAAAGAGTTTGAAAAGT+GGG | 0.488487 | 2.4:-330660 | None:intergenic |
| CTACATATCAAAGACTTGTT+GGG | 0.489447 | 2.4:-330740 | None:intergenic |
| GTATAAAGAGAGAAGAAATT+GGG | 0.490055 | 2.4:-330836 | None:intergenic |
| CGTGTTTGTTGAAAATGAGT+TGG | 0.490098 | 2.4:-330567 | None:intergenic |
| ATCTGCAGATATCCTTTGAC+TGG | 0.494012 | 2.4:+332029 | MS.gene067492:intron |
| CCAACTCCTCAGGGTCTCTC+CGG | 0.498571 | 2.4:+330812 | MS.gene067492:CDS |
| AAATACCACATTTGGGATCA+GGG | 0.506568 | 2.4:+331132 | MS.gene067492:CDS |
| CCGGAGAGACCCTGAGGAGT+TGG | 0.514963 | 2.4:-330812 | None:intergenic |
| AAAGTAGACCAGGAGGAAGC+AGG | 0.520011 | 2.4:-330716 | None:intergenic |
| AAGTGGGAAGAATCAGAAGA+AGG | 0.520266 | 2.4:-330644 | None:intergenic |
| AGCAGACAATCCTGCAGCTA+GGG | 0.521878 | 2.4:+331885 | MS.gene067492:CDS |
| GGAAGCCAAACATATGCAAA+AGG | 0.524760 | 2.4:-332060 | None:intergenic |
| CCTCCTACCTTGTTATAGAG+TGG | 0.527819 | 2.4:-331569 | None:intergenic |
| TATAGAGATAAAGGAAGGCC+AGG | 0.527875 | 2.4:+331708 | MS.gene067492:CDS |
| AAGCAGACAATCCTGCAGCT+AGG | 0.533935 | 2.4:+331884 | MS.gene067492:CDS |
| CTTGTTGGGTAAAGTAGACC+AGG | 0.539180 | 2.4:-330726 | None:intergenic |
| TTTGCTATGATTAGGAGAAT+GGG | 0.539684 | 2.4:+331861 | MS.gene067492:intron |
| CAAAACCAAAACCAAACCCT+TGG | 0.542341 | 2.4:+330419 | MS.gene067492:CDS |
| ATATAATACATTACATACAT+AGG | 0.545980 | 2.4:-330858 | None:intergenic |
| CTGTGGCCCACCACAAGCGC+CGG | 0.547264 | 2.4:+330995 | MS.gene067492:CDS |
| AAGTGCATCAACTATTCTCA+AGG | 0.551216 | 2.4:+331543 | MS.gene067492:CDS |
| GTTCAGGTACAACACATTAA+GGG | 0.551230 | 2.4:+331488 | MS.gene067492:intron |
| AGCTTTGTTGCGTAGTGTAG+TGG | 0.551716 | 2.4:+332093 | MS.gene067492:CDS |
| GATCTCTGGATTCCAAGTCC+TGG | 0.553307 | 2.4:-331726 | None:intergenic |
| AAGAGAGAAGAAATTGGGAC+CGG | 0.559507 | 2.4:-330831 | None:intergenic |
| AGACAATCCTGCAGCTAGGG+AGG | 0.560928 | 2.4:+331888 | MS.gene067492:CDS |
| GTCTTTCAAGAACACCAACC+AGG | 0.561985 | 2.4:+331361 | MS.gene067492:CDS |
| CCTACAATAGCAACATGTAC+AGG | 0.562677 | 2.4:+331293 | MS.gene067492:CDS |
| ACCACAAGCGCCGGAGTGGG+AGG | 0.564951 | 2.4:+331004 | MS.gene067492:CDS |
| CCCACCACAAGCGCCGGAGT+GGG | 0.568859 | 2.4:+331001 | MS.gene067492:CDS |
| TCTTCAAAGAGTTTGAAAAG+TGG | 0.573900 | 2.4:-330661 | None:intergenic |
| GACAATCCTGCAGCTAGGGA+GGG | 0.574505 | 2.4:+331889 | MS.gene067492:CDS |
| CCAAACATATGCAAAAGGCC+TGG | 0.577415 | 2.4:-332055 | None:intergenic |
| GCCCACCACAAGCGCCGGAG+TGG | 0.582189 | 2.4:+331000 | MS.gene067492:CDS |
| ACAGTTACCGCTAACCTCAC+CGG | 0.586784 | 2.4:+331105 | MS.gene067492:CDS |
| AGGAGCAGCAGCTTCAGAGT+CGG | 0.586966 | 2.4:-330696 | None:intergenic |
| ATTTGAAAACATACGACCAA+GGG | 0.596408 | 2.4:-330435 | None:intergenic |
| GTTAAGGAACCAACTCCTCA+GGG | 0.602181 | 2.4:+330803 | MS.gene067492:CDS |
| CATTGCCTATAGATATTGGA+AGG | 0.608050 | 2.4:+330765 | MS.gene067492:CDS |
| TGAAGTGAGACCTCCCACTC+CGG | 0.610091 | 2.4:-331014 | None:intergenic |
| ACAGTAGCTCAGAATCTCAA+AGG | 0.612108 | 2.4:+331036 | MS.gene067492:CDS |
| AAGGCCTGGTAACCAGTCAA+AGG | 0.614442 | 2.4:-332041 | None:intergenic |
| TACTCAACAACAGCAAGAGG+TGG | 0.614584 | 2.4:-331186 | None:intergenic |
| GTTGGTATCAATCTCGCTGA+GGG | 0.614914 | 2.4:-330459 | None:intergenic |
| CTTCCAATATCTATAGGCAA+TGG | 0.616470 | 2.4:-330764 | None:intergenic |
| ATGAATCTAACTAACCTGGT+TGG | 0.618468 | 2.4:-331375 | None:intergenic |
| GCAGAATAGGAAACTGGCTG+TGG | 0.618843 | 2.4:+330978 | MS.gene067492:CDS |
| ATCCTGCAGCTAGGGAGGGT+AGG | 0.625245 | 2.4:+331893 | MS.gene067492:CDS |
| ATGCAGAACTGTAATGAGGA+AGG | 0.628521 | 2.4:-330602 | None:intergenic |
| TTGACTATAGAGATAAAGGA+AGG | 0.630332 | 2.4:+331703 | MS.gene067492:CDS |
| GCTTACTCAACAACAGCAAG+AGG | 0.633778 | 2.4:-331189 | None:intergenic |
| GGACTGCCAATGAATTGGGA+AGG | 0.634626 | 2.4:+331509 | MS.gene067492:CDS |
| CAAGAGGTGGTTTACTACTG+CGG | 0.635758 | 2.4:-331173 | None:intergenic |
| AGTGCATCAACTATTCTCAA+GGG | 0.640841 | 2.4:+331544 | MS.gene067492:CDS |
| GATATCCCTGATCCCAAATG+TGG | 0.643558 | 2.4:-331137 | None:intergenic |
| CAGCAGCTTCAGAGTCGGAG+TGG | 0.644616 | 2.4:-330691 | None:intergenic |
| TTGATACCAACGTTCAGCTG+AGG | 0.647442 | 2.4:+330471 | MS.gene067492:CDS |
| TATTGTAGGAAGGTCAGGGA+CGG | 0.654971 | 2.4:+330956 | MS.gene067492:intron |
| CGTTGGTATCAATCTCGCTG+AGG | 0.663356 | 2.4:-330460 | None:intergenic |
| ACTATGCCTCAGCTGAACGT+TGG | 0.664550 | 2.4:-330477 | None:intergenic |
| TTGCATGCAGAACTGTAATG+AGG | 0.667955 | 2.4:-330606 | None:intergenic |
| GATTTGAAAACATACGACCA+AGG | 0.673412 | 2.4:-330436 | None:intergenic |
| AAGGGATCCACTCTATAACA+AGG | 0.674607 | 2.4:+331562 | MS.gene067492:CDS |
| AGAGGTGGTTTACTACTGCG+GGG | 0.697959 | 2.4:-331171 | None:intergenic |
| TTGGGACCGGAGAGACCCTG+AGG | 0.711109 | 2.4:-330818 | None:intergenic |
| TTGGTATCAATCTCGCTGAG+GGG | 0.714521 | 2.4:-330458 | None:intergenic |
| GTTGGGTAAAGTAGACCAGG+AGG | 0.744497 | 2.4:-330723 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATTATTATTATTATTGT+AGG | + | chr2.4:330942-330961 | MS.gene067492:intron | 10.0% |
| !! | TATTACTAACAATAAAATTT+GGG | + | chr2.4:331465-331484 | MS.gene067492:intron | 10.0% |
| !! | TTATTACTAACAATAAAATT+TGG | + | chr2.4:331464-331483 | MS.gene067492:intron | 10.0% |
| !! | ATATAATACATTACATACAT+AGG | - | chr2.4:330861-330880 | None:intergenic | 15.0% |
| !! | ATTACTAACAATAAAATTTG+GGG | + | chr2.4:331466-331485 | MS.gene067492:intron | 15.0% |
| !! | TTAATGAAAATCAATATCAA+TGG | - | chr2.4:331640-331659 | None:intergenic | 15.0% |
| !! | TTATTATTATTATTGTAGGA+AGG | + | chr2.4:330946-330965 | MS.gene067492:intron | 15.0% |
| !! | ATACATAGAATAGAATAGAA+TGG | - | chr2.4:330893-330912 | None:intergenic | 20.0% |
| !!! | AGGAAAATCTAATTTTGTTA+TGG | + | chr2.4:331913-331932 | MS.gene067492:CDS | 20.0% |
| !!! | GTTTTTATGTTATAACAACT+CGG | + | chr2.4:331807-331826 | MS.gene067492:intron | 20.0% |
| ! | GTATAAAGAGAGAAGAAATT+GGG | - | chr2.4:330839-330858 | None:intergenic | 25.0% |
| ! | TTATAACATAAAAACCCTTC+CGG | - | chr2.4:331802-331821 | None:intergenic | 25.0% |
| !! | AAAGACATAGATTGATGATT+GGG | - | chr2.4:331347-331366 | None:intergenic | 25.0% |
| !! | TTCAAACTCTTTGAAGATTT+GGG | + | chr2.4:330667-330686 | MS.gene067492:CDS | 25.0% |
| !! | TTTCAAACTCTTTGAAGATT+TGG | + | chr2.4:330666-330685 | MS.gene067492:CDS | 25.0% |
| AATGAATTGGGAAGGAAAAA+TGG | + | chr2.4:331517-331536 | MS.gene067492:CDS | 30.0% | |
| ATCATCATCATCATCAGAAT+TGG | - | chr2.4:331070-331089 | None:intergenic | 30.0% | |
| ATTATTATTGTAGGAAGGTC+AGG | + | chr2.4:330951-330970 | MS.gene067492:intron | 30.0% | |
| ATTTGAAAACATACGACCAA+GGG | - | chr2.4:330438-330457 | None:intergenic | 30.0% | |
| CTTCAAAGAGTTTGAAAAGT+GGG | - | chr2.4:330663-330682 | None:intergenic | 30.0% | |
| GAAAATCAATATCAATGGCT+TGG | - | chr2.4:331635-331654 | None:intergenic | 30.0% | |
| GAAAATGAATCTAACTAACC+TGG | - | chr2.4:331382-331401 | None:intergenic | 30.0% | |
| GGTATAAAGAGAGAAGAAAT+TGG | - | chr2.4:330840-330859 | None:intergenic | 30.0% | |
| TATAACATAAAAACCCTTCC+GGG | - | chr2.4:331801-331820 | None:intergenic | 30.0% | |
| TCTACATATCAAAGACTTGT+TGG | - | chr2.4:330744-330763 | None:intergenic | 30.0% | |
| TCTTCAAAGAGTTTGAAAAG+TGG | - | chr2.4:330664-330683 | None:intergenic | 30.0% | |
| TTATTATTGTAGGAAGGTCA+GGG | + | chr2.4:330952-330971 | MS.gene067492:intron | 30.0% | |
| TTGACTATAGAGATAAAGGA+AGG | + | chr2.4:331703-331722 | MS.gene067492:CDS | 30.0% | |
| ! | AACAATAAAATTTGGGGTTC+AGG | + | chr2.4:331472-331491 | MS.gene067492:intron | 30.0% |
| ! | ATTTTTCCTTCCCAATTCAT+TGG | - | chr2.4:331518-331537 | None:intergenic | 30.0% |
| ! | CTACATATCAAAGACTTGTT+GGG | - | chr2.4:330743-330762 | None:intergenic | 30.0% |
| ! | GAAAGACATAGATTGATGAT+TGG | - | chr2.4:331348-331367 | None:intergenic | 30.0% |
| ! | GTGTACTTGTGTTATTGTTA+AGG | + | chr2.4:330787-330806 | MS.gene067492:CDS | 30.0% |
| ! | TAACTAGTACATCATTTTGC+AGG | + | chr2.4:331264-331283 | MS.gene067492:intron | 30.0% |
| ! | TTTGCTATGATTAGGAGAAT+GGG | + | chr2.4:331861-331880 | MS.gene067492:intron | 30.0% |
| !! | CTAATTTTGTTATGGACTAC+AGG | + | chr2.4:331921-331940 | MS.gene067492:CDS | 30.0% |
| !! | GATGATGATGATACTTTTCT+CGG | + | chr2.4:331081-331100 | MS.gene067492:CDS | 30.0% |
| !! | GATTTGTGTTTGCTATGATT+AGG | + | chr2.4:331853-331872 | MS.gene067492:intron | 30.0% |
| !! | GTTGAAAATGAGTTGGATTT+TGG | - | chr2.4:330563-330582 | None:intergenic | 30.0% |
| !! | TTTTGGAAGAGAAACAACAT+TGG | - | chr2.4:330546-330565 | None:intergenic | 30.0% |
| AAGTGCATCAACTATTCTCA+AGG | + | chr2.4:331543-331562 | MS.gene067492:CDS | 35.0% | |
| AGACCATTGCCTATAGATAT+TGG | + | chr2.4:330761-330780 | MS.gene067492:CDS | 35.0% | |
| AGTGCATCAACTATTCTCAA+GGG | + | chr2.4:331544-331563 | MS.gene067492:CDS | 35.0% | |
| ATGAATCTAACTAACCTGGT+TGG | - | chr2.4:331378-331397 | None:intergenic | 35.0% | |
| CAACAACAACAACAAGAACA+AGG | + | chr2.4:330514-330533 | MS.gene067492:CDS | 35.0% | |
| CATTGCCTATAGATATTGGA+AGG | + | chr2.4:330765-330784 | MS.gene067492:CDS | 35.0% | |
| CGGTTCAAAATACCACATTT+GGG | + | chr2.4:331125-331144 | MS.gene067492:CDS | 35.0% | |
| CTTCCAATATCTATAGGCAA+TGG | - | chr2.4:330767-330786 | None:intergenic | 35.0% | |
| GAAGAATCAGAAGAAGGAAT+AGG | - | chr2.4:330641-330660 | None:intergenic | 35.0% | |
| GAGCTTGACTATAGAGATAA+AGG | + | chr2.4:331699-331718 | MS.gene067492:CDS | 35.0% | |
| GATTTGAAAACATACGACCA+AGG | - | chr2.4:330439-330458 | None:intergenic | 35.0% | |
| GTACACCTTCCAATATCTAT+AGG | - | chr2.4:330773-330792 | None:intergenic | 35.0% | |
| GTTCAGGTACAACACATTAA+GGG | + | chr2.4:331488-331507 | MS.gene067492:intron | 35.0% | |
| TTAGTTAGCAGAGAAGAATG+AGG | - | chr2.4:331247-331266 | None:intergenic | 35.0% | |
| TTGCTTTGTACTCTTGATGA+AGG | - | chr2.4:331676-331695 | None:intergenic | 35.0% | |
| ! | AAAATACCACATTTGGGATC+AGG | + | chr2.4:331131-331150 | MS.gene067492:CDS | 35.0% |
| ! | AAATACCACATTTGGGATCA+GGG | + | chr2.4:331132-331151 | MS.gene067492:CDS | 35.0% |
| ! | ACTCATTTTCAACAAACACG+AGG | + | chr2.4:330570-330589 | MS.gene067492:CDS | 35.0% |
| ! | CGTGAGCTGAAAGTTTTTAA+CGG | - | chr2.4:331751-331770 | None:intergenic | 35.0% |
| ! | CGTGTTTGTTGAAAATGAGT+TGG | - | chr2.4:330570-330589 | None:intergenic | 35.0% |
| !! | CCAAATGTGGTATTTTGAAC+CGG | - | chr2.4:331127-331146 | None:intergenic | 35.0% |
| !! | GAAAGTTTTTAACGGATCTC+TGG | - | chr2.4:331743-331762 | None:intergenic | 35.0% |
| !! | GTTTGCTATGATTAGGAGAA+TGG | + | chr2.4:331860-331879 | MS.gene067492:intron | 35.0% |
| !!! | CTTAATGTGTTTTGAAGAGG+CGG | + | chr2.4:331975-331994 | MS.gene067492:intron | 35.0% |
| !!! | GACCTTAATGTGTTTTGAAG+AGG | + | chr2.4:331972-331991 | MS.gene067492:intron | 35.0% |
| !!! | TTAATGTGTTTTGAAGAGGC+GGG | + | chr2.4:331976-331995 | MS.gene067492:intron | 35.0% |
| AAAACATACGACCAAGGGTT+TGG | - | chr2.4:330433-330452 | None:intergenic | 40.0% | |
| AAACTTTCAGCTCACGTTAG+AGG | + | chr2.4:331755-331774 | MS.gene067492:CDS | 40.0% | |
| AAAGAAACTTCCCCTAAGTG+AGG | - | chr2.4:331597-331616 | None:intergenic | 40.0% | |
| AAGAGAGAAGAAATTGGGAC+CGG | - | chr2.4:330834-330853 | None:intergenic | 40.0% | |
| AAGGGATCCACTCTATAACA+AGG | + | chr2.4:331562-331581 | MS.gene067492:CDS | 40.0% | |
| AAGTGGGAAGAATCAGAAGA+AGG | - | chr2.4:330647-330666 | None:intergenic | 40.0% | |
| ACAGTAGCTCAGAATCTCAA+AGG | + | chr2.4:331036-331055 | MS.gene067492:CDS | 40.0% | |
| AGGTGGAGATTGAGAGATTT+AGG | - | chr2.4:331214-331233 | None:intergenic | 40.0% | |
| ATCTGCAGATATCCTTTGAC+TGG | + | chr2.4:332029-332048 | MS.gene067492:intron | 40.0% | |
| ATGCAGAACTGTAATGAGGA+AGG | - | chr2.4:330605-330624 | None:intergenic | 40.0% | |
| ATTGACAGAGGAAATGGTAC+TGG | - | chr2.4:332011-332030 | None:intergenic | 40.0% | |
| CAAAACCAAAACCAAACCCT+TGG | + | chr2.4:330419-330438 | MS.gene067492:CDS | 40.0% | |
| CCGGTTCAAAATACCACATT+TGG | + | chr2.4:331124-331143 | MS.gene067492:CDS | 40.0% | |
| CCTACAATAGCAACATGTAC+AGG | + | chr2.4:331293-331312 | MS.gene067492:CDS | 40.0% | |
| CGCCTCTTCAAAACACATTA+AGG | - | chr2.4:331977-331996 | None:intergenic | 40.0% | |
| GATCCACTCTATAACAAGGT+AGG | + | chr2.4:331566-331585 | MS.gene067492:intron | 40.0% | |
| GCAACAAAGCTTTGCATCAA+TGG | - | chr2.4:332084-332103 | None:intergenic | 40.0% | |
| GGAAGCCAAACATATGCAAA+AGG | - | chr2.4:332063-332082 | None:intergenic | 40.0% | |
| GGTTCAGGTACAACACATTA+AGG | + | chr2.4:331487-331506 | MS.gene067492:intron | 40.0% | |
| TAAATCTCTCAATCTCCACC+TGG | + | chr2.4:331213-331232 | MS.gene067492:intron | 40.0% | |
| TAAGGGACTGCCAATGAATT+GGG | + | chr2.4:331505-331524 | MS.gene067492:CDS | 40.0% | |
| TATAGAGATAAAGGAAGGCC+AGG | + | chr2.4:331708-331727 | MS.gene067492:CDS | 40.0% | |
| TTAAGGGACTGCCAATGAAT+TGG | + | chr2.4:331504-331523 | MS.gene067492:CDS | 40.0% | |
| TTGCATGCAGAACTGTAATG+AGG | - | chr2.4:330609-330628 | None:intergenic | 40.0% | |
| ! | ATATCCTTTGACTGGTTACC+AGG | + | chr2.4:332037-332056 | MS.gene067492:CDS | 40.0% |
| ! | CCTGTACATGTTGCTATTGT+AGG | - | chr2.4:331296-331315 | None:intergenic | 40.0% |
| !!! | CAAGGGTTTGGTTTTGGTTT+TGG | - | chr2.4:330421-330440 | None:intergenic | 40.0% |
| !!! | TAATGTGTTTTGAAGAGGCG+GGG | + | chr2.4:331977-331996 | MS.gene067492:intron | 40.0% |
| AAGAGGTGGTTTACTACTGC+GGG | - | chr2.4:331175-331194 | None:intergenic | 45.0% | |
| AGAGGTAACATCATTGACGC+CGG | + | chr2.4:331773-331792 | MS.gene067492:intron | 45.0% | |
| ATAAAAACCCTTCCGGGTTC+CGG | - | chr2.4:331795-331814 | None:intergenic | 45.0% | |
| CAAGAGGTGGTTTACTACTG+CGG | - | chr2.4:331176-331195 | None:intergenic | 45.0% | |
| CCAAACATATGCAAAAGGCC+TGG | - | chr2.4:332058-332077 | None:intergenic | 45.0% | |
| CCACTCTATAACAAGGTAGG+AGG | + | chr2.4:331569-331588 | MS.gene067492:intron | 45.0% | |
| CTGCAGATTGACAGAGGAAA+TGG | - | chr2.4:332017-332036 | None:intergenic | 45.0% | |
| CTTGTTGGGTAAAGTAGACC+AGG | - | chr2.4:330729-330748 | None:intergenic | 45.0% | |
| GATATCCCTGATCCCAAATG+TGG | - | chr2.4:331140-331159 | None:intergenic | 45.0% | |
| GCTTACTCAACAACAGCAAG+AGG | - | chr2.4:331192-331211 | None:intergenic | 45.0% | |
| GGATATCTGCAGATTGACAG+AGG | - | chr2.4:332023-332042 | None:intergenic | 45.0% | |
| GTCTTTCAAGAACACCAACC+AGG | + | chr2.4:331361-331380 | MS.gene067492:CDS | 45.0% | |
| GTTAAGGAACCAACTCCTCA+GGG | + | chr2.4:330803-330822 | MS.gene067492:CDS | 45.0% | |
| GTTAGCAGAGAAGAATGAGG+CGG | - | chr2.4:331244-331263 | None:intergenic | 45.0% | |
| GTTGGTATCAATCTCGCTGA+GGG | - | chr2.4:330462-330481 | None:intergenic | 45.0% | |
| TACTCAACAACAGCAAGAGG+TGG | - | chr2.4:331189-331208 | None:intergenic | 45.0% | |
| TATTGTAGGAAGGTCAGGGA+CGG | + | chr2.4:330956-330975 | MS.gene067492:intron | 45.0% | |
| TGTTAAGGAACCAACTCCTC+AGG | + | chr2.4:330802-330821 | MS.gene067492:CDS | 45.0% | |
| TTGATACCAACGTTCAGCTG+AGG | + | chr2.4:330471-330490 | MS.gene067492:CDS | 45.0% | |
| TTGGTATCAATCTCGCTGAG+GGG | - | chr2.4:330461-330480 | None:intergenic | 45.0% | |
| ! | CCAGGCCTTTTGCATATGTT+TGG | + | chr2.4:332055-332074 | MS.gene067492:CDS | 45.0% |
| ! | CCTCCTACCTTGTTATAGAG+TGG | - | chr2.4:331572-331591 | None:intergenic | 45.0% |
| ! | TTTTGAACCGGTGAGGTTAG+CGG | - | chr2.4:331115-331134 | None:intergenic | 45.0% |
| !! | TACGACCAAGGGTTTGGTTT+TGG | - | chr2.4:330427-330446 | None:intergenic | 45.0% |
| !! | TGTGGTATTTTGAACCGGTG+AGG | - | chr2.4:331122-331141 | None:intergenic | 45.0% |
| AAAGTAGACCAGGAGGAAGC+AGG | - | chr2.4:330719-330738 | None:intergenic | 50.0% | |
| AAGCAGACAATCCTGCAGCT+AGG | + | chr2.4:331884-331903 | MS.gene067492:CDS | 50.0% | |
| AAGGCCTGGTAACCAGTCAA+AGG | - | chr2.4:332044-332063 | None:intergenic | 50.0% | |
| ACAGTTACCGCTAACCTCAC+CGG | + | chr2.4:331105-331124 | MS.gene067492:CDS | 50.0% | |
| ACTATGCCTCAGCTGAACGT+TGG | - | chr2.4:330480-330499 | None:intergenic | 50.0% | |
| AGAGGTGGTTTACTACTGCG+GGG | - | chr2.4:331174-331193 | None:intergenic | 50.0% | |
| AGCAGACAATCCTGCAGCTA+GGG | + | chr2.4:331885-331904 | MS.gene067492:CDS | 50.0% | |
| CGTTGGTATCAATCTCGCTG+AGG | - | chr2.4:330463-330482 | None:intergenic | 50.0% | |
| GATAAAGGAAGGCCAGGACT+TGG | + | chr2.4:331714-331733 | MS.gene067492:CDS | 50.0% | |
| GATCTCTGGATTCCAAGTCC+TGG | - | chr2.4:331729-331748 | None:intergenic | 50.0% | |
| GCAGAATAGGAAACTGGCTG+TGG | + | chr2.4:330978-330997 | MS.gene067492:CDS | 50.0% | |
| GGACTGCCAATGAATTGGGA+AGG | + | chr2.4:331509-331528 | MS.gene067492:CDS | 50.0% | |
| GTTGGGTAAAGTAGACCAGG+AGG | - | chr2.4:330726-330745 | None:intergenic | 50.0% | |
| GTTTACTACTGCGGGGCTTA+TGG | - | chr2.4:331167-331186 | None:intergenic | 50.0% | |
| AAGGTCAGGGACGGCAGAAT+AGG | + | chr2.4:330965-330984 | MS.gene067492:intron | 55.0% | |
| ACATCATTGACGCCGGAACC+CGG | + | chr2.4:331780-331799 | MS.gene067492:intron | 55.0% | |
| AGACAATCCTGCAGCTAGGG+AGG | + | chr2.4:331888-331907 | MS.gene067492:CDS | 55.0% | |
| AGGAGCAGCAGCTTCAGAGT+CGG | - | chr2.4:330699-330718 | None:intergenic | 55.0% | |
| AGGTAGGAGGAGCCTCACTT+AGG | + | chr2.4:331582-331601 | MS.gene067492:intron | 55.0% | |
| GACAATCCTGCAGCTAGGGA+GGG | + | chr2.4:331889-331908 | MS.gene067492:CDS | 55.0% | |
| GGGACGGCAGAATAGGAAAC+TGG | + | chr2.4:330972-330991 | MS.gene067492:CDS | 55.0% | |
| GGTAGGAGGAGCCTCACTTA+GGG | + | chr2.4:331583-331602 | MS.gene067492:intron | 55.0% | |
| GTAGGAGGAGCCTCACTTAG+GGG | + | chr2.4:331584-331603 | MS.gene067492:intron | 55.0% | |
| TGAAGTGAGACCTCCCACTC+CGG | - | chr2.4:331017-331036 | None:intergenic | 55.0% | |
| ATCCTGCAGCTAGGGAGGGT+AGG | + | chr2.4:331893-331912 | MS.gene067492:CDS | 60.0% | |
| ATTGACGCCGGAACCCGGAA+GGG | + | chr2.4:331785-331804 | MS.gene067492:intron | 60.0% | |
| CAGAGAAGAATGAGGCGGCC+AGG | - | chr2.4:331239-331258 | None:intergenic | 60.0% | |
| CAGCAGCTTCAGAGTCGGAG+TGG | - | chr2.4:330694-330713 | None:intergenic | 60.0% | |
| CCAACTCCTCAGGGTCTCTC+CGG | + | chr2.4:330812-330831 | MS.gene067492:CDS | 60.0% | |
| CTCTCAATCTCCACCTGGCC+TGG | + | chr2.4:331218-331237 | MS.gene067492:intron | 60.0% | |
| TTCCTACCCTCCCTAGCTGC+AGG | - | chr2.4:331898-331917 | None:intergenic | 60.0% | |
| AAGAATGAGGCGGCCAGGCC+AGG | - | chr2.4:331234-331253 | None:intergenic | 65.0% | |
| CATTGACGCCGGAACCCGGA+AGG | + | chr2.4:331784-331803 | MS.gene067492:intron | 65.0% | |
| CCGGAGAGACCCTGAGGAGT+TGG | - | chr2.4:330815-330834 | None:intergenic | 65.0% | |
| CTGCTGCTCCTGCTTCCTCC+TGG | + | chr2.4:330708-330727 | MS.gene067492:CDS | 65.0% | |
| TTGGGACCGGAGAGACCCTG+AGG | - | chr2.4:330821-330840 | None:intergenic | 65.0% | |
| AATGAGGCGGCCAGGCCAGG+TGG | - | chr2.4:331231-331250 | None:intergenic | 70.0% | |
| ACCTCCCACTCCGGCGCTTG+TGG | - | chr2.4:331008-331027 | None:intergenic | 70.0% | |
| CCCACTCCGGCGCTTGTGGT+GGG | - | chr2.4:331004-331023 | None:intergenic | 70.0% | |
| CTGTGGCCCACCACAAGCGC+CGG | + | chr2.4:330995-331014 | MS.gene067492:CDS | 70.0% | |
| TCCCACTCCGGCGCTTGTGG+TGG | - | chr2.4:331005-331024 | None:intergenic | 70.0% | |
| !! | ACCACAAGCGCCGGAGTGGG+AGG | + | chr2.4:331004-331023 | MS.gene067492:CDS | 70.0% |
| !! | CCCACCACAAGCGCCGGAGT+GGG | + | chr2.4:331001-331020 | MS.gene067492:CDS | 70.0% |
| !! | GCCCACCACAAGCGCCGGAG+TGG | + | chr2.4:331000-331019 | MS.gene067492:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 330407 | 332112 | 330407 | ID=MS.gene067492 |
| chr2.4 | mRNA | 330407 | 332112 | 330407 | ID=MS.gene067492.t1;Parent=MS.gene067492 |
| chr2.4 | exon | 330407 | 330866 | 330407 | ID=MS.gene067492.t1.exon1;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 330407 | 330866 | 330407 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 330968 | 331205 | 330968 | ID=MS.gene067492.t1.exon2;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 330968 | 331205 | 330968 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 331286 | 331382 | 331286 | ID=MS.gene067492.t1.exon3;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 331286 | 331382 | 331286 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 331494 | 331583 | 331494 | ID=MS.gene067492.t1.exon4;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 331494 | 331583 | 331494 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 331684 | 331776 | 331684 | ID=MS.gene067492.t1.exon5;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 331684 | 331776 | 331684 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 331875 | 331942 | 331875 | ID=MS.gene067492.t1.exon6;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 331875 | 331942 | 331875 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| chr2.4 | exon | 332037 | 332112 | 332037 | ID=MS.gene067492.t1.exon7;Parent=MS.gene067492.t1 |
| chr2.4 | CDS | 332037 | 332112 | 332037 | ID=cds.MS.gene067492.t1;Parent=MS.gene067492.t1 |
| Gene Sequence |
| Protein sequence |
