Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067545.t1 | XP_024633746.1 | 100 | 144 | 0 | 0 | 1 | 144 | 1 | 144 | 7.70E-59 | 236.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067545.t1 | A6QPY8 | 50.5 | 105 | 35 | 3 | 45 | 143 | 38 | 131 | 1.3e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067545.t1 | B7FMQ2 | 100.0 | 144 | 0 | 0 | 1 | 144 | 1 | 144 | 5.6e-59 | 236.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene067545 | 0.8099 | 1.51E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene067545 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene067545 | 0.840086 | 1.07E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene067545 | 0.823411 | 1.41E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene067545 | 0.82286 | 1.89E-53 | -1.69E-46 |
| MS.gene051757 | MS.gene067545 | 0.817502 | 3.19E-52 | -1.69E-46 |
| MS.gene052856 | MS.gene067545 | 0.808818 | 2.57E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene067545 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene067545 | 0.802426 | 5.64E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene067545 | 0.81357 | 2.39E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene067545 | 0.841441 | 4.74E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene067545 | 0.814763 | 1.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067545.t1 | MTR_3g037570 | 100.000 | 144 | 0 | 0 | 1 | 144 | 1 | 144 | 7.44e-104 | 293 |
| MS.gene067545.t1 | MTR_8g076070 | 33.945 | 109 | 56 | 2 | 45 | 137 | 10 | 118 | 6.08e-12 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067545.t1 | AT1G26550 | 92.913 | 127 | 9 | 0 | 18 | 144 | 16 | 142 | 4.23e-79 | 230 |
| MS.gene067545.t1 | AT2G18040 | 36.697 | 109 | 53 | 2 | 45 | 137 | 7 | 115 | 1.64e-11 | 58.2 |
Find 53 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATGGCTGGCCCATTTC+AGG | 0.193780 | 3.2:-26011013 | MS.gene067545:CDS |
| TTCCTTCAGATAAGATAATA+TGG | 0.306070 | 3.2:+26010425 | None:intergenic |
| AAAATTTGTACCTTTGACAT+AGG | 0.412729 | 3.2:+26013463 | None:intergenic |
| TTGAAGGCAACTTCCTGAAA+TGG | 0.431848 | 3.2:+26011000 | None:intergenic |
| TTGGCTTGACAATGGGGATA+AGG | 0.432340 | 3.2:-26013059 | MS.gene067545:CDS |
| GAGTATTCTGAATGCCCATC+AGG | 0.445595 | 3.2:-26011072 | MS.gene067545:CDS |
| TATACCTTTGCAAACTCTGC+TGG | 0.446252 | 3.2:+26013031 | None:intergenic |
| TCTCCACCCTTCTTTCCTGA+TGG | 0.455060 | 3.2:+26011057 | None:intergenic |
| CTCCACCCTTCTTTCCTGAT+GGG | 0.462426 | 3.2:+26011058 | None:intergenic |
| AGAGCAATACGTTGATTTGA+AGG | 0.475332 | 3.2:+26010951 | None:intergenic |
| GGGAAAGCTGCTGATGGGCT+TGG | 0.479109 | 3.2:-26013494 | MS.gene067545:CDS |
| GGAGCACTGGTAACTCCAAC+AGG | 0.481302 | 3.2:+26010973 | None:intergenic |
| CGCAAAGGCAAAGGAGTCAA+AGG | 0.482750 | 3.2:-26013579 | MS.gene067545:CDS |
| GGCAAAGGAGTCAAAGGGTA+AGG | 0.483433 | 3.2:-26013573 | MS.gene067545:CDS |
| GGAAAGAAGGGTGGAGACCT+TGG | 0.487014 | 3.2:-26011051 | MS.gene067545:CDS |
| GTCAAAGGGTAAGGGAAAGC+AGG | 0.489595 | 3.2:-26013564 | MS.gene067545:CDS |
| GAGAATGCTTCCAAGGGAAA+AGG | 0.493127 | 3.2:-26013524 | MS.gene067545:CDS |
| TGAATGCCCATCAGGAAAGA+AGG | 0.494243 | 3.2:-26011064 | MS.gene067545:CDS |
| TGAAGGCAACTTCCTGAAAT+GGG | 0.494251 | 3.2:+26011001 | None:intergenic |
| ATGGTTTCCACGAGGAAAGA+TGG | 0.495254 | 3.2:-26011028 | MS.gene067545:CDS |
| AACTCCAACAGGTGTGTTGA+AGG | 0.504286 | 3.2:+26010984 | None:intergenic |
| AAGATGGTTGGCTTGACAAT+GGG | 0.509183 | 3.2:-26013066 | MS.gene067545:CDS |
| AAAGGTGGGAAAGCTGCTGA+TGG | 0.525616 | 3.2:-26013500 | MS.gene067545:CDS |
| CGTTGATTTGAAGGGAGCAC+TGG | 0.528757 | 3.2:+26010960 | None:intergenic |
| ACAAGAAGCTGCAAGATGGT+TGG | 0.543859 | 3.2:-26013078 | MS.gene067545:CDS |
| GCTTCCAAGGGAAAAGGAAA+AGG | 0.563501 | 3.2:-26013518 | MS.gene067545:CDS |
| AAGTGATGAGAATGCTTCCA+AGG | 0.564213 | 3.2:-26013531 | MS.gene067545:CDS |
| AGAAGGGTGGAGACCTTGGA+TGG | 0.573215 | 3.2:-26011047 | MS.gene067545:CDS |
| GAGCAATACGTTGATTTGAA+GGG | 0.574539 | 3.2:+26010952 | None:intergenic |
| TCCAAGGGAAAAGGAAAAGG+TGG | 0.576313 | 3.2:-26013515 | MS.gene067545:CDS |
| GTTGCCTTCAACACACCTGT+TGG | 0.577492 | 3.2:-26010988 | MS.gene067545:CDS |
| TACCATATTATCTTATCTGA+AGG | 0.583293 | 3.2:-26010427 | MS.gene067545:CDS |
| GCAAAGGCAAAGGAGTCAAA+GGG | 0.585236 | 3.2:-26013578 | MS.gene067545:CDS |
| AAGGGAAAGCAGGCTGCAAG+TGG | 0.585506 | 3.2:-26013554 | MS.gene067545:CDS |
| CAAGATGGTTGGCTTGACAA+TGG | 0.586005 | 3.2:-26013067 | MS.gene067545:CDS |
| TTTCCACGAGGAAAGATGGC+TGG | 0.587993 | 3.2:-26011024 | MS.gene067545:CDS |
| GGGAAAAGACGCAAAGGCAA+AGG | 0.594129 | 3.2:-26013588 | MS.gene067545:CDS |
| GAATGCCCATCAGGAAAGAA+GGG | 0.596490 | 3.2:-26011063 | MS.gene067545:CDS |
| TTCCTCGTGGAAACCATCCA+AGG | 0.602870 | 3.2:+26011034 | None:intergenic |
| AAGGTGGGAAAGCTGCTGAT+GGG | 0.609652 | 3.2:-26013499 | MS.gene067545:CDS |
| GGTACTTGCACCTATGTCAA+AGG | 0.611088 | 3.2:-26013473 | MS.gene067545:intron |
| GCTTACAAGAAGCTGCAAGA+TGG | 0.616528 | 3.2:-26013082 | MS.gene067545:CDS |
| TCCTCCAGCAGAGTTTGCAA+AGG | 0.623533 | 3.2:-26013035 | MS.gene067545:intron |
| ACCTTTGCAAACTCTGCTGG+AGG | 0.624084 | 3.2:+26013034 | None:intergenic |
| GCAAAGGAGTCAAAGGGTAA+GGG | 0.629245 | 3.2:-26013572 | MS.gene067545:CDS |
| CATATCTTATGTGAGAAACA+AGG | 0.634519 | 3.2:-26013118 | MS.gene067545:CDS |
| AACGATGGGAAAAGACGCAA+AGG | 0.635307 | 3.2:-26013594 | None:intergenic |
| AGTGATGAGAATGCTTCCAA+GGG | 0.642736 | 3.2:-26013530 | MS.gene067545:CDS |
| TGCCCATCAGGAAAGAAGGG+TGG | 0.643391 | 3.2:-26011060 | MS.gene067545:CDS |
| CCAAGGGAAAAGGAAAAGGT+GGG | 0.647496 | 3.2:-26013514 | MS.gene067545:CDS |
| GGGCCAGCCATCTTTCCTCG+TGG | 0.659422 | 3.2:+26011021 | None:intergenic |
| AGATGGTTGGCTTGACAATG+GGG | 0.681394 | 3.2:-26013065 | MS.gene067545:CDS |
| GACCTTGGATGGTTTCCACG+AGG | 0.719867 | 3.2:-26011036 | MS.gene067545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTAAAAAAAGAAAAA+GGG | - | chr3.2:26011283-26011302 | MS.gene067545:intron | 10.0% |
| !! | TAGAAATTAAAAAAAGAAAA+AGG | - | chr3.2:26011282-26011301 | MS.gene067545:intron | 10.0% |
| !! | TTCAAAAATATATTGAAATT+TGG | - | chr3.2:26010689-26010708 | MS.gene067545:intron | 10.0% |
| !!! | GGTATATTATTATTTTTTTT+AGG | - | chr3.2:26010990-26011009 | MS.gene067545:CDS | 10.0% |
| !!! | ATTTTATCATATTTTGGAAT+TGG | + | chr3.2:26012272-26012291 | None:intergenic | 15.0% |
| !! | AAATACATAAAATGCAAGAA+TGG | - | chr3.2:26011890-26011909 | MS.gene067545:intron | 20.0% |
| !! | AAGGAATAATTTCTTAAAGA+TGG | + | chr3.2:26013283-26013302 | None:intergenic | 20.0% |
| !! | ACTTCAACTAATAAACATAA+GGG | - | chr3.2:26010623-26010642 | MS.gene067545:intron | 20.0% |
| !! | ATATATAATAACAACCAGAA+GGG | + | chr3.2:26013083-26013102 | None:intergenic | 20.0% |
| !! | CTAGTATTGTAAAATGATTT+GGG | - | chr3.2:26011604-26011623 | MS.gene067545:intron | 20.0% |
| !! | TAGTATTGTAAAATGATTTG+GGG | - | chr3.2:26011605-26011624 | MS.gene067545:intron | 20.0% |
| !! | TATTTCATAATTACCTGTTA+AGG | - | chr3.2:26013346-26013365 | MS.gene067545:intron | 20.0% |
| !! | TCTAGTATTGTAAAATGATT+TGG | - | chr3.2:26011603-26011622 | MS.gene067545:intron | 20.0% |
| !! | TTAAATAGAAAGCCAAATAA+GGG | + | chr3.2:26012516-26012535 | None:intergenic | 20.0% |
| !! | TTACTTCCAAAGTAAAAAAA+AGG | + | chr3.2:26012320-26012339 | None:intergenic | 20.0% |
| !! | TTTAAATAGAAAGCCAAATA+AGG | + | chr3.2:26012517-26012536 | None:intergenic | 20.0% |
| !!! | ACTGCAATTTTATCATATTT+TGG | + | chr3.2:26012278-26012297 | None:intergenic | 20.0% |
| !!! | ATGTTTTGATATCAACAAAT+CGG | + | chr3.2:26012693-26012712 | None:intergenic | 20.0% |
| !!! | ATTTGGCTTTCTATTTAAAA+TGG | - | chr3.2:26012518-26012537 | MS.gene067545:intron | 20.0% |
| !!! | GCTTATAACTTGTATAAAAA+TGG | - | chr3.2:26013435-26013454 | MS.gene067545:intron | 20.0% |
| !!! | TATATTGTAACTTTCAAGTT+GGG | + | chr3.2:26011571-26011590 | None:intergenic | 20.0% |
| !!! | TTATATTGTAACTTTCAAGT+TGG | + | chr3.2:26011572-26011591 | None:intergenic | 20.0% |
| !!! | TTTAAGCCTTTTTTTTACTT+TGG | - | chr3.2:26012311-26012330 | MS.gene067545:intron | 20.0% |
| !!! | TTTGGCTTTCTATTTAAAAT+GGG | - | chr3.2:26012519-26012538 | MS.gene067545:intron | 20.0% |
| ! | AAAAGAAAAAGGGAAATTTC+AGG | - | chr3.2:26011293-26011312 | MS.gene067545:intron | 25.0% |
| ! | AAAATTTGTACCTTTGACAT+AGG | + | chr3.2:26010544-26010563 | None:intergenic | 25.0% |
| ! | AACCAAACAAACAAAATTGT+AGG | - | chr3.2:26012244-26012263 | MS.gene067545:intron | 25.0% |
| ! | AAGAAAATCCATCAAACAAA+TGG | + | chr3.2:26011743-26011762 | None:intergenic | 25.0% |
| ! | AATACACTAGGATAAAACAT+AGG | - | chr3.2:26012338-26012357 | MS.gene067545:intron | 25.0% |
| ! | ACATCCAACCAAATATTAAT+AGG | + | chr3.2:26013543-26013562 | None:intergenic | 25.0% |
| ! | ACCAAACAAACAAAATTGTA+GGG | - | chr3.2:26012245-26012264 | MS.gene067545:intron | 25.0% |
| ! | AGAAAACAGTCAAAGTAAAT+GGG | + | chr3.2:26010591-26010610 | None:intergenic | 25.0% |
| ! | ATATTGTGTATTCAATGCAT+TGG | + | chr3.2:26013329-26013348 | None:intergenic | 25.0% |
| ! | CAAAATATGATAAAACTGCA+GGG | + | chr3.2:26011034-26011053 | None:intergenic | 25.0% |
| ! | CACTTCAACTAATAAACATA+AGG | - | chr3.2:26010622-26010641 | MS.gene067545:intron | 25.0% |
| ! | CATATATAATAACAACCAGA+AGG | + | chr3.2:26013084-26013103 | None:intergenic | 25.0% |
| ! | CATCCAACCAAATATTAATA+GGG | + | chr3.2:26013542-26013561 | None:intergenic | 25.0% |
| ! | GTATATACTAAACCCTTATT+TGG | - | chr3.2:26012501-26012520 | MS.gene067545:intron | 25.0% |
| ! | TACCATATTATCTTATCTGA+AGG | - | chr3.2:26013577-26013596 | MS.gene067545:CDS | 25.0% |
| ! | TATAAGTTGTTTATCCAAAC+AGG | - | chr3.2:26013515-26013534 | MS.gene067545:CDS | 25.0% |
| ! | TGAAAGAAATTTATCGTATC+TGG | + | chr3.2:26010812-26010831 | None:intergenic | 25.0% |
| ! | TTACCACATAATAAGTTTCT+CGG | + | chr3.2:26012546-26012565 | None:intergenic | 25.0% |
| ! | TTCCTTCAGATAAGATAATA+TGG | + | chr3.2:26013582-26013601 | None:intergenic | 25.0% |
| !! | AATAAGTTGAAAACAGCTTA+TGG | + | chr3.2:26013401-26013420 | None:intergenic | 25.0% |
| !! | ACTTTAGTATTTTCAGTCTT+TGG | + | chr3.2:26011698-26011717 | None:intergenic | 25.0% |
| !! | ATGATCTCAAACTACAATTT+TGG | + | chr3.2:26011403-26011422 | None:intergenic | 25.0% |
| !! | TTGGCTTTCTATTTAAAATG+GGG | - | chr3.2:26012520-26012539 | MS.gene067545:intron | 25.0% |
| !!! | CAAACTACAATTTTGGTTTT+TGG | + | chr3.2:26011396-26011415 | None:intergenic | 25.0% |
| !!! | CAATTTTGTTTGTTTGGTTT+TGG | + | chr3.2:26012243-26012262 | None:intergenic | 25.0% |
| !!! | CACTTTTTTTTGTTTGGTTT+TGG | - | chr3.2:26011067-26011086 | MS.gene067545:CDS | 25.0% |
| !!! | GTTTTATCATATTTTGGCAT+TGG | - | chr3.2:26011038-26011057 | MS.gene067545:CDS | 25.0% |
| !!! | TGAAGTATTTGACTTTTTGA+AGG | + | chr3.2:26013302-26013321 | None:intergenic | 25.0% |
| AAAACGAACAGATACAACAT+TGG | + | chr3.2:26011483-26011502 | None:intergenic | 30.0% | |
| AACAGGACCCTATTAATATT+TGG | - | chr3.2:26013532-26013551 | MS.gene067545:CDS | 30.0% | |
| AATATTAATAGGGTCCTGTT+TGG | + | chr3.2:26013532-26013551 | None:intergenic | 30.0% | |
| AGAAGGGGATAAAATAACTA+TGG | + | chr3.2:26012572-26012591 | None:intergenic | 30.0% | |
| AGCAAGACTCTTATGTTAAT+AGG | + | chr3.2:26013243-26013262 | None:intergenic | 30.0% | |
| ATACTAAAGTTTATGCATGC+TGG | - | chr3.2:26011708-26011727 | MS.gene067545:intron | 30.0% | |
| ATCGTAAAAAGAACATAGTG+AGG | + | chr3.2:26010668-26010687 | None:intergenic | 30.0% | |
| CAGAAAACAGTCAAAGTAAA+TGG | + | chr3.2:26010592-26010611 | None:intergenic | 30.0% | |
| CATATCTTATGTGAGAAACA+AGG | - | chr3.2:26010886-26010905 | MS.gene067545:intron | 30.0% | |
| CCAAAATATGATAAAACTGC+AGG | + | chr3.2:26011035-26011054 | None:intergenic | 30.0% | |
| TACTAAAGTTTATGCATGCT+GGG | - | chr3.2:26011709-26011728 | MS.gene067545:intron | 30.0% | |
| TATGTATTTGCTTGTAGATC+TGG | + | chr3.2:26011879-26011898 | None:intergenic | 30.0% | |
| TTAAAGATATTAGAGCCTTG+TGG | + | chr3.2:26011821-26011840 | None:intergenic | 30.0% | |
| TTTAACAGTTGACAAACAGA+GGG | - | chr3.2:26012185-26012204 | MS.gene067545:intron | 30.0% | |
| TTTAACAGTTGACTAACAGA+GGG | + | chr3.2:26011125-26011144 | None:intergenic | 30.0% | |
| ! | AAACTGAAAATGCTTTTCGA+AGG | - | chr3.2:26010777-26010796 | MS.gene067545:intron | 30.0% |
| ! | AACCAAACAAAAAAAAGTGC+AGG | + | chr3.2:26011066-26011085 | None:intergenic | 30.0% |
| ! | ACCAAACAAAAAAAAGTGCA+GGG | + | chr3.2:26011065-26011084 | None:intergenic | 30.0% |
| ! | ATTTGTTACAACCAACATAG+TGG | + | chr3.2:26011660-26011679 | None:intergenic | 30.0% |
| ! | TACTTTGGAAGTAATACACT+AGG | - | chr3.2:26012326-26012345 | MS.gene067545:intron | 30.0% |
| ! | TTTTAACAGTTGACAAACAG+AGG | - | chr3.2:26012184-26012203 | MS.gene067545:intron | 30.0% |
| ! | TTTTAACAGTTGACTAACAG+AGG | + | chr3.2:26011126-26011145 | None:intergenic | 30.0% |
| !! | CCTGCAGTTTTATCATATTT+TGG | - | chr3.2:26011032-26011051 | MS.gene067545:CDS | 30.0% |
| !! | GCTCAAAAATGGATTAAATG+CGG | - | chr3.2:26012592-26012611 | MS.gene067545:intron | 30.0% |
| !! | TAATCCATTTTTGAGCAGAA+GGG | + | chr3.2:26012588-26012607 | None:intergenic | 30.0% |
| !! | TCCCTACAATTTTGTTTGTT+TGG | + | chr3.2:26012249-26012268 | None:intergenic | 30.0% |
| !! | TTAATCCATTTTTGAGCAGA+AGG | + | chr3.2:26012589-26012608 | None:intergenic | 30.0% |
| AAACGCGATTACATTGAGAA+AGG | - | chr3.2:26011324-26011343 | MS.gene067545:intron | 35.0% | |
| AACGCGATTACATTGAGAAA+GGG | - | chr3.2:26011325-26011344 | MS.gene067545:intron | 35.0% | |
| AAGAAGAGAAACAGAATTGC+AGG | + | chr3.2:26011934-26011953 | None:intergenic | 35.0% | |
| AATACACACGCATGTCAATT+TGG | - | chr3.2:26012804-26012823 | MS.gene067545:intron | 35.0% | |
| ACCTGTTAAGGAAAGTTTGT+AGG | - | chr3.2:26013358-26013377 | MS.gene067545:intron | 35.0% | |
| AGAAGAGAAACAGAATTGCA+GGG | + | chr3.2:26011933-26011952 | None:intergenic | 35.0% | |
| ATCAAACTTGACCACTATGT+TGG | - | chr3.2:26011646-26011665 | MS.gene067545:intron | 35.0% | |
| ATTACATTGAGAAAGGGGTT+GGG | - | chr3.2:26011331-26011350 | MS.gene067545:intron | 35.0% | |
| CCATGTGGCATGAAATAATT+GGG | + | chr3.2:26011180-26011199 | None:intergenic | 35.0% | |
| GAACATAGTGAGGAAACTAT+TGG | + | chr3.2:26010658-26010677 | None:intergenic | 35.0% | |
| GCACAAAATGGAATTGATGA+TGG | + | chr3.2:26011447-26011466 | None:intergenic | 35.0% | |
| GGACCCTATTAATATTTGGT+TGG | - | chr3.2:26013536-26013555 | MS.gene067545:CDS | 35.0% | |
| TAATATTTCGCCTATCTCAC+AGG | - | chr3.2:26012901-26012920 | MS.gene067545:intron | 35.0% | |
| TCCTACAAACTTTCCTTAAC+AGG | + | chr3.2:26013362-26013381 | None:intergenic | 35.0% | |
| ! | ACTGGCAGGAAATTTTTGAA+AGG | - | chr3.2:26012409-26012428 | MS.gene067545:intron | 35.0% |
| ! | ATTGACATGCGTGTGTATTT+TGG | + | chr3.2:26012803-26012822 | None:intergenic | 35.0% |
| !! | AATCCATTTTTGAGCAGAAG+GGG | + | chr3.2:26012587-26012606 | None:intergenic | 35.0% |
| !! | AGAGCAATACGTTGATTTGA+AGG | + | chr3.2:26013056-26013075 | None:intergenic | 35.0% |
| !! | CAAAATGGAATTGATGATGG+AGG | + | chr3.2:26011444-26011463 | None:intergenic | 35.0% |
| !! | CAAACTTTTTCCAAAGTGCA+AGG | - | chr3.2:26012216-26012235 | MS.gene067545:intron | 35.0% |
| !! | CAAACTTTTTCCAAAGTGCA+AGG | + | chr3.2:26012235-26012216 | None:intergenic | 35.0% |
| !! | CGTAGAGTTACATTGATTTC+TGG | - | chr3.2:26010842-26010861 | MS.gene067545:intron | 35.0% |
| !! | CTGGCAGGAAATTTTTGAAA+GGG | - | chr3.2:26012410-26012429 | MS.gene067545:intron | 35.0% |
| !! | GAGCAATACGTTGATTTGAA+GGG | + | chr3.2:26013055-26013074 | None:intergenic | 35.0% |
| !! | TGGTTTTTGGACATGATTTG+TGG | + | chr3.2:26011383-26011402 | None:intergenic | 35.0% |
| !!! | GCACTTGAATTTTAACTCAC+TGG | + | chr3.2:26011789-26011808 | None:intergenic | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | - | chr3.2:26011061-26011080 | MS.gene067545:CDS | 35.0% |
| AAGTGATGAGAATGCTTCCA+AGG | - | chr3.2:26010473-26010492 | MS.gene067545:intron | 40.0% | |
| ACGCGATTACATTGAGAAAG+GGG | - | chr3.2:26011326-26011345 | MS.gene067545:intron | 40.0% | |
| AGAAACAGAATTGCAGGGAT+GGG | + | chr3.2:26011928-26011947 | None:intergenic | 40.0% | |
| AGATCTGGTGTAGAAAACTG+AGG | + | chr3.2:26011864-26011883 | None:intergenic | 40.0% | |
| AGGTGGTTCCATTTGTTTGA+TGG | - | chr3.2:26011732-26011751 | MS.gene067545:intron | 40.0% | |
| AGTGATGAGAATGCTTCCAA+GGG | - | chr3.2:26010474-26010493 | MS.gene067545:intron | 40.0% | |
| ATACAACATTGGAAACGCGA+CGG | + | chr3.2:26011472-26011491 | None:intergenic | 40.0% | |
| CAATCCAAAAGACCTAGCTA+AGG | + | chr3.2:26013205-26013224 | None:intergenic | 40.0% | |
| CATGAAATAATTGGGCCACA+TGG | + | chr3.2:26011172-26011191 | None:intergenic | 40.0% | |
| CCCAATTATTTCATGCCACA+TGG | - | chr3.2:26011177-26011196 | MS.gene067545:intron | 40.0% | |
| CTGCATACAATGACCATTGA+CGG | - | chr3.2:26012725-26012744 | MS.gene067545:intron | 40.0% | |
| GATTACATTGAGAAAGGGGT+TGG | - | chr3.2:26011330-26011349 | MS.gene067545:intron | 40.0% | |
| GCCATGTGGCATGAAATAAT+TGG | + | chr3.2:26011181-26011200 | None:intergenic | 40.0% | |
| TAAAGTTTATGCATGCTGGG+AGG | - | chr3.2:26011712-26011731 | MS.gene067545:intron | 40.0% | |
| TATACCTTTGCAAACTCTGC+TGG | + | chr3.2:26010976-26010995 | None:intergenic | 40.0% | |
| TATCCCCTTCTGCTCAAAAA+TGG | - | chr3.2:26012581-26012600 | MS.gene067545:intron | 40.0% | |
| TATTTGGTTGGATGTCATGC+AGG | - | chr3.2:26013548-26013567 | MS.gene067545:CDS | 40.0% | |
| TCGTCTGATCTTTCATCCTA+CGG | + | chr3.2:26012646-26012665 | None:intergenic | 40.0% | |
| TGAAGGCAACTTCCTGAAAT+GGG | + | chr3.2:26013006-26013025 | None:intergenic | 40.0% | |
| TGCATACAATGACCATTGAC+GGG | - | chr3.2:26012726-26012745 | MS.gene067545:intron | 40.0% | |
| TTGAAGGCAACTTCCTGAAA+TGG | + | chr3.2:26013007-26013026 | None:intergenic | 40.0% | |
| ! | AAAACTAACAGAGTGCCATG+TGG | - | chr3.2:26011154-26011173 | MS.gene067545:intron | 40.0% |
| ! | GTATTTTCAGTCTTTGGCAG+TGG | + | chr3.2:26011692-26011711 | None:intergenic | 40.0% |
| ! | TGTCTTGCTGTGCAAAGTAA+AGG | + | chr3.2:26010868-26010887 | None:intergenic | 40.0% |
| !! | AAGATGGTTGGCTTGACAAT+GGG | - | chr3.2:26010938-26010957 | MS.gene067545:intron | 40.0% |
| !! | ACATGGCACTCTGTTAGTTT+TGG | + | chr3.2:26011155-26011174 | None:intergenic | 40.0% |
| !! | TCAAGTTGGGTCAGTACAAA+AGG | + | chr3.2:26011558-26011577 | None:intergenic | 40.0% |
| !! | TCCTGAAAAGAGAGTATCAC+TGG | - | chr3.2:26012391-26012410 | MS.gene067545:intron | 40.0% |
| AACTCCAACAGGTGTGTTGA+AGG | + | chr3.2:26013023-26013042 | None:intergenic | 45.0% | |
| AAGTGCAGATGCTTACCACA+AGG | - | chr3.2:26011803-26011822 | MS.gene067545:intron | 45.0% | |
| ACAAGAAGCTGCAAGATGGT+TGG | - | chr3.2:26010926-26010945 | MS.gene067545:intron | 45.0% | |
| ACGCATGTCAATTTGGTCGA+AGG | - | chr3.2:26012811-26012830 | MS.gene067545:intron | 45.0% | |
| ATGGTTTCCACGAGGAAAGA+TGG | - | chr3.2:26012976-26012995 | MS.gene067545:intron | 45.0% | |
| ATTGAGAAAGGGGTTGGGAA+TGG | - | chr3.2:26011336-26011355 | MS.gene067545:intron | 45.0% | |
| ATTTCTTAAAGATGGCCCCG+AGG | + | chr3.2:26013275-26013294 | None:intergenic | 45.0% | |
| CCAAGGGAAAAGGAAAAGGT+GGG | - | chr3.2:26010490-26010509 | MS.gene067545:intron | 45.0% | |
| CTAGCTAAGGAGAGAAGAGA+AGG | + | chr3.2:26013192-26013211 | None:intergenic | 45.0% | |
| CTTCTCTTCTCTCCTTAGCT+AGG | - | chr3.2:26013190-26013209 | MS.gene067545:intron | 45.0% | |
| GAATGCCCATCAGGAAAGAA+GGG | - | chr3.2:26012941-26012960 | MS.gene067545:intron | 45.0% | |
| GAGAAACAGAATTGCAGGGA+TGG | + | chr3.2:26011929-26011948 | None:intergenic | 45.0% | |
| GAGAATGCTTCCAAGGGAAA+AGG | - | chr3.2:26010480-26010499 | MS.gene067545:intron | 45.0% | |
| GAGTATTCTGAATGCCCATC+AGG | - | chr3.2:26012932-26012951 | MS.gene067545:intron | 45.0% | |
| GCAAAGGAGTCAAAGGGTAA+GGG | - | chr3.2:26010432-26010451 | MS.gene067545:CDS | 45.0% | |
| GCAAAGGCAAAGGAGTCAAA+GGG | - | chr3.2:26010426-26010445 | MS.gene067545:CDS | 45.0% | |
| GCAGTCTTGAATTCAACCGT+AGG | - | chr3.2:26012627-26012646 | MS.gene067545:intron | 45.0% | |
| GCTCGTGGCGTGAAATAATT+GGG | - | chr3.2:26012129-26012148 | MS.gene067545:intron | 45.0% | |
| GCTTACAAGAAGCTGCAAGA+TGG | - | chr3.2:26010922-26010941 | MS.gene067545:intron | 45.0% | |
| GCTTCCAAGGGAAAAGGAAA+AGG | - | chr3.2:26010486-26010505 | MS.gene067545:intron | 45.0% | |
| GGGCCGAGAAACTTATTATG+TGG | - | chr3.2:26012540-26012559 | MS.gene067545:intron | 45.0% | |
| GGTACTTGCACCTATGTCAA+AGG | - | chr3.2:26010531-26010550 | MS.gene067545:intron | 45.0% | |
| GGTCAGTAAATACCCGTCAA+TGG | + | chr3.2:26012741-26012760 | None:intergenic | 45.0% | |
| GTCAAAGTAAATGGGCCAGA+AGG | + | chr3.2:26010583-26010602 | None:intergenic | 45.0% | |
| TCCAAGGGAAAAGGAAAAGG+TGG | - | chr3.2:26010489-26010508 | MS.gene067545:intron | 45.0% | |
| TCTGGTGTAGAAAACTGAGG+TGG | + | chr3.2:26011861-26011880 | None:intergenic | 45.0% | |
| TCTTGAGCTACCTGTGAGAT+AGG | + | chr3.2:26012914-26012933 | None:intergenic | 45.0% | |
| TGAATGCCCATCAGGAAAGA+AGG | - | chr3.2:26012940-26012959 | MS.gene067545:intron | 45.0% | |
| TGCTCGTGGCGTGAAATAAT+TGG | - | chr3.2:26012128-26012147 | MS.gene067545:intron | 45.0% | |
| TTTCTCTTGTAGTGTGCTCG+TGG | - | chr3.2:26012114-26012133 | MS.gene067545:intron | 45.0% | |
| ! | AAAACTAACAGAGTGCCACG+TGG | + | chr3.2:26012155-26012174 | None:intergenic | 45.0% |
| ! | CTCTCCTTAGCTAGGTCTTT+TGG | - | chr3.2:26013198-26013217 | MS.gene067545:intron | 45.0% |
| ! | GCCAGTGATACTCTCTTTTC+AGG | + | chr3.2:26012395-26012414 | None:intergenic | 45.0% |
| ! | TTGGCTTGACAATGGGGATA+AGG | - | chr3.2:26010945-26010964 | MS.gene067545:intron | 45.0% |
| ! | TTGTATGGTAGAGTGCCATG+TGG | + | chr3.2:26011195-26011214 | None:intergenic | 45.0% |
| !! | ACGTGGCACTCTGTTAGTTT+TGG | - | chr3.2:26012154-26012173 | MS.gene067545:intron | 45.0% |
| !! | AGATGGTTGGCTTGACAATG+GGG | - | chr3.2:26010939-26010958 | MS.gene067545:intron | 45.0% |
| !! | AGGGGTTGGGAATGGATTTT+AGG | - | chr3.2:26011344-26011363 | MS.gene067545:intron | 45.0% |
| !! | ATGCGTGTGTATTTTGGAGG+AGG | + | chr3.2:26012797-26012816 | None:intergenic | 45.0% |
| !! | CAAGATGGTTGGCTTGACAA+TGG | - | chr3.2:26010937-26010956 | MS.gene067545:intron | 45.0% |
| !! | CCAGAAGGTGCTTGTAAATG+GGG | + | chr3.2:26010568-26010587 | None:intergenic | 45.0% |
| !! | GAAAAGAGAGTATCACTGGC+AGG | - | chr3.2:26012395-26012414 | MS.gene067545:intron | 45.0% |
| !! | GACATGCGTGTGTATTTTGG+AGG | + | chr3.2:26012800-26012819 | None:intergenic | 45.0% |
| !! | GCCAGAAGGTGCTTGTAAAT+GGG | + | chr3.2:26010569-26010588 | None:intergenic | 45.0% |
| !! | GGGGTTGGGAATGGATTTTA+GGG | - | chr3.2:26011345-26011364 | MS.gene067545:intron | 45.0% |
| !! | GTTTTGAGCTGCGTTTTCGT+TGG | - | chr3.2:26011498-26011517 | MS.gene067545:intron | 45.0% |
| !! | TGCGTGTGTATTTTGGAGGA+GGG | + | chr3.2:26012796-26012815 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGTCCTTGCACTT+TGG | - | chr3.2:26011081-26011100 | MS.gene067545:CDS | 45.0% |
| !!! | TGGTTTTGGTCCTTGCACTT+TGG | + | chr3.2:26011100-26011081 | None:intergenic | 45.0% |
| !!! | TTTAATTTTAAAATTTTGTA+TGG | + | chr3.2:26011210-26011229 | None:intergenic | 5.0% |
| AAAGGTGGGAAAGCTGCTGA+TGG | - | chr3.2:26010504-26010523 | MS.gene067545:intron | 50.0% | |
| AAGGTGGGAAAGCTGCTGAT+GGG | - | chr3.2:26010505-26010524 | MS.gene067545:intron | 50.0% | |
| ACCTTTGCAAACTCTGCTGG+AGG | + | chr3.2:26010973-26010992 | None:intergenic | 50.0% | |
| AGTTTATGCATGCTGGGAGG+TGG | - | chr3.2:26011715-26011734 | MS.gene067545:intron | 50.0% | |
| CCCCATTTACAAGCACCTTC+TGG | - | chr3.2:26010565-26010584 | MS.gene067545:intron | 50.0% | |
| CGCAAAGGCAAAGGAGTCAA+AGG | - | chr3.2:26010425-26010444 | MS.gene067545:CDS | 50.0% | |
| CGTGAAATAATTGGGCCACG+TGG | - | chr3.2:26012137-26012156 | MS.gene067545:intron | 50.0% | |
| CTCCACCCTTCTTTCCTGAT+GGG | + | chr3.2:26012949-26012968 | None:intergenic | 50.0% | |
| GACGGGTATTTACTGACCAC+AGG | - | chr3.2:26012743-26012762 | MS.gene067545:intron | 50.0% | |
| GGCAAAGGAGTCAAAGGGTA+AGG | - | chr3.2:26010431-26010450 | MS.gene067545:CDS | 50.0% | |
| GGGAAAAGACGCAAAGGCAA+AGG | - | chr3.2:26010416-26010435 | MS.gene067545:CDS | 50.0% | |
| GTCAAAGGGTAAGGGAAAGC+AGG | - | chr3.2:26010440-26010459 | MS.gene067545:intron | 50.0% | |
| GTCTTGCTAACGAGTGTCCT+CGG | - | chr3.2:26013255-26013274 | MS.gene067545:intron | 50.0% | |
| GTTGCCTTCAACACACCTGT+TGG | - | chr3.2:26013016-26013035 | MS.gene067545:intron | 50.0% | |
| TCCTCCAGCAGAGTTTGCAA+AGG | - | chr3.2:26010969-26010988 | MS.gene067545:CDS | 50.0% | |
| TCTCCACCCTTCTTTCCTGA+TGG | + | chr3.2:26012950-26012969 | None:intergenic | 50.0% | |
| TCTTGCTAACGAGTGTCCTC+GGG | - | chr3.2:26013256-26013275 | MS.gene067545:intron | 50.0% | |
| TTCCTCGTGGAAACCATCCA+AGG | + | chr3.2:26012973-26012992 | None:intergenic | 50.0% | |
| TTTCCACGAGGAAAGATGGC+TGG | - | chr3.2:26012980-26012999 | MS.gene067545:intron | 50.0% | |
| ! | AAAGATGGCTGGCCCATTTC+AGG | - | chr3.2:26012991-26013010 | MS.gene067545:intron | 50.0% |
| ! | AACGCGACGGAAGCACAAAA+TGG | + | chr3.2:26011459-26011478 | None:intergenic | 50.0% |
| ! | CCCACCTTTTCCTTTTCCCT+TGG | + | chr3.2:26010493-26010512 | None:intergenic | 50.0% |
| !! | CGTGTGTATTTTGGAGGAGG+GGG | + | chr3.2:26012794-26012813 | None:intergenic | 50.0% |
| !! | CGTTGATTTGAAGGGAGCAC+TGG | + | chr3.2:26013047-26013066 | None:intergenic | 50.0% |
| !! | GCGTGTGTATTTTGGAGGAG+GGG | + | chr3.2:26012795-26012814 | None:intergenic | 50.0% |
| !! | GGCCAGAAGGTGCTTGTAAA+TGG | + | chr3.2:26010570-26010589 | None:intergenic | 50.0% |
| !! | GTGTGTATTTTGGAGGAGGG+GGG | + | chr3.2:26012793-26012812 | None:intergenic | 50.0% |
| !! | TGTGTATTTTGGAGGAGGGG+GGG | + | chr3.2:26012792-26012811 | None:intergenic | 50.0% |
| AAGGGAAAGCAGGCTGCAAG+TGG | - | chr3.2:26010450-26010469 | MS.gene067545:intron | 55.0% | |
| AGAAGGGTGGAGACCTTGGA+TGG | - | chr3.2:26012957-26012976 | MS.gene067545:intron | 55.0% | |
| CTTGCTAACGAGTGTCCTCG+GGG | - | chr3.2:26013257-26013276 | MS.gene067545:intron | 55.0% | |
| GACCTTGGATGGTTTCCACG+AGG | - | chr3.2:26012968-26012987 | MS.gene067545:intron | 55.0% | |
| GGAAAGAAGGGTGGAGACCT+TGG | - | chr3.2:26012953-26012972 | MS.gene067545:intron | 55.0% | |
| GGTTGGATGTCATGCAGGCA+TGG | - | chr3.2:26013553-26013572 | MS.gene067545:CDS | 55.0% | |
| GTATTGCTCTCGCACCCTTC+TGG | - | chr3.2:26013066-26013085 | MS.gene067545:CDS | 55.0% | |
| TGCCCATCAGGAAAGAAGGG+TGG | - | chr3.2:26012944-26012963 | MS.gene067545:intron | 55.0% | |
| !! | GGAGCACTGGTAACTCCAAC+AGG | + | chr3.2:26013034-26013053 | None:intergenic | 55.0% |
| !! | GTGTATTTTGGAGGAGGGGG+GGG | + | chr3.2:26012791-26012810 | None:intergenic | 55.0% |
| !! | TGTATTTTGGAGGAGGGGGG+GGG | + | chr3.2:26012790-26012809 | None:intergenic | 55.0% |
| GGGGGGATCAGGATTTCCTG+TGG | + | chr3.2:26012762-26012781 | None:intergenic | 60.0% | |
| !! | GGGAAAGCTGCTGATGGGCT+TGG | - | chr3.2:26010510-26010529 | MS.gene067545:intron | 60.0% |
| !! | GTATTTTGGAGGAGGGGGGG+GGG | + | chr3.2:26012789-26012808 | None:intergenic | 60.0% |
| !! | TATTTTGGAGGAGGGGGGGG+GGG | + | chr3.2:26012788-26012807 | None:intergenic | 60.0% |
| GGGCCAGCCATCTTTCCTCG+TGG | + | chr3.2:26012986-26013005 | None:intergenic | 65.0% | |
| !! | ATTTTGGAGGAGGGGGGGGG+GGG | + | chr3.2:26012787-26012806 | None:intergenic | 65.0% |
| !! | TTTTGGAGGAGGGGGGGGGG+GGG | + | chr3.2:26012786-26012805 | None:intergenic | 70.0% |
| TTTGGAGGAGGGGGGGGGGG+GGG | + | chr3.2:26012785-26012804 | None:intergenic | 75.0% | |
| ! | TTGGAGGAGGGGGGGGGGGG+GGG | + | chr3.2:26012784-26012803 | None:intergenic | 80.0% |
| ! | TGGAGGAGGGGGGGGGGGGG+GGG | + | chr3.2:26012783-26012802 | None:intergenic | 85.0% |
| ! | AGGAGGGGGGGGGGGGGGGG+GGG | + | chr3.2:26012780-26012799 | None:intergenic | 90.0% |
| ! | GAGGAGGGGGGGGGGGGGGG+GGG | + | chr3.2:26012781-26012800 | None:intergenic | 90.0% |
| ! | GGAGGAGGGGGGGGGGGGGG+GGG | + | chr3.2:26012782-26012801 | None:intergenic | 90.0% |
| ! | GGGGGGGGGGGGGGGGGATC+AGG | + | chr3.2:26012773-26012792 | None:intergenic | 90.0% |
| ! | GGAGGGGGGGGGGGGGGGGG+GGG | + | chr3.2:26012779-26012798 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 26010414 | 26013612 | 26010414 | ID=MS.gene067545 |
| chr3.2 | mRNA | 26010414 | 26013612 | 26010414 | ID=MS.gene067545.t1;Parent=MS.gene067545 |
| chr3.2 | exon | 26013474 | 26013612 | 26013474 | ID=MS.gene067545.t1.exon1;Parent=MS.gene067545.t1 |
| chr3.2 | CDS | 26013474 | 26013612 | 26013474 | ID=cds.MS.gene067545.t1;Parent=MS.gene067545.t1 |
| chr3.2 | exon | 26013036 | 26013145 | 26013036 | ID=MS.gene067545.t1.exon2;Parent=MS.gene067545.t1 |
| chr3.2 | CDS | 26013036 | 26013145 | 26013036 | ID=cds.MS.gene067545.t1;Parent=MS.gene067545.t1 |
| chr3.2 | exon | 26010961 | 26011103 | 26010961 | ID=MS.gene067545.t1.exon3;Parent=MS.gene067545.t1 |
| chr3.2 | CDS | 26010961 | 26011103 | 26010961 | ID=cds.MS.gene067545.t1;Parent=MS.gene067545.t1 |
| chr3.2 | exon | 26010414 | 26010456 | 26010414 | ID=MS.gene067545.t1.exon4;Parent=MS.gene067545.t1 |
| chr3.2 | CDS | 26010414 | 26010456 | 26010414 | ID=cds.MS.gene067545.t1;Parent=MS.gene067545.t1 |
| Gene Sequence |
| Protein sequence |
