Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068349.t1 | XP_024627594.1 | 88.9 | 234 | 25 | 1 | 6 | 239 | 4 | 236 | 1.10E-105 | 392.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068349.t1 | O81223 | 60.1 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 4.9e-67 | 255.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068349.t1 | G8A2Y4 | 88.9 | 234 | 25 | 1 | 6 | 239 | 4 | 236 | 7.7e-106 | 392.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049861 | MS.gene068349 | 0.805726 | 1.16E-49 | -1.69E-46 |
| MS.gene052818 | MS.gene068349 | -0.801525 | 8.64E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene068349 | 0.812644 | 3.82E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene068349 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene054222 | MS.gene068349 | 0.826872 | 2.14E-54 | -1.69E-46 |
| MS.gene05469 | MS.gene068349 | 0.820325 | 7.28E-53 | -1.69E-46 |
| MS.gene056986 | MS.gene068349 | 0.82636 | 2.83E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene068349 | 0.802325 | 5.92E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene068349 | 0.859976 | 2.85E-63 | -1.69E-46 |
| MS.gene06011 | MS.gene068349 | 0.828574 | 8.34E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068349.t1 | MTR_8g027620 | 93.305 | 239 | 13 | 2 | 1 | 239 | 1 | 236 | 1.75e-159 | 444 |
| MS.gene068349.t1 | MTR_3g091440 | 69.388 | 196 | 60 | 0 | 42 | 237 | 17 | 212 | 4.29e-95 | 278 |
| MS.gene068349.t1 | MTR_3g091440 | 66.842 | 190 | 63 | 0 | 48 | 237 | 24 | 213 | 3.58e-88 | 260 |
| MS.gene068349.t1 | MTR_8g099575 | 62.051 | 195 | 74 | 0 | 42 | 236 | 16 | 210 | 3.18e-84 | 249 |
| MS.gene068349.t1 | MTR_4g099210 | 56.923 | 195 | 84 | 0 | 42 | 236 | 16 | 210 | 5.37e-77 | 231 |
| MS.gene068349.t1 | MTR_1g016430 | 57.216 | 194 | 83 | 0 | 41 | 234 | 54 | 247 | 1.48e-75 | 229 |
| MS.gene068349.t1 | MTR_3g060730 | 54.146 | 205 | 92 | 1 | 35 | 237 | 22 | 226 | 1.53e-75 | 228 |
| MS.gene068349.t1 | MTR_4g134250 | 54.922 | 193 | 87 | 0 | 45 | 237 | 35 | 227 | 8.74e-75 | 226 |
| MS.gene068349.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 42 | 237 | 31 | 226 | 2.57e-74 | 225 |
| MS.gene068349.t1 | MTR_8g099570 | 52.551 | 196 | 93 | 0 | 42 | 237 | 58 | 253 | 2.38e-72 | 221 |
| MS.gene068349.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 1 | 181 | 5.14e-72 | 218 |
| MS.gene068349.t1 | MTR_2g027500 | 53.403 | 191 | 89 | 0 | 47 | 237 | 34 | 224 | 1.03e-71 | 218 |
| MS.gene068349.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 54 | 237 | 5 | 188 | 3.21e-71 | 216 |
| MS.gene068349.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 54 | 234 | 99 | 279 | 7.21e-71 | 218 |
| MS.gene068349.t1 | MTR_2g027440 | 53.226 | 186 | 87 | 0 | 51 | 236 | 43 | 228 | 6.88e-67 | 206 |
| MS.gene068349.t1 | MTR_3g091440 | 71.631 | 141 | 40 | 0 | 42 | 182 | 17 | 157 | 1.05e-65 | 201 |
| MS.gene068349.t1 | MTR_2g027480 | 52.688 | 186 | 88 | 0 | 51 | 236 | 43 | 228 | 2.81e-65 | 202 |
| MS.gene068349.t1 | MTR_2g027520 | 50.262 | 191 | 95 | 0 | 47 | 237 | 41 | 231 | 5.08e-63 | 197 |
| MS.gene068349.t1 | MTR_8g016170 | 53.226 | 186 | 87 | 0 | 47 | 232 | 66 | 251 | 1.03e-62 | 197 |
| MS.gene068349.t1 | MTR_5g013560 | 48.485 | 198 | 91 | 1 | 42 | 239 | 15 | 201 | 3.10e-60 | 188 |
| MS.gene068349.t1 | MTR_8g016170 | 54.070 | 172 | 79 | 0 | 47 | 218 | 47 | 218 | 2.58e-58 | 184 |
| MS.gene068349.t1 | MTR_4g113505 | 45.109 | 184 | 101 | 0 | 53 | 236 | 6 | 189 | 1.37e-54 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068349.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.91e-90 | 266 |
| MS.gene068349.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.91e-90 | 266 |
| MS.gene068349.t1 | AT5G24270 | 60.092 | 218 | 81 | 1 | 19 | 236 | 3 | 214 | 1.91e-90 | 266 |
| MS.gene068349.t1 | AT5G24270 | 63.441 | 186 | 68 | 0 | 51 | 236 | 4 | 189 | 1.32e-83 | 248 |
| MS.gene068349.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.12e-79 | 237 |
| MS.gene068349.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.12e-79 | 237 |
| MS.gene068349.t1 | AT1G64480 | 60.000 | 195 | 78 | 0 | 42 | 236 | 20 | 214 | 3.12e-79 | 237 |
| MS.gene068349.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 53 | 246 | 4.36e-75 | 228 |
| MS.gene068349.t1 | AT4G33000 | 57.732 | 194 | 82 | 0 | 43 | 236 | 63 | 256 | 1.07e-74 | 227 |
| MS.gene068349.t1 | AT5G47100 | 56.316 | 190 | 83 | 0 | 47 | 236 | 21 | 210 | 1.03e-73 | 223 |
| MS.gene068349.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.95e-73 | 223 |
| MS.gene068349.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.95e-73 | 223 |
| MS.gene068349.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 42 | 236 | 16 | 210 | 1.95e-73 | 223 |
| MS.gene068349.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 2.66e-73 | 223 |
| MS.gene068349.t1 | AT5G24270 | 62.733 | 161 | 60 | 0 | 76 | 236 | 7 | 167 | 6.40e-73 | 220 |
| MS.gene068349.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 3.76e-72 | 219 |
| MS.gene068349.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 43 | 237 | 32 | 226 | 3.76e-72 | 219 |
| MS.gene068349.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 43 | 237 | 32 | 230 | 3.58e-71 | 217 |
| MS.gene068349.t1 | AT1G64480 | 60.452 | 177 | 70 | 0 | 42 | 218 | 20 | 196 | 7.06e-71 | 215 |
| MS.gene068349.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 42 | 222 | 16 | 196 | 7.79e-66 | 204 |
| MS.gene068349.t1 | AT4G01420 | 49.246 | 199 | 101 | 0 | 31 | 229 | 4 | 202 | 1.05e-63 | 197 |
| MS.gene068349.t1 | AT4G16350 | 52.151 | 186 | 85 | 1 | 47 | 232 | 34 | 215 | 4.05e-62 | 194 |
| MS.gene068349.t1 | AT4G16350 | 52.151 | 186 | 85 | 1 | 47 | 232 | 34 | 215 | 4.05e-62 | 194 |
| MS.gene068349.t1 | AT4G01420 | 49.468 | 188 | 95 | 0 | 31 | 218 | 4 | 191 | 6.11e-60 | 187 |
| MS.gene068349.t1 | AT4G17615 | 54.140 | 157 | 72 | 0 | 80 | 236 | 12 | 168 | 1.11e-59 | 186 |
| MS.gene068349.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 61 | 237 | 25 | 214 | 1.58e-55 | 177 |
| MS.gene068349.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 47 | 184 | 21 | 158 | 6.65e-48 | 156 |
| MS.gene068349.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 43 | 186 | 53 | 196 | 1.17e-47 | 157 |
| MS.gene068349.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 1.96e-47 | 155 |
| MS.gene068349.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 43 | 182 | 53 | 192 | 1.96e-47 | 155 |
| MS.gene068349.t1 | AT4G33000 | 55.435 | 92 | 41 | 0 | 43 | 134 | 53 | 144 | 1.92e-25 | 97.8 |
Find 37 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.3:-66564318 | None:intergenic |
| CTTCAGAACAAGAATTATTA+AGG | 0.292998 | 8.3:-66562968 | None:intergenic |
| TTCTGCGTTCAGCATAAAAC+TGG | 0.307181 | 8.3:-66565034 | None:intergenic |
| GGAGATGGTGTTGATGGTTT+TGG | 0.329380 | 8.3:+66564642 | MS.gene068349:CDS |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.3:-66564272 | None:intergenic |
| AACAACGGCCATATAGAGTT+TGG | 0.408503 | 8.3:+66564264 | MS.gene068349:CDS |
| GGCGAATTTATCAGATCCTT+GGG | 0.409624 | 8.3:+66564285 | MS.gene068349:CDS |
| TTATATGACTTGAGGCATAC+TGG | 0.414238 | 8.3:+66564506 | MS.gene068349:CDS |
| TGGCGAATTTATCAGATCCT+TGG | 0.418944 | 8.3:+66564284 | MS.gene068349:CDS |
| GTTGAAGGAGATGGTGTTGA+TGG | 0.420723 | 8.3:+66564636 | MS.gene068349:intron |
| AAACTACGAGTATGATTCTT+CGG | 0.432593 | 8.3:-66565058 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.3:-66564889 | None:intergenic |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.3:-66562916 | None:intergenic |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.3:-66564916 | None:intergenic |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.3:+66563577 | MS.gene068349:CDS |
| GCGAAACCTCTTTGTGGATA+GGG | 0.504445 | 8.3:+66563829 | MS.gene068349:CDS |
| AAAAGTAGCAGAAAATATCA+TGG | 0.516359 | 8.3:+66562887 | MS.gene068349:CDS |
| TTTGGTTCTCTCTGATGATG+TGG | 0.519964 | 8.3:+66564675 | MS.gene068349:CDS |
| AAACAAGCGAAACCTCTTTG+TGG | 0.525654 | 8.3:+66563823 | MS.gene068349:CDS |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | 8.3:+66564817 | MS.gene068349:CDS |
| GAAGAATGGAGTGAATATGT+TGG | 0.530325 | 8.3:+66564859 | MS.gene068349:CDS |
| GTAGCAGAAAATATCATGGA+TGG | 0.537395 | 8.3:+66562891 | MS.gene068349:CDS |
| AGCGAAACCTCTTTGTGGAT+AGG | 0.555448 | 8.3:+66563828 | MS.gene068349:CDS |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8.3:+66564498 | MS.gene068349:CDS |
| ATGGATGGATCCTGTGAAGT+TGG | 0.567272 | 8.3:+66562906 | MS.gene068349:CDS |
| AAATTTACAGTTGAAGGAGA+TGG | 0.569253 | 8.3:+66564627 | MS.gene068349:intron |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.3:+66563562 | MS.gene068349:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.3:-66563001 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.3:+66564696 | MS.gene068349:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.615893 | 8.3:-66563835 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.3:+66564690 | MS.gene068349:CDS |
| GAAACAGACACAAAAGGTGA+CGG | 0.637440 | 8.3:+66564823 | MS.gene068349:CDS |
| TCTGCGTTCAGCATAAAACT+GGG | 0.644374 | 8.3:-66565033 | None:intergenic |
| CTCTTCGATGTCAATAACAA+CGG | 0.649512 | 8.3:+66564249 | MS.gene068349:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.3:+66563565 | MS.gene068349:intron |
| TGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.3:+66564526 | MS.gene068349:CDS |
| TTTAGGATGAAAGATGCCCA+AGG | 0.697078 | 8.3:-66564301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAACATGAAA+AGG | + | chr8.3:66563109-66563128 | MS.gene068349:intron | 10.0% |
| !!! | ATCACTTTATAAATTTTATA+AGG | + | chr8.3:66564750-66564769 | MS.gene068349:intron | 10.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.3:66563230-66563249 | MS.gene068349:intron | 15.0% |
| !! | ACAAAAAAAAAAACATGAAA+AGG | - | chr8.3:66563041-66563060 | None:intergenic | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | - | chr8.3:66563209-66563228 | None:intergenic | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.3:66563231-66563250 | MS.gene068349:intron | 15.0% |
| !!! | AAAGTTTCTTATATATGTTT+TGG | + | chr8.3:66564773-66564792 | MS.gene068349:intron | 15.0% |
| !!! | AAGTTTCTTATATATGTTTT+GGG | + | chr8.3:66564774-66564793 | MS.gene068349:intron | 15.0% |
| !!! | AATTTTTGATTCTAATTTCA+GGG | + | chr8.3:66564993-66565012 | MS.gene068349:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.3:66564919-66564938 | None:intergenic | 15.0% |
| !! | ATAAACAAGTTAAATTTCCA+AGG | - | chr8.3:66563066-66563085 | None:intergenic | 20.0% |
| !! | ATGTAAGAAATATAAGTCAT+TGG | + | chr8.3:66564347-66564366 | MS.gene068349:intron | 20.0% |
| !! | TATGCATATATAAGTCATTT+GGG | + | chr8.3:66564419-66564438 | MS.gene068349:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.3:66563232-66563251 | MS.gene068349:intron | 20.0% |
| !! | TTATGCATATATAAGTCATT+TGG | + | chr8.3:66564418-66564437 | MS.gene068349:intron | 20.0% |
| !!! | AGTTTCTTATATATGTTTTG+GGG | + | chr8.3:66564775-66564794 | MS.gene068349:intron | 20.0% |
| !!! | CAATTTTTGATTCTAATTTC+AGG | + | chr8.3:66564992-66565011 | MS.gene068349:intron | 20.0% |
| !!! | TGACAATTGTTTAAATGTTT+TGG | + | chr8.3:66564595-66564614 | MS.gene068349:intron | 20.0% |
| ! | AAAAGTAGCAGAAAATATCA+TGG | + | chr8.3:66562887-66562906 | MS.gene068349:CDS | 25.0% |
| ! | AAACACTTGTGAAACTATTT+GGG | + | chr8.3:66563312-66563331 | MS.gene068349:intron | 25.0% |
| ! | AAATAGTTTCACAAGTGTTT+AGG | - | chr8.3:66563312-66563331 | None:intergenic | 25.0% |
| ! | ACATGAAAATTTACAGTTGA+AGG | + | chr8.3:66564621-66564640 | MS.gene068349:intron | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | + | chr8.3:66564498-66564517 | MS.gene068349:CDS | 25.0% |
| ! | CTTCAGAACAAGAATTATTA+AGG | - | chr8.3:66562971-66562990 | None:intergenic | 25.0% |
| ! | GAAATAAGCATGTAAGTATT+TGG | + | chr8.3:66563994-66564013 | MS.gene068349:intron | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | + | chr8.3:66563158-66563177 | MS.gene068349:intron | 25.0% |
| ! | TAAACACTTGTGAAACTATT+TGG | + | chr8.3:66563311-66563330 | MS.gene068349:intron | 25.0% |
| ! | TATTCATATACAATTGGTGA+TGG | - | chr8.3:66563511-66563530 | None:intergenic | 25.0% |
| ! | TCGTGGTAAAAATTGAATTT+GGG | - | chr8.3:66564157-66564176 | None:intergenic | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.3:66563769-66563788 | MS.gene068349:intron | 25.0% |
| ! | TTCGTGGTAAAAATTGAATT+TGG | - | chr8.3:66564158-66564177 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.3:66563631-66563650 | MS.gene068349:CDS | 25.0% |
| !! | GATAATTTCATGGATTACTT+TGG | + | chr8.3:66563168-66563187 | MS.gene068349:intron | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.3:66562948-66562967 | None:intergenic | 25.0% |
| !!! | GTTTCTTATATATGTTTTGG+GGG | + | chr8.3:66564776-66564795 | MS.gene068349:intron | 25.0% |
| !!! | TGTTTTTTTTTTTGTTGCCT+TGG | + | chr8.3:66563046-66563065 | MS.gene068349:intron | 25.0% |
| !!! | TTTCTTATATATGTTTTGGG+GGG | + | chr8.3:66564777-66564796 | MS.gene068349:intron | 25.0% |
| AAATTTACAGTTGAAGGAGA+TGG | + | chr8.3:66564627-66564646 | MS.gene068349:intron | 30.0% | |
| AGCAGAGTTATTGTGAAAAA+TGG | + | chr8.3:66563617-66563636 | MS.gene068349:CDS | 30.0% | |
| ATCCAAACAGAACCTTAAAT+TGG | + | chr8.3:66563433-66563452 | MS.gene068349:intron | 30.0% | |
| ATCGGATGTGAATAAAAAAG+AGG | - | chr8.3:66564129-66564148 | None:intergenic | 30.0% | |
| GGTAAAAATTGAATTTGGGA+TGG | - | chr8.3:66564153-66564172 | None:intergenic | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.3:66564275-66564294 | None:intergenic | 30.0% | |
| TGTTTGCATAAACGAAAACA+CGG | - | chr8.3:66563470-66563489 | None:intergenic | 30.0% | |
| TTGTTAGGAAGAGCTTATTT+GGG | + | chr8.3:66563961-66563980 | MS.gene068349:intron | 30.0% | |
| ! | AACCAATTTAAGGTTCTGTT+TGG | - | chr8.3:66563438-66563457 | None:intergenic | 30.0% |
| ! | AATTGAATTTGGGATGGAAT+CGG | - | chr8.3:66564147-66564166 | None:intergenic | 30.0% |
| ! | GAAAAATTGACTTCGAAGAA+TGG | + | chr8.3:66564845-66564864 | MS.gene068349:CDS | 30.0% |
| ! | TTTCTAGAAACAGACACAAA+AGG | + | chr8.3:66564817-66564836 | MS.gene068349:CDS | 30.0% |
| !! | ATTATCAACACTTGTTTTCG+TGG | - | chr8.3:66564174-66564193 | None:intergenic | 30.0% |
| !! | CACTTTGCTCTTTTTAGAAA+CGG | + | chr8.3:66563800-66563819 | MS.gene068349:CDS | 30.0% |
| !! | CATATTATTTTGTCTGCTTG+AGG | - | chr8.3:66564330-66564349 | None:intergenic | 30.0% |
| !! | GGAAGCTTTAGATAATTTCA+TGG | + | chr8.3:66563130-66563149 | MS.gene068349:intron | 30.0% |
| AACAACTTCTGAATGGCATT+TGG | - | chr8.3:66563946-66563965 | None:intergenic | 35.0% | |
| AAGAGGATGAAGAGAATGAA+CGG | - | chr8.3:66564112-66564131 | None:intergenic | 35.0% | |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.3:66563265-66563284 | None:intergenic | 35.0% | |
| AATGCCATTCAGAAGTTGTT+AGG | + | chr8.3:66563946-66563965 | MS.gene068349:intron | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.3:66563684-66563703 | MS.gene068349:intron | 35.0% | |
| AGAGAAGAGTTTCAGAACAA+TGG | - | chr8.3:66563538-66563557 | None:intergenic | 35.0% | |
| CTCTTCGATGTCAATAACAA+CGG | + | chr8.3:66564249-66564268 | MS.gene068349:CDS | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.3:66564960-66564979 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.3:66564859-66564878 | MS.gene068349:CDS | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.3:66563020-66563039 | None:intergenic | 35.0% | |
| GGACGCTATTCATATACAAT+TGG | - | chr8.3:66563517-66563536 | None:intergenic | 35.0% | |
| GGTGGAAATGAACCAATTTA+AGG | - | chr8.3:66563448-66563467 | None:intergenic | 35.0% | |
| GTAGCAGAAAATATCATGGA+TGG | + | chr8.3:66562891-66562910 | MS.gene068349:CDS | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.3:66564892-66564911 | None:intergenic | 35.0% | |
| GTTGTTAGGAAGAGCTTATT+TGG | + | chr8.3:66563960-66563979 | MS.gene068349:intron | 35.0% | |
| GTTTGCATAAACGAAAACAC+GGG | - | chr8.3:66563469-66563488 | None:intergenic | 35.0% | |
| TATATTGTACGAAAGACCAC+AGG | - | chr8.3:66564560-66564579 | None:intergenic | 35.0% | |
| TCACCACGTAAAATTCTTCT+TGG | + | chr8.3:66564469-66564488 | MS.gene068349:intron | 35.0% | |
| TCTTCCTAACAACTTCTGAA+TGG | - | chr8.3:66563953-66563972 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.3:66564690-66564709 | MS.gene068349:CDS | 35.0% | |
| TTAGAGCTAACAATCAGTTC+TGG | + | chr8.3:66563387-66563406 | MS.gene068349:intron | 35.0% | |
| TTATATGACTTGAGGCATAC+TGG | + | chr8.3:66564506-66564525 | MS.gene068349:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.3:66563259-66563278 | MS.gene068349:intron | 35.0% |
| !! | CATATACAATTGGTGATGGA+TGG | - | chr8.3:66563507-66563526 | None:intergenic | 35.0% |
| !!! | CATGGATTACTTTGGTTTTG+TGG | + | chr8.3:66563176-66563195 | MS.gene068349:intron | 35.0% |
| !!! | GGCATTTGGCATAAGTTTTT+TGG | - | chr8.3:66563932-66563951 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTTGAATCTGATT+TGG | + | chr8.3:66564657-66564676 | MS.gene068349:CDS | 35.0% |
| AAACAAGCGAAACCTCTTTG+TGG | + | chr8.3:66563823-66563842 | MS.gene068349:CDS | 40.0% | |
| AACAACGGCCATATAGAGTT+TGG | + | chr8.3:66564264-66564283 | MS.gene068349:CDS | 40.0% | |
| AGAGGATGAAGAGAATGAAC+GGG | - | chr8.3:66564111-66564130 | None:intergenic | 40.0% | |
| AGATGATCAACATCCTGGAA+TGG | - | chr8.3:66564399-66564418 | None:intergenic | 40.0% | |
| AGCTGTTTGTTTACCATTCC+AGG | + | chr8.3:66564383-66564402 | MS.gene068349:intron | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.3:66562919-66562938 | None:intergenic | 40.0% | |
| GAAACAGACACAAAAGGTGA+CGG | + | chr8.3:66564823-66564842 | MS.gene068349:CDS | 40.0% | |
| GAAGAGATCAAACATCTGCA+TGG | - | chr8.3:66564235-66564254 | None:intergenic | 40.0% | |
| GCATAAGATGATCAACATCC+TGG | - | chr8.3:66564404-66564423 | None:intergenic | 40.0% | |
| GGCGAATTTATCAGATCCTT+GGG | + | chr8.3:66564285-66564304 | MS.gene068349:CDS | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.3:66564696-66564715 | MS.gene068349:CDS | 40.0% | |
| TCTGCGTTCAGCATAAAACT+GGG | - | chr8.3:66565036-66565055 | None:intergenic | 40.0% | |
| TGGCGAATTTATCAGATCCT+TGG | + | chr8.3:66564284-66564303 | MS.gene068349:CDS | 40.0% | |
| TTCTGCGTTCAGCATAAAAC+TGG | - | chr8.3:66565037-66565056 | None:intergenic | 40.0% | |
| ! | CTGCCAAGAAGAATTTTACG+TGG | - | chr8.3:66564475-66564494 | None:intergenic | 40.0% |
| ! | TTTAGGATGAAAGATGCCCA+AGG | - | chr8.3:66564304-66564323 | None:intergenic | 40.0% |
| !! | TTTGGTTCTCTCTGATGATG+TGG | + | chr8.3:66564675-66564694 | MS.gene068349:CDS | 40.0% |
| AGCGAAACCTCTTTGTGGAT+AGG | + | chr8.3:66563828-66563847 | MS.gene068349:CDS | 45.0% | |
| AGGGGTTGCATACCATCTTA+AGG | + | chr8.3:66563250-66563269 | MS.gene068349:intron | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.3:66562906-66562925 | MS.gene068349:CDS | 45.0% | |
| CGAAGAGGTAAATACTCCTG+TGG | + | chr8.3:66564541-66564560 | MS.gene068349:intron | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.3:66563577-66563596 | MS.gene068349:CDS | 45.0% | |
| GCGAAACCTCTTTGTGGATA+GGG | + | chr8.3:66563829-66563848 | MS.gene068349:CDS | 45.0% | |
| GGGGTTGCATACCATCTTAA+GGG | + | chr8.3:66563251-66563270 | MS.gene068349:intron | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.3:66563004-66563023 | None:intergenic | 45.0% | |
| TGCATAAACGAAAACACGGG+TGG | - | chr8.3:66563466-66563485 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.3:66563838-66563857 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.3:66564321-66564340 | None:intergenic | 45.0% | |
| ! | GTTGAAGGAGATGGTGTTGA+TGG | + | chr8.3:66564636-66564655 | MS.gene068349:intron | 45.0% |
| !!! | GGAGATGGTGTTGATGGTTT+TGG | + | chr8.3:66564642-66564661 | MS.gene068349:CDS | 45.0% |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.3:66563565-66563584 | MS.gene068349:intron | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.3:66563562-66563581 | MS.gene068349:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.3:66563565-66563584 | None:intergenic | 50.0% | |
| TGGTTACATTGAGCGCGAAG+AGG | + | chr8.3:66564526-66564545 | MS.gene068349:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66562864 | 66565077 | 66562864 | ID=MS.gene068349 |
| chr8.3 | mRNA | 66562864 | 66565077 | 66562864 | ID=MS.gene068349.t1;Parent=MS.gene068349 |
| chr8.3 | exon | 66562864 | 66563020 | 66562864 | ID=MS.gene068349.t1.exon1;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66562864 | 66563020 | 66562864 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66563570 | 66563652 | 66563570 | ID=MS.gene068349.t1.exon2;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66563570 | 66563652 | 66563570 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66563791 | 66563850 | 66563791 | ID=MS.gene068349.t1.exon3;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66563791 | 66563850 | 66563791 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66564240 | 66564348 | 66564240 | ID=MS.gene068349.t1.exon4;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66564240 | 66564348 | 66564240 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66564495 | 66564547 | 66564495 | ID=MS.gene068349.t1.exon5;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66564495 | 66564547 | 66564495 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66564637 | 66564717 | 66564637 | ID=MS.gene068349.t1.exon6;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66564637 | 66564717 | 66564637 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66564814 | 66564926 | 66564814 | ID=MS.gene068349.t1.exon7;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66564814 | 66564926 | 66564814 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| chr8.3 | exon | 66565014 | 66565077 | 66565014 | ID=MS.gene068349.t1.exon8;Parent=MS.gene068349.t1 |
| chr8.3 | CDS | 66565014 | 66565077 | 66565014 | ID=cds.MS.gene068349.t1;Parent=MS.gene068349.t1 |
| Gene Sequence |
| Protein sequence |
