Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06887.t1 | XP_003602285.1 | 100 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 5.80E-56 | 226.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06887.t1 | Q9T096 | 81.9 | 105 | 19 | 0 | 1 | 105 | 1 | 105 | 1.2e-46 | 186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06887.t1 | G7J7H5 | 100.0 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 4.2e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06887 | MS.gene71872 | PPI |
| MS.gene059765 | MS.gene06887 | PPI |
| MS.gene06887 | MS.gene58367 | PPI |
| MS.gene06887 | MS.gene69238 | PPI |
| MS.gene06887 | MS.gene057330 | PPI |
| MS.gene060686 | MS.gene06887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06887.t1 | MTR_3g091840 | 100.000 | 105 | 0 | 0 | 1 | 105 | 1 | 105 | 4.08e-77 | 222 |
| MS.gene06887.t1 | MTR_8g027255 | 67.619 | 105 | 34 | 0 | 1 | 105 | 1 | 105 | 1.35e-50 | 155 |
| MS.gene06887.t1 | MTR_1g077750 | 67.000 | 100 | 29 | 1 | 1 | 100 | 1 | 96 | 4.11e-46 | 144 |
| MS.gene06887.t1 | MTR_2g078670 | 55.789 | 95 | 42 | 0 | 8 | 102 | 12 | 106 | 5.62e-35 | 116 |
| MS.gene06887.t1 | MTR_3g070330 | 52.174 | 92 | 44 | 0 | 8 | 99 | 35 | 126 | 1.06e-33 | 113 |
| MS.gene06887.t1 | MTR_5g082490 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 1.72e-33 | 113 |
| MS.gene06887.t1 | MTR_3g070330 | 51.064 | 94 | 46 | 0 | 8 | 101 | 35 | 128 | 2.52e-33 | 113 |
| MS.gene06887.t1 | MTR_7g068250 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 9.93e-33 | 110 |
| MS.gene06887.t1 | MTR_8g058785 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 3.92e-31 | 107 |
| MS.gene06887.t1 | MTR_8g061270 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 3.92e-31 | 107 |
| MS.gene06887.t1 | MTR_4g088505 | 46.316 | 95 | 51 | 0 | 8 | 102 | 12 | 106 | 8.48e-28 | 98.6 |
| MS.gene06887.t1 | MTR_1g077760 | 67.857 | 56 | 18 | 0 | 44 | 99 | 1 | 56 | 7.68e-22 | 83.6 |
| MS.gene06887.t1 | MTR_4g088505 | 43.056 | 72 | 41 | 0 | 8 | 79 | 12 | 83 | 8.85e-18 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06887.t1 | AT4G27745 | 81.905 | 105 | 19 | 0 | 1 | 105 | 1 | 105 | 3.04e-62 | 185 |
| MS.gene06887.t1 | AT4G27745 | 81.905 | 105 | 19 | 0 | 1 | 105 | 1 | 105 | 3.04e-62 | 185 |
| MS.gene06887.t1 | AT4G27745 | 81.905 | 105 | 19 | 0 | 1 | 105 | 1 | 105 | 3.04e-62 | 185 |
| MS.gene06887.t1 | AT4G27745 | 81.905 | 105 | 19 | 0 | 1 | 105 | 1 | 105 | 3.04e-62 | 185 |
| MS.gene06887.t1 | AT5G53940 | 51.546 | 97 | 47 | 0 | 8 | 104 | 12 | 108 | 3.77e-34 | 114 |
| MS.gene06887.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 3.82e-34 | 114 |
| MS.gene06887.t1 | AT4G27740 | 54.839 | 93 | 42 | 0 | 10 | 102 | 10 | 102 | 3.86e-34 | 114 |
| MS.gene06887.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 45 | 138 | 5.73e-34 | 115 |
| MS.gene06887.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 14 | 102 | 9.43e-34 | 113 |
| MS.gene06887.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 47 | 135 | 1.32e-33 | 113 |
| MS.gene06887.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 2.86e-33 | 112 |
| MS.gene06887.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 2.86e-33 | 112 |
| MS.gene06887.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 2.86e-33 | 112 |
| MS.gene06887.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 8.39e-33 | 111 |
| MS.gene06887.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 8.39e-33 | 111 |
| MS.gene06887.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 1.68e-32 | 109 |
| MS.gene06887.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 1.68e-32 | 109 |
| MS.gene06887.t1 | AT2G40110 | 48.936 | 94 | 48 | 0 | 8 | 101 | 12 | 105 | 2.08e-31 | 107 |
| MS.gene06887.t1 | AT2G40110 | 48.352 | 91 | 47 | 0 | 8 | 98 | 12 | 102 | 6.87e-31 | 105 |
| MS.gene06887.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.26e-21 | 82.0 |
| MS.gene06887.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.26e-21 | 82.0 |
Find 23 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATGCCTGTCTTCTTT+TGG | 0.254022 | 3.2:+77349387 | None:intergenic |
| TGGTGATTGTCGTGAAGTGC+TGG | 0.372228 | 3.2:-77349331 | MS.gene06887:CDS |
| TTGGGTTACCTGAAAAGCCT+TGG | 0.462037 | 3.2:+77351286 | None:intergenic |
| GAAGTACGAAAGAGCGTATG+AGG | 0.502168 | 3.2:-77349304 | MS.gene06887:CDS |
| TCATGATGATATTATTTCCA+AGG | 0.502878 | 3.2:-77351303 | MS.gene06887:CDS |
| GAAGACAGGCATCTCTTGAC+TGG | 0.509264 | 3.2:-77349381 | MS.gene06887:CDS |
| CAGTGACAACATTCATTGCA+TGG | 0.547511 | 3.2:+77349412 | None:intergenic |
| CATGCAATGAATGTTGTCAC+TGG | 0.550116 | 3.2:-77349411 | MS.gene06887:CDS |
| ATTGTCGTGAAGTGCTGGGT+TGG | 0.550480 | 3.2:-77349326 | MS.gene06887:CDS |
| CATTGCATGGGAAAACAGAA+AGG | 0.570564 | 3.2:+77349425 | None:intergenic |
| TCACTGGGCCAAAAGAAGAC+AGG | 0.572382 | 3.2:-77349395 | MS.gene06887:CDS |
| GGTGATTGTCGTGAAGTGCT+GGG | 0.578151 | 3.2:-77349330 | MS.gene06887:CDS |
| CATGGGAAAACAGAAAGGCT+CGG | 0.593139 | 3.2:+77349430 | None:intergenic |
| AGTGACAACATTCATTGCAT+GGG | 0.597466 | 3.2:+77349413 | None:intergenic |
| TGAGGCGTCCCAGAAGTACA+AGG | 0.604854 | 3.2:-77349286 | MS.gene06887:CDS |
| GCGTCCCAGAAGTACAAGGA+AGG | 0.640509 | 3.2:-77349282 | MS.gene06887:CDS |
| ATGCAATGAATGTTGTCACT+GGG | 0.665460 | 3.2:-77349410 | MS.gene06887:CDS |
| AAACATCGGCAACAGTGTGG+AGG | 0.669170 | 3.2:+77349358 | None:intergenic |
| TATCATCATGAAGTGAAACA+TGG | 0.670134 | 3.2:+77351315 | None:intergenic |
| TTACAGCAGCAGTACAAGCG+AGG | 0.670520 | 3.2:+77351347 | None:intergenic |
| ACAATCACCACAGTAAACAT+CGG | 0.673082 | 3.2:+77349344 | None:intergenic |
| AGTAAACATCGGCAACAGTG+TGG | 0.687539 | 3.2:+77349355 | None:intergenic |
| ACTGTTGCCGATGTTTACTG+TGG | 0.707487 | 3.2:-77349351 | MS.gene06887:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGGAAATAAT+TGG | + | chr3.2:77349341-77349360 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGGAAATAATT+GGG | + | chr3.2:77349340-77349359 | None:intergenic | 10.0% |
| !! | GTAATATTATGAAATAAGTT+TGG | + | chr3.2:77350217-77350236 | None:intergenic | 15.0% |
| !!! | ATTACTTTTACTAATAAAAC+AGG | + | chr3.2:77350839-77350858 | None:intergenic | 15.0% |
| !!! | GTAATTTTTAAAATCAAACT+TGG | + | chr3.2:77349463-77349482 | None:intergenic | 15.0% |
| !!! | GTTTGTAAATAGAATTTTTA+AGG | - | chr3.2:77349641-77349660 | MS.gene06887:intron | 15.0% |
| !!! | TTTGTTTCTTAAATAGAAAA+TGG | - | chr3.2:77350921-77350940 | MS.gene06887:intron | 15.0% |
| !! | AACAAAAAAAGAAATGCTAA+AGG | + | chr3.2:77350898-77350917 | None:intergenic | 20.0% |
| !! | ATACTATAGTTTATATAGAG+AGG | + | chr3.2:77350567-77350586 | None:intergenic | 20.0% |
| !! | TACTATAGTTTATATAGAGA+GGG | + | chr3.2:77350566-77350585 | None:intergenic | 20.0% |
| !! | TGAAAAGTCAAAAATTGTTA+TGG | - | chr3.2:77351358-77351377 | MS.gene06887:CDS | 20.0% |
| !!! | TTTCATTAATTTTGTAACCA+GGG | - | chr3.2:77351143-77351162 | MS.gene06887:intron | 20.0% |
| !!! | TTTTCATTAATTTTGTAACC+AGG | - | chr3.2:77351142-77351161 | MS.gene06887:intron | 20.0% |
| ! | ACAATATCAGTAAATGATCA+AGG | + | chr3.2:77351123-77351142 | None:intergenic | 25.0% |
| ! | AGTGACACAATTAAACATAT+GGG | - | chr3.2:77349915-77349934 | MS.gene06887:intron | 25.0% |
| ! | ATATGAATAGGAGAATCAAA+AGG | - | chr3.2:77350045-77350064 | MS.gene06887:intron | 25.0% |
| ! | ATCATGCATATCTTGTATTT+AGG | - | chr3.2:77349599-77349618 | MS.gene06887:intron | 25.0% |
| ! | ATTAATTTCTCTTGCACTAT+AGG | - | chr3.2:77349436-77349455 | MS.gene06887:CDS | 25.0% |
| ! | CATCAAAAGAAGAATTTAGT+TGG | + | chr3.2:77351046-77351065 | None:intergenic | 25.0% |
| ! | CTCTTTAGTAAATAAAGCAA+TGG | - | chr3.2:77350763-77350782 | MS.gene06887:intron | 25.0% |
| ! | TATGAATAGGAGAATCAAAA+GGG | - | chr3.2:77350046-77350065 | MS.gene06887:intron | 25.0% |
| ! | TCATGATGATATTATTTCCA+AGG | - | chr3.2:77349302-77349321 | MS.gene06887:CDS | 25.0% |
| ! | TCATGCATATCTTGTATTTA+GGG | - | chr3.2:77349600-77349619 | MS.gene06887:intron | 25.0% |
| ! | TTATAAAAGGGGGAAATATT+GGG | - | chr3.2:77350791-77350810 | MS.gene06887:intron | 25.0% |
| ! | TTATGAACCTAGAAATTGTA+CGG | + | chr3.2:77350871-77350890 | None:intergenic | 25.0% |
| ! | TTCAATTGCAATTTCAAATG+AGG | + | chr3.2:77350664-77350683 | None:intergenic | 25.0% |
| !! | CTATATTTAGAATGAATGCA+CGG | - | chr3.2:77349667-77349686 | MS.gene06887:intron | 25.0% |
| !! | TCATTTGAAATTGCAATTGA+AGG | - | chr3.2:77350663-77350682 | MS.gene06887:intron | 25.0% |
| !!! | AGAGTTAATTTGTTAGGATA+TGG | - | chr3.2:77349982-77350001 | MS.gene06887:intron | 25.0% |
| !!! | GAGTTAATTTGTTAGGATAT+GGG | - | chr3.2:77349983-77350002 | MS.gene06887:intron | 25.0% |
| !!! | TTTTTTTTGTGTTAACCCTT+CGG | + | chr3.2:77350510-77350529 | None:intergenic | 25.0% |
| AACAGACTGCATATTCAATT+AGG | + | chr3.2:77350627-77350646 | None:intergenic | 30.0% | |
| AATCAGCAATGACATACAAT+AGG | + | chr3.2:77349419-77349438 | None:intergenic | 30.0% | |
| ACAGACTGCATATTCAATTA+GGG | + | chr3.2:77350626-77350645 | None:intergenic | 30.0% | |
| AGTTATCACAGTAGCAATTT+AGG | - | chr3.2:77349719-77349738 | MS.gene06887:intron | 30.0% | |
| ATAGGCATAAACATTCCAAA+TGG | - | chr3.2:77351007-77351026 | MS.gene06887:intron | 30.0% | |
| ATCGATACTGAATGTTTGAT+AGG | - | chr3.2:77350989-77351008 | MS.gene06887:intron | 30.0% | |
| ATTAACTCTACATCCTAACA+AGG | + | chr3.2:77349971-77349990 | None:intergenic | 30.0% | |
| CAGTGACACAATTAAACATA+TGG | - | chr3.2:77349914-77349933 | MS.gene06887:intron | 30.0% | |
| CATATCTTGTATTTAGGGAT+TGG | - | chr3.2:77349605-77349624 | MS.gene06887:intron | 30.0% | |
| CCAGATTATCATATATCAGA+TGG | - | chr3.2:77349533-77349552 | MS.gene06887:intron | 30.0% | |
| CCATCTGATATATGATAATC+TGG | + | chr3.2:77349536-77349555 | None:intergenic | 30.0% | |
| GGTACTTGGTTTAATTACAA+TGG | + | chr3.2:77350289-77350308 | None:intergenic | 30.0% | |
| GTTATAAAAGGGGGAAATAT+TGG | - | chr3.2:77350790-77350809 | MS.gene06887:intron | 30.0% | |
| TACAACAAGTTTCACATACA+CGG | + | chr3.2:77350310-77350329 | None:intergenic | 30.0% | |
| TATCATCATGAAGTGAAACA+TGG | + | chr3.2:77349293-77349312 | None:intergenic | 30.0% | |
| TGGATAAAATGGCAATTTGA+AGG | + | chr3.2:77350189-77350208 | None:intergenic | 30.0% | |
| TGTGAGTATCTCATATGAAT+AGG | - | chr3.2:77350033-77350052 | MS.gene06887:intron | 30.0% | |
| TTGTATTCCGTACAATTTCT+AGG | - | chr3.2:77350861-77350880 | MS.gene06887:intron | 30.0% | |
| ! | AGAATCTGAATTTGACTTCT+GGG | - | chr3.2:77350409-77350428 | MS.gene06887:intron | 30.0% |
| ! | ATGAAATAAGTTTGGCGTTT+TGG | + | chr3.2:77350209-77350228 | None:intergenic | 30.0% |
| ! | TATTATTTCCAAGGCTTTTC+AGG | - | chr3.2:77349311-77349330 | MS.gene06887:CDS | 30.0% |
| ! | TTAAGATTTTCGACCTTGTT+AGG | - | chr3.2:77349955-77349974 | MS.gene06887:intron | 30.0% |
| !! | AAACTTGTTGTAGCAACAAA+AGG | - | chr3.2:77350318-77350337 | MS.gene06887:intron | 30.0% |
| !! | GGATGTAGAGTTAATTTGTT+AGG | - | chr3.2:77349976-77349995 | MS.gene06887:intron | 30.0% |
| !! | TGTATCTGTAAAGTTGCTTT+TGG | - | chr3.2:77349858-77349877 | MS.gene06887:intron | 30.0% |
| !!! | AGTTGCTTTTGGTTGAAAAA+CGG | - | chr3.2:77349869-77349888 | MS.gene06887:intron | 30.0% |
| AACTGACATGTGTACTTGTA+CGG | + | chr3.2:77349703-77349722 | None:intergenic | 35.0% | |
| AATGGCATGAGTTAATACGA+GGG | + | chr3.2:77350271-77350290 | None:intergenic | 35.0% | |
| ACAATCACCACAGTAAACAT+CGG | + | chr3.2:77351264-77351283 | None:intergenic | 35.0% | |
| ACATATGGGATATGTTGAGA+AGG | - | chr3.2:77349929-77349948 | MS.gene06887:intron | 35.0% | |
| AGTGACAACATTCATTGCAT+GGG | + | chr3.2:77351195-77351214 | None:intergenic | 35.0% | |
| ATGCAATGAATGTTGTCACT+GGG | - | chr3.2:77351195-77351214 | MS.gene06887:intron | 35.0% | |
| CAATTAGGGGTTAAACATGA+GGG | + | chr3.2:77350612-77350631 | None:intergenic | 35.0% | |
| CAGACTGCATATTCAATTAG+GGG | + | chr3.2:77350625-77350644 | None:intergenic | 35.0% | |
| CAGCCAAATATCACAAAGAT+TGG | - | chr3.2:77350956-77350975 | MS.gene06887:intron | 35.0% | |
| CATCGTCTACAATGAATTTC+AGG | - | chr3.2:77349375-77349394 | MS.gene06887:CDS | 35.0% | |
| CTCGCAATTGATTAGAAGTT+AGG | + | chr3.2:77349509-77349528 | None:intergenic | 35.0% | |
| CTGCCAATCTTTGTGATATT+TGG | + | chr3.2:77350962-77350981 | None:intergenic | 35.0% | |
| GACAGGTTTACAATAGTAGT+TGG | + | chr3.2:77350544-77350563 | None:intergenic | 35.0% | |
| GCAATTTGAAGGAAATCTGA+CGG | + | chr3.2:77350178-77350197 | None:intergenic | 35.0% | |
| GGAGAAAACAACTATCCATT+TGG | + | chr3.2:77351025-77351044 | None:intergenic | 35.0% | |
| TAGTTTATATAGAGAGGGAC+AGG | + | chr3.2:77350561-77350580 | None:intergenic | 35.0% | |
| TATCAGATGGTTTCTGTTTG+TGG | - | chr3.2:77349546-77349565 | MS.gene06887:intron | 35.0% | |
| TCAATTAGGGGTTAAACATG+AGG | + | chr3.2:77350613-77350632 | None:intergenic | 35.0% | |
| ! | AAACGGCATTTTAAATGTGC+TGG | - | chr3.2:77349886-77349905 | MS.gene06887:intron | 35.0% |
| ! | AACGGCATTTTAAATGTGCT+GGG | - | chr3.2:77349887-77349906 | MS.gene06887:intron | 35.0% |
| ! | AATGGCTCTGTTATAAAAGG+GGG | - | chr3.2:77350781-77350800 | MS.gene06887:intron | 35.0% |
| ! | AGCAATGGCTCTGTTATAAA+AGG | - | chr3.2:77350778-77350797 | MS.gene06887:intron | 35.0% |
| ! | ATTTTCCTTCCTTGTACTTC+TGG | + | chr3.2:77351331-77351350 | None:intergenic | 35.0% |
| ! | CAATGGCTCTGTTATAAAAG+GGG | - | chr3.2:77350780-77350799 | MS.gene06887:intron | 35.0% |
| ! | GAGAATCTGAATTTGACTTC+TGG | - | chr3.2:77350408-77350427 | MS.gene06887:intron | 35.0% |
| ! | GCAATGGCTCTGTTATAAAA+GGG | - | chr3.2:77350779-77350798 | MS.gene06887:intron | 35.0% |
| ! | TGTTAGGATATGGGTTATGA+AGG | - | chr3.2:77349992-77350011 | MS.gene06887:intron | 35.0% |
| ! | TTTTCCTTCCTTGTACTTCT+GGG | + | chr3.2:77351330-77351349 | None:intergenic | 35.0% |
| ! | TTTTGTAACCAGGGAAGAAA+TGG | - | chr3.2:77351152-77351171 | MS.gene06887:intron | 35.0% |
| !! | GTTTGGCGTTTTGGATAAAA+TGG | + | chr3.2:77350200-77350219 | None:intergenic | 35.0% |
| AACAAATGACCGAGCTTAGT+TGG | - | chr3.2:77350353-77350372 | MS.gene06887:intron | 40.0% | |
| AGGGATGAGTTACAACACAA+GGG | + | chr3.2:77350252-77350271 | None:intergenic | 40.0% | |
| AGTTTCACATACACGGTACT+TGG | + | chr3.2:77350303-77350322 | None:intergenic | 40.0% | |
| CAATGGCATGAGTTAATACG+AGG | + | chr3.2:77350272-77350291 | None:intergenic | 40.0% | |
| CAGTGACAACATTCATTGCA+TGG | + | chr3.2:77351196-77351215 | None:intergenic | 40.0% | |
| CATGCAATGAATGTTGTCAC+TGG | - | chr3.2:77351194-77351213 | MS.gene06887:intron | 40.0% | |
| CATTGCATGGGAAAACAGAA+AGG | + | chr3.2:77351183-77351202 | None:intergenic | 40.0% | |
| GCAAGTTATAACTCATTCGC+AGG | + | chr3.2:77350151-77350170 | None:intergenic | 40.0% | |
| GCTCATTAACCAACTAAGCT+CGG | + | chr3.2:77350365-77350384 | None:intergenic | 40.0% | |
| GGTTTCTGTTTGTGGTACTA+GGG | - | chr3.2:77349554-77349573 | MS.gene06887:intron | 40.0% | |
| GTTGCGAGCTAAATAAAGTC+TGG | + | chr3.2:77350450-77350469 | None:intergenic | 40.0% | |
| TAAGCTCGGTCATTTGTTTG+CGG | + | chr3.2:77350351-77350370 | None:intergenic | 40.0% | |
| TCTCGCGAAAGATTCATCAT+TGG | + | chr3.2:77350392-77350411 | None:intergenic | 40.0% | |
| TGGTTTCTGTTTGTGGTACT+AGG | - | chr3.2:77349553-77349572 | MS.gene06887:intron | 40.0% | |
| TGTTAACCCTTCGGTTCTTA+GGG | + | chr3.2:77350501-77350520 | None:intergenic | 40.0% | |
| TTTGTCTGCAGAGAAAGTGA+CGG | - | chr3.2:77349776-77349795 | MS.gene06887:intron | 40.0% | |
| ! | AAGAGATGCCTGTCTTCTTT+TGG | + | chr3.2:77351221-77351240 | None:intergenic | 40.0% |
| ! | AGAATCAAAAGGGTACAGAG+GGG | - | chr3.2:77350056-77350075 | MS.gene06887:intron | 40.0% |
| ! | ATCTGAATTTGACTTCTGGG+TGG | - | chr3.2:77350412-77350431 | MS.gene06887:intron | 40.0% |
| ! | GAGAATCAAAAGGGTACAGA+GGG | - | chr3.2:77350055-77350074 | MS.gene06887:intron | 40.0% |
| !! | TGCCTCTAAAATCACAGTGA+CGG | + | chr3.2:77349827-77349846 | None:intergenic | 40.0% |
| ACTGTTGCCGATGTTTACTG+TGG | - | chr3.2:77351254-77351273 | MS.gene06887:intron | 45.0% | |
| AGTAAACATCGGCAACAGTG+TGG | + | chr3.2:77351253-77351272 | None:intergenic | 45.0% | |
| ATGAGGGATGCACTACAGAT+TGG | + | chr3.2:77350596-77350615 | None:intergenic | 45.0% | |
| CATGGGAAAACAGAAAGGCT+CGG | + | chr3.2:77351178-77351197 | None:intergenic | 45.0% | |
| CGCGAAAGATTCATCATTGG+TGG | + | chr3.2:77350389-77350408 | None:intergenic | 45.0% | |
| GAGGGATGAGTTACAACACA+AGG | + | chr3.2:77350253-77350272 | None:intergenic | 45.0% | |
| GTGTTAACCCTTCGGTTCTT+AGG | + | chr3.2:77350502-77350521 | None:intergenic | 45.0% | |
| GTTAACCCTTCGGTTCTTAG+GGG | + | chr3.2:77350500-77350519 | None:intergenic | 45.0% | |
| TGAGTTACAACACAAGGGAG+AGG | + | chr3.2:77350247-77350266 | None:intergenic | 45.0% | |
| TTGGGTTACCTGAAAAGCCT+TGG | + | chr3.2:77349322-77349341 | None:intergenic | 45.0% | |
| ! | GAAGTACGAAAGAGCGTATG+AGG | - | chr3.2:77351301-77351320 | MS.gene06887:CDS | 45.0% |
| ! | GACCGTCACTGTGATTTTAG+AGG | - | chr3.2:77349822-77349841 | MS.gene06887:intron | 45.0% |
| ! | GGAGAATCAAAAGGGTACAG+AGG | - | chr3.2:77350054-77350073 | MS.gene06887:intron | 45.0% |
| ! | TTTAGCTCGCAACCAAACTC+CGG | - | chr3.2:77350457-77350476 | MS.gene06887:intron | 45.0% |
| !! | TTAACAAAAAAAAAAAAAAA+TGG | + | chr3.2:77349351-77349370 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTTGTTA+AGG | - | chr3.2:77349350-77349369 | MS.gene06887:CDS | 5.0% |
| AAACATCGGCAACAGTGTGG+AGG | + | chr3.2:77351250-77351269 | None:intergenic | 50.0% | |
| GAAGACAGGCATCTCTTGAC+TGG | - | chr3.2:77351224-77351243 | MS.gene06887:intron | 50.0% | |
| TCACTGGGCCAAAAGAAGAC+AGG | - | chr3.2:77351210-77351229 | MS.gene06887:intron | 50.0% | |
| TGGTGATTGTCGTGAAGTGC+TGG | - | chr3.2:77351274-77351293 | MS.gene06887:intron | 50.0% | |
| TTACAGCAGCAGTACAAGCG+AGG | + | chr3.2:77349261-77349280 | None:intergenic | 50.0% | |
| ! | GGTGATTGTCGTGAAGTGCT+GGG | - | chr3.2:77351275-77351294 | MS.gene06887:intron | 50.0% |
| !! | ATTGTCGTGAAGTGCTGGGT+TGG | - | chr3.2:77351279-77351298 | MS.gene06887:intron | 50.0% |
| CAATCCACGCGCAACTCTTG+CGG | - | chr3.2:77350727-77350746 | MS.gene06887:intron | 55.0% | |
| CCTCTCCCCTAAGAACCGAA+GGG | - | chr3.2:77350492-77350511 | MS.gene06887:intron | 55.0% | |
| CCTTCGGTTCTTAGGGGAGA+GGG | + | chr3.2:77350494-77350513 | None:intergenic | 55.0% | |
| CTTCGGTTCTTAGGGGAGAG+GGG | + | chr3.2:77350493-77350512 | None:intergenic | 55.0% | |
| GGCGCTAGTATTCCGGAGTT+TGG | + | chr3.2:77350472-77350491 | None:intergenic | 55.0% | |
| ! | GCGTCCCAGAAGTACAAGGA+AGG | - | chr3.2:77351323-77351342 | MS.gene06887:CDS | 55.0% |
| ! | TGAGGCGTCCCAGAAGTACA+AGG | - | chr3.2:77351319-77351338 | MS.gene06887:CDS | 55.0% |
| AGGCTCGGCCATTTCTTCCC+TGG | + | chr3.2:77351163-77351182 | None:intergenic | 60.0% | |
| ATGACCGCAAGAGTTGCGCG+TGG | + | chr3.2:77350734-77350753 | None:intergenic | 60.0% | |
| CCCTCTCCCCTAAGAACCGA+AGG | - | chr3.2:77350491-77350510 | MS.gene06887:intron | 60.0% | |
| CCCTTCGGTTCTTAGGGGAG+AGG | + | chr3.2:77350495-77350514 | None:intergenic | 60.0% | |
| !! | GGAGAGGGGCGCTAGTATTC+CGG | + | chr3.2:77350479-77350498 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77349240 | 77351387 | 77349240 | ID=MS.gene06887 |
| chr3.2 | mRNA | 77349240 | 77351387 | 77349240 | ID=MS.gene06887.t1;Parent=MS.gene06887 |
| chr3.2 | exon | 77351295 | 77351387 | 77351295 | ID=MS.gene06887.t1.exon1;Parent=MS.gene06887.t1 |
| chr3.2 | CDS | 77351295 | 77351387 | 77351295 | ID=cds.MS.gene06887.t1;Parent=MS.gene06887.t1 |
| chr3.2 | exon | 77349240 | 77349463 | 77349240 | ID=MS.gene06887.t1.exon2;Parent=MS.gene06887.t1 |
| chr3.2 | CDS | 77349240 | 77349463 | 77349240 | ID=cds.MS.gene06887.t1;Parent=MS.gene06887.t1 |
| Gene Sequence |
| Protein sequence |
