Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06889.t1 | XP_003602285.1 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.40E-57 | 231.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06889.t1 | Q9T096 | 82.1 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 5.1e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06889.t1 | G7J7H5 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.7e-57 | 231.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057330 | MS.gene06889 | PPI |
| MS.gene58367 | MS.gene06889 | PPI |
| MS.gene060686 | MS.gene06889 | PPI |
| MS.gene71872 | MS.gene06889 | PPI |
| MS.gene059765 | MS.gene06889 | PPI |
| MS.gene69238 | MS.gene06889 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06889.t1 | MTR_3g091840 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 2.42e-78 | 225 |
| MS.gene06889.t1 | MTR_8g027255 | 67.619 | 105 | 34 | 0 | 1 | 105 | 1 | 105 | 1.81e-50 | 155 |
| MS.gene06889.t1 | MTR_1g077750 | 67.000 | 100 | 29 | 1 | 1 | 100 | 1 | 96 | 5.63e-46 | 144 |
| MS.gene06889.t1 | MTR_2g078670 | 55.789 | 95 | 42 | 0 | 8 | 102 | 12 | 106 | 7.19e-35 | 116 |
| MS.gene06889.t1 | MTR_3g070330 | 52.174 | 92 | 44 | 0 | 8 | 99 | 35 | 126 | 1.33e-33 | 113 |
| MS.gene06889.t1 | MTR_5g082490 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 2.20e-33 | 112 |
| MS.gene06889.t1 | MTR_3g070330 | 51.064 | 94 | 46 | 0 | 8 | 101 | 35 | 128 | 3.37e-33 | 113 |
| MS.gene06889.t1 | MTR_7g068250 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 1.80e-32 | 110 |
| MS.gene06889.t1 | MTR_8g058785 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene06889.t1 | MTR_8g061270 | 47.423 | 97 | 51 | 0 | 8 | 104 | 12 | 108 | 4.85e-31 | 107 |
| MS.gene06889.t1 | MTR_4g088505 | 46.316 | 95 | 51 | 0 | 8 | 102 | 12 | 106 | 1.44e-27 | 97.8 |
| MS.gene06889.t1 | MTR_1g077760 | 67.857 | 56 | 18 | 0 | 44 | 99 | 1 | 56 | 7.54e-22 | 83.6 |
| MS.gene06889.t1 | MTR_4g088505 | 43.056 | 72 | 41 | 0 | 8 | 79 | 12 | 83 | 1.11e-17 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06889.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06889.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06889.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06889.t1 | AT4G27745 | 82.075 | 106 | 19 | 0 | 1 | 106 | 1 | 106 | 1.53e-63 | 188 |
| MS.gene06889.t1 | AT5G53940 | 51.546 | 97 | 47 | 0 | 8 | 104 | 12 | 108 | 4.52e-34 | 114 |
| MS.gene06889.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 12 | 105 | 4.57e-34 | 114 |
| MS.gene06889.t1 | AT4G27740 | 54.839 | 93 | 42 | 0 | 10 | 102 | 10 | 102 | 5.10e-34 | 113 |
| MS.gene06889.t1 | AT3G11230 | 52.128 | 94 | 45 | 0 | 8 | 101 | 45 | 138 | 7.74e-34 | 115 |
| MS.gene06889.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 14 | 102 | 1.27e-33 | 112 |
| MS.gene06889.t1 | AT3G11230 | 53.933 | 89 | 41 | 0 | 10 | 98 | 47 | 135 | 1.74e-33 | 113 |
| MS.gene06889.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06889.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06889.t1 | AT3G08990 | 53.191 | 94 | 44 | 0 | 9 | 102 | 13 | 106 | 4.92e-33 | 112 |
| MS.gene06889.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene06889.t1 | AT3G55890 | 54.255 | 94 | 43 | 0 | 8 | 101 | 12 | 105 | 1.03e-32 | 110 |
| MS.gene06889.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene06889.t1 | AT3G55890 | 55.056 | 89 | 40 | 0 | 9 | 97 | 13 | 101 | 2.08e-32 | 109 |
| MS.gene06889.t1 | AT2G40110 | 48.936 | 94 | 48 | 0 | 8 | 101 | 12 | 105 | 2.90e-31 | 107 |
| MS.gene06889.t1 | AT2G40110 | 48.352 | 91 | 47 | 0 | 8 | 98 | 12 | 102 | 8.23e-31 | 105 |
| MS.gene06889.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
| MS.gene06889.t1 | AT2G40110 | 44.444 | 72 | 40 | 0 | 8 | 79 | 12 | 83 | 1.62e-21 | 81.6 |
Find 23 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGATGCCTGTCTTCTTT+TGG | 0.254022 | 3.2:+77339368 | None:intergenic |
| TGGTGATTGTCGTGAAGTGC+TGG | 0.372228 | 3.2:-77339312 | MS.gene06889:CDS |
| TTGGGTTACCTGAAAAGCCT+TGG | 0.462037 | 3.2:+77341264 | None:intergenic |
| GAAGTACGAAAGAGCGTATG+AGG | 0.502168 | 3.2:-77339285 | MS.gene06889:CDS |
| TCATGATGATATTATTTCCA+AGG | 0.502878 | 3.2:-77341281 | MS.gene06889:CDS |
| GAAGACAGGCATCTCTTGAC+TGG | 0.509264 | 3.2:-77339362 | MS.gene06889:CDS |
| CAGTGACAACATTCATTGCA+TGG | 0.547511 | 3.2:+77339393 | None:intergenic |
| CATGCAATGAATGTTGTCAC+TGG | 0.550116 | 3.2:-77339392 | MS.gene06889:CDS |
| ATTGTCGTGAAGTGCTGGGT+TGG | 0.550480 | 3.2:-77339307 | MS.gene06889:CDS |
| CATTGCATGGGAAAACAGAA+AGG | 0.570564 | 3.2:+77339406 | None:intergenic |
| TCACTGGGCCAAAAGAAGAC+AGG | 0.572382 | 3.2:-77339376 | MS.gene06889:CDS |
| GGTGATTGTCGTGAAGTGCT+GGG | 0.578151 | 3.2:-77339311 | MS.gene06889:CDS |
| CATGGGAAAACAGAAAGGCT+CGG | 0.593139 | 3.2:+77339411 | None:intergenic |
| AGTGACAACATTCATTGCAT+GGG | 0.597466 | 3.2:+77339394 | None:intergenic |
| TGAGGCGTCCCAGAAGTACA+AGG | 0.604854 | 3.2:-77339267 | MS.gene06889:CDS |
| GCGTCCCAGAAGTACAAGGA+AGG | 0.640509 | 3.2:-77339263 | MS.gene06889:CDS |
| ATGCAATGAATGTTGTCACT+GGG | 0.665460 | 3.2:-77339391 | MS.gene06889:CDS |
| AAACATCGGCAACAGTGTGG+AGG | 0.669170 | 3.2:+77339339 | None:intergenic |
| TATCATCATGAAGTGAAACA+TGG | 0.670134 | 3.2:+77341293 | None:intergenic |
| TTACAGCAGCAGTACAAGCG+AGG | 0.670520 | 3.2:+77341325 | None:intergenic |
| ACAATCACCACAGTAAACAT+CGG | 0.673082 | 3.2:+77339325 | None:intergenic |
| AGTAAACATCGGCAACAGTG+TGG | 0.687539 | 3.2:+77339336 | None:intergenic |
| ACTGTTGCCGATGTTTACTG+TGG | 0.707487 | 3.2:-77339332 | MS.gene06889:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATGGAAATAAT+TGG | + | chr3.2:77339318-77339337 | None:intergenic | 10.0% |
| !! | AAAAAAAAATGGAAATAATT+GGG | + | chr3.2:77339317-77339336 | None:intergenic | 10.0% |
| !! | CTTAACAAAAAAAAAAAAAA+TGG | + | chr3.2:77339328-77339347 | None:intergenic | 10.0% |
| !!! | CATTTTTTTTTTTTTTGTTA+AGG | - | chr3.2:77339326-77339345 | MS.gene06889:CDS | 10.0% |
| !! | GTAATATTATGAAATAAGTT+TGG | + | chr3.2:77340193-77340212 | None:intergenic | 15.0% |
| !!! | ATTACTTTTACTAATAAAAC+AGG | + | chr3.2:77340813-77340832 | None:intergenic | 15.0% |
| !!! | GTAATTTTTAAAATCAAACT+TGG | + | chr3.2:77339439-77339458 | None:intergenic | 15.0% |
| !!! | GTTTGTAAATAGAATTTTTA+AGG | - | chr3.2:77339617-77339636 | MS.gene06889:intron | 15.0% |
| !!! | TTTGTTTCTTAAATAGAAAA+TGG | - | chr3.2:77340895-77340914 | MS.gene06889:intron | 15.0% |
| !! | AACAAAAAAAGAAATGCTAA+AGG | + | chr3.2:77340872-77340891 | None:intergenic | 20.0% |
| !! | ATACTATAGTTTATATAGAG+AGG | + | chr3.2:77340542-77340561 | None:intergenic | 20.0% |
| !! | TACTATAGTTTATATAGAGA+GGG | + | chr3.2:77340541-77340560 | None:intergenic | 20.0% |
| !! | TGAAAAGTCAAAAATTGTTA+TGG | - | chr3.2:77341332-77341351 | MS.gene06889:CDS | 20.0% |
| !!! | TTTCATTAATTTTGTAACCA+GGG | - | chr3.2:77341117-77341136 | MS.gene06889:intron | 20.0% |
| !!! | TTTTCATTAATTTTGTAACC+AGG | - | chr3.2:77341116-77341135 | MS.gene06889:intron | 20.0% |
| ! | ACAATATCAGTAAATGATCA+AGG | + | chr3.2:77341097-77341116 | None:intergenic | 25.0% |
| ! | AGTGACACAATTAAACATAT+GGG | - | chr3.2:77339891-77339910 | MS.gene06889:intron | 25.0% |
| ! | ATATGAATAGGAGAATCAAA+AGG | - | chr3.2:77340021-77340040 | MS.gene06889:intron | 25.0% |
| ! | ATCATGCATATCTTGTATTT+AGG | - | chr3.2:77339575-77339594 | MS.gene06889:intron | 25.0% |
| ! | ATTAATTTCTCTTGCACTAT+AGG | - | chr3.2:77339412-77339431 | MS.gene06889:CDS | 25.0% |
| ! | CATCAAAAGAAGAATTTAGT+TGG | + | chr3.2:77341020-77341039 | None:intergenic | 25.0% |
| ! | CTCTTTAGTAAATAAAGCAA+TGG | - | chr3.2:77340738-77340757 | MS.gene06889:intron | 25.0% |
| ! | TATGAATAGGAGAATCAAAA+GGG | - | chr3.2:77340022-77340041 | MS.gene06889:intron | 25.0% |
| ! | TCATGATGATATTATTTCCA+AGG | - | chr3.2:77339279-77339298 | MS.gene06889:CDS | 25.0% |
| ! | TCATGCATATCTTGTATTTA+GGG | - | chr3.2:77339576-77339595 | MS.gene06889:intron | 25.0% |
| ! | TTATAAAAGGGGGAAATATT+GGG | - | chr3.2:77340766-77340785 | MS.gene06889:intron | 25.0% |
| ! | TTATGAACCTAGAAATTGTA+CGG | + | chr3.2:77340845-77340864 | None:intergenic | 25.0% |
| ! | TTCAATTGCAATTTCAAATG+AGG | + | chr3.2:77340639-77340658 | None:intergenic | 25.0% |
| !! | CTATATTTAGAATGAATGCA+CGG | - | chr3.2:77339643-77339662 | MS.gene06889:intron | 25.0% |
| !! | TCATTTGAAATTGCAATTGA+AGG | - | chr3.2:77340638-77340657 | MS.gene06889:intron | 25.0% |
| !!! | AGAGTTAATTTGTTAGGATA+TGG | - | chr3.2:77339958-77339977 | MS.gene06889:intron | 25.0% |
| !!! | GAGTTAATTTGTTAGGATAT+GGG | - | chr3.2:77339959-77339978 | MS.gene06889:intron | 25.0% |
| !!! | TTTTTTTTGTGTTAACCCTT+CGG | + | chr3.2:77340485-77340504 | None:intergenic | 25.0% |
| AACAGACTGCATATTCAATT+AGG | + | chr3.2:77340602-77340621 | None:intergenic | 30.0% | |
| AATCAGCAATGACATACAAT+AGG | + | chr3.2:77339395-77339414 | None:intergenic | 30.0% | |
| ACAGACTGCATATTCAATTA+GGG | + | chr3.2:77340601-77340620 | None:intergenic | 30.0% | |
| AGTTATCACAGTAGCAATTT+AGG | - | chr3.2:77339695-77339714 | MS.gene06889:intron | 30.0% | |
| ATAGGCATAAACATTCCAAA+TGG | - | chr3.2:77340981-77341000 | MS.gene06889:intron | 30.0% | |
| ATCGATACTGAATGTTTGAT+AGG | - | chr3.2:77340963-77340982 | MS.gene06889:intron | 30.0% | |
| ATTAACTCTACATCCTAACA+AGG | + | chr3.2:77339947-77339966 | None:intergenic | 30.0% | |
| CAAAAATTGTTATGGAGAAC+TGG | - | chr3.2:77341340-77341359 | MS.gene06889:CDS | 30.0% | |
| CAGTGACACAATTAAACATA+TGG | - | chr3.2:77339890-77339909 | MS.gene06889:intron | 30.0% | |
| CATATCTTGTATTTAGGGAT+TGG | - | chr3.2:77339581-77339600 | MS.gene06889:intron | 30.0% | |
| CCAGATTATCATATATCAGA+TGG | - | chr3.2:77339509-77339528 | MS.gene06889:intron | 30.0% | |
| CCATCTGATATATGATAATC+TGG | + | chr3.2:77339512-77339531 | None:intergenic | 30.0% | |
| GGTACTTGGTTTAATTACAA+TGG | + | chr3.2:77340264-77340283 | None:intergenic | 30.0% | |
| GTTATAAAAGGGGGAAATAT+TGG | - | chr3.2:77340765-77340784 | MS.gene06889:intron | 30.0% | |
| TACAACAAGTTTCACATACA+CGG | + | chr3.2:77340285-77340304 | None:intergenic | 30.0% | |
| TATCATCATGAAGTGAAACA+TGG | + | chr3.2:77339270-77339289 | None:intergenic | 30.0% | |
| TGGATAAAATGGCAATTTGA+AGG | + | chr3.2:77340165-77340184 | None:intergenic | 30.0% | |
| TGTGAGTATCTCATATGAAT+AGG | - | chr3.2:77340009-77340028 | MS.gene06889:intron | 30.0% | |
| TTGTATTCCGTACAATTTCT+AGG | - | chr3.2:77340835-77340854 | MS.gene06889:intron | 30.0% | |
| ! | AGAATCTGAATTTGACTTCT+GGG | - | chr3.2:77340384-77340403 | MS.gene06889:intron | 30.0% |
| ! | ATGAAATAAGTTTGGCGTTT+TGG | + | chr3.2:77340185-77340204 | None:intergenic | 30.0% |
| ! | TATTATTTCCAAGGCTTTTC+AGG | - | chr3.2:77339288-77339307 | MS.gene06889:CDS | 30.0% |
| ! | TTAAGATTTTCGACCTTGTT+AGG | - | chr3.2:77339931-77339950 | MS.gene06889:intron | 30.0% |
| !! | AAACTTGTTGTAGCAACAAA+AGG | - | chr3.2:77340293-77340312 | MS.gene06889:intron | 30.0% |
| !! | GGATGTAGAGTTAATTTGTT+AGG | - | chr3.2:77339952-77339971 | MS.gene06889:intron | 30.0% |
| !! | TGTATCTGTAAAGTTGCTTT+TGG | - | chr3.2:77339834-77339853 | MS.gene06889:intron | 30.0% |
| !!! | AGTTGCTTTTGGTTGAAAAA+CGG | - | chr3.2:77339845-77339864 | MS.gene06889:intron | 30.0% |
| AACTGACATGTGTACTTGTA+CGG | + | chr3.2:77339679-77339698 | None:intergenic | 35.0% | |
| ACAATCACCACAGTAAACAT+CGG | + | chr3.2:77341238-77341257 | None:intergenic | 35.0% | |
| ACATATGGGATATGTTGAGA+AGG | - | chr3.2:77339905-77339924 | MS.gene06889:intron | 35.0% | |
| AGTGACAACATTCATTGCAT+GGG | + | chr3.2:77341169-77341188 | None:intergenic | 35.0% | |
| ATGCAATGAATGTTGTCACT+GGG | - | chr3.2:77341169-77341188 | MS.gene06889:intron | 35.0% | |
| CAATTAGGGGTTAAACATGA+GGG | + | chr3.2:77340587-77340606 | None:intergenic | 35.0% | |
| CAGACTGCATATTCAATTAG+GGG | + | chr3.2:77340600-77340619 | None:intergenic | 35.0% | |
| CAGCCAAATATCACAAAGAT+TGG | - | chr3.2:77340930-77340949 | MS.gene06889:intron | 35.0% | |
| CATCGTCTACAATGAATTTC+AGG | - | chr3.2:77339351-77339370 | MS.gene06889:CDS | 35.0% | |
| CTCGCAATTGATTAGAAGTT+AGG | + | chr3.2:77339485-77339504 | None:intergenic | 35.0% | |
| CTGCCAATCTTTGTGATATT+TGG | + | chr3.2:77340936-77340955 | None:intergenic | 35.0% | |
| GACAGGTTTACAATAGTAGT+TGG | + | chr3.2:77340519-77340538 | None:intergenic | 35.0% | |
| GCAATTTGAAGGAAATCTGA+CGG | + | chr3.2:77340154-77340173 | None:intergenic | 35.0% | |
| GGAGAAAACAACTATCCATT+TGG | + | chr3.2:77340999-77341018 | None:intergenic | 35.0% | |
| TAGTTTATATAGAGAGGGAC+AGG | + | chr3.2:77340536-77340555 | None:intergenic | 35.0% | |
| TATCAGATGGTTTCTGTTTG+TGG | - | chr3.2:77339522-77339541 | MS.gene06889:intron | 35.0% | |
| TCAATTAGGGGTTAAACATG+AGG | + | chr3.2:77340588-77340607 | None:intergenic | 35.0% | |
| ! | AAACGGCATTTTAAATGTGC+TGG | - | chr3.2:77339862-77339881 | MS.gene06889:intron | 35.0% |
| ! | AACGGCATTTTAAATGTGCT+GGG | - | chr3.2:77339863-77339882 | MS.gene06889:intron | 35.0% |
| ! | AATGGCTCTGTTATAAAAGG+GGG | - | chr3.2:77340756-77340775 | MS.gene06889:intron | 35.0% |
| ! | AGCAATGGCTCTGTTATAAA+AGG | - | chr3.2:77340753-77340772 | MS.gene06889:intron | 35.0% |
| ! | ATTTTCCTTCCTTGTACTTC+TGG | + | chr3.2:77341305-77341324 | None:intergenic | 35.0% |
| ! | CAATGGCTCTGTTATAAAAG+GGG | - | chr3.2:77340755-77340774 | MS.gene06889:intron | 35.0% |
| ! | GAGAATCTGAATTTGACTTC+TGG | - | chr3.2:77340383-77340402 | MS.gene06889:intron | 35.0% |
| ! | GCAATGGCTCTGTTATAAAA+GGG | - | chr3.2:77340754-77340773 | MS.gene06889:intron | 35.0% |
| ! | TGTTAGGATATGGGTTATGA+AGG | - | chr3.2:77339968-77339987 | MS.gene06889:intron | 35.0% |
| ! | TTTTCCTTCCTTGTACTTCT+GGG | + | chr3.2:77341304-77341323 | None:intergenic | 35.0% |
| ! | TTTTGTAACCAGGGAAGAAA+TGG | - | chr3.2:77341126-77341145 | MS.gene06889:intron | 35.0% |
| !! | GTTTGGCGTTTTGGATAAAA+TGG | + | chr3.2:77340176-77340195 | None:intergenic | 35.0% |
| AACAAATGACCGAGCTTAGT+TGG | - | chr3.2:77340328-77340347 | MS.gene06889:intron | 40.0% | |
| AGTTTCACATACACGGTACT+TGG | + | chr3.2:77340278-77340297 | None:intergenic | 40.0% | |
| CAATGGCATGAGTTAATACG+AGG | + | chr3.2:77340247-77340266 | None:intergenic | 40.0% | |
| CAGTGACAACATTCATTGCA+TGG | + | chr3.2:77341170-77341189 | None:intergenic | 40.0% | |
| CATGCAATGAATGTTGTCAC+TGG | - | chr3.2:77341168-77341187 | MS.gene06889:intron | 40.0% | |
| CATTGCATGGGAAAACAGAA+AGG | + | chr3.2:77341157-77341176 | None:intergenic | 40.0% | |
| GAGGATGAGTTACAACACAA+GGG | + | chr3.2:77340228-77340247 | None:intergenic | 40.0% | |
| GCAAGTTATAACTCATTCGC+AGG | + | chr3.2:77340127-77340146 | None:intergenic | 40.0% | |
| GCTCATTAACCAACTAAGCT+CGG | + | chr3.2:77340340-77340359 | None:intergenic | 40.0% | |
| GGTTTCTGTTTGTGGTACTA+GGG | - | chr3.2:77339530-77339549 | MS.gene06889:intron | 40.0% | |
| GTTGCGAGCTAAATAAAGTC+TGG | + | chr3.2:77340425-77340444 | None:intergenic | 40.0% | |
| TAAGCTCGGTCATTTGTTTG+CGG | + | chr3.2:77340326-77340345 | None:intergenic | 40.0% | |
| TCTCGCGAAAGATTCATCAT+TGG | + | chr3.2:77340367-77340386 | None:intergenic | 40.0% | |
| TGGTTTCTGTTTGTGGTACT+AGG | - | chr3.2:77339529-77339548 | MS.gene06889:intron | 40.0% | |
| TGTTAACCCTTCGGTTCTTA+GGG | + | chr3.2:77340476-77340495 | None:intergenic | 40.0% | |
| TTTGTCTGCAGAGAAAGTGA+CGG | - | chr3.2:77339752-77339771 | MS.gene06889:intron | 40.0% | |
| ! | AAGAGATGCCTGTCTTCTTT+TGG | + | chr3.2:77341195-77341214 | None:intergenic | 40.0% |
| ! | AGAATCAAAAGGGTACAGAG+GGG | - | chr3.2:77340032-77340051 | MS.gene06889:intron | 40.0% |
| ! | ATCTGAATTTGACTTCTGGG+TGG | - | chr3.2:77340387-77340406 | MS.gene06889:intron | 40.0% |
| ! | GAGAATCAAAAGGGTACAGA+GGG | - | chr3.2:77340031-77340050 | MS.gene06889:intron | 40.0% |
| !! | TGCCTCTAAAATCACAGTGA+CGG | + | chr3.2:77339803-77339822 | None:intergenic | 40.0% |
| ACTGTTGCCGATGTTTACTG+TGG | - | chr3.2:77341228-77341247 | MS.gene06889:intron | 45.0% | |
| AGTAAACATCGGCAACAGTG+TGG | + | chr3.2:77341227-77341246 | None:intergenic | 45.0% | |
| ATGAGGGATGCACTACAGAT+TGG | + | chr3.2:77340571-77340590 | None:intergenic | 45.0% | |
| CATGGGAAAACAGAAAGGCT+CGG | + | chr3.2:77341152-77341171 | None:intergenic | 45.0% | |
| CGAGGATGAGTTACAACACA+AGG | + | chr3.2:77340229-77340248 | None:intergenic | 45.0% | |
| CGCGAAAGATTCATCATTGG+TGG | + | chr3.2:77340364-77340383 | None:intergenic | 45.0% | |
| GTGTTAACCCTTCGGTTCTT+AGG | + | chr3.2:77340477-77340496 | None:intergenic | 45.0% | |
| GTTAACCCTTCGGTTCTTAG+GGG | + | chr3.2:77340475-77340494 | None:intergenic | 45.0% | |
| TGAGTTACAACACAAGGGAG+AGG | + | chr3.2:77340223-77340242 | None:intergenic | 45.0% | |
| TTGGGTTACCTGAAAAGCCT+TGG | + | chr3.2:77339299-77339318 | None:intergenic | 45.0% | |
| ! | GAAGTACGAAAGAGCGTATG+AGG | - | chr3.2:77341275-77341294 | MS.gene06889:CDS | 45.0% |
| ! | GACCGTCACTGTGATTTTAG+AGG | - | chr3.2:77339798-77339817 | MS.gene06889:intron | 45.0% |
| ! | GGAGAATCAAAAGGGTACAG+AGG | - | chr3.2:77340030-77340049 | MS.gene06889:intron | 45.0% |
| ! | TTTAGCTCGCAACCAAACTC+CGG | - | chr3.2:77340432-77340451 | MS.gene06889:intron | 45.0% |
| AAACATCGGCAACAGTGTGG+AGG | + | chr3.2:77341224-77341243 | None:intergenic | 50.0% | |
| GAAGACAGGCATCTCTTGAC+TGG | - | chr3.2:77341198-77341217 | MS.gene06889:intron | 50.0% | |
| TCACTGGGCCAAAAGAAGAC+AGG | - | chr3.2:77341184-77341203 | MS.gene06889:intron | 50.0% | |
| TGGTGATTGTCGTGAAGTGC+TGG | - | chr3.2:77341248-77341267 | MS.gene06889:intron | 50.0% | |
| TTACAGCAGCAGTACAAGCG+AGG | + | chr3.2:77339238-77339257 | None:intergenic | 50.0% | |
| ! | GGTGATTGTCGTGAAGTGCT+GGG | - | chr3.2:77341249-77341268 | MS.gene06889:intron | 50.0% |
| !! | ATTGTCGTGAAGTGCTGGGT+TGG | - | chr3.2:77341253-77341272 | MS.gene06889:intron | 50.0% |
| CAATCCACGCGCAACTCTTG+CGG | - | chr3.2:77340702-77340721 | MS.gene06889:intron | 55.0% | |
| CCTCTCCCCTAAGAACCGAA+GGG | - | chr3.2:77340467-77340486 | MS.gene06889:intron | 55.0% | |
| CCTTCGGTTCTTAGGGGAGA+GGG | + | chr3.2:77340469-77340488 | None:intergenic | 55.0% | |
| CTTCGGTTCTTAGGGGAGAG+GGG | + | chr3.2:77340468-77340487 | None:intergenic | 55.0% | |
| GGCGCTAGTATTCCGGAGTT+TGG | + | chr3.2:77340447-77340466 | None:intergenic | 55.0% | |
| ! | GCGTCCCAGAAGTACAAGGA+AGG | - | chr3.2:77341297-77341316 | MS.gene06889:CDS | 55.0% |
| ! | TGAGGCGTCCCAGAAGTACA+AGG | - | chr3.2:77341293-77341312 | MS.gene06889:CDS | 55.0% |
| AGGCTCGGCCATTTCTTCCC+TGG | + | chr3.2:77341137-77341156 | None:intergenic | 60.0% | |
| ATGACCGCAAGAGTTGCGCG+TGG | + | chr3.2:77340709-77340728 | None:intergenic | 60.0% | |
| CCCTCTCCCCTAAGAACCGA+AGG | - | chr3.2:77340466-77340485 | MS.gene06889:intron | 60.0% | |
| CCCTTCGGTTCTTAGGGGAG+AGG | + | chr3.2:77340470-77340489 | None:intergenic | 60.0% | |
| !! | GGAGAGGGGCGCTAGTATTC+CGG | + | chr3.2:77340454-77340473 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 77339217 | 77341365 | 77339217 | ID=MS.gene06889 |
| chr3.2 | mRNA | 77339217 | 77341365 | 77339217 | ID=MS.gene06889.t1;Parent=MS.gene06889 |
| chr3.2 | exon | 77341273 | 77341365 | 77341273 | ID=MS.gene06889.t1.exon1;Parent=MS.gene06889.t1 |
| chr3.2 | CDS | 77341273 | 77341365 | 77341273 | ID=cds.MS.gene06889.t1;Parent=MS.gene06889.t1 |
| chr3.2 | exon | 77339217 | 77339444 | 77339217 | ID=MS.gene06889.t1.exon2;Parent=MS.gene06889.t1 |
| chr3.2 | CDS | 77339217 | 77339444 | 77339217 | ID=cds.MS.gene06889.t1;Parent=MS.gene06889.t1 |
| Gene Sequence |
| Protein sequence |
