Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06972.t1 | XP_003625904.1 | 98.6 | 293 | 4 | 0 | 1 | 293 | 1 | 293 | 1.90E-157 | 565.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06972.t1 | Q9LHH7 | 78.7 | 287 | 61 | 0 | 2 | 288 | 9 | 295 | 1.2e-128 | 460.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06972.t1 | B7FKU9 | 98.6 | 293 | 4 | 0 | 1 | 293 | 1 | 293 | 1.4e-157 | 565.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049681 | MS.gene06972 | 0.824639 | 7.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65953 | MS.gene06972 | PPI |
| MS.gene026617 | MS.gene06972 | PPI |
| MS.gene52204 | MS.gene06972 | PPI |
| MS.gene27688 | MS.gene06972 | PPI |
| MS.gene023835 | MS.gene06972 | PPI |
| MS.gene33587 | MS.gene06972 | PPI |
| MS.gene06972 | MS.gene62999 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06972.t1 | MTR_7g108580 | 98.635 | 293 | 4 | 0 | 1 | 293 | 1 | 293 | 0.0 | 585 |
| MS.gene06972.t1 | MTR_7g076680 | 66.316 | 285 | 96 | 0 | 4 | 288 | 62 | 346 | 2.57e-141 | 402 |
| MS.gene06972.t1 | MTR_7g076680 | 66.316 | 285 | 96 | 0 | 4 | 288 | 58 | 342 | 2.69e-141 | 402 |
| MS.gene06972.t1 | MTR_7g076680 | 66.316 | 285 | 96 | 0 | 4 | 288 | 79 | 363 | 3.32e-141 | 402 |
| MS.gene06972.t1 | MTR_1g030450 | 62.021 | 287 | 109 | 0 | 2 | 288 | 70 | 356 | 8.09e-127 | 365 |
| MS.gene06972.t1 | MTR_3g007490 | 51.211 | 289 | 140 | 1 | 2 | 290 | 73 | 360 | 7.20e-106 | 312 |
| MS.gene06972.t1 | MTR_3g007580 | 43.750 | 112 | 56 | 2 | 127 | 237 | 13 | 118 | 1.44e-25 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06972.t1 | AT3G12290 | 78.746 | 287 | 61 | 0 | 2 | 288 | 9 | 295 | 5.58e-170 | 473 |
| MS.gene06972.t1 | AT4G00620 | 65.157 | 287 | 100 | 0 | 2 | 288 | 69 | 355 | 3.07e-139 | 397 |
| MS.gene06972.t1 | AT2G38660 | 61.404 | 285 | 110 | 0 | 4 | 288 | 65 | 349 | 1.26e-125 | 362 |
| MS.gene06972.t1 | AT2G38660 | 61.404 | 285 | 110 | 0 | 4 | 288 | 65 | 349 | 1.26e-125 | 362 |
| MS.gene06972.t1 | AT2G38660 | 59.289 | 253 | 103 | 0 | 4 | 256 | 65 | 317 | 8.48e-107 | 314 |
| MS.gene06972.t1 | AT4G00600 | 54.355 | 287 | 95 | 1 | 2 | 288 | 55 | 305 | 1.65e-105 | 310 |
| MS.gene06972.t1 | AT2G38660 | 59.887 | 177 | 71 | 0 | 4 | 180 | 65 | 241 | 2.34e-73 | 226 |
| MS.gene06972.t1 | AT2G38660 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 2.17e-26 | 102 |
| MS.gene06972.t1 | AT2G38660 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 2.17e-26 | 102 |
| MS.gene06972.t1 | AT2G38660 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 2.17e-26 | 102 |
| MS.gene06972.t1 | AT2G38660 | 49.495 | 99 | 50 | 0 | 4 | 102 | 65 | 163 | 2.17e-26 | 102 |
Find 76 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTCATTTATATGTT+TGG | 0.237367 | 7.3:+6396815 | None:intergenic |
| TTCTCTTCATTTATATGTTT+GGG | 0.275577 | 7.3:+6396816 | None:intergenic |
| GAGAAAAGCTTGCGCTGATT+TGG | 0.292482 | 7.3:-6397051 | MS.gene06972:CDS |
| TATCATCATCTTCAGGTTGC+TGG | 0.330920 | 7.3:-6397131 | MS.gene06972:intron |
| GGTTGGATTACTCCTGTTCC+TGG | 0.334532 | 7.3:-6394807 | MS.gene06972:CDS |
| ACGAAGTGGTGTAAGTATAA+AGG | 0.338275 | 7.3:-6395639 | MS.gene06972:CDS |
| CACGGCTTTGCCGTCAATTA+CGG | 0.340063 | 7.3:+6397297 | None:intergenic |
| AGAAAAGCTTGCGCTGATTT+GGG | 0.341343 | 7.3:-6397050 | MS.gene06972:CDS |
| AGCAACATTGTGACTGTCAT+TGG | 0.347400 | 7.3:+6394774 | None:intergenic |
| CAACTAGGAAGGCAGGTTAT+AGG | 0.352622 | 7.3:-6394872 | MS.gene06972:CDS |
| GAGGAAGCATCTAAAGTTGC+TGG | 0.352957 | 7.3:-6394828 | MS.gene06972:CDS |
| CGAAGTGGTGTAAGTATAAA+GGG | 0.365346 | 7.3:-6395638 | MS.gene06972:CDS |
| TCAGCTTCGGAAATTTGTTC+AGG | 0.386703 | 7.3:+6397002 | None:intergenic |
| TTCAAAAGCAGTAATGAAAC+TGG | 0.393159 | 7.3:+6395572 | None:intergenic |
| AGCATTTACTTTGGGAGTGC+AGG | 0.399690 | 7.3:+6396695 | None:intergenic |
| GCTTCACGTATGATGTCTTC+TGG | 0.403074 | 7.3:+6395506 | None:intergenic |
| TTATATGTGTGCAGGTATAT+TGG | 0.405081 | 7.3:-6396853 | MS.gene06972:intron |
| GAGAGGGTCTCTGCCTTTCA+TGG | 0.418461 | 7.3:+6396725 | None:intergenic |
| GGACTTGCGGTGGTGATAGT+AGG | 0.423018 | 7.3:-6397110 | MS.gene06972:CDS |
| AAGGCAGGTTATAGGCTTGT+TGG | 0.427901 | 7.3:-6394864 | MS.gene06972:CDS |
| TATAACCTGCCTTCCTAGTT+GGG | 0.428149 | 7.3:+6394874 | None:intergenic |
| CTATAACCTGCCTTCCTAGT+TGG | 0.431628 | 7.3:+6394873 | None:intergenic |
| ATGCTTGATAACTTCAGCTT+CGG | 0.440233 | 7.3:+6396989 | None:intergenic |
| TTTCTTAGATCAAGGGAAGT+TGG | 0.440672 | 7.3:-6394947 | MS.gene06972:intron |
| GTGTAAGTATAAAGGGGAAA+AGG | 0.444068 | 7.3:-6395631 | MS.gene06972:CDS |
| AATGTTGCTGAAGAATACTT+TGG | 0.453034 | 7.3:-6394760 | MS.gene06972:CDS |
| GGACCTACACCTCCAGGAAC+AGG | 0.460733 | 7.3:+6394795 | None:intergenic |
| AGCCTTGAGAAGGATGTTGA+TGG | 0.475914 | 7.3:-6396777 | MS.gene06972:CDS |
| CGTATCCTCTCTGAGAAATA+CGG | 0.476330 | 7.3:-6397238 | MS.gene06972:CDS |
| AGTGACTCACCATGTACATT+GGG | 0.481285 | 7.3:+6396945 | None:intergenic |
| GATATTGTTATTGCAGCAGC+AGG | 0.488835 | 7.3:-6395482 | MS.gene06972:CDS |
| ACATCTATTACTGCAGCTCC+AGG | 0.493139 | 7.3:+6394918 | None:intergenic |
| ACTCCTGTTCCTGGAGGTGT+AGG | 0.496506 | 7.3:-6394798 | MS.gene06972:CDS |
| TGTTATTGCAGCAGCAGGAC+AGG | 0.498986 | 7.3:-6395477 | MS.gene06972:CDS |
| CGTATTTCTCAGAGAGGATA+CGG | 0.500459 | 7.3:+6397239 | None:intergenic |
| ATCGGCAAGCTTGCCATGAA+AGG | 0.510148 | 7.3:-6396738 | MS.gene06972:CDS |
| GGCTTTCATCCTTTGAACAT+CGG | 0.514273 | 7.3:-6396756 | MS.gene06972:CDS |
| TCATTTATATGTTTGGGCAG+TGG | 0.514441 | 7.3:+6396822 | None:intergenic |
| TGTAAGTATAAAGGGGAAAA+GGG | 0.521694 | 7.3:-6395630 | MS.gene06972:CDS |
| GACTGAAATCAGCCTTGAGA+AGG | 0.525446 | 7.3:-6396787 | MS.gene06972:CDS |
| GGGAAAAGGGCAGTTGTGGT+TGG | 0.536435 | 7.3:-6395617 | MS.gene06972:CDS |
| TTGGTAGAAGCAACATAGTC+GGG | 0.537576 | 7.3:-6395598 | MS.gene06972:CDS |
| GACTTGCGGTGGTGATAGTA+GGG | 0.539746 | 7.3:-6397109 | MS.gene06972:CDS |
| GCATTTACTTTGGGAGTGCA+GGG | 0.540237 | 7.3:+6396696 | None:intergenic |
| AGCAGCAGGACAGGCAAAGA+TGG | 0.543320 | 7.3:-6395468 | MS.gene06972:intron |
| GCAAGCTTGCCGATGTTCAA+AGG | 0.547348 | 7.3:+6396747 | None:intergenic |
| CTTCGGAAATTTGTTCAGGA+AGG | 0.547633 | 7.3:+6397006 | None:intergenic |
| TCTTCAGGTTGCTGGACTTG+CGG | 0.549948 | 7.3:-6397123 | MS.gene06972:intron |
| AGATCGGATTGTTTGTGCCA+CGG | 0.550515 | 7.3:+6397279 | None:intergenic |
| GATGACCCAACTAGGAAGGC+AGG | 0.556133 | 7.3:-6394879 | MS.gene06972:CDS |
| AAGCATCTAAAGTTGCTGGT+TGG | 0.557994 | 7.3:-6394824 | MS.gene06972:CDS |
| ATTCTGTTGATGACCCAACT+AGG | 0.559417 | 7.3:-6394887 | MS.gene06972:CDS |
| GTCATTGGACCTACACCTCC+AGG | 0.563478 | 7.3:+6394789 | None:intergenic |
| AAGTGACTCACCATGTACAT+TGG | 0.565737 | 7.3:+6396944 | None:intergenic |
| AAAGGGGAAAAGGGCAGTTG+TGG | 0.567603 | 7.3:-6395621 | MS.gene06972:CDS |
| CAAATGGCCACCGTAATTGA+CGG | 0.574064 | 7.3:-6397307 | MS.gene06972:CDS |
| GTTGGTAGAAGCAACATAGT+CGG | 0.574369 | 7.3:-6395599 | MS.gene06972:CDS |
| AGCCATCAACATCCTTCTCA+AGG | 0.583414 | 7.3:+6396775 | None:intergenic |
| CCTCGTCGGCGATTTCAGAT+CGG | 0.583482 | 7.3:+6397263 | None:intergenic |
| AAGGGAAGTTGGATAAAACC+TGG | 0.587815 | 7.3:-6394936 | MS.gene06972:CDS |
| TGTTGATGACCCAACTAGGA+AGG | 0.598349 | 7.3:-6394883 | MS.gene06972:CDS |
| GGAGTGCAGGGAACAAAGAG+AGG | 0.599700 | 7.3:+6396708 | None:intergenic |
| GGAGCTGCAGTAATAGATGT+TGG | 0.599760 | 7.3:-6394915 | MS.gene06972:CDS |
| GGCTTTGCCGTCAATTACGG+TGG | 0.613849 | 7.3:+6397300 | None:intergenic |
| AACGCTGATCCCAATGTACA+TGG | 0.616668 | 7.3:-6396954 | MS.gene06972:intron |
| TCAGGTTGCTGGACTTGCGG+TGG | 0.630858 | 7.3:-6397120 | MS.gene06972:intron |
| CGTAATTGACGGCAAAGCCG+TGG | 0.631640 | 7.3:-6397296 | MS.gene06972:CDS |
| CCGATCTGAAATCGCCGACG+AGG | 0.637149 | 7.3:-6397263 | MS.gene06972:CDS |
| TGGATTACTCCTGTTCCTGG+AGG | 0.641207 | 7.3:-6394804 | MS.gene06972:CDS |
| CCTTGCCGTATTTCTCAGAG+AGG | 0.642605 | 7.3:+6397233 | None:intergenic |
| CCTCTCTGAGAAATACGGCA+AGG | 0.642652 | 7.3:-6397233 | MS.gene06972:intron |
| GAAGTGGTGTAAGTATAAAG+GGG | 0.666613 | 7.3:-6395637 | MS.gene06972:CDS |
| ACTTGTGTGTGAATGAGCAA+TGG | 0.673957 | 7.3:+6395532 | None:intergenic |
| AGAGAGGATACGGACCTCGT+CGG | 0.680772 | 7.3:+6397249 | None:intergenic |
| GAGTGCAGGGAACAAAGAGA+GGG | 0.687238 | 7.3:+6396709 | None:intergenic |
| CTTGAACTATTGTCACGAAG+TGG | 0.690195 | 7.3:-6395653 | MS.gene06972:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAGTTTATAATTATGAA+TGG | - | chr7.3:6395542-6395561 | MS.gene06972:CDS | 10.0% |
| !!! | GTTTAATATTATATTTTCAT+AGG | - | chr7.3:6396749-6396768 | MS.gene06972:CDS | 10.0% |
| !! | AAAAAATCAATTAAGATTAC+TGG | - | chr7.3:6395595-6395614 | MS.gene06972:CDS | 15.0% |
| !! | AAAAATCAATTAAGATTACT+GGG | - | chr7.3:6395596-6395615 | MS.gene06972:CDS | 15.0% |
| !!! | CTTTTTTTACTGTATTTATT+TGG | - | chr7.3:6395142-6395161 | MS.gene06972:intron | 15.0% |
| !!! | TTTTTAAAAAAACATAGACT+TGG | + | chr7.3:6396627-6396646 | None:intergenic | 15.0% |
| !!! | TTTTTGTCAATTTTCAAATT+TGG | - | chr7.3:6396667-6396686 | MS.gene06972:intron | 15.0% |
| !! | AAAATCAATTAAGATTACTG+GGG | - | chr7.3:6395597-6395616 | MS.gene06972:CDS | 20.0% |
| !! | AAATGAATGATATATAAGAG+TGG | - | chr7.3:6396816-6396835 | MS.gene06972:CDS | 20.0% |
| !! | ATTATGAATGGCATAAAAAA+TGG | - | chr7.3:6395554-6395573 | MS.gene06972:CDS | 20.0% |
| !! | TAAAAAAATAAACATGTGAG+TGG | + | chr7.3:6395840-6395859 | None:intergenic | 20.0% |
| !! | TTCTCTTCATTTATATGTTT+GGG | + | chr7.3:6395216-6395235 | None:intergenic | 20.0% |
| !! | TTTCTCTTCATTTATATGTT+TGG | + | chr7.3:6395217-6395236 | None:intergenic | 20.0% |
| !!! | AAATAGTTTTTAAATGGTAG+CGG | - | chr7.3:6396722-6396741 | MS.gene06972:CDS | 20.0% |
| !!! | AATTTTCTAAAACTGTGTTT+TGG | + | chr7.3:6396983-6397002 | None:intergenic | 20.0% |
| !!! | ACGCATAAATAGTTTTTAAA+TGG | - | chr7.3:6396716-6396735 | MS.gene06972:CDS | 20.0% |
| !!! | ATTTACTTTTTCTTAGATCA+AGG | - | chr7.3:6397074-6397093 | MS.gene06972:CDS | 20.0% |
| !!! | TTTACTTTTTCTTAGATCAA+GGG | - | chr7.3:6397075-6397094 | MS.gene06972:CDS | 20.0% |
| ! | TATCAATAGGAAAATAATCC+AGG | - | chr7.3:6395392-6395411 | MS.gene06972:intron | 25.0% |
| ! | TTAGCTCAATATAATTGATG+TGG | + | chr7.3:6396798-6396817 | None:intergenic | 25.0% |
| ! | TTCAACTCAATTCTATCAAT+AGG | - | chr7.3:6395379-6395398 | MS.gene06972:intron | 25.0% |
| ! | TTGAGAAGATTAATAACAGT+AGG | + | chr7.3:6397041-6397060 | None:intergenic | 25.0% |
| !! | TGTCAATTTTCAAATTTGGA+TGG | - | chr7.3:6396671-6396690 | MS.gene06972:intron | 25.0% |
| !! | TTTTGCTAGCTAAATTAGAA+CGG | - | chr7.3:6395911-6395930 | MS.gene06972:intron | 25.0% |
| AAATTTGGATGGTTCTTTCT+TGG | - | chr7.3:6396682-6396701 | MS.gene06972:intron | 30.0% | |
| AAGATGATGAAGGAATGATT+GGG | + | chr7.3:6394829-6394848 | None:intergenic | 30.0% | |
| AATATCATTGAGAGCAACAA+CGG | + | chr7.3:6396918-6396937 | None:intergenic | 30.0% | |
| AATGTTGCTGAAGAATACTT+TGG | - | chr7.3:6397269-6397288 | MS.gene06972:CDS | 30.0% | |
| ACAAAAACTGCACATATACT+AGG | + | chr7.3:6396654-6396673 | None:intergenic | 30.0% | |
| CAATATAATTGATGTGGAAC+TGG | + | chr7.3:6396792-6396811 | None:intergenic | 30.0% | |
| CTGATTGAATTTGTAGTGTT+TGG | - | chr7.3:6395504-6395523 | MS.gene06972:CDS | 30.0% | |
| GATATTCCTATAAACGACAT+TGG | - | chr7.3:6396932-6396951 | MS.gene06972:intron | 30.0% | |
| GCTCTGTTTGGTAAAAATAA+TGG | - | chr7.3:6395414-6395433 | MS.gene06972:intron | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | chr7.3:6395516-6395535 | MS.gene06972:CDS | 30.0% | |
| TAACAGTAGGCTATAATTTC+TGG | + | chr7.3:6397028-6397047 | None:intergenic | 30.0% | |
| TAAGACATAAGCTATAAGCT+CGG | - | chr7.3:6395779-6395798 | MS.gene06972:intron | 30.0% | |
| TAGTGTTTGGTAAAATTAGC+GGG | - | chr7.3:6395517-6395536 | MS.gene06972:CDS | 30.0% | |
| TCATCATTATCATCATCTTC+AGG | - | chr7.3:6394891-6394910 | MS.gene06972:CDS | 30.0% | |
| TGTAAGTATAAAGGGGAAAA+GGG | - | chr7.3:6396399-6396418 | MS.gene06972:intron | 30.0% | |
| TGTCTTATAATCTCGTATGT+TGG | + | chr7.3:6395766-6395785 | None:intergenic | 30.0% | |
| TTATATGTGTGCAGGTATAT+TGG | - | chr7.3:6395176-6395195 | MS.gene06972:intron | 30.0% | |
| TTCAAAAGCAGTAATGAAAC+TGG | + | chr7.3:6396460-6396479 | None:intergenic | 30.0% | |
| TTTGCTAGCTAAATTAGAAC+GGG | - | chr7.3:6395912-6395931 | MS.gene06972:intron | 30.0% | |
| ! | CATATACCAATGTCGTTTAT+AGG | + | chr7.3:6396941-6396960 | None:intergenic | 30.0% |
| ! | TACATATGCTACTTGTATTC+AGG | - | chr7.3:6396348-6396367 | MS.gene06972:intron | 30.0% |
| ! | TTAATGCACAGTTTTCATTG+AGG | - | chr7.3:6395996-6396015 | MS.gene06972:intron | 30.0% |
| !! | AAGCTAACTATAGTTGATAG+CGG | - | chr7.3:6395472-6395491 | MS.gene06972:CDS | 30.0% |
| !! | AGAATGAAGAGCATTTACTT+TGG | + | chr7.3:6395346-6395365 | None:intergenic | 30.0% |
| !! | GAATGAAGAGCATTTACTTT+GGG | + | chr7.3:6395345-6395364 | None:intergenic | 30.0% |
| !!! | ACTCAAGTTTTAAACTTGAG+TGG | - | chr7.3:6396849-6396868 | MS.gene06972:intron | 30.0% |
| AAAATAATCCAGGCTCTGTT+TGG | - | chr7.3:6395402-6395421 | MS.gene06972:intron | 35.0% | |
| ACGAAGTGGTGTAAGTATAA+AGG | - | chr7.3:6396390-6396409 | MS.gene06972:intron | 35.0% | |
| CGAAGTGGTGTAAGTATAAA+GGG | - | chr7.3:6396391-6396410 | MS.gene06972:intron | 35.0% | |
| GAAAACTGTGCATTAATGAC+AGG | + | chr7.3:6395992-6396011 | None:intergenic | 35.0% | |
| GAAAGTGACAATTACCAAAC+AGG | - | chr7.3:6395729-6395748 | MS.gene06972:intron | 35.0% | |
| GAAGATGATGAAGGAATGAT+TGG | + | chr7.3:6394830-6394849 | None:intergenic | 35.0% | |
| GAAGTGGTGTAAGTATAAAG+GGG | - | chr7.3:6396392-6396411 | MS.gene06972:intron | 35.0% | |
| GTGTAAGTATAAAGGGGAAA+AGG | - | chr7.3:6396398-6396417 | MS.gene06972:intron | 35.0% | |
| TAAACTTGAGTGGAGATATG+CGG | - | chr7.3:6396859-6396878 | MS.gene06972:intron | 35.0% | |
| TAGCTAAATTAGAACGGGAT+AGG | - | chr7.3:6395917-6395936 | MS.gene06972:intron | 35.0% | |
| TCATTTATATGTTTGGGCAG+TGG | + | chr7.3:6395210-6395229 | None:intergenic | 35.0% | |
| TGTAATTGTGCGTTCTTGAT+CGG | + | chr7.3:6396287-6396306 | None:intergenic | 35.0% | |
| TTTCTTAGATCAAGGGAAGT+TGG | - | chr7.3:6397082-6397101 | MS.gene06972:CDS | 35.0% | |
| ! | ATGCTTGATAACTTCAGCTT+CGG | + | chr7.3:6395043-6395062 | None:intergenic | 35.0% |
| ! | TGTTGGAGATGTAGATTTTG+AGG | - | chr7.3:6397182-6397201 | MS.gene06972:intron | 35.0% |
| !! | GCTATAATTTCTGGAGTATG+AGG | + | chr7.3:6397019-6397038 | None:intergenic | 35.0% |
| !! | GCTCACAAACTAGCTTATTT+TGG | - | chr7.3:6395440-6395459 | MS.gene06972:intron | 35.0% |
| !! | GTTTGTTGTTATATGTGTGC+AGG | - | chr7.3:6395168-6395187 | MS.gene06972:intron | 35.0% |
| !! | TATTTTTACCAAACAGAGCC+TGG | + | chr7.3:6395413-6395432 | None:intergenic | 35.0% |
| !!! | CTAGCTTATTTTGGATGACT+TGG | - | chr7.3:6395449-6395468 | MS.gene06972:intron | 35.0% |
| AAATGACTCTTCGCATGAGT+AGG | + | chr7.3:6396112-6396131 | None:intergenic | 40.0% | |
| AAGGGAAGTTGGATAAAACC+TGG | - | chr7.3:6397093-6397112 | MS.gene06972:CDS | 40.0% | |
| AAGTGACTCACCATGTACAT+TGG | + | chr7.3:6395088-6395107 | None:intergenic | 40.0% | |
| AATCTCGCGAGAAATTGGAA+GGG | + | chr7.3:6394870-6394889 | None:intergenic | 40.0% | |
| ACTTGTGTGTGAATGAGCAA+TGG | + | chr7.3:6396500-6396519 | None:intergenic | 40.0% | |
| AGCAACATTGTGACTGTCAT+TGG | + | chr7.3:6397258-6397277 | None:intergenic | 40.0% | |
| AGTGACTCACCATGTACATT+GGG | + | chr7.3:6395087-6395106 | None:intergenic | 40.0% | |
| ATCAAGATTGTCAAGAGAGC+TGG | + | chr7.3:6396888-6396907 | None:intergenic | 40.0% | |
| ATGAGAATCTCGCGAGAAAT+TGG | + | chr7.3:6394875-6394894 | None:intergenic | 40.0% | |
| ATGTGAGTGGAATTCATCGA+GGG | + | chr7.3:6395827-6395846 | None:intergenic | 40.0% | |
| CATAGGAACCTAAGTGTTTG+TGG | - | chr7.3:6396766-6396785 | MS.gene06972:CDS | 40.0% | |
| CGTATTTCTCAGAGAGGATA+CGG | + | chr7.3:6394793-6394812 | None:intergenic | 40.0% | |
| CTTGAACTATTGTCACGAAG+TGG | - | chr7.3:6396376-6396395 | MS.gene06972:intron | 40.0% | |
| GGCTTTCATCCTTTGAACAT+CGG | - | chr7.3:6395273-6395292 | MS.gene06972:intron | 40.0% | |
| TATAACCTGCCTTCCTAGTT+GGG | + | chr7.3:6397158-6397177 | None:intergenic | 40.0% | |
| TATTGTAACAACCTTCCCAC+AGG | + | chr7.3:6396228-6396247 | None:intergenic | 40.0% | |
| TTGGTAGAAGCAACATAGTC+GGG | - | chr7.3:6396431-6396450 | MS.gene06972:intron | 40.0% | |
| ! | AAGCATCTAAAGTTGCTGGT+TGG | - | chr7.3:6397205-6397224 | MS.gene06972:intron | 40.0% |
| ! | CGTATCCTCTCTGAGAAATA+CGG | - | chr7.3:6394791-6394810 | MS.gene06972:CDS | 40.0% |
| ! | CTTCGGAAATTTGTTCAGGA+AGG | + | chr7.3:6395026-6395045 | None:intergenic | 40.0% |
| ! | GATATTGTTATTGCAGCAGC+AGG | - | chr7.3:6396547-6396566 | MS.gene06972:intron | 40.0% |
| ! | GTTGGTAGAAGCAACATAGT+CGG | - | chr7.3:6396430-6396449 | MS.gene06972:intron | 40.0% |
| ! | TCAGCTTCGGAAATTTGTTC+AGG | + | chr7.3:6395030-6395049 | None:intergenic | 40.0% |
| !! | AGAAAAGCTTGCGCTGATTT+GGG | - | chr7.3:6394979-6394998 | MS.gene06972:intron | 40.0% |
| !! | ATTCTGTTGATGACCCAACT+AGG | - | chr7.3:6397142-6397161 | MS.gene06972:intron | 40.0% |
| !! | GCTTTTGAAAGCAGATGCTA+CGG | - | chr7.3:6396471-6396490 | MS.gene06972:intron | 40.0% |
| !! | TATCATCATCTTCAGGTTGC+TGG | - | chr7.3:6394898-6394917 | MS.gene06972:CDS | 40.0% |
| AACGCTGATCCCAATGTACA+TGG | - | chr7.3:6395075-6395094 | MS.gene06972:intron | 45.0% | |
| AAGGCAGGTTATAGGCTTGT+TGG | - | chr7.3:6397165-6397184 | MS.gene06972:intron | 45.0% | |
| ACATCTATTACTGCAGCTCC+AGG | + | chr7.3:6397114-6397133 | None:intergenic | 45.0% | |
| AGATCGGATTGTTTGTGCCA+CGG | + | chr7.3:6394753-6394772 | None:intergenic | 45.0% | |
| AGCCATCAACATCCTTCTCA+AGG | + | chr7.3:6395257-6395276 | None:intergenic | 45.0% | |
| AGCCTTGAGAAGGATGTTGA+TGG | - | chr7.3:6395252-6395271 | MS.gene06972:intron | 45.0% | |
| ATCGCGAGAGAAGATGATGA+AGG | + | chr7.3:6394839-6394858 | None:intergenic | 45.0% | |
| ATCTCGCGAGAAATTGGAAG+GGG | + | chr7.3:6394869-6394888 | None:intergenic | 45.0% | |
| CAACTAGGAAGGCAGGTTAT+AGG | - | chr7.3:6397157-6397176 | MS.gene06972:intron | 45.0% | |
| CATGTGAGTGGAATTCATCG+AGG | + | chr7.3:6395828-6395847 | None:intergenic | 45.0% | |
| CTATAACCTGCCTTCCTAGT+TGG | + | chr7.3:6397159-6397178 | None:intergenic | 45.0% | |
| GAATCTCGCGAGAAATTGGA+AGG | + | chr7.3:6394871-6394890 | None:intergenic | 45.0% | |
| GAATTCATCGAGGGTCTGTT+TGG | + | chr7.3:6395818-6395837 | None:intergenic | 45.0% | |
| GACTGAAATCAGCCTTGAGA+AGG | - | chr7.3:6395242-6395261 | MS.gene06972:intron | 45.0% | |
| GCTTCACGTATGATGTCTTC+TGG | + | chr7.3:6396526-6396545 | None:intergenic | 45.0% | |
| GGAGCTGCAGTAATAGATGT+TGG | - | chr7.3:6397114-6397133 | MS.gene06972:CDS | 45.0% | |
| TGGTTGAGATCGAACCTGTT+TGG | + | chr7.3:6395746-6395765 | None:intergenic | 45.0% | |
| ! | ACAACCTTCCCACAGGTTTT+AGG | + | chr7.3:6396221-6396240 | None:intergenic | 45.0% |
| ! | AGCATTTACTTTGGGAGTGC+AGG | + | chr7.3:6395337-6395356 | None:intergenic | 45.0% |
| ! | CAACCTTCCCACAGGTTTTA+GGG | + | chr7.3:6396220-6396239 | None:intergenic | 45.0% |
| ! | GCATTTACTTTGGGAGTGCA+GGG | + | chr7.3:6395336-6395355 | None:intergenic | 45.0% |
| !! | AACCTTCCCACAGGTTTTAG+GGG | + | chr7.3:6396219-6396238 | None:intergenic | 45.0% |
| !! | GAGAAAAGCTTGCGCTGATT+TGG | - | chr7.3:6394978-6394997 | MS.gene06972:intron | 45.0% |
| !! | GAGGAAGCATCTAAAGTTGC+TGG | - | chr7.3:6397201-6397220 | MS.gene06972:intron | 45.0% |
| !! | TGTTGATGACCCAACTAGGA+AGG | - | chr7.3:6397146-6397165 | MS.gene06972:intron | 45.0% |
| !!! | GTTTATTTTTTTATAATATA+GGG | - | chr7.3:6395847-6395866 | MS.gene06972:intron | 5.0% |
| !!! | TGTTTATTTTTTTATAATAT+AGG | - | chr7.3:6395846-6395865 | MS.gene06972:intron | 5.0% |
| AAAGGGGAAAAGGGCAGTTG+TGG | - | chr7.3:6396408-6396427 | MS.gene06972:intron | 50.0% | |
| ATCGGCAAGCTTGCCATGAA+AGG | - | chr7.3:6395291-6395310 | MS.gene06972:intron | 50.0% | |
| CACGGCTTTGCCGTCAATTA+CGG | + | chr7.3:6394735-6394754 | None:intergenic | 50.0% | |
| CATCGAGGGTCTGTTTGGTA+AGG | + | chr7.3:6395813-6395832 | None:intergenic | 50.0% | |
| CCTTGCCGTATTTCTCAGAG+AGG | + | chr7.3:6394799-6394818 | None:intergenic | 50.0% | |
| GACTTGCGGTGGTGATAGTA+GGG | - | chr7.3:6394920-6394939 | MS.gene06972:CDS | 50.0% | |
| GAGTGCAGGGAACAAAGAGA+GGG | + | chr7.3:6395323-6395342 | None:intergenic | 50.0% | |
| GCAAGCTTGCCGATGTTCAA+AGG | + | chr7.3:6395285-6395304 | None:intergenic | 50.0% | |
| GGAACTGGCCACAAACACTT+AGG | + | chr7.3:6396777-6396796 | None:intergenic | 50.0% | |
| GGTTGGATTACTCCTGTTCC+TGG | - | chr7.3:6397222-6397241 | MS.gene06972:intron | 50.0% | |
| GTGATCCCCCTAAAACCTGT+GGG | - | chr7.3:6396210-6396229 | MS.gene06972:intron | 50.0% | |
| TCTCGCGAGAAATTGGAAGG+GGG | + | chr7.3:6394868-6394887 | None:intergenic | 50.0% | |
| TGGATTACTCCTGTTCCTGG+AGG | - | chr7.3:6397225-6397244 | MS.gene06972:intron | 50.0% | |
| TGTGATCCCCCTAAAACCTG+TGG | - | chr7.3:6396209-6396228 | MS.gene06972:intron | 50.0% | |
| TGTGCGTTCTTGATCGGCAT+GGG | + | chr7.3:6396281-6396300 | None:intergenic | 50.0% | |
| TGTTATTGCAGCAGCAGGAC+AGG | - | chr7.3:6396552-6396571 | MS.gene06972:intron | 50.0% | |
| TTGTGCGTTCTTGATCGGCA+TGG | + | chr7.3:6396282-6396301 | None:intergenic | 50.0% | |
| ! | CCTCTCTGAGAAATACGGCA+AGG | - | chr7.3:6394796-6394815 | MS.gene06972:CDS | 50.0% |
| !! | TCTTCAGGTTGCTGGACTTG+CGG | - | chr7.3:6394906-6394925 | MS.gene06972:CDS | 50.0% |
| !!! | ACCTTCCCACAGGTTTTAGG+GGG | + | chr7.3:6396218-6396237 | None:intergenic | 50.0% |
| AGAGAGGATACGGACCTCGT+CGG | + | chr7.3:6394783-6394802 | None:intergenic | 55.0% | |
| AGCAGCAGGACAGGCAAAGA+TGG | - | chr7.3:6396561-6396580 | MS.gene06972:intron | 55.0% | |
| CCTCGTCGGCGATTTCAGAT+CGG | + | chr7.3:6394769-6394788 | None:intergenic | 55.0% | |
| CGTAATTGACGGCAAAGCCG+TGG | - | chr7.3:6394733-6394752 | MS.gene06972:CDS | 55.0% | |
| CTCGCGAGAAATTGGAAGGG+GGG | + | chr7.3:6394867-6394886 | None:intergenic | 55.0% | |
| GAGAGGGTCTCTGCCTTTCA+TGG | + | chr7.3:6395307-6395326 | None:intergenic | 55.0% | |
| GATGACCCAACTAGGAAGGC+AGG | - | chr7.3:6397150-6397169 | MS.gene06972:intron | 55.0% | |
| GGACTTGCGGTGGTGATAGT+AGG | - | chr7.3:6394919-6394938 | MS.gene06972:CDS | 55.0% | |
| GGAGTGCAGGGAACAAAGAG+AGG | + | chr7.3:6395324-6395343 | None:intergenic | 55.0% | |
| GGCTTTGCCGTCAATTACGG+TGG | + | chr7.3:6394732-6394751 | None:intergenic | 55.0% | |
| GGGAAAAGGGCAGTTGTGGT+TGG | - | chr7.3:6396412-6396431 | MS.gene06972:intron | 55.0% | |
| GTCATTGGACCTACACCTCC+AGG | + | chr7.3:6397243-6397262 | None:intergenic | 55.0% | |
| TCCCCCTAAAACCTGTGGGA+AGG | - | chr7.3:6396214-6396233 | MS.gene06972:intron | 55.0% | |
| ! | ACTCCTGTTCCTGGAGGTGT+AGG | - | chr7.3:6397231-6397250 | MS.gene06972:intron | 55.0% |
| GGACCTACACCTCCAGGAAC+AGG | + | chr7.3:6397237-6397256 | None:intergenic | 60.0% | |
| ! | CCGATCTGAAATCGCCGACG+AGG | - | chr7.3:6394766-6394785 | MS.gene06972:CDS | 60.0% |
| ! | TCAGGTTGCTGGACTTGCGG+TGG | - | chr7.3:6394909-6394928 | MS.gene06972:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 6394725 | 6397326 | 6394725 | ID=MS.gene06972 |
| chr7.3 | mRNA | 6394725 | 6397326 | 6394725 | ID=MS.gene06972.t1;Parent=MS.gene06972 |
| chr7.3 | exon | 6397234 | 6397326 | 6397234 | ID=MS.gene06972.t1.exon1;Parent=MS.gene06972.t1 |
| chr7.3 | CDS | 6397234 | 6397326 | 6397234 | ID=cds.MS.gene06972.t1;Parent=MS.gene06972.t1 |
| chr7.3 | exon | 6396955 | 6397138 | 6396955 | ID=MS.gene06972.t1.exon2;Parent=MS.gene06972.t1 |
| chr7.3 | CDS | 6396955 | 6397138 | 6396955 | ID=cds.MS.gene06972.t1;Parent=MS.gene06972.t1 |
| chr7.3 | exon | 6396704 | 6396861 | 6396704 | ID=MS.gene06972.t1.exon3;Parent=MS.gene06972.t1 |
| chr7.3 | CDS | 6396704 | 6396861 | 6396704 | ID=cds.MS.gene06972.t1;Parent=MS.gene06972.t1 |
| chr7.3 | exon | 6395469 | 6395681 | 6395469 | ID=MS.gene06972.t1.exon4;Parent=MS.gene06972.t1 |
| chr7.3 | CDS | 6395469 | 6395681 | 6395469 | ID=cds.MS.gene06972.t1;Parent=MS.gene06972.t1 |
| chr7.3 | exon | 6394725 | 6394961 | 6394725 | ID=MS.gene06972.t1.exon5;Parent=MS.gene06972.t1 |
| chr7.3 | CDS | 6394725 | 6394961 | 6394725 | ID=cds.MS.gene06972.t1;Parent=MS.gene06972.t1 |
| Gene Sequence |
| Protein sequence |
