Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070037.t1 | XP_003628399.1 | 97.6 | 126 | 3 | 0 | 1 | 126 | 440 | 565 | 2.20E-63 | 251.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070037.t1 | Q9SAJ3 | 90.5 | 126 | 12 | 0 | 1 | 126 | 460 | 585 | 2.3e-61 | 236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070037.t1 | G7LB10 | 97.6 | 126 | 3 | 0 | 1 | 126 | 440 | 565 | 1.6e-63 | 251.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene070037 | 0.851226 | 1.02E-60 | -1.69E-46 |
| MS.gene050226 | MS.gene070037 | 0.815816 | 7.62E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene070037 | 0.816615 | 5.05E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene070037 | 0.818921 | 1.52E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene070037 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene070037 | 0.827486 | 1.52E-54 | -1.69E-46 |
| MS.gene050820 | MS.gene070037 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene070037 | 0.811372 | 7.23E-51 | -1.69E-46 |
| MS.gene051663 | MS.gene070037 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene070037 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene070037 | 0.809546 | 1.79E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene070037 | 0.831356 | 1.75E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene070037 | 0.856757 | 2.59E-62 | -1.69E-46 |
| MS.gene056875 | MS.gene070037 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene070037 | 0.837249 | 5.81E-57 | -1.69E-46 |
| MS.gene057260 | MS.gene070037 | 0.800508 | 1.39E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070037.t1 | MTR_8g056860 | 98.148 | 54 | 1 | 0 | 126 | 179 | 575 | 628 | 1.07e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070037.t1 | AT1G79560 | 88.889 | 54 | 6 | 0 | 126 | 179 | 595 | 648 | 1.30e-26 | 105 |
| MS.gene070037.t1 | AT1G79560 | 88.889 | 54 | 6 | 0 | 126 | 179 | 595 | 648 | 1.31e-26 | 105 |
| MS.gene070037.t1 | AT1G79560 | 88.889 | 54 | 6 | 0 | 126 | 179 | 595 | 648 | 1.31e-26 | 105 |
Find 36 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGCCGAAAATTTCATTC+TGG | 0.335256 | 8.4:-53629862 | MS.gene070037:intron |
| TTGTGTTGGGAGGTGATGTT+TGG | 0.337030 | 8.4:-53629393 | MS.gene070037:CDS |
| GTATAATCAACTCTTCGATA+TGG | 0.405540 | 8.4:-53629886 | MS.gene070037:CDS |
| AAAGGGATGTGAAGTTTGTT+CGG | 0.407161 | 8.4:-53629318 | MS.gene070037:CDS |
| AAGGGATGTGAAGTTTGTTC+GGG | 0.411649 | 8.4:-53629317 | MS.gene070037:intron |
| CTCTCTGGACCTCCAGGAAC+AGG | 0.416784 | 8.4:-53629210 | MS.gene070037:CDS |
| GCTCTTCTTACACAGCTTGA+TGG | 0.419844 | 8.4:-53628524 | MS.gene070037:CDS |
| ACCTCCCAACACAACTTCCT+TGG | 0.436830 | 8.4:+53629402 | None:intergenic |
| TAACTCATCTGCTCTATTTG+TGG | 0.443794 | 8.4:+53627636 | None:intergenic |
| TGTGTTGGGAGGTGATGTTT+GGG | 0.450638 | 8.4:-53629392 | MS.gene070037:CDS |
| GTTTCACCAACATCTCCAAC+TGG | 0.454978 | 8.4:+53629436 | None:intergenic |
| GATGAAATAGATGCCATTGC+TGG | 0.455159 | 8.4:-53628590 | MS.gene070037:intron |
| TCCTATGCAGTTCTATGAAA+GGG | 0.479855 | 8.4:-53629335 | MS.gene070037:CDS |
| TTCTTACATTTCTCCTAGCA+AGG | 0.480933 | 8.4:+53629067 | None:intergenic |
| TGTCAGCCAGTTGGAGATGT+TGG | 0.487312 | 8.4:-53629442 | MS.gene070037:intron |
| GTTCTACTCTCTGGACCTCC+AGG | 0.488277 | 8.4:-53629216 | MS.gene070037:CDS |
| ATGCAGGGTGTTCTACTCTC+TGG | 0.492986 | 8.4:-53629225 | MS.gene070037:intron |
| ACAAGATGTTCTCCCTTGCT+AGG | 0.502381 | 8.4:-53629080 | MS.gene070037:CDS |
| ATCCTATGCAGTTCTATGAA+AGG | 0.509346 | 8.4:-53629336 | MS.gene070037:CDS |
| TATGTCCAAGGAAGTTGTGT+TGG | 0.539123 | 8.4:-53629407 | MS.gene070037:CDS |
| ATGTCCAAGGAAGTTGTGTT+GGG | 0.540932 | 8.4:-53629406 | MS.gene070037:CDS |
| TCTTACATTTCTCCTAGCAA+GGG | 0.552331 | 8.4:+53629068 | None:intergenic |
| TTTCATGTTTGTCAGCCAGT+TGG | 0.555272 | 8.4:-53629451 | MS.gene070037:intron |
| TAAATATGACCGCTTGTCTG+AGG | 0.562830 | 8.4:+53627665 | None:intergenic |
| CCGAGTATGTCTTCCAGCAA+TGG | 0.564173 | 8.4:+53628577 | None:intergenic |
| AAATATGACCGCTTGTCTGA+GGG | 0.577863 | 8.4:+53627666 | None:intergenic |
| GTGAAAAGAGTGGAGCAGCT+AGG | 0.577991 | 8.4:-53629107 | MS.gene070037:CDS |
| TCCCTTTCATAGAACTGCAT+AGG | 0.592627 | 8.4:+53629334 | None:intergenic |
| CCGCTTGTCTGAGGGATACA+CGG | 0.599240 | 8.4:+53627674 | None:intergenic |
| TGAAACAAAATCTATGTCCA+AGG | 0.602059 | 8.4:-53629419 | MS.gene070037:CDS |
| AGGACACTTGCAAAACAAAG+TGG | 0.604423 | 8.4:-53629171 | MS.gene070037:CDS |
| TTCACAGATAGTGAAAAGAG+TGG | 0.621058 | 8.4:-53629117 | MS.gene070037:CDS |
| TGCTGGAAGACATACTCGGA+AGG | 0.639110 | 8.4:-53628573 | MS.gene070037:CDS |
| CCGTGTATCCCTCAGACAAG+CGG | 0.643573 | 8.4:-53627674 | MS.gene070037:CDS |
| CCATTGCTGGAAGACATACT+CGG | 0.657373 | 8.4:-53628577 | MS.gene070037:CDS |
| TCCAAGGAAGTTGTGTTGGG+AGG | 0.689756 | 8.4:-53629403 | MS.gene070037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTACAACTTATATTTA+GGG | + | chr8.4:53628751-53628770 | None:intergenic | 10.0% |
| !! | TTAAATTACAACTTATATTT+AGG | + | chr8.4:53628752-53628771 | None:intergenic | 10.0% |
| !! | ACATGAAAATAAATTAGTAA+TGG | + | chr8.4:53628076-53628095 | None:intergenic | 15.0% |
| !! | TCATATCATATTATGTAAAT+AGG | - | chr8.4:53629094-53629113 | MS.gene070037:CDS | 15.0% |
| !! | TGAAATTTGTAATTATTGTA+TGG | - | chr8.4:53629060-53629079 | MS.gene070037:intron | 15.0% |
| !!! | ACTTAAAACAATATTTTCAT+TGG | + | chr8.4:53627811-53627830 | None:intergenic | 15.0% |
| !!! | TATTTTCAAAATTGTAATCA+AGG | + | chr8.4:53628664-53628683 | None:intergenic | 15.0% |
| !! | AAATGATAAGACGAAAATAA+AGG | + | chr8.4:53629746-53629765 | None:intergenic | 20.0% |
| !! | ATGCAAAATTGTTCTTAAAA+TGG | + | chr8.4:53629780-53629799 | None:intergenic | 20.0% |
| !! | CAAAAACAAAAGAAATGAAA+AGG | + | chr8.4:53628556-53628575 | None:intergenic | 20.0% |
| !! | GAAAATAAAGGAAATTAAGA+TGG | + | chr8.4:53629734-53629753 | None:intergenic | 20.0% |
| !! | TAAAATATTTGATCTTTGCA+TGG | - | chr8.4:53628245-53628264 | MS.gene070037:intron | 20.0% |
| !! | TGTTCAATGAGATAAAATAA+AGG | + | chr8.4:53629218-53629237 | None:intergenic | 20.0% |
| !!! | AAATGCTGTAATTTTGATTT+GGG | + | chr8.4:53627740-53627759 | None:intergenic | 20.0% |
| !!! | TAAATGCTGTAATTTTGATT+TGG | + | chr8.4:53627741-53627760 | None:intergenic | 20.0% |
| !!! | TAACCATTTTTCTTTTAGTT+AGG | - | chr8.4:53629534-53629553 | MS.gene070037:intron | 20.0% |
| !!! | TTATTTTATCTCATTGAACA+TGG | - | chr8.4:53629218-53629237 | MS.gene070037:CDS | 20.0% |
| !!! | TTTTTTTTTTGTCCGATAAA+TGG | - | chr8.4:53628609-53628628 | MS.gene070037:intron | 20.0% |
| ! | AAAATGATGACACTTGAATT+TGG | + | chr8.4:53629472-53629491 | None:intergenic | 25.0% |
| ! | AACATCTAAGTTCCATTTAT+CGG | + | chr8.4:53628624-53628643 | None:intergenic | 25.0% |
| ! | ACAGGAAAAAAACAATAGAA+GGG | + | chr8.4:53629377-53629396 | None:intergenic | 25.0% |
| ! | ATAGGCAAAAAAACCAAATA+GGG | + | chr8.4:53629669-53629688 | None:intergenic | 25.0% |
| ! | CCAAATTTAAATTCAGTATC+TGG | - | chr8.4:53628037-53628056 | MS.gene070037:intron | 25.0% |
| ! | CCAGATACTGAATTTAAATT+TGG | + | chr8.4:53628040-53628059 | None:intergenic | 25.0% |
| ! | GAACCTAACTAAAAGAAAAA+TGG | + | chr8.4:53629540-53629559 | None:intergenic | 25.0% |
| ! | GATTTCAAAAAAGACAATGA+TGG | - | chr8.4:53628530-53628549 | MS.gene070037:CDS | 25.0% |
| ! | TTAAGTCTGGAAAATTGAAT+TGG | - | chr8.4:53629597-53629616 | MS.gene070037:intron | 25.0% |
| ! | TTAGGCATTATATATGTTGA+GGG | + | chr8.4:53628813-53628832 | None:intergenic | 25.0% |
| ! | TTGAAACCTTATAAACTGTA+GGG | - | chr8.4:53627707-53627726 | MS.gene070037:intron | 25.0% |
| ! | TTTATTCCCTACAGTTTATA+AGG | + | chr8.4:53627716-53627735 | None:intergenic | 25.0% |
| !! | TTCTTTCTTTTTCTTTCTGT+AGG | - | chr8.4:53628906-53628925 | MS.gene070037:intron | 25.0% |
| !! | TTTGAAACCTTATAAACTGT+AGG | - | chr8.4:53627706-53627725 | MS.gene070037:intron | 25.0% |
| !!! | CTTTTGTTTTTGCTTAATCT+TGG | - | chr8.4:53628564-53628583 | MS.gene070037:CDS | 25.0% |
| AAAAATTGTCATCGGAGAAT+GGG | + | chr8.4:53629294-53629313 | None:intergenic | 30.0% | |
| ATGGTTAGAAATCTCATTCA+AGG | + | chr8.4:53629521-53629540 | None:intergenic | 30.0% | |
| CACAGGAAAAAAACAATAGA+AGG | + | chr8.4:53629378-53629397 | None:intergenic | 30.0% | |
| CAGGAAAAAAACAATAGAAG+GGG | + | chr8.4:53629376-53629395 | None:intergenic | 30.0% | |
| CATAGGCAAAAAAACCAAAT+AGG | + | chr8.4:53629670-53629689 | None:intergenic | 30.0% | |
| CATTACTATTATCTGTCACA+AGG | + | chr8.4:53628711-53628730 | None:intergenic | 30.0% | |
| GTATAATCAACTCTTCGATA+TGG | - | chr8.4:53627653-53627672 | MS.gene070037:CDS | 30.0% | |
| GTTAGGCATTATATATGTTG+AGG | + | chr8.4:53628814-53628833 | None:intergenic | 30.0% | |
| TAAGATGGCATCACATATAA+TGG | + | chr8.4:53629719-53629738 | None:intergenic | 30.0% | |
| TAGGCATTATATATGTTGAG+GGG | + | chr8.4:53628812-53628831 | None:intergenic | 30.0% | |
| TCATCCACAAATACAAAACA+AGG | + | chr8.4:53628934-53628953 | None:intergenic | 30.0% | |
| TGAAACAAAATCTATGTCCA+AGG | - | chr8.4:53628120-53628139 | MS.gene070037:intron | 30.0% | |
| TTATGCCGAAAATTTCATTC+TGG | - | chr8.4:53627677-53627696 | MS.gene070037:CDS | 30.0% | |
| TTCCTCTCAAAAAACTCTTA+TGG | + | chr8.4:53627860-53627879 | None:intergenic | 30.0% | |
| ! | AATGTAGTGTTCTTTTCTGT+TGG | - | chr8.4:53627937-53627956 | MS.gene070037:intron | 30.0% |
| ! | CCTTACCAGAATGAAATTTT+CGG | + | chr8.4:53627685-53627704 | None:intergenic | 30.0% |
| ! | TCAATTTTCCAGACTTAACA+AGG | + | chr8.4:53629595-53629614 | None:intergenic | 30.0% |
| ! | TGACTTTTGTACTTGTCTTT+AGG | - | chr8.4:53629822-53629841 | MS.gene070037:intron | 30.0% |
| ! | TGAGAAGTATGTAATACCAT+AGG | + | chr8.4:53629687-53629706 | None:intergenic | 30.0% |
| ! | TTTTTACGATTTCCTATGTC+AGG | + | chr8.4:53629253-53629272 | None:intergenic | 30.0% |
| !! | TTTGTTTTCCTTGTTAAGTC+TGG | - | chr8.4:53629584-53629603 | MS.gene070037:intron | 30.0% |
| !! | TTTTGTACTTGTCTTTAGGA+AGG | - | chr8.4:53629826-53629845 | MS.gene070037:intron | 30.0% |
| !!! | CTATTTGGTTTTTTTGCCTA+TGG | - | chr8.4:53629668-53629687 | MS.gene070037:intron | 30.0% |
| !!! | TTGTCGACAATTTTTTGAAG+TGG | - | chr8.4:53628275-53628294 | MS.gene070037:intron | 30.0% |
| AATCGCAGTTGTATTAGAAG+TGG | + | chr8.4:53628514-53628533 | None:intergenic | 35.0% | |
| AGATGTTGTTACACCCTATT+TGG | - | chr8.4:53629653-53629672 | MS.gene070037:intron | 35.0% | |
| ATCCTATGCAGTTCTATGAA+AGG | - | chr8.4:53628203-53628222 | MS.gene070037:intron | 35.0% | |
| CAAATCGGTAAGTTGTAACA+AGG | + | chr8.4:53629346-53629365 | None:intergenic | 35.0% | |
| CCGAAAATTTCATTCTGGTA+AGG | - | chr8.4:53627682-53627701 | MS.gene070037:CDS | 35.0% | |
| CTACCTTACATTGAAGTTTC+AGG | - | chr8.4:53629411-53629430 | MS.gene070037:CDS | 35.0% | |
| GAAAAATTGTCATCGGAGAA+TGG | + | chr8.4:53629295-53629314 | None:intergenic | 35.0% | |
| GAACCTGAAACTTCAATGTA+AGG | + | chr8.4:53629417-53629436 | None:intergenic | 35.0% | |
| GGTTGCTGAAAAATTGTCAT+CGG | + | chr8.4:53629302-53629321 | None:intergenic | 35.0% | |
| TAACAAGGTGGAAACCAAAA+AGG | + | chr8.4:53629331-53629350 | None:intergenic | 35.0% | |
| TAACTCATCTGCTCTATTTG+TGG | + | chr8.4:53629906-53629925 | None:intergenic | 35.0% | |
| TCATTTCATTCAATGAGTGC+TGG | - | chr8.4:53628848-53628867 | MS.gene070037:intron | 35.0% | |
| TCCTATGCAGTTCTATGAAA+GGG | - | chr8.4:53628204-53628223 | MS.gene070037:intron | 35.0% | |
| TCTTACATTTCTCCTAGCAA+GGG | + | chr8.4:53628474-53628493 | None:intergenic | 35.0% | |
| TGGAAACCAAAAAGGAATCA+CGG | + | chr8.4:53629323-53629342 | None:intergenic | 35.0% | |
| TGGCTAAGATGAACAAACAA+GGG | + | chr8.4:53627791-53627810 | None:intergenic | 35.0% | |
| TTAATGACCAAACACATGCA+GGG | - | chr8.4:53628299-53628318 | MS.gene070037:intron | 35.0% | |
| TTCACAGATAGTGAAAAGAG+TGG | - | chr8.4:53628422-53628441 | MS.gene070037:intron | 35.0% | |
| TTCTTACATTTCTCCTAGCA+AGG | + | chr8.4:53628475-53628494 | None:intergenic | 35.0% | |
| TTGGCTAAGATGAACAAACA+AGG | + | chr8.4:53627792-53627811 | None:intergenic | 35.0% | |
| TTTAATGACCAAACACATGC+AGG | - | chr8.4:53628298-53628317 | MS.gene070037:intron | 35.0% | |
| ! | AAAGGGATGTGAAGTTTGTT+CGG | - | chr8.4:53628221-53628240 | MS.gene070037:intron | 35.0% |
| ! | ACGTAGAAAAGCAACTTTTG+AGG | - | chr8.4:53628993-53629012 | MS.gene070037:intron | 35.0% |
| ! | GTCTTTAGGAAGGAAAAAAC+TGG | - | chr8.4:53629836-53629855 | MS.gene070037:intron | 35.0% |
| !! | ATCAGCCTTTAAAACTTAGG+GGG | + | chr8.4:53628008-53628027 | None:intergenic | 35.0% |
| !! | CAGGAAAAACACTTTTTGCA+AGG | - | chr8.4:53628348-53628367 | MS.gene070037:intron | 35.0% |
| !! | CATCAGCCTTTAAAACTTAG+GGG | + | chr8.4:53628009-53628028 | None:intergenic | 35.0% |
| !! | GCATCAGCCTTTAAAACTTA+GGG | + | chr8.4:53628010-53628029 | None:intergenic | 35.0% |
| !! | TGCATCAGCCTTTAAAACTT+AGG | + | chr8.4:53628011-53628030 | None:intergenic | 35.0% |
| !!! | AAAAGTGTTTTTCCTGTTCC+TGG | + | chr8.4:53628344-53628363 | None:intergenic | 35.0% |
| !!! | GTCCATAAGAGTTTTTTGAG+AGG | - | chr8.4:53627855-53627874 | MS.gene070037:intron | 35.0% |
| !!! | TCAAAAGTTGCTTTTCTACG+TGG | + | chr8.4:53628994-53629013 | None:intergenic | 35.0% |
| AAATATGACCGCTTGTCTGA+GGG | + | chr8.4:53629876-53629895 | None:intergenic | 40.0% | |
| ACTTCAATGTAAGGTAGACC+AGG | + | chr8.4:53629408-53629427 | None:intergenic | 40.0% | |
| AGAAGGGGTAGAGAACAAAT+CGG | + | chr8.4:53629361-53629380 | None:intergenic | 40.0% | |
| AGGACACTTGCAAAACAAAG+TGG | - | chr8.4:53628368-53628387 | MS.gene070037:intron | 40.0% | |
| AGGGTGTAACAACATCTACA+AGG | + | chr8.4:53629650-53629669 | None:intergenic | 40.0% | |
| ATCGGTAAGTTGTAACAAGG+TGG | + | chr8.4:53629343-53629362 | None:intergenic | 40.0% | |
| ATGTCCAAGGAAGTTGTGTT+GGG | - | chr8.4:53628133-53628152 | MS.gene070037:intron | 40.0% | |
| GATGAAATAGATGCCATTGC+TGG | - | chr8.4:53628949-53628968 | MS.gene070037:intron | 40.0% | |
| TAAATATGACCGCTTGTCTG+AGG | + | chr8.4:53629877-53629896 | None:intergenic | 40.0% | |
| TATGTCCAAGGAAGTTGTGT+TGG | - | chr8.4:53628132-53628151 | MS.gene070037:intron | 40.0% | |
| TCCCTTTCATAGAACTGCAT+AGG | + | chr8.4:53628208-53628227 | None:intergenic | 40.0% | |
| TGGTATCTTCAACCTGACAT+AGG | - | chr8.4:53629238-53629257 | MS.gene070037:intron | 40.0% | |
| TTTCATGTTTGTCAGCCAGT+TGG | - | chr8.4:53628088-53628107 | MS.gene070037:intron | 40.0% | |
| ! | AAGGGATGTGAAGTTTGTTC+GGG | - | chr8.4:53628222-53628241 | MS.gene070037:intron | 40.0% |
| ! | AGTGTTCTTTTCTGTTGGCA+AGG | - | chr8.4:53627942-53627961 | MS.gene070037:intron | 40.0% |
| ! | TGACAAGAGCTTAGAGTGTT+AGG | + | chr8.4:53628831-53628850 | None:intergenic | 40.0% |
| ! | TTTTTCCTGTGAGAATCTCC+TGG | - | chr8.4:53629387-53629406 | MS.gene070037:CDS | 40.0% |
| !! | CATTGAAGTTTCAGGTTCAG+AGG | - | chr8.4:53629419-53629438 | MS.gene070037:CDS | 40.0% |
| !! | TCAGCCTTTAAAACTTAGGG+GGG | + | chr8.4:53628007-53628026 | None:intergenic | 40.0% |
| !!! | CTGCCTTTTGTTTTTGCTTC+TGG | - | chr8.4:53628392-53628411 | MS.gene070037:intron | 40.0% |
| !!! | GGCACCTTGTTTTGTATTTG+TGG | - | chr8.4:53628927-53628946 | MS.gene070037:intron | 40.0% |
| ACAAGATGTTCTCCCTTGCT+AGG | - | chr8.4:53628459-53628478 | MS.gene070037:intron | 45.0% | |
| CCATTGCTGGAAGACATACT+CGG | - | chr8.4:53628962-53628981 | MS.gene070037:intron | 45.0% | |
| GCAGTTGTATTAGAAGTGGC+AGG | + | chr8.4:53628510-53628529 | None:intergenic | 45.0% | |
| GCGCCAGAAGCAAAAACAAA+AGG | + | chr8.4:53628398-53628417 | None:intergenic | 45.0% | |
| GCTCTTCTTACACAGCTTGA+TGG | - | chr8.4:53629015-53629034 | MS.gene070037:intron | 45.0% | |
| GTTTCACCAACATCTCCAAC+TGG | + | chr8.4:53628106-53628125 | None:intergenic | 45.0% | |
| TAAAAACTGTGCCTACCTGG+AGG | - | chr8.4:53629267-53629286 | MS.gene070037:intron | 45.0% | |
| TAGAACACCCTGCATGTGTT+TGG | + | chr8.4:53628309-53628328 | None:intergenic | 45.0% | |
| TCGTAAAAACTGTGCCTACC+TGG | - | chr8.4:53629264-53629283 | MS.gene070037:intron | 45.0% | |
| TGTGTTGGGAGGTGATGTTT+GGG | - | chr8.4:53628147-53628166 | MS.gene070037:intron | 45.0% | |
| TTGTGTTGGGAGGTGATGTT+TGG | - | chr8.4:53628146-53628165 | MS.gene070037:intron | 45.0% | |
| ! | AGTGTTTTTCCTGTTCCTGG+AGG | + | chr8.4:53628341-53628360 | None:intergenic | 45.0% |
| ! | CAGCAACCGTGATTCCTTTT+TGG | - | chr8.4:53629314-53629333 | MS.gene070037:intron | 45.0% |
| !! | GTTGCCCCCCTAAGTTTTAA+AGG | - | chr8.4:53628000-53628019 | MS.gene070037:intron | 45.0% |
| AAAAACCTCCGCGCATGTGA+TGG | - | chr8.4:53629493-53629512 | MS.gene070037:intron | 50.0% | |
| ACCTCCCAACACAACTTCCT+TGG | + | chr8.4:53628140-53628159 | None:intergenic | 50.0% | |
| CCGAGTATGTCTTCCAGCAA+TGG | + | chr8.4:53628965-53628984 | None:intergenic | 50.0% | |
| GTAGACCAGGAGATTCTCAC+AGG | + | chr8.4:53629395-53629414 | None:intergenic | 50.0% | |
| GTGAAAAGAGTGGAGCAGCT+AGG | - | chr8.4:53628432-53628451 | MS.gene070037:intron | 50.0% | |
| GTGTTTGCAAGCAGTTCAGC+AGG | + | chr8.4:53629445-53629464 | None:intergenic | 50.0% | |
| TCCAAGGAAGTTGTGTTGGG+AGG | - | chr8.4:53628136-53628155 | MS.gene070037:intron | 50.0% | |
| TGCTGGAAGACATACTCGGA+AGG | - | chr8.4:53628966-53628985 | MS.gene070037:intron | 50.0% | |
| TGTCAGCCAGTTGGAGATGT+TGG | - | chr8.4:53628097-53628116 | MS.gene070037:intron | 50.0% | |
| ! | ATGCAGGGTGTTCTACTCTC+TGG | - | chr8.4:53628314-53628333 | MS.gene070037:intron | 50.0% |
| CCGCTTGTCTGAGGGATACA+CGG | + | chr8.4:53629868-53629887 | None:intergenic | 55.0% | |
| CCGTGTATCCCTCAGACAAG+CGG | - | chr8.4:53629865-53629884 | MS.gene070037:CDS | 55.0% | |
| GTTCTACTCTCTGGACCTCC+AGG | - | chr8.4:53628323-53628342 | MS.gene070037:intron | 55.0% | |
| CATCGGAGAATGGGTCCTCC+AGG | + | chr8.4:53629285-53629304 | None:intergenic | 60.0% | |
| CTCTCTGGACCTCCAGGAAC+AGG | - | chr8.4:53628329-53628348 | MS.gene070037:intron | 60.0% | |
| GGAGAATGGGTCCTCCAGGT+AGG | + | chr8.4:53629281-53629300 | None:intergenic | 60.0% | |
| ! | TCAAGGCGCCATCACATGCG+CGG | + | chr8.4:53629504-53629523 | None:intergenic | 60.0% |
| AGGCGCCATCACATGCGCGG+AGG | + | chr8.4:53629501-53629520 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 53627635 | 53629926 | 53627635 | ID=MS.gene070037 |
| chr8.4 | mRNA | 53627635 | 53629926 | 53627635 | ID=MS.gene070037.t1;Parent=MS.gene070037 |
| chr8.4 | exon | 53629863 | 53629926 | 53629863 | ID=MS.gene070037.t1.exon1;Parent=MS.gene070037.t1 |
| chr8.4 | CDS | 53629863 | 53629926 | 53629863 | ID=cds.MS.gene070037.t1;Parent=MS.gene070037.t1 |
| chr8.4 | exon | 53629318 | 53629458 | 53629318 | ID=MS.gene070037.t1.exon2;Parent=MS.gene070037.t1 |
| chr8.4 | CDS | 53629318 | 53629458 | 53629318 | ID=cds.MS.gene070037.t1;Parent=MS.gene070037.t1 |
| chr8.4 | exon | 53629074 | 53629241 | 53629074 | ID=MS.gene070037.t1.exon3;Parent=MS.gene070037.t1 |
| chr8.4 | CDS | 53629074 | 53629241 | 53629074 | ID=cds.MS.gene070037.t1;Parent=MS.gene070037.t1 |
| chr8.4 | exon | 53628521 | 53628602 | 53628521 | ID=MS.gene070037.t1.exon4;Parent=MS.gene070037.t1 |
| chr8.4 | CDS | 53628521 | 53628602 | 53628521 | ID=cds.MS.gene070037.t1;Parent=MS.gene070037.t1 |
| chr8.4 | exon | 53627635 | 53627717 | 53627635 | ID=MS.gene070037.t1.exon5;Parent=MS.gene070037.t1 |
| chr8.4 | CDS | 53627635 | 53627717 | 53627635 | ID=cds.MS.gene070037.t1;Parent=MS.gene070037.t1 |
| Gene Sequence |
| Protein sequence |
