AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070096

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070096.t1 MTR_5g026930 99.164 598 5 0 1 598 1 598 0.0 1243
MS.gene070096.t1 MTR_5g026930 99.198 499 4 0 1 499 1 499 0.0 1035
MS.gene070096.t1 MTR_8g071280 76.333 600 136 3 1 598 1 596 0.0 959
MS.gene070096.t1 MTR_1g101370 46.040 606 299 11 11 590 14 617 0.0 548
MS.gene070096.t1 MTR_0019s0120 49.146 527 255 8 72 590 105 626 0.0 526
MS.gene070096.t1 MTR_8g432680 48.106 528 263 9 72 590 105 630 6.10e-179 521
MS.gene070096.t1 MTR_8g100075 46.958 526 269 7 72 590 98 620 1.81e-178 519
MS.gene070096.t1 MTR_7g076170 48.059 541 260 11 73 598 102 636 1.44e-174 509
MS.gene070096.t1 MTR_8g055840 43.261 601 309 12 13 590 9 600 2.10e-168 493
MS.gene070096.t1 MTR_5g040360 42.167 600 316 10 13 590 9 599 3.77e-168 492
MS.gene070096.t1 MTR_4g098890 44.167 600 305 11 13 589 10 602 2.82e-165 512
MS.gene070096.t1 MTR_7g006060 46.332 518 268 7 57 566 28 543 5.87e-164 480
MS.gene070096.t1 MTR_3g040370 43.072 599 309 14 13 590 10 597 6.95e-164 481
MS.gene070096.t1 MTR_7g076150 44.090 533 268 10 71 591 74 588 4.40e-154 455
MS.gene070096.t1 MTR_5g080720 43.036 560 294 11 38 587 93 637 5.44e-154 457
MS.gene070096.t1 MTR_1g442840 38.818 626 325 11 13 595 10 620 1.35e-151 450
MS.gene070096.t1 MTR_8g432620 40.721 555 300 9 49 590 62 600 1.95e-151 449
MS.gene070096.t1 MTR_0019s0120 49.425 435 208 7 72 499 105 534 2.95e-148 439
MS.gene070096.t1 MTR_3g068990 43.808 541 277 11 60 589 143 667 3.05e-148 443
MS.gene070096.t1 MTR_1g442840 43.056 504 266 6 103 595 14 507 2.69e-147 435
MS.gene070096.t1 MTR_1g069785 39.967 598 328 11 13 595 9 590 4.00e-147 438
MS.gene070096.t1 MTR_1g075900 40.727 550 291 9 66 595 85 619 1.41e-144 432
MS.gene070096.t1 MTR_5g021100 41.573 534 273 13 81 597 329 840 2.38e-142 433
MS.gene070096.t1 MTR_8g076650 43.074 527 266 11 81 593 387 893 6.02e-141 431
MS.gene070096.t1 MTR_3g096480 42.135 534 270 14 81 595 268 781 9.71e-139 422
MS.gene070096.t1 MTR_1g029730 42.366 524 271 14 81 589 151 658 1.14e-138 418
MS.gene070096.t1 MTR_5g083150 40.977 532 272 12 81 597 101 605 1.61e-137 413
MS.gene070096.t1 MTR_5g080720 42.656 497 261 10 38 525 93 574 2.89e-134 404
MS.gene070096.t1 MTR_7g076150 44.708 463 226 10 141 591 1 445 1.18e-133 398
MS.gene070096.t1 MTR_8g093880 39.785 558 296 14 53 593 275 809 2.75e-132 407
MS.gene070096.t1 MTR_3g088790 41.651 533 271 15 81 593 233 745 5.66e-132 404
MS.gene070096.t1 MTR_3g071530 41.300 523 269 12 81 592 153 648 2.47e-131 399
MS.gene070096.t1 MTR_1g051055 38.333 600 317 14 25 590 23 603 1.98e-126 385
MS.gene070096.t1 MTR_1g022255 36.832 524 290 13 80 592 208 701 5.11e-111 348
MS.gene070096.t1 MTR_5g064080 32.332 566 329 14 55 591 131 671 2.46e-96 309
MS.gene070096.t1 MTR_3g074780 31.130 575 347 14 51 591 130 689 1.77e-93 302
MS.gene070096.t1 MTR_4g083030 32.500 560 322 14 55 587 71 601 2.51e-92 296
MS.gene070096.t1 MTR_1g022255 32.481 391 227 11 80 460 208 571 6.25e-61 213
MS.gene070096.t1 MTR_5g033760 63.636 66 24 0 533 598 41 106 3.04e-23 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070096.t1 AT4G19120 74.167 600 151 3 1 598 1 598 0.0 959
MS.gene070096.t1 AT4G19120 74.167 600 151 3 1 598 1 598 0.0 959
MS.gene070096.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 957
MS.gene070096.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 957
MS.gene070096.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 957
MS.gene070096.t1 AT1G31850 73.588 602 151 4 4 597 2 603 0.0 957
MS.gene070096.t1 AT4G19120 74.451 501 124 3 1 499 1 499 0.0 801
MS.gene070096.t1 AT4G10440 46.805 532 272 7 72 594 93 622 4.42e-179 521
MS.gene070096.t1 AT1G33170 46.429 532 275 7 72 595 110 639 7.73e-177 515
MS.gene070096.t1 AT4G00750 42.599 608 315 11 14 590 18 622 2.25e-174 509
MS.gene070096.t1 AT2G45750 46.704 531 271 7 71 590 86 615 6.23e-173 505
MS.gene070096.t1 AT4G18030 43.627 612 313 11 10 596 5 609 7.25e-172 502
MS.gene070096.t1 AT1G26850 41.925 613 319 13 14 597 11 615 3.11e-166 488
MS.gene070096.t1 AT1G26850 41.925 613 319 13 14 597 11 615 3.11e-166 488
MS.gene070096.t1 AT2G43200 46.493 499 260 7 72 566 91 586 1.51e-162 478
MS.gene070096.t1 AT2G43200 46.493 499 260 7 72 566 91 586 1.51e-162 478
MS.gene070096.t1 AT4G00740 43.144 547 270 13 66 595 77 599 9.53e-158 465
MS.gene070096.t1 AT4G00740 43.144 547 270 13 66 595 77 599 9.53e-158 465
MS.gene070096.t1 AT2G39750 43.750 544 279 11 57 589 164 691 1.06e-149 448
MS.gene070096.t1 AT5G06050 41.758 546 289 11 56 589 135 663 2.55e-146 439
MS.gene070096.t1 AT3G23300 41.774 541 291 8 69 595 76 606 1.44e-145 434
MS.gene070096.t1 AT3G23300 41.774 541 291 8 69 595 76 606 1.44e-145 434
MS.gene070096.t1 AT2G34300 43.609 532 264 12 81 595 250 762 2.18e-144 436
MS.gene070096.t1 AT2G34300 43.609 532 264 12 81 595 250 762 2.18e-144 436
MS.gene070096.t1 AT2G34300 43.609 532 264 12 81 595 250 762 2.18e-144 436
MS.gene070096.t1 AT1G04430 40.582 584 309 13 34 595 51 618 5.64e-144 431
MS.gene070096.t1 AT1G04430 40.582 584 309 13 34 595 51 618 5.64e-144 431
MS.gene070096.t1 AT1G04430 40.582 584 309 13 34 595 51 618 5.64e-144 431
MS.gene070096.t1 AT4G14360 41.590 541 292 8 69 595 73 603 2.65e-142 426
MS.gene070096.t1 AT4G14360 41.590 541 292 8 69 595 73 603 2.65e-142 426
MS.gene070096.t1 AT1G77260 41.293 557 290 13 54 589 115 655 3.99e-141 424
MS.gene070096.t1 AT1G29470 42.857 532 268 13 81 595 250 762 6.29e-141 427
MS.gene070096.t1 AT1G29470 42.857 532 268 13 81 595 250 762 6.29e-141 427
MS.gene070096.t1 AT5G64030 43.100 529 268 11 81 593 308 819 1.13e-139 426
MS.gene070096.t1 AT2G40280 42.724 536 253 15 81 598 90 589 2.59e-137 412
MS.gene070096.t1 AT3G56080 43.238 525 257 14 81 592 114 610 3.22e-137 413
MS.gene070096.t1 AT5G14430 39.500 600 318 14 22 591 21 605 1.52e-136 411
MS.gene070096.t1 AT3G51070 41.308 535 273 12 81 595 381 894 1.91e-135 417
MS.gene070096.t1 AT5G14430 39.000 600 321 14 22 591 21 605 3.42e-134 405
MS.gene070096.t1 AT3G10200 37.124 598 334 13 16 590 10 588 6.91e-130 393
MS.gene070096.t1 AT1G26850 41.429 490 252 11 14 476 11 492 1.04e-127 385
MS.gene070096.t1 AT5G04060 36.529 605 335 12 16 590 12 597 1.75e-124 380
MS.gene070096.t1 AT3G56080 45.197 458 217 13 81 525 114 550 1.05e-123 376
MS.gene070096.t1 AT3G10200 36.007 586 326 13 16 571 10 576 3.34e-121 371
MS.gene070096.t1 AT3G51070 42.174 460 228 11 81 520 381 822 9.33e-118 369
MS.gene070096.t1 AT1G19430 36.243 527 290 15 80 592 230 724 6.77e-110 346
MS.gene070096.t1 AT1G19430 36.243 527 290 15 80 592 230 724 6.77e-110 346
MS.gene070096.t1 AT1G78240 30.972 607 356 16 22 587 92 676 1.23e-93 302
MS.gene070096.t1 AT1G78240 30.972 607 356 16 22 587 92 676 1.23e-93 302
MS.gene070096.t1 AT1G13860 31.588 554 313 11 72 591 81 602 7.52e-93 298
MS.gene070096.t1 AT1G13860 31.588 554 313 11 72 591 81 602 7.52e-93 298
MS.gene070096.t1 AT1G13860 31.588 554 313 11 72 591 81 602 7.52e-93 298
MS.gene070096.t1 AT1G13860 31.588 554 313 11 72 591 81 602 7.52e-93 298
MS.gene070096.t1 AT2G03480 31.915 564 317 14 52 587 66 590 4.81e-85 277
MS.gene070096.t1 AT2G03480 32.092 564 327 15 52 587 66 601 1.21e-84 276
MS.gene070096.t1 AT1G13860 31.828 465 265 9 156 589 1 444 2.36e-78 255
MS.gene070096.t1 AT1G19430 33.924 395 219 13 80 461 230 595 2.64e-64 222
MS.gene070096.t1 AT2G03480 30.588 340 218 7 52 382 66 396 4.11e-45 166

Find 149 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGACCCATCTTTGATTTC+TGG 0.136346 5.4:-17840393 None:intergenic
TTCTTCGTCCCGGAGGATTT+TGG 0.137518 5.4:+17841059 MS.gene070096:CDS
ATGAATGTTGTTTCATCTTA+TGG 0.183938 5.4:+17841622 MS.gene070096:CDS
CTTATCCCATGGACAGAATT+TGG 0.187513 5.4:+17840784 MS.gene070096:CDS
TGAACAAGTGAAATCCTTTC+AGG 0.225038 5.4:-17841427 None:intergenic
TCGAGACTGTCGTCACATTT+TGG 0.252715 5.4:-17841289 None:intergenic
CCCTTCAAACTCCTTTGATA+TGG 0.267872 5.4:+17840744 MS.gene070096:CDS
GGAGAGAAATTTCAATTTCC+TGG 0.292268 5.4:+17840309 MS.gene070096:CDS
GAAGAATTCGGTGAATTTCT+TGG 0.297915 5.4:-17841042 None:intergenic
CTGACCCATCTTTGATTTCT+GGG 0.305843 5.4:-17840392 None:intergenic
CTTGGTGGAGTCTTTAAATC+TGG 0.314276 5.4:+17839697 MS.gene070096:CDS
TTCAACCTTTGAGGCCATTT+CGG 0.329744 5.4:-17841397 None:intergenic
TTGATAATCATTGCTGCATT+CGG 0.332172 5.4:-17839815 None:intergenic
TTTATGTTAGGTTGCTAGTT+GGG 0.339500 5.4:+17840585 MS.gene070096:intron
CTTCAAATTATACAACAAAA+AGG 0.343104 5.4:+17841195 MS.gene070096:CDS
CAACATTCATCTCTACTCTT+TGG 0.346033 5.4:-17840095 None:intergenic
AAAACTACAGGGAGTGTATT+AGG 0.348105 5.4:-17841646 None:intergenic
ATCATAGCAAGCGTTGTCTT+TGG 0.357055 5.4:-17841242 None:intergenic
CCTTGATCAATGATCCTTTG+TGG 0.361183 5.4:+17841596 MS.gene070096:CDS
AAGAAGTTGTTGCCAGATCT+TGG 0.367212 5.4:+17841514 MS.gene070096:CDS
CTACTCTTTGGCCATCTGAT+TGG 0.368686 5.4:-17840083 None:intergenic
CTTGATCAATGATCCTTTGT+GGG 0.371015 5.4:+17841597 MS.gene070096:CDS
ATCTTGTTTGTGCCAAGATC+TGG 0.373912 5.4:-17841526 None:intergenic
CACAAAGAAAACACTGAGTT+TGG 0.376578 5.4:+17842556 MS.gene070096:CDS
TGATAATCATTGCTGCATTC+GGG 0.379226 5.4:-17839814 None:intergenic
CTCTTTGGCCATCTGATTGG+AGG 0.385460 5.4:-17840080 None:intergenic
TTACAGAGATGGAGAAAGTA+TGG 0.391225 5.4:+17839969 MS.gene070096:intron
CGCGGTATCCCAGCAATTCT+TGG 0.393361 5.4:+17840694 MS.gene070096:CDS
TAATCAGCATTGGTTGATAA+AGG 0.396465 5.4:+17840284 MS.gene070096:CDS
CGCTTGTTTCGTTGTTCCAA+TGG 0.398244 5.4:+17841342 MS.gene070096:CDS
GTTAGAGATCGGTTCTTGTT+CGG 0.399701 5.4:-17839631 None:intergenic
GCCCGCCTGGTCGCAAAATC+CGG 0.400319 5.4:-17842459 None:intergenic
ATGGATATGAATACAGCTTA+TGG 0.401394 5.4:+17841559 MS.gene070096:CDS
CAAACTGAACCTGAGCTTCA+TGG 0.406657 5.4:-17840663 None:intergenic
ACGTATTCACCAACACCATT+AGG 0.407310 5.4:-17840348 None:intergenic
ATCCTCCGGGACGAAGAATT+CGG 0.410892 5.4:-17841054 None:intergenic
CTGCATTCGGGAAAACTAAA+GGG 0.412194 5.4:-17839802 None:intergenic
GTTAGAACTGCAATTGATAC+TGG 0.412772 5.4:+17840414 MS.gene070096:CDS
TGTTTGTTAATCCAATCATA+TGG 0.415030 5.4:-17840255 None:intergenic
TACCTATAGACTTACTTTGT+TGG 0.417092 5.4:+17839992 MS.gene070096:CDS
CGGATTATAGCGTGCCCGCC+TGG 0.419332 5.4:-17842472 None:intergenic
GAGATGACACCAAGAATTGC+TGG 0.425210 5.4:-17840703 None:intergenic
CAAATTCTGTCCATGGGATA+AGG 0.432198 5.4:-17840783 None:intergenic
GCCTCACGTACATGCCGAAA+TGG 0.432992 5.4:+17841383 MS.gene070096:CDS
GAAAGGATTTCACTTGTTCA+AGG 0.433009 5.4:+17841430 MS.gene070096:CDS
ATGGAAAAGTACAAGAAATC+AGG 0.433649 5.4:+17841361 MS.gene070096:CDS
GAAGTATGTAATGTTGGAAA+TGG 0.436291 5.4:+17842435 MS.gene070096:CDS
GGAGTGTACCATGCTGAATC+TGG 0.456691 5.4:-17841313 None:intergenic
TGAAGTAGGTCATAGGTTCT+AGG 0.468060 5.4:-17841841 None:intergenic
ACAGGAATGTGCCATATGAT+TGG 0.476125 5.4:+17840244 MS.gene070096:intron
CTGATCCCAGAAATCAAAGA+TGG 0.476198 5.4:+17840387 MS.gene070096:CDS
GGTGCAACATTCAACCTTTG+AGG 0.476749 5.4:-17841406 None:intergenic
GCTGCATTCGGGAAAACTAA+AGG 0.478763 5.4:-17839803 None:intergenic
AACAAGGATCATGAAGCATA+AGG 0.478806 5.4:+17839588 None:intergenic
AGCCCTCGATCGAAAACTAC+AGG 0.479503 5.4:-17841658 None:intergenic
GAGATCGGTTCTTGTTCGGC+TGG 0.481858 5.4:-17839627 None:intergenic
TGAGCTTCATGGTTATCTCT+TGG 0.482556 5.4:-17840652 None:intergenic
TGAAATGAAGTATGTAATGT+TGG 0.482893 5.4:+17842429 MS.gene070096:CDS
ATCGGTTCTTGTTCGGCTGG+TGG 0.487576 5.4:-17839624 None:intergenic
GAATTACCAAATTCTGTCCA+TGG 0.489900 5.4:-17840790 None:intergenic
CTCATAGTTGACTGGTGGAC+CGG 0.491832 5.4:-17841089 None:intergenic
CATCTTGATCCTGAGTTGGA+TGG 0.492062 5.4:-17842625 None:intergenic
AAATTTCAATTTCCTGGTGG+AGG 0.497318 5.4:+17840315 MS.gene070096:CDS
AAAAGGATGACATATATGTA+TGG 0.500938 5.4:+17841212 MS.gene070096:CDS
TTCCAACAAAGTAAGTCTAT+AGG 0.502688 5.4:-17839994 None:intergenic
ATCAGCATGAAGTAGGTCAT+AGG 0.503060 5.4:-17841848 None:intergenic
TGCTTAGTTCCTCCTCCACC+TGG 0.503617 5.4:+17840050 MS.gene070096:CDS
TGACATATATGTATGGCAAA+AGG 0.507120 5.4:+17841219 MS.gene070096:CDS
CTGATTGGAGGTTTGTAACC+AGG 0.512073 5.4:-17840068 None:intergenic
AGTTTCAAACATACCAGTCA+TGG 0.518005 5.4:-17841693 None:intergenic
GTAGAGATGAATGTTGGTAC+AGG 0.518059 5.4:+17840102 MS.gene070096:CDS
TTATGTTAGGTTGCTAGTTG+GGG 0.518421 5.4:+17840586 MS.gene070096:intron
TTATCGGTACCTTCCATGAC+TGG 0.519417 5.4:+17841680 MS.gene070096:CDS
TAGTTGGGGAGGTGACTTGT+TGG 0.520582 5.4:+17840600 MS.gene070096:CDS
TCAGTCATGATAACAGTAAG+TGG 0.521028 5.4:+17841470 MS.gene070096:CDS
TTTGGAGGATAGGTGTCTCT+AGG 0.521324 5.4:-17841271 None:intergenic
GCCATATCAAAGGAGTTTGA+AGG 0.521561 5.4:-17840745 None:intergenic
ATTTATGTTAGGTTGCTAGT+TGG 0.522656 5.4:+17840584 MS.gene070096:intron
AAAGCGCCTGAGGATTGCTT+AGG 0.523126 5.4:-17839769 None:intergenic
GGACAAAACCCAAAATCCTC+CGG 0.525700 5.4:-17841068 None:intergenic
GGAGGTACTATGTTTCCTAA+TGG 0.527366 5.4:+17840333 MS.gene070096:CDS
AAGAGATAACCATGAAGCTC+AGG 0.528994 5.4:+17840654 MS.gene070096:CDS
TGTTAGGTTGCTAGTTGGGG+AGG 0.529747 5.4:+17840589 MS.gene070096:intron
TTGTCATCTTGATCCTGAGT+TGG 0.530646 5.4:-17842629 None:intergenic
CACCTACGCTCATAGTTGAC+TGG 0.531226 5.4:-17841097 None:intergenic
CTTAATTTGCAAAGCGCCTG+AGG 0.531961 5.4:-17839779 None:intergenic
TCTTCACTGCTGAAAGCCAC+AGG 0.536372 5.4:+17841875 MS.gene070096:CDS
TATGACCTACTTCATGCTGA+TGG 0.537222 5.4:+17841850 MS.gene070096:CDS
GGTTGAATGTTGCACCTGAA+AGG 0.539137 5.4:+17841413 MS.gene070096:CDS
CCACAAAGGATCATTGATCA+AGG 0.542881 5.4:-17841596 None:intergenic
ATGTAATGTTGGAAATGGAC+CGG 0.544880 5.4:+17842440 MS.gene070096:CDS
AAACAAGATAAGAAATGTGA+TGG 0.544976 5.4:+17841540 MS.gene070096:CDS
AACAGAAGTCTAATCAGCAT+TGG 0.548252 5.4:+17840274 MS.gene070096:CDS
TGCCATCGCAACTATTGCGA+AGG 0.549327 5.4:+17842516 MS.gene070096:CDS
TCAAAGGAGTTTGAAGGGAA+AGG 0.552291 5.4:-17840739 None:intergenic
GTCTTTAAATCTGGAAACAA+TGG 0.552619 5.4:+17839706 MS.gene070096:CDS
ACCCTTCGCAATAGTTGCGA+TGG 0.553385 5.4:-17842518 None:intergenic
CAGCATTGGTTGATAAAGGA+AGG 0.557499 5.4:+17840288 MS.gene070096:CDS
ACATGCCGAAATGGCCTCAA+AGG 0.560915 5.4:+17841392 MS.gene070096:CDS
AACTATGAGCGTAGGTGGCG+CGG 0.564106 5.4:+17841103 MS.gene070096:CDS
GGTTTGTAACCAGGTGGAGG+AGG 0.568649 5.4:-17840059 None:intergenic
CCATATCAAAGGAGTTTGAA+GGG 0.568671 5.4:-17840744 None:intergenic
GATTCACCTAAGCAATCCTC+AGG 0.569880 5.4:+17839763 MS.gene070096:CDS
ATCACTATCATTGTTCTGTG+TGG 0.571055 5.4:+17839661 MS.gene070096:CDS
GAGAAATTTCAATTTCCTGG+TGG 0.571653 5.4:+17840312 MS.gene070096:CDS
GGAGGTTTGTAACCAGGTGG+AGG 0.571709 5.4:-17840062 None:intergenic
CCGCAAAATAACTTGACTCT+CGG 0.573098 5.4:-17842492 None:intergenic
CTGTGGCAGCCATCCAACTC+AGG 0.575238 5.4:+17842616 MS.gene070096:CDS
ATGAGCGTAGGTGGCGCGGA+TGG 0.575531 5.4:+17841107 MS.gene070096:CDS
GACAAAACCCAAAATCCTCC+GGG 0.575836 5.4:-17841067 None:intergenic
AGGATCATGAAGCATAAGGA+TGG 0.579185 5.4:+17839592 None:intergenic
AATTACCAAATTCTGTCCAT+GGG 0.580974 5.4:-17840789 None:intergenic
AATACCTTTGGATCTGTGCA+TGG 0.582765 5.4:-17839847 None:intergenic
CTGCAATTGATACTGGTTGT+GGG 0.583160 5.4:+17840421 MS.gene070096:CDS
TACTCCATGCACAGATCCAA+AGG 0.583464 5.4:+17839843 MS.gene070096:CDS
ATTCACCGAATTCTTCGTCC+CGG 0.585958 5.4:+17841049 MS.gene070096:CDS
GCTCTAGATGCCTTATCCCA+TGG 0.586277 5.4:+17840773 MS.gene070096:CDS
CAAAGAGTAGAGATGAATGT+TGG 0.586343 5.4:+17840096 MS.gene070096:CDS
GCCATTTCGGCATGTACGTG+AGG 0.586487 5.4:-17841384 None:intergenic
AGAATCCATCAGCATGAAGT+AGG 0.586900 5.4:-17841855 None:intergenic
CAGTCAACTATGAGCGTAGG+TGG 0.587123 5.4:+17841098 MS.gene070096:CDS
CACCGAATTCTTCGTCCCGG+AGG 0.588572 5.4:+17841052 MS.gene070096:CDS
GGAGGTGACTTGTTGGATCG+AGG 0.592911 5.4:+17840607 MS.gene070096:CDS
ACTATGTTTCCTAATGGTGT+TGG 0.597032 5.4:+17840339 MS.gene070096:CDS
ACTGCAATTGATACTGGTTG+TGG 0.599923 5.4:+17840420 MS.gene070096:CDS
TGATCCCAGAAATCAAAGAT+GGG 0.600174 5.4:+17840388 MS.gene070096:CDS
AGATGACACCAAGAATTGCT+GGG 0.605182 5.4:-17840702 None:intergenic
CTATTGCGAAGGGTATGAGA+TGG 0.620603 5.4:+17842527 MS.gene070096:CDS
CTACGCTCATAGTTGACTGG+TGG 0.622282 5.4:-17841094 None:intergenic
GTTACAAACCTCCAATCAGA+TGG 0.623877 5.4:+17840072 MS.gene070096:CDS
TGAATCAAGTGATTTCTGAA+TGG 0.624350 5.4:-17839746 None:intergenic
TGATCGCCGCAGTTAGAGAT+CGG 0.633373 5.4:-17839642 None:intergenic
GTTCAGTTTGCTCTCGAGCG+CGG 0.634804 5.4:+17840676 MS.gene070096:CDS
GATATGAATACAGCTTATGG+AGG 0.639260 5.4:+17841562 MS.gene070096:CDS
GCCATCGCAACTATTGCGAA+GGG 0.648197 5.4:+17842517 MS.gene070096:CDS
ATTGGAGGTTTGTAACCAGG+TGG 0.648361 5.4:-17840065 None:intergenic
GTCTCGAACCAGATTCAGCA+TGG 0.653935 5.4:+17841305 MS.gene070096:CDS
AGAGCAATGAGCCATATCAA+AGG 0.654623 5.4:-17840755 None:intergenic
ACAACATTCATAACCCACAA+AGG 0.657750 5.4:-17841610 None:intergenic
TCAAACATACCAGTCATGGA+AGG 0.663945 5.4:-17841689 None:intergenic
GCCCTCGATCGAAAACTACA+GGG 0.664815 5.4:-17841657 None:intergenic
TGCAATTGATACTGGTTGTG+GGG 0.666739 5.4:+17840422 MS.gene070096:CDS
ACAACGAAACAAGCGCGAAG+CGG 0.670028 5.4:-17841334 None:intergenic
CACCAGTCAACTATGAGCGT+AGG 0.677148 5.4:+17841095 MS.gene070096:CDS
CAAGAACCGATCTCTAACTG+CGG 0.688972 5.4:+17839636 MS.gene070096:CDS
GCGCGGATGGAACACAACGG+TGG 0.695965 5.4:+17841120 MS.gene070096:CDS
GGAAACATAGTACCTCCACC+AGG 0.698372 5.4:-17840327 None:intergenic
CAGATTTAAAGACTCCACCA+AGG 0.721559 5.4:-17839696 None:intergenic
GTGGCGCGGATGGAACACAA+CGG 0.793897 5.4:+17841117 MS.gene070096:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACACTTATAATAAGA+TGG + chr5.4:17841968-17841987 MS.gene070096:intron 15.0%
!! TTAGTATTAATTAATACCTT+TGG - chr5.4:17839862-17839881 None:intergenic 15.0%
!! TTTGTATTTATACTTATTAC+CGG + chr5.4:17840498-17840517 MS.gene070096:intron 15.0%
!!! CTTTTACTTATTTTTACAAT+TGG + chr5.4:17840467-17840486 MS.gene070096:intron 15.0%
!! AAGTATAAATACAAAGAAAG+CGG - chr5.4:17840493-17840512 None:intergenic 20.0%
!! CTTCAAATTATACAACAAAA+AGG + chr5.4:17841195-17841214 MS.gene070096:CDS 20.0%
!! TGTTGAAAAAGAAAAGATAT+TGG + chr5.4:17842579-17842598 MS.gene070096:CDS 20.0%
!!! TATTCATATCTTATGCTTTT+AGG + chr5.4:17841007-17841026 MS.gene070096:intron 20.0%
!!! TGTTTTTGTGTTATATCATA+TGG + chr5.4:17841750-17841769 MS.gene070096:intron 20.0%
!!! TTATATCATATGGTTTTCTT+CGG + chr5.4:17841760-17841779 MS.gene070096:intron 20.0%
! AAAACATAGCATAAACAGAA+AGG - chr5.4:17840864-17840883 None:intergenic 25.0%
! AAAAGGATGACATATATGTA+TGG + chr5.4:17841212-17841231 MS.gene070096:CDS 25.0%
! AAACAAGATAAGAAATGTGA+TGG + chr5.4:17841540-17841559 MS.gene070096:CDS 25.0%
! AACTCTAAATATGAACCATA+AGG + chr5.4:17841712-17841731 MS.gene070096:intron 25.0%
! TGAAATGAAGTATGTAATGT+TGG + chr5.4:17842429-17842448 MS.gene070096:CDS 25.0%
! TTCATAAACACATAACCTTA+TGG - chr5.4:17841730-17841749 None:intergenic 25.0%
!! AATTTTCATCCATTAACTGA+TGG + chr5.4:17840981-17841000 MS.gene070096:intron 25.0%
!! ATTTTCATCCATTAACTGAT+GGG + chr5.4:17840982-17841001 MS.gene070096:intron 25.0%
!! TGTTTGTTAATCCAATCATA+TGG - chr5.4:17840258-17840277 None:intergenic 25.0%
!! TTTGTTGTAAGATAAGTCTA+AGG + chr5.4:17842092-17842111 MS.gene070096:intron 25.0%
!!! AAGCTGTTTTCAGAAAATAA+CGG - chr5.4:17842020-17842039 None:intergenic 25.0%
!!! ATCTATACTTCAATTTTGAC+AGG + chr5.4:17841912-17841931 MS.gene070096:intron 25.0%
!!! ATGAATGTTGTTTCATCTTA+TGG + chr5.4:17841622-17841641 MS.gene070096:CDS 25.0%
!!! GCATTTTGAAAATCTTGTTT+AGG - chr5.4:17842364-17842383 None:intergenic 25.0%
!!! TCTACGAAAATTTTGATGTT+TGG + chr5.4:17839888-17839907 MS.gene070096:intron 25.0%
!!! TTTTCATAAACTGTCTTGTT+TGG + chr5.4:17840937-17840956 MS.gene070096:intron 25.0%
AATTACCAAATTCTGTCCAT+GGG - chr5.4:17840792-17840811 None:intergenic 30.0%
ACATAACTCCGATTTATGTT+AGG + chr5.4:17840573-17840592 MS.gene070096:intron 30.0%
ACTAGCAACCTAACATAAAT+CGG - chr5.4:17840584-17840603 None:intergenic 30.0%
ATGAAACTGTTTCATTATGC+TGG - chr5.4:17840898-17840917 None:intergenic 30.0%
ATGGATATGAATACAGCTTA+TGG + chr5.4:17841559-17841578 MS.gene070096:CDS 30.0%
CATTCTTTCCTCTCAAAAAT+CGG - chr5.4:17840032-17840051 None:intergenic 30.0%
GAAGTATGTAATGTTGGAAA+TGG + chr5.4:17842435-17842454 MS.gene070096:CDS 30.0%
GTCTTTAAATCTGGAAACAA+TGG + chr5.4:17839706-17839725 MS.gene070096:CDS 30.0%
GTGTTACATGAATAAATGAC+AGG + chr5.4:17840226-17840245 MS.gene070096:intron 30.0%
TAACATAAATCGGAGTTATG+TGG - chr5.4:17840574-17840593 None:intergenic 30.0%
TACCTATAGACTTACTTTGT+TGG + chr5.4:17839992-17840011 MS.gene070096:CDS 30.0%
TGAATATTCCCATCAGTTAA+TGG - chr5.4:17840993-17841012 None:intergenic 30.0%
TGAATCAAGTGATTTCTGAA+TGG - chr5.4:17839749-17839768 None:intergenic 30.0%
TGACATATATGTATGGCAAA+AGG + chr5.4:17841219-17841238 MS.gene070096:CDS 30.0%
TGTTAGTTCATTGTTGTGTA+TGG + chr5.4:17840529-17840548 MS.gene070096:intron 30.0%
TTCCAACAAAGTAAGTCTAT+AGG - chr5.4:17839997-17840016 None:intergenic 30.0%
! ATGGAAAAGTACAAGAAATC+AGG + chr5.4:17841361-17841380 MS.gene070096:CDS 30.0%
! ATTTATGTTAGGTTGCTAGT+TGG + chr5.4:17840584-17840603 MS.gene070096:intron 30.0%
! ATTTTATGCTATAAGCGCTT+AGG + chr5.4:17842320-17842339 MS.gene070096:intron 30.0%
! GATTTCTTGTACTTTTCCAT+TGG - chr5.4:17841361-17841380 None:intergenic 30.0%
! TCATATCTTATGCTTTTAGG+TGG + chr5.4:17841010-17841029 MS.gene070096:intron 30.0%
! TTGATAATCATTGCTGCATT+CGG - chr5.4:17839818-17839837 None:intergenic 30.0%
! TTTATGTTAGGTTGCTAGTT+GGG + chr5.4:17840585-17840604 MS.gene070096:intron 30.0%
!! ATAACGGATAACCTATAGAT+TGG - chr5.4:17842004-17842023 None:intergenic 30.0%
!! TAATCAGCATTGGTTGATAA+AGG + chr5.4:17840284-17840303 MS.gene070096:CDS 30.0%
AAATTTCAATTTCCTGGTGG+AGG + chr5.4:17840315-17840334 MS.gene070096:CDS 35.0%
AACAGAAGTCTAATCAGCAT+TGG + chr5.4:17840274-17840293 MS.gene070096:CDS 35.0%
ACAACATTCATAACCCACAA+AGG - chr5.4:17841613-17841632 None:intergenic 35.0%
ACTATGTTTCCTAATGGTGT+TGG + chr5.4:17840339-17840358 MS.gene070096:CDS 35.0%
AGTTTCAAACATACCAGTCA+TGG - chr5.4:17841696-17841715 None:intergenic 35.0%
ATCACTATCATTGTTCTGTG+TGG + chr5.4:17839661-17839680 MS.gene070096:CDS 35.0%
ATGTAATGTTGGAAATGGAC+CGG + chr5.4:17842440-17842459 MS.gene070096:CDS 35.0%
CAAAGAGTAGAGATGAATGT+TGG + chr5.4:17840096-17840115 MS.gene070096:CDS 35.0%
CAACATTCATCTCTACTCTT+TGG - chr5.4:17840098-17840117 None:intergenic 35.0%
CACAAAGAAAACACTGAGTT+TGG + chr5.4:17842556-17842575 MS.gene070096:CDS 35.0%
CCATATCAAAGGAGTTTGAA+GGG - chr5.4:17840747-17840766 None:intergenic 35.0%
CTTGATCAATGATCCTTTGT+GGG + chr5.4:17841597-17841616 MS.gene070096:CDS 35.0%
GAAAGGATTTCACTTGTTCA+AGG + chr5.4:17841430-17841449 MS.gene070096:CDS 35.0%
GAATTACCAAATTCTGTCCA+TGG - chr5.4:17840793-17840812 None:intergenic 35.0%
GAGAAATTTCAATTTCCTGG+TGG + chr5.4:17840312-17840331 MS.gene070096:CDS 35.0%
GATATGAATACAGCTTATGG+AGG + chr5.4:17841562-17841581 MS.gene070096:CDS 35.0%
GGAGAGAAATTTCAATTTCC+TGG + chr5.4:17840309-17840328 MS.gene070096:CDS 35.0%
GTCAAACTGTTCCAATCTAT+AGG + chr5.4:17841990-17842009 MS.gene070096:intron 35.0%
GTTAGAACTGCAATTGATAC+TGG + chr5.4:17840414-17840433 MS.gene070096:CDS 35.0%
TCAGTCATGATAACAGTAAG+TGG + chr5.4:17841470-17841489 MS.gene070096:CDS 35.0%
TGAACAAGTGAAATCCTTTC+AGG - chr5.4:17841430-17841449 None:intergenic 35.0%
TGATAATCATTGCTGCATTC+GGG - chr5.4:17839817-17839836 None:intergenic 35.0%
TGATCCCAGAAATCAAAGAT+GGG + chr5.4:17840388-17840407 MS.gene070096:CDS 35.0%
TTACAGAGATGGAGAAAGTA+TGG + chr5.4:17839969-17839988 MS.gene070096:intron 35.0%
TTAGGCTGTTTATCCAAACT+TGG + chr5.4:17842338-17842357 MS.gene070096:intron 35.0%
! AAAACTACAGGGAGTGTATT+AGG - chr5.4:17841649-17841668 None:intergenic 35.0%
! AATCTTGTTTAGGCCAAGTT+TGG - chr5.4:17842354-17842373 None:intergenic 35.0%
! CATGGATGATTTTACAGAGA+TGG + chr5.4:17839958-17839977 MS.gene070096:intron 35.0%
! GAAGAATTCGGTGAATTTCT+TGG - chr5.4:17841045-17841064 None:intergenic 35.0%
! TGTGGTTTTTCATTCTACCT+TGG + chr5.4:17839679-17839698 MS.gene070096:CDS 35.0%
! TTATGTTAGGTTGCTAGTTG+GGG + chr5.4:17840586-17840605 MS.gene070096:intron 35.0%
!!! TGTTGATTGAGTTTTGAGCA+TGG + chr5.4:17839940-17839959 MS.gene070096:intron 35.0%
AAGAAGTTGTTGCCAGATCT+TGG + chr5.4:17841514-17841533 MS.gene070096:CDS 40.0%
AAGAGATAACCATGAAGCTC+AGG + chr5.4:17840654-17840673 MS.gene070096:CDS 40.0%
AATACCTTTGGATCTGTGCA+TGG - chr5.4:17839850-17839869 None:intergenic 40.0%
ACAGGAATGTGCCATATGAT+TGG + chr5.4:17840244-17840263 MS.gene070096:intron 40.0%
ACGTATTCACCAACACCATT+AGG - chr5.4:17840351-17840370 None:intergenic 40.0%
AGAATCCATCAGCATGAAGT+AGG - chr5.4:17841858-17841877 None:intergenic 40.0%
AGAGCAATGAGCCATATCAA+AGG - chr5.4:17840758-17840777 None:intergenic 40.0%
AGATGACACCAAGAATTGCT+GGG - chr5.4:17840705-17840724 None:intergenic 40.0%
ATCAGCATGAAGTAGGTCAT+AGG - chr5.4:17841851-17841870 None:intergenic 40.0%
ATGAACTAACACGTAGACAC+CGG - chr5.4:17840520-17840539 None:intergenic 40.0%
ATTGAGTGCATATTCACCTG+TGG - chr5.4:17841894-17841913 None:intergenic 40.0%
CAAATTCTGTCCATGGGATA+AGG - chr5.4:17840786-17840805 None:intergenic 40.0%
CAGATTTAAAGACTCCACCA+AGG - chr5.4:17839699-17839718 None:intergenic 40.0%
CCACAAAGGATCATTGATCA+AGG - chr5.4:17841599-17841618 None:intergenic 40.0%
CCCTTCAAACTCCTTTGATA+TGG + chr5.4:17840744-17840763 MS.gene070096:CDS 40.0%
CCGCAAAATAACTTGACTCT+CGG - chr5.4:17842495-17842514 None:intergenic 40.0%
CCTTGATCAATGATCCTTTG+TGG + chr5.4:17841596-17841615 MS.gene070096:CDS 40.0%
CTGATCCCAGAAATCAAAGA+TGG + chr5.4:17840387-17840406 MS.gene070096:CDS 40.0%
CTGCATTCGGGAAAACTAAA+GGG - chr5.4:17839805-17839824 None:intergenic 40.0%
CTTATCCCATGGACAGAATT+TGG + chr5.4:17840784-17840803 MS.gene070096:CDS 40.0%
CTTGGTGGAGTCTTTAAATC+TGG + chr5.4:17839697-17839716 MS.gene070096:CDS 40.0%
CTTTCCTCTCAAAAATCGGA+GGG - chr5.4:17840028-17840047 None:intergenic 40.0%
GATAAGTCTAAGGAGCTGTT+TGG + chr5.4:17842102-17842121 MS.gene070096:intron 40.0%
GCCATATCAAAGGAGTTTGA+AGG - chr5.4:17840748-17840767 None:intergenic 40.0%
GCTTGTTTGAGCTTATCTAC+TGG + chr5.4:17842129-17842148 MS.gene070096:intron 40.0%
GTAGAGATGAATGTTGGTAC+AGG + chr5.4:17840102-17840121 MS.gene070096:CDS 40.0%
GTTACAAACCTCCAATCAGA+TGG + chr5.4:17840072-17840091 MS.gene070096:CDS 40.0%
TATGACCTACTTCATGCTGA+TGG + chr5.4:17841850-17841869 MS.gene070096:CDS 40.0%
TCAAACATACCAGTCATGGA+AGG - chr5.4:17841692-17841711 None:intergenic 40.0%
TCAAAGGAGTTTGAAGGGAA+AGG - chr5.4:17840742-17840761 None:intergenic 40.0%
TCTTTCCTCTCAAAAATCGG+AGG - chr5.4:17840029-17840048 None:intergenic 40.0%
TGAAGTAGGTCATAGGTTCT+AGG - chr5.4:17841844-17841863 None:intergenic 40.0%
TGAGCTTCATGGTTATCTCT+TGG - chr5.4:17840655-17840674 None:intergenic 40.0%
TTGTGAGATTGCTCTAACAG+TGG + chr5.4:17842389-17842408 MS.gene070096:intron 40.0%
! ACTGACCCATCTTTGATTTC+TGG - chr5.4:17840396-17840415 None:intergenic 40.0%
! ACTGCAATTGATACTGGTTG+TGG + chr5.4:17840420-17840439 MS.gene070096:CDS 40.0%
! AGTCTGTTTGAGAGAGGTTT+TGG + chr5.4:17842166-17842185 MS.gene070096:intron 40.0%
! ATCATAGCAAGCGTTGTCTT+TGG - chr5.4:17841245-17841264 None:intergenic 40.0%
! ATCTTGTTTGTGCCAAGATC+TGG - chr5.4:17841529-17841548 None:intergenic 40.0%
! CTGACCCATCTTTGATTTCT+GGG - chr5.4:17840395-17840414 None:intergenic 40.0%
! CTGCAATTGATACTGGTTGT+GGG + chr5.4:17840421-17840440 MS.gene070096:CDS 40.0%
! GGTTTTTCATTCTACCTTGG+TGG + chr5.4:17839682-17839701 MS.gene070096:CDS 40.0%
! GTTAGAGATCGGTTCTTGTT+CGG - chr5.4:17839634-17839653 None:intergenic 40.0%
! TCGTGATGACTTGTGCTATT+AGG + chr5.4:17841797-17841816 MS.gene070096:intron 40.0%
! TGCAATTGATACTGGTTGTG+GGG + chr5.4:17840422-17840441 MS.gene070096:CDS 40.0%
!! CAGCATTGGTTGATAAAGGA+AGG + chr5.4:17840288-17840307 MS.gene070096:CDS 40.0%
!! CCGAGAGTCAAGTTATTTTG+CGG + chr5.4:17842492-17842511 MS.gene070096:CDS 40.0%
!! GGAGGTACTATGTTTCCTAA+TGG + chr5.4:17840333-17840352 MS.gene070096:CDS 40.0%
!! TTCAACCTTTGAGGCCATTT+CGG - chr5.4:17841400-17841419 None:intergenic 40.0%
ATTCACCGAATTCTTCGTCC+CGG + chr5.4:17841049-17841068 MS.gene070096:CDS 45.0%
ATTGGAGGTTTGTAACCAGG+TGG - chr5.4:17840068-17840087 None:intergenic 45.0%
CAAACTGAACCTGAGCTTCA+TGG - chr5.4:17840666-17840685 None:intergenic 45.0%
CAAGAACCGATCTCTAACTG+CGG + chr5.4:17839636-17839655 MS.gene070096:CDS 45.0%
CGCTTGTTTCGTTGTTCCAA+TGG + chr5.4:17841342-17841361 MS.gene070096:CDS 45.0%
CTACTCTTTGGCCATCTGAT+TGG - chr5.4:17840086-17840105 None:intergenic 45.0%
CTGATTGGAGGTTTGTAACC+AGG - chr5.4:17840071-17840090 None:intergenic 45.0%
GACAAAACCCAAAATCCTCC+GGG - chr5.4:17841070-17841089 None:intergenic 45.0%
GAGATGACACCAAGAATTGC+TGG - chr5.4:17840706-17840725 None:intergenic 45.0%
GATTCACCTAAGCAATCCTC+AGG + chr5.4:17839763-17839782 MS.gene070096:CDS 45.0%
GCTGCATTCGGGAAAACTAA+AGG - chr5.4:17839806-17839825 None:intergenic 45.0%
GGACAAAACCCAAAATCCTC+CGG - chr5.4:17841071-17841090 None:intergenic 45.0%
GGTGCAACATTCAACCTTTG+AGG - chr5.4:17841409-17841428 None:intergenic 45.0%
GGTTGAATGTTGCACCTGAA+AGG + chr5.4:17841413-17841432 MS.gene070096:CDS 45.0%
GTCTAAGGAGCTGTTTGGAT+TGG + chr5.4:17842107-17842126 MS.gene070096:intron 45.0%
TACTCCATGCACAGATCCAA+AGG + chr5.4:17839843-17839862 MS.gene070096:CDS 45.0%
TCTCAAAAATCGGAGGGCAA+TGG - chr5.4:17840022-17840041 None:intergenic 45.0%
TGGTATGCCAGAAAAAGCTG+TGG + chr5.4:17842599-17842618 MS.gene070096:CDS 45.0%
TTATCGGTACCTTCCATGAC+TGG + chr5.4:17841680-17841699 MS.gene070096:CDS 45.0%
TTTGGAGGATAGGTGTCTCT+AGG - chr5.4:17841274-17841293 None:intergenic 45.0%
! AGACTGTCGTCACATTTTGG+AGG - chr5.4:17841289-17841308 None:intergenic 45.0%
! CATCTTGATCCTGAGTTGGA+TGG - chr5.4:17842628-17842647 None:intergenic 45.0%
! CTATTGCGAAGGGTATGAGA+TGG + chr5.4:17842527-17842546 MS.gene070096:CDS 45.0%
! GTTTTCGATCGAGGGCTTAT+CGG + chr5.4:17841664-17841683 MS.gene070096:CDS 45.0%
! TCCCTGTAGTTTTCGATCGA+GGG + chr5.4:17841656-17841675 MS.gene070096:CDS 45.0%
! TCGAGACTGTCGTCACATTT+TGG - chr5.4:17841292-17841311 None:intergenic 45.0%
!! ATTGCCCTCCGATTTTTGAG+AGG + chr5.4:17840021-17840040 MS.gene070096:CDS 45.0%
!! CTTAATTTGCAAAGCGCCTG+AGG - chr5.4:17839782-17839801 None:intergenic 45.0%
!! GTCGTCACATTTTGGAGGAT+AGG - chr5.4:17841284-17841303 None:intergenic 45.0%
!!! GGAGGATTTTGGGTTTTGTC+CGG + chr5.4:17841070-17841089 MS.gene070096:CDS 45.0%
ACAACGAAACAAGCGCGAAG+CGG - chr5.4:17841337-17841356 None:intergenic 50.0%
ACATGCCGAAATGGCCTCAA+AGG + chr5.4:17841392-17841411 MS.gene070096:CDS 50.0%
ACCCTTCGCAATAGTTGCGA+TGG - chr5.4:17842521-17842540 None:intergenic 50.0%
AGCCCTCGATCGAAAACTAC+AGG - chr5.4:17841661-17841680 None:intergenic 50.0%
ATCCTCCGGGACGAAGAATT+CGG - chr5.4:17841057-17841076 None:intergenic 50.0%
CACCAGTCAACTATGAGCGT+AGG + chr5.4:17841095-17841114 MS.gene070096:CDS 50.0%
CACCTACGCTCATAGTTGAC+TGG - chr5.4:17841100-17841119 None:intergenic 50.0%
CAGTCAACTATGAGCGTAGG+TGG + chr5.4:17841098-17841117 MS.gene070096:CDS 50.0%
CTACGCTCATAGTTGACTGG+TGG - chr5.4:17841097-17841116 None:intergenic 50.0%
CTCTTTGGCCATCTGATTGG+AGG - chr5.4:17840083-17840102 None:intergenic 50.0%
CTTGCGAGTCTGTTTGAGAG+AGG + chr5.4:17842160-17842179 MS.gene070096:intron 50.0%
GCCATCGCAACTATTGCGAA+GGG + chr5.4:17842517-17842536 MS.gene070096:CDS 50.0%
GCCCTCGATCGAAAACTACA+GGG - chr5.4:17841660-17841679 None:intergenic 50.0%
GGAAACATAGTACCTCCACC+AGG - chr5.4:17840330-17840349 None:intergenic 50.0%
GGAGTGTACCATGCTGAATC+TGG - chr5.4:17841316-17841335 None:intergenic 50.0%
GTCTCGAACCAGATTCAGCA+TGG + chr5.4:17841305-17841324 MS.gene070096:CDS 50.0%
TCTTCACTGCTGAAAGCCAC+AGG + chr5.4:17841875-17841894 MS.gene070096:CDS 50.0%
TGATCGCCGCAGTTAGAGAT+CGG - chr5.4:17839645-17839664 None:intergenic 50.0%
TGCCATCGCAACTATTGCGA+AGG + chr5.4:17842516-17842535 MS.gene070096:CDS 50.0%
! AAAGCGCCTGAGGATTGCTT+AGG - chr5.4:17839772-17839791 None:intergenic 50.0%
! CTCATAGTTGACTGGTGGAC+CGG - chr5.4:17841092-17841111 None:intergenic 50.0%
! CTCCCTGTAGTTTTCGATCG+AGG + chr5.4:17841655-17841674 MS.gene070096:CDS 50.0%
! GCTCTAGATGCCTTATCCCA+TGG + chr5.4:17840773-17840792 MS.gene070096:CDS 50.0%
! TAGTTGGGGAGGTGACTTGT+TGG + chr5.4:17840600-17840619 MS.gene070096:CDS 50.0%
! TCTTCGTCCCGGAGGATTTT+GGG + chr5.4:17841060-17841079 MS.gene070096:CDS 50.0%
! TGTTAGGTTGCTAGTTGGGG+AGG + chr5.4:17840589-17840608 MS.gene070096:intron 50.0%
! TTCTTCGTCCCGGAGGATTT+TGG + chr5.4:17841059-17841078 MS.gene070096:CDS 50.0%
!! ATGGCTGCCACAGCTTTTTC+TGG - chr5.4:17842609-17842628 None:intergenic 50.0%
AACTATGAGCGTAGGTGGCG+CGG + chr5.4:17841103-17841122 MS.gene070096:CDS 55.0%
CGCGGTATCCCAGCAATTCT+TGG + chr5.4:17840694-17840713 MS.gene070096:CDS 55.0%
GCCATTTCGGCATGTACGTG+AGG - chr5.4:17841387-17841406 None:intergenic 55.0%
GCCTCACGTACATGCCGAAA+TGG + chr5.4:17841383-17841402 MS.gene070096:CDS 55.0%
GGAGGTTTGTAACCAGGTGG+AGG - chr5.4:17840065-17840084 None:intergenic 55.0%
GGTTTGTAACCAGGTGGAGG+AGG - chr5.4:17840062-17840081 None:intergenic 55.0%
TGCTTAGTTCCTCCTCCACC+TGG + chr5.4:17840050-17840069 MS.gene070096:CDS 55.0%
! ATCGGTTCTTGTTCGGCTGG+TGG - chr5.4:17839627-17839646 None:intergenic 55.0%
! ATGGACCGGATTTTGCGACC+AGG + chr5.4:17842454-17842473 MS.gene070096:CDS 55.0%
! GAGATCGGTTCTTGTTCGGC+TGG - chr5.4:17839630-17839649 None:intergenic 55.0%
! GTTCAGTTTGCTCTCGAGCG+CGG + chr5.4:17840676-17840695 MS.gene070096:CDS 55.0%
!! GGAGGTGACTTGTTGGATCG+AGG + chr5.4:17840607-17840626 MS.gene070096:CDS 55.0%
CACCGAATTCTTCGTCCCGG+AGG + chr5.4:17841052-17841071 MS.gene070096:CDS 60.0%
CTGTGGCAGCCATCCAACTC+AGG + chr5.4:17842616-17842635 MS.gene070096:CDS 60.0%
GTGGCGCGGATGGAACACAA+CGG + chr5.4:17841117-17841136 MS.gene070096:CDS 60.0%
! ACCGGATTTTGCGACCAGGC+GGG + chr5.4:17842458-17842477 MS.gene070096:CDS 60.0%
! GACCGGATTTTGCGACCAGG+CGG + chr5.4:17842457-17842476 MS.gene070096:CDS 60.0%
ATGAGCGTAGGTGGCGCGGA+TGG + chr5.4:17841107-17841126 MS.gene070096:CDS 65.0%
CGGATTATAGCGTGCCCGCC+TGG - chr5.4:17842475-17842494 None:intergenic 65.0%
GCCCGCCTGGTCGCAAAATC+CGG - chr5.4:17842462-17842481 None:intergenic 65.0%
GCGCGGATGGAACACAACGG+TGG + chr5.4:17841120-17841139 MS.gene070096:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 17839598 17842648 17839598 ID=MS.gene070096
chr5.4 mRNA 17839598 17842648 17839598 ID=MS.gene070096.t1;Parent=MS.gene070096
chr5.4 exon 17839598 17839864 17839598 ID=MS.gene070096.t1.exon1;Parent=MS.gene070096.t1
chr5.4 CDS 17839598 17839864 17839598 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17839975 17840123 17839975 ID=MS.gene070096.t1.exon2;Parent=MS.gene070096.t1
chr5.4 CDS 17839975 17840123 17839975 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17840248 17840443 17840248 ID=MS.gene070096.t1.exon3;Parent=MS.gene070096.t1
chr5.4 CDS 17840248 17840443 17840248 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17840595 17840805 17840595 ID=MS.gene070096.t1.exon4;Parent=MS.gene070096.t1
chr5.4 CDS 17840595 17840805 17840595 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17841029 17841701 17841029 ID=MS.gene070096.t1.exon5;Parent=MS.gene070096.t1
chr5.4 CDS 17841029 17841701 17841029 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17841819 17841896 17841819 ID=MS.gene070096.t1.exon6;Parent=MS.gene070096.t1
chr5.4 CDS 17841819 17841896 17841819 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
chr5.4 exon 17842426 17842648 17842426 ID=MS.gene070096.t1.exon7;Parent=MS.gene070096.t1
chr5.4 CDS 17842426 17842648 17842426 ID=cds.MS.gene070096.t1;Parent=MS.gene070096.t1
Gene Sequence

>MS.gene070096

ATGAAGCATAAGGATGGAAAACTGATCCACCAGCCGAACAAGAACCGATCTCTAACTGCGGCGATCACTATCATTGTTCTGTGTGGTTTTTCATTCTACCTTGGTGGAGTCTTTAAATCTGGAAACAATGGTGTTGATGTCATCAACACCATTCAGAAATCACTTGATTCACCTAAGCAATCCTCAGGCGCTTTGCAAATTAAGCCCTTTAGTTTTCCCGAATGCAGCAATGATTATCAAGACTATACTCCATGCACAGATCCAAAGGTATTAATTAATACTAATAGTTTTCTACGAAAATTTTGATGTTTGGAATTTTTTTAGAAGAAAATTTCATTATTTTGTTGATTGAGTTTTGAGCATGGATGATTTTACAGAGATGGAGAAAGTATGGTACCTATAGACTTACTTTGTTGGAACGCCATTGCCCTCCGATTTTTGAGAGGAAAGAATGCTTAGTTCCTCCTCCACCTGGTTACAAACCTCCAATCAGATGGCCAAAGAGTAGAGATGAATGTTGGTACAGGTATGTAATAGATGATTTATAAGTTGAAATAATTATAGTTTGAATTGATTTTATGTTGCTTGCTACATCGATATATATATATATTGTTCAAGTTTTTAATTTGTGTTACATGAATAAATGACAGGAATGTGCCATATGATTGGATTAACAAACAGAAGTCTAATCAGCATTGGTTGATAAAGGAAGGAGAGAAATTTCAATTTCCTGGTGGAGGTACTATGTTTCCTAATGGTGTTGGTGAATACGTTGATTTAATGCAAGATCTGATCCCAGAAATCAAAGATGGGTCAGTTAGAACTGCAATTGATACTGGTTGTGGGGTGAGTTTTATCTTTCTTTTTTACTTTTACTTATTTTTACAATTGGCCGCTTTCTTTGTATTTATACTTATTACCGGTGTCTACGTGTTAGTTCATTGTTGTGTATGGTGTATGTGTTAATTGATATCCACATAACTCCGATTTATGTTAGGTTGCTAGTTGGGGAGGTGACTTGTTGGATCGAGGCGTTCTAACAATTTCTCTCGCGCCAAGAGATAACCATGAAGCTCAGGTTCAGTTTGCTCTCGAGCGCGGTATCCCAGCAATTCTTGGTGTCATCTCTACACAAAGACTTCCTTTCCCTTCAAACTCCTTTGATATGGCTCATTGCTCTAGATGCCTTATCCCATGGACAGAATTTGGTAATTCTTCAATGCATTTTAAAATTTTCAGCTCTTAAAACAGTTTTTTTTTTTTCCTTTCTGTTTATGCTATGTTTTCATGAACTTTACCAGCATAATGAAACAGTTTCATTCATCTAAGTTATAAATTATTTTCATAAACTGTCTTGTTTGGAGCTGATATAAGTTCAGTTGAAATTTTCATCCATTAACTGATGGGAATATTCATATCTTATGCTTTTAGGTGGAATTTATCTCCAAGAAATTCACCGAATTCTTCGTCCCGGAGGATTTTGGGTTTTGTCCGGTCCACCAGTCAACTATGAGCGTAGGTGGCGCGGATGGAACACAACGGTGGAAGAGCAAAGATCAGATTATGAAAAGCTACAAGATTTGCTCACATCAATGTGCTTCAAATTATACAACAAAAAGGATGACATATATGTATGGCAAAAGGCCAAAGACAACGCTTGCTATGATAAGCTTCCTAGAGACACCTATCCTCCAAAATGTGACGACAGTCTCGAACCAGATTCAGCATGGTACACTCCGCTTCGCGCTTGTTTCGTTGTTCCAATGGAAAAGTACAAGAAATCAGGCCTCACGTACATGCCGAAATGGCCTCAAAGGTTGAATGTTGCACCTGAAAGGATTTCACTTGTTCAAGGTTCTAGTTCTAGTACTTTCAGTCATGATAACAGTAAGTGGAAAAAGCGCATTCAGCACTACAAGAAGTTGTTGCCAGATCTTGGCACAAACAAGATAAGAAATGTGATGGATATGAATACAGCTTATGGAGGTTTCGCTGCTTCCTTGATCAATGATCCTTTGTGGGTTATGAATGTTGTTTCATCTTATGGTCCTAATACACTCCCTGTAGTTTTCGATCGAGGGCTTATCGGTACCTTCCATGACTGGTATGTTTGAAACTCTAAATATGAACCATAAGGTTATGTGTTTATGAATGTTTTTGTGTTATATCATATGGTTTTCTTCGGTAATGATTTGAATTTCGTGATGACTTGTGCTATTAGGTGTGAAGCTTTTTCAACATATCCTAGAACCTATGACCTACTTCATGCTGATGGATTCTTCACTGCTGAAAGCCACAGGTGAATATGCACTCAATCTATACTTCAATTTTGACAGGTTAATTAATCAGTTCTTGAACAAGCATTAATAATATAAACACTTATAATAAGATGGTCAAACTGTTCCAATCTATAGGTTATCCGTTATTTTCTGAAAACAGCTTATCAAATCAGAAGTTAATTTTATAAGTTCTGTTGAACACTTTCACAGTTGCTTTTGTTGTAAGATAAGTCTAAGGAGCTGTTTGGATTGGCTTGTTTGAGCTTATCTACTGGCAAAAACACTTGCGAGTCTGTTTGAGAGAGGTTTTGGAAACAACTTATAACATGTCAATAAGTTGTTTTTAGTTTATTTCTATAAGCTCTCTTTTATAGCTTATGAAAACAAGTTGACTTTATTTTATCTTTTATAGCAGAAAGAGCTTATACATATCATATGATAAAATTTTATGCTATAAGCGCTTAGGCTGTTTATCCAAACTTGGCCTAAACAAGATTTTCAAAATGCACTCATTGTGAGATTGCTCTAACAGTGGTTGTTACTTTGCAGATGTGAAATGAAGTATGTAATGTTGGAAATGGACCGGATTTTGCGACCAGGCGGGCACGCTATAATCCGAGAGTCAAGTTATTTTGCGGATGCCATCGCAACTATTGCGAAGGGTATGAGATGGATATGTCACAAAGAAAACACTGAGTTTGGTGTTGAAAAAGAAAAGATATTGGTATGCCAGAAAAAGCTGTGGCAGCCATCCAACTCAGGATCAAGATGA
Protein sequence

>MS.gene070096.t1

MKHKDGKLIHQPNKNRSLTAAITIIVLCGFSFYLGGVFKSGNNGVDVINTIQKSLDSPKQSSGALQIKPFSFPECSNDYQDYTPCTDPKRWRKYGTYRLTLLERHCPPIFERKECLVPPPPGYKPPIRWPKSRDECWYRNVPYDWINKQKSNQHWLIKEGEKFQFPGGGTMFPNGVGEYVDLMQDLIPEIKDGSVRTAIDTGCGVASWGGDLLDRGVLTISLAPRDNHEAQVQFALERGIPAILGVISTQRLPFPSNSFDMAHCSRCLIPWTEFGGIYLQEIHRILRPGGFWVLSGPPVNYERRWRGWNTTVEEQRSDYEKLQDLLTSMCFKLYNKKDDIYVWQKAKDNACYDKLPRDTYPPKCDDSLEPDSAWYTPLRACFVVPMEKYKKSGLTYMPKWPQRLNVAPERISLVQGSSSSTFSHDNSKWKKRIQHYKKLLPDLGTNKIRNVMDMNTAYGGFAASLINDPLWVMNVVSSYGPNTLPVVFDRGLIGTFHDWCEAFSTYPRTYDLLHADGFFTAESHRCEMKYVMLEMDRILRPGGHAIIRESSYFADAIATIAKGMRWICHKENTEFGVEKEKILVCQKKLWQPSNSGSR