Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070160.t1 | XP_003612583.1 | 99 | 615 | 6 | 0 | 1 | 615 | 97 | 711 | 0.00E+00 | 1176.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070160.t1 | F4KD71 | 78.6 | 607 | 125 | 1 | 1 | 602 | 93 | 699 | 9.4e-280 | 963.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070160.t1 | G7K6S1 | 99.0 | 615 | 6 | 0 | 1 | 615 | 97 | 711 | 0.0e+00 | 1176.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene070160 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene050026 | MS.gene070160 | 0.808544 | 2.94E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene070160 | 0.810506 | 1.11E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene070160 | 0.806573 | 7.71E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene070160 | 0.800269 | 1.56E-48 | -1.69E-46 |
| MS.gene051744 | MS.gene070160 | 0.809763 | 1.61E-50 | -1.69E-46 |
| MS.gene052208 | MS.gene070160 | 0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene070160 | 0.808365 | 3.21E-50 | -1.69E-46 |
| MS.gene053643 | MS.gene070160 | 0.800841 | 1.19E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene070160 | 0.820491 | 6.67E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene070160 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene058037 | MS.gene070160 | 0.803063 | 4.17E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene070160 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene070160 | 0.817853 | 2.66E-52 | -1.69E-46 |
| MS.gene060373 | MS.gene070160 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene070160 | 0.812672 | 3.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070160.t1 | MTR_5g026640 | 99.024 | 615 | 6 | 0 | 1 | 615 | 97 | 711 | 0.0 | 1226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070160.t1 | AT5G45380 | 78.583 | 607 | 125 | 1 | 1 | 602 | 93 | 699 | 0.0 | 965 |
Find 0 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATATTAAAATCATC+AGG | - | 37927:2755-2774 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAATGTTTTTGTT+AGG | + | 37927:3850-3869 | MS.gene070160:intron | 10.0% |
| !! | AAATACAAAGTATGATTAAA+GGG | + | 37927:1743-1762 | MS.gene070160:intron | 15.0% |
| !! | AAATTCGTTTAAATAATCTA+CGG | + | 37927:1607-1626 | MS.gene070160:intron | 15.0% |
| !! | GAAATTAAAGAAATTTCAAT+TGG | + | 37927:2193-2212 | MS.gene070160:intron | 15.0% |
| !! | TAAATGAATCAAAATGTTAA+TGG | - | 37927:1236-1255 | None:intergenic | 15.0% |
| !!! | ATCGAAAAATTTCAATTTTA+GGG | - | 37927:2220-2239 | None:intergenic | 15.0% |
| !!! | TATTTTAGCTATATAAAAAG+TGG | - | 37927:1715-1734 | None:intergenic | 15.0% |
| !! | AACATTGATATATCGTAATT+TGG | + | 37927:456-475 | MS.gene070160:intron | 20.0% |
| !! | AATCATCAGGTAAAATAATA+AGG | - | 37927:2742-2761 | None:intergenic | 20.0% |
| !! | AATTTAGTCCATAAAATTGT+AGG | - | 37927:2357-2376 | None:intergenic | 20.0% |
| !! | ACAACTGTTATAATAGAAAA+AGG | - | 37927:1808-1827 | None:intergenic | 20.0% |
| !! | ATATATCGTAATTTGGAAAA+TGG | + | 37927:463-482 | MS.gene070160:intron | 20.0% |
| !! | CATGACAAATATAATTGTAA+CGG | + | 37927:890-909 | MS.gene070160:CDS | 20.0% |
| !! | GAAATACAAAGTATGATTAA+AGG | + | 37927:1742-1761 | MS.gene070160:intron | 20.0% |
| !! | GTTTAAATGTGAAATGTTTA+GGG | + | 37927:1844-1863 | MS.gene070160:intron | 20.0% |
| !! | TAAAGAAGAAAAGTTAACAA+GGG | + | 37927:3327-3346 | MS.gene070160:CDS | 20.0% |
| !! | TTAAAGAAGAAAAGTTAACA+AGG | + | 37927:3326-3345 | MS.gene070160:CDS | 20.0% |
| !! | TTATACAGTGATATGATTAA+AGG | + | 37927:1148-1167 | MS.gene070160:intron | 20.0% |
| !! | TTTGTTTATTCATTATCACA+GGG | + | 37927:4128-4147 | MS.gene070160:intron | 20.0% |
| !!! | AAACAAGTAAATAGCTATTT+TGG | + | 37927:2431-2450 | MS.gene070160:intron | 20.0% |
| !!! | AAGTTTGTTAAGAGAAATTA+GGG | + | 37927:3776-3795 | MS.gene070160:intron | 20.0% |
| !!! | ATTAAGAATTTTCTATTTCC+GGG | + | 37927:2289-2308 | MS.gene070160:intron | 20.0% |
| !!! | CTAGAAAAAAACACAATTTT+GGG | - | 37927:3895-3914 | None:intergenic | 20.0% |
| !!! | CTATTTTGATAGTTATACTA+TGG | + | 37927:3386-3405 | MS.gene070160:CDS | 20.0% |
| !!! | GATCGAAAAATTTCAATTTT+AGG | - | 37927:2221-2240 | None:intergenic | 20.0% |
| !!! | GATTAAGAATTTTCTATTTC+CGG | + | 37927:2288-2307 | MS.gene070160:intron | 20.0% |
| !!! | TACAATTTTATGGACTAAAT+TGG | + | 37927:2356-2375 | MS.gene070160:intron | 20.0% |
| !!! | TCGAAAAATTTCAATTTTAG+GGG | - | 37927:2219-2238 | None:intergenic | 20.0% |
| !!! | TTAATGTTCTATATGCTTTT+AGG | + | 37927:2402-2421 | MS.gene070160:intron | 20.0% |
| !!! | TTCTGAAGTATATTTTCTAA+TGG | + | 37927:3826-3845 | MS.gene070160:intron | 20.0% |
| !!! | TTCTTTTGTTAGTAGTTTTA+CGG | + | 37927:2522-2541 | MS.gene070160:intron | 20.0% |
| ! | AAATTCCCCAATAAGTTATT+TGG | - | 37927:3552-3571 | None:intergenic | 25.0% |
| ! | ACTAACAAAAGAAATCCTTA+GGG | - | 37927:2515-2534 | None:intergenic | 25.0% |
| ! | ACTGAAATAACCAATTCAAA+AGG | + | 37927:2257-2276 | MS.gene070160:intron | 25.0% |
| ! | ATACATCAATAGTGACAATT+AGG | + | 37927:3480-3499 | MS.gene070160:intron | 25.0% |
| ! | CTTCATCCAAATAACTTATT+GGG | + | 37927:3543-3562 | MS.gene070160:intron | 25.0% |
| ! | GGTTTAAATGTGAAATGTTT+AGG | + | 37927:1843-1862 | MS.gene070160:intron | 25.0% |
| ! | GTTTGTTTATTCATTATCAC+AGG | + | 37927:4127-4146 | MS.gene070160:intron | 25.0% |
| ! | TAAAGTTTGGATTGTGAAAT+GGG | + | 37927:3351-3370 | MS.gene070160:CDS | 25.0% |
| ! | TACTAACAAAAGAAATCCTT+AGG | - | 37927:2516-2535 | None:intergenic | 25.0% |
| ! | TATAATATAAACTCCTAACC+TGG | - | 37927:403-422 | None:intergenic | 25.0% |
| ! | TATAATTCAAACTACTACGA+GGG | - | 37927:3967-3986 | None:intergenic | 25.0% |
| ! | TGTAACTTACATAAAAAGCA+TGG | - | 37927:2094-2113 | None:intergenic | 25.0% |
| ! | TTATAATAGAAAAAGGTGAC+AGG | - | 37927:1801-1820 | None:intergenic | 25.0% |
| ! | TTATAATTCAAACTACTACG+AGG | - | 37927:3968-3987 | None:intergenic | 25.0% |
| ! | TTCATCCAAATAACTTATTG+GGG | + | 37927:3544-3563 | MS.gene070160:intron | 25.0% |
| ! | TTCATTTAGTGGTAAATCTA+GGG | - | 37927:1992-2011 | None:intergenic | 25.0% |
| ! | TTGATTCATTTATGTGTACA+TGG | + | 37927:1244-1263 | MS.gene070160:intron | 25.0% |
| ! | TTGTCTACTCTAGATAAAAT+TGG | + | 37927:2138-2157 | MS.gene070160:intron | 25.0% |
| ! | TTGTTTATTCATTATCACAG+GGG | + | 37927:4129-4148 | MS.gene070160:intron | 25.0% |
| ! | TTTCATTTAGTGGTAAATCT+AGG | - | 37927:1993-2012 | None:intergenic | 25.0% |
| ! | TTTGTAAGTCGATACATTAT+GGG | - | 37927:2487-2506 | None:intergenic | 25.0% |
| !! | GCTAGAAAAAAACACAATTT+TGG | - | 37927:3896-3915 | None:intergenic | 25.0% |
| !!! | CAAGTTTGTTAAGAGAAATT+AGG | + | 37927:3775-3794 | MS.gene070160:intron | 25.0% |
| !!! | TAGACAAAAGTATTTCCAAA+AGG | - | 37927:2125-2144 | None:intergenic | 25.0% |
| AAAGTTTGGATTGTGAAATG+GGG | + | 37927:3352-3371 | MS.gene070160:CDS | 30.0% | |
| AACAGGTAACATATCTGATT+TGG | + | 37927:4063-4082 | MS.gene070160:intron | 30.0% | |
| AACTCATAAGGGATACTTAT+TGG | + | 37927:1903-1922 | MS.gene070160:CDS | 30.0% | |
| AAGATAAACCTTGATACAAG+TGG | + | 37927:3142-3161 | MS.gene070160:CDS | 30.0% | |
| AATGTATCTGAATGTGTGTT+TGG | - | 37927:2626-2645 | None:intergenic | 30.0% | |
| AATGTTTGTTTACCTCAGTT+GGG | + | 37927:830-849 | MS.gene070160:intron | 30.0% | |
| ACAAATTACTGTGGTTGAAA+AGG | + | 37927:3276-3295 | MS.gene070160:CDS | 30.0% | |
| ACATTCCTAGAATAACAGTT+TGG | - | 37927:4264-4283 | None:intergenic | 30.0% | |
| ACTCATAAGGGATACTTATT+GGG | + | 37927:1904-1923 | MS.gene070160:CDS | 30.0% | |
| AGCTATATACATTCTGTCAT+AGG | + | 37927:1047-1066 | MS.gene070160:CDS | 30.0% | |
| AGTTTGTCAAATCTCAAAAC+AGG | + | 37927:4046-4065 | MS.gene070160:intron | 30.0% | |
| ATAAAATTGGAATTGCCAGA+GGG | + | 37927:2151-2170 | MS.gene070160:intron | 30.0% | |
| ATTAACATTGTTGGCAACTT+TGG | + | 37927:1551-1570 | MS.gene070160:CDS | 30.0% | |
| CTAAAGTTTGGATTGTGAAA+TGG | + | 37927:3350-3369 | MS.gene070160:CDS | 30.0% | |
| CTGTTTCAATTCCTATGTAA+AGG | + | 37927:4425-4444 | MS.gene070160:CDS | 30.0% | |
| GACAATGTTTCACACATTTA+AGG | + | 37927:2678-2697 | MS.gene070160:intron | 30.0% | |
| GCTTCATCCAAATAACTTAT+TGG | + | 37927:3542-3561 | MS.gene070160:intron | 30.0% | |
| GTGATTTATTGTTAACGTCA+TGG | - | 37927:1665-1684 | None:intergenic | 30.0% | |
| GTTTGTAAGTCGATACATTA+TGG | - | 37927:2488-2507 | None:intergenic | 30.0% | |
| TACTACCAAACAAATTACTG+TGG | + | 37927:3267-3286 | MS.gene070160:CDS | 30.0% | |
| TACTTAACAATGCTTAGTTC+AGG | + | 37927:1509-1528 | MS.gene070160:CDS | 30.0% | |
| TATGATCAGGTAATGCTATT+TGG | + | 37927:512-531 | MS.gene070160:intron | 30.0% | |
| TATTATGTCACAGTGTAAAC+AGG | + | 37927:645-664 | MS.gene070160:intron | 30.0% | |
| TCTCAATGTTAATACTGTTG+AGG | - | 37927:1098-1117 | None:intergenic | 30.0% | |
| TCTGTTACAAAGATAGAGTA+TGG | + | 37927:3118-3137 | MS.gene070160:CDS | 30.0% | |
| TTAGTATGACAAATACGTCA+TGG | - | 37927:3744-3763 | None:intergenic | 30.0% | |
| TTGTAATTCTCAAATGATCC+CGG | - | 37927:2310-2329 | None:intergenic | 30.0% | |
| TTGTCATGAAGCAGAAAAAA+AGG | - | 37927:878-897 | None:intergenic | 30.0% | |
| TTTACCAATAATAGAGAGCT+GGG | + | 37927:4231-4250 | MS.gene070160:CDS | 30.0% | |
| TTTACCACTAAATGAAAGTG+AGG | + | 37927:1996-2015 | MS.gene070160:CDS | 30.0% | |
| ! | ACATAAAAAGCATGGTAAGA+AGG | - | 37927:2086-2105 | None:intergenic | 30.0% |
| ! | AGAAAATCCTCAAAGTATCA+AGG | + | 37927:2879-2898 | MS.gene070160:CDS | 30.0% |
| ! | ATTTTCTTTCCACTTGCATT+AGG | - | 37927:2866-2885 | None:intergenic | 30.0% |
| ! | GATTGATGCCTACAATTTTA+TGG | + | 37927:2346-2365 | MS.gene070160:intron | 30.0% |
| ! | GGAAAATGGAAAGTGTAATA+AGG | + | 37927:477-496 | MS.gene070160:intron | 30.0% |
| ! | GGTAATGCTATTTGGAATTA+TGG | + | 37927:520-539 | MS.gene070160:intron | 30.0% |
| ! | TCACAACAATCCTTTTGAAT+TGG | - | 37927:2270-2289 | None:intergenic | 30.0% |
| ! | TTTGGGATCATTAACATTGT+TGG | + | 37927:1542-1561 | MS.gene070160:CDS | 30.0% |
| ! | TTTTCTTTCCACTTGCATTA+GGG | - | 37927:2865-2884 | None:intergenic | 30.0% |
| !! | AACCTTGTTTCTATACTAAC+TGG | + | 37927:3190-3209 | MS.gene070160:CDS | 30.0% |
| !! | AACTCTTTGATTTGTACAGA+AGG | - | 37927:3650-3669 | None:intergenic | 30.0% |
| !! | AGTTGTTTTGTCACTATTGA+TGG | + | 37927:1822-1841 | MS.gene070160:intron | 30.0% |
| !! | ATTTTCAGTGCATGTTGTTT+TGG | + | 37927:1322-1341 | MS.gene070160:intron | 30.0% |
| !! | TATATAGCTTGCTAAGAATG+TGG | - | 37927:1036-1055 | None:intergenic | 30.0% |
| !! | TTAAAATTTTGATACCCTCG+AGG | + | 37927:2647-2666 | MS.gene070160:intron | 30.0% |
| !! | TTCAACCACAGTAATTTGTT+TGG | - | 37927:3275-3294 | None:intergenic | 30.0% |
| !!! | TGTGGTTTTTTAGAAATGTG+AGG | + | 37927:3704-3723 | MS.gene070160:intron | 30.0% |
| AAGCGATTGTAAACAACACT+CGG | - | 37927:1395-1414 | None:intergenic | 35.0% | |
| AATGCAATTGGAGCAATTCT+TGG | + | 37927:3055-3074 | MS.gene070160:CDS | 35.0% | |
| ACAGTATTTGGTTGTGTTCT+TGG | + | 37927:3079-3098 | MS.gene070160:CDS | 35.0% | |
| ACCATCCAAACTGTTATTCT+AGG | + | 37927:4256-4275 | MS.gene070160:CDS | 35.0% | |
| ACTAAATTACTTGAACCCTC+TGG | - | 37927:2169-2188 | None:intergenic | 35.0% | |
| AGTTAACAAGGGCTAAAGTT+TGG | + | 37927:3338-3357 | MS.gene070160:CDS | 35.0% | |
| ATATAAACTCCTAACCTGGA+TGG | - | 37927:399-418 | None:intergenic | 35.0% | |
| ATGTTTGTTTACCTCAGTTG+GGG | + | 37927:831-850 | MS.gene070160:intron | 35.0% | |
| CAAGTTGCATACAATCATAC+AGG | + | 37927:4327-4346 | MS.gene070160:CDS | 35.0% | |
| CAATGTTTGTTTACCTCAGT+TGG | + | 37927:829-848 | MS.gene070160:intron | 35.0% | |
| CATTTCTTCCACTTGTATCA+AGG | - | 37927:3153-3172 | None:intergenic | 35.0% | |
| CTATTGCTTTCATGCTTCTA+TGG | + | 37927:3023-3042 | MS.gene070160:CDS | 35.0% | |
| CTCCAGTTAGTATAGAAACA+AGG | - | 37927:3195-3214 | None:intergenic | 35.0% | |
| CTTTACCAATAATAGAGAGC+TGG | + | 37927:4230-4249 | MS.gene070160:CDS | 35.0% | |
| GAGACTTTACTTGCTTGAAA+AGG | + | 37927:4366-4385 | MS.gene070160:CDS | 35.0% | |
| GATAAAATTGGAATTGCCAG+AGG | + | 37927:2150-2169 | MS.gene070160:intron | 35.0% | |
| GATATCATATGTGCATAACG+AGG | - | 37927:2825-2844 | None:intergenic | 35.0% | |
| GCAATTCTTGGAACAGTATT+TGG | + | 37927:3067-3086 | MS.gene070160:CDS | 35.0% | |
| GCAGTTATACTAAACAAAGC+AGG | + | 37927:2941-2960 | MS.gene070160:CDS | 35.0% | |
| GCTGAGATTTAACTATGATC+AGG | + | 37927:499-518 | MS.gene070160:intron | 35.0% | |
| GCTGTTGTAAATGCATTAAC+TGG | + | 37927:936-955 | MS.gene070160:CDS | 35.0% | |
| GCTTACATTGTCAACAAACA+CGG | - | 37927:1579-1598 | None:intergenic | 35.0% | |
| GGCTATCGAGATTAAAAGAA+AGG | + | 37927:541-560 | MS.gene070160:CDS | 35.0% | |
| GTAATTGTCTATACACTAGC+CGG | + | 37927:999-1018 | MS.gene070160:CDS | 35.0% | |
| GTATAGACAATTACTCCAAG+TGG | - | 37927:993-1012 | None:intergenic | 35.0% | |
| GTGTAATTTCAAATCACGTG+TGG | + | 37927:3686-3705 | MS.gene070160:intron | 35.0% | |
| GTGTTCTTGGAATAATCACA+TGG | + | 37927:3092-3111 | MS.gene070160:CDS | 35.0% | |
| TAAAGGGATAGCATGATGAA+AGG | + | 37927:1759-1778 | MS.gene070160:intron | 35.0% | |
| TACATAAACCCTAATGCAAG+TGG | + | 37927:2854-2873 | MS.gene070160:CDS | 35.0% | |
| TCAATAGTGACAATTAGGCT+TGG | + | 37927:3485-3504 | MS.gene070160:intron | 35.0% | |
| TCCTAGAATAACAGTTTGGA+TGG | - | 37927:4260-4279 | None:intergenic | 35.0% | |
| TCTTCTTTAAACTCTTCCAC+TGG | - | 37927:3316-3335 | None:intergenic | 35.0% | |
| TGGAGAAAAGCAAATGCAAT+TGG | + | 37927:3043-3062 | MS.gene070160:CDS | 35.0% | |
| TGTGTGAAATTGTCAAAGCT+CGG | + | 37927:582-601 | MS.gene070160:CDS | 35.0% | |
| TTAACAATGCTTAGTTCAGG+TGG | + | 37927:1512-1531 | MS.gene070160:CDS | 35.0% | |
| ! | AAACTACTACGAGGGATTTT+GGG | - | 37927:3959-3978 | None:intergenic | 35.0% |
| ! | AATCCTCAAAGTATCAAGGA+TGG | + | 37927:2883-2902 | MS.gene070160:CDS | 35.0% |
| ! | AGTTACAATCTGCTACCTTT+TGG | + | 37927:2107-2126 | MS.gene070160:intron | 35.0% |
| ! | CATAGAAGCATGAAAGCAAT+AGG | - | 37927:3025-3044 | None:intergenic | 35.0% |
| ! | GCACATCTAAAATGACTTGT+GGG | + | 37927:3919-3938 | MS.gene070160:intron | 35.0% |
| ! | GTGAAATGTTTAGGGCTATT+GGG | + | 37927:1852-1871 | MS.gene070160:intron | 35.0% |
| ! | TGCACATCTAAAATGACTTG+TGG | + | 37927:3918-3937 | MS.gene070160:intron | 35.0% |
| ! | TGTGAAATGTTTAGGGCTAT+TGG | + | 37927:1851-1870 | MS.gene070160:intron | 35.0% |
| !! | AACAAAGCAGGAGTATCTTT+AGG | + | 37927:2953-2972 | MS.gene070160:CDS | 35.0% |
| !! | CTTGTTTCTATACTAACTGG+AGG | + | 37927:3193-3212 | MS.gene070160:CDS | 35.0% |
| !! | TATCCCTTATGAGTTGATGA+AGG | - | 37927:1898-1917 | None:intergenic | 35.0% |
| !! | TTGGCTAGTCATTTTGGTAT+TGG | - | 37927:2607-2626 | None:intergenic | 35.0% |
| !!! | CAAAGGGTACTTCTTTTTCT+GGG | + | 37927:4159-4178 | MS.gene070160:CDS | 35.0% |
| !!! | CTCTGAGGCTTCTAATTTTT+TGG | - | 37927:4398-4417 | None:intergenic | 35.0% |
| !!! | GGTTTTTTAGAAATGTGAGG+TGG | + | 37927:3707-3726 | MS.gene070160:intron | 35.0% |
| !!! | TTTGGTCATTTTTGTGTACC+TGG | + | 37927:1340-1359 | MS.gene070160:CDS | 35.0% |
| AAGATCCTACATCACACCAT+GGG | + | 37927:1447-1466 | MS.gene070160:CDS | 40.0% | |
| AAGCAACATTAGAGCTTTGC+AGG | - | 37927:331-350 | None:intergenic | 40.0% | |
| AAGGCCTTCATCAACTCATA+AGG | + | 37927:1891-1910 | MS.gene070160:CDS | 40.0% | |
| AAGTAAAGTCTCTCTGCTTC+TGG | - | 37927:4358-4377 | None:intergenic | 40.0% | |
| AGGCCTTCATCAACTCATAA+GGG | + | 37927:1892-1911 | MS.gene070160:CDS | 40.0% | |
| AGTGATGTGGCCAAAGAAAA+TGG | - | 37927:1952-1971 | None:intergenic | 40.0% | |
| ATATGTGCATAACGAGGACA+CGG | - | 37927:2819-2838 | None:intergenic | 40.0% | |
| ATTGTCACAATAGTCCTCGA+GGG | - | 37927:2664-2683 | None:intergenic | 40.0% | |
| CAACCATCCTTGATACTTTG+AGG | - | 37927:2889-2908 | None:intergenic | 40.0% | |
| CAATCAAAACTCCCATTGCA+AGG | - | 37927:2988-3007 | None:intergenic | 40.0% | |
| CATAAGGGATACTTATTGGG+AGG | + | 37927:1907-1926 | MS.gene070160:CDS | 40.0% | |
| CCTGTTAGTGGAAATCACAA+AGG | + | 37927:1482-1501 | MS.gene070160:CDS | 40.0% | |
| CCTTTGTGATTTCCACTAAC+AGG | - | 37927:1485-1504 | None:intergenic | 40.0% | |
| CTAGGGTTTGGATGTTTCAT+GGG | + | 37927:2911-2930 | MS.gene070160:CDS | 40.0% | |
| CTGTAAAACCTATTTAGCGC+AGG | + | 37927:722-741 | MS.gene070160:intron | 40.0% | |
| GACTTACAAACACAACCCTA+AGG | + | 37927:2497-2516 | MS.gene070160:intron | 40.0% | |
| GCTATTGAAGTCCTTGCTTT+AGG | + | 37927:3520-3539 | MS.gene070160:intron | 40.0% | |
| GTATCCCAGCTCTCTATTAT+TGG | - | 37927:4238-4257 | None:intergenic | 40.0% | |
| GTTTACAAATGACAGACTCG+TGG | + | 37927:4282-4301 | MS.gene070160:CDS | 40.0% | |
| TATACTTCTAGCAGTGAGCT+TGG | + | 37927:1365-1384 | MS.gene070160:CDS | 40.0% | |
| TATCAAGGATGGTTGTCCTA+GGG | + | 37927:2894-2913 | MS.gene070160:CDS | 40.0% | |
| TCACACACAGTATGAGCATA+TGG | - | 37927:569-588 | None:intergenic | 40.0% | |
| TGAAACAGATTGTTGCTCTG+AGG | - | 37927:4413-4432 | None:intergenic | 40.0% | |
| TGGATTGTGAAATGGGGTAT+TGG | + | 37927:3358-3377 | MS.gene070160:CDS | 40.0% | |
| TGTGTGCATCAGAACTGATT+TGG | - | 37927:3583-3602 | None:intergenic | 40.0% | |
| TGTTTGTTTACCTCAGTTGG+GGG | + | 37927:832-851 | MS.gene070160:intron | 40.0% | |
| TTTGGATGAAGCCTAAAGCA+AGG | - | 37927:3534-3553 | None:intergenic | 40.0% | |
| TTTGTACAGAAGGACACATC+TGG | - | 37927:3640-3659 | None:intergenic | 40.0% | |
| ! | ATGCTGTTTGTAGCATGTTG+TGG | + | 37927:3224-3243 | MS.gene070160:CDS | 40.0% |
| ! | CAAACTACTACGAGGGATTT+TGG | - | 37927:3960-3979 | None:intergenic | 40.0% |
| ! | CATCTAAAATGACTTGTGGG+TGG | + | 37927:3922-3941 | MS.gene070160:intron | 40.0% |
| ! | CTAATGTTGCTTGGGAGTAT+GGG | + | 37927:339-358 | MS.gene070160:CDS | 40.0% |
| ! | GCAAAGCTCTAATGTTGCTT+GGG | + | 37927:331-350 | MS.gene070160:CDS | 40.0% |
| ! | GTAACGGCTATGTTACTTCT+TGG | + | 37927:906-925 | MS.gene070160:CDS | 40.0% |
| ! | GTACTCCAATCATAGTTCTG+AGG | - | 37927:3250-3269 | None:intergenic | 40.0% |
| ! | GTGTGCATCAGAACTGATTT+GGG | - | 37927:3582-3601 | None:intergenic | 40.0% |
| ! | TAATGTTGCTTGGGAGTATG+GGG | + | 37927:340-359 | MS.gene070160:CDS | 40.0% |
| ! | TCTAATGTTGCTTGGGAGTA+TGG | + | 37927:338-357 | MS.gene070160:CDS | 40.0% |
| ! | TGCAAAGCTCTAATGTTGCT+TGG | + | 37927:330-349 | MS.gene070160:CDS | 40.0% |
| ! | TTTTCTTTGGCCACATCACT+TGG | + | 37927:1952-1971 | MS.gene070160:CDS | 40.0% |
| !! | AAGCAGGAGTATCTTTAGGA+TGG | + | 37927:2957-2976 | MS.gene070160:CDS | 40.0% |
| !! | AGTTCAGGTGGCTTAGTTTT+TGG | + | 37927:1524-1543 | MS.gene070160:CDS | 40.0% |
| !! | CTTGCAATGGGAGTTTTGAT+TGG | + | 37927:2986-3005 | MS.gene070160:CDS | 40.0% |
| !! | GCTAGCTTTCTAATACCACT+TGG | + | 37927:975-994 | MS.gene070160:CDS | 40.0% |
| !! | GTGTGTTTGGCTAGTCATTT+TGG | - | 37927:2613-2632 | None:intergenic | 40.0% |
| !! | GTTCAGGTGGCTTAGTTTTT+GGG | + | 37927:1525-1544 | MS.gene070160:CDS | 40.0% |
| !! | TGTGCATCAGAACTGATTTG+GGG | - | 37927:3581-3600 | None:intergenic | 40.0% |
| !!! | GCAAAGGGTACTTCTTTTTC+TGG | + | 37927:4158-4177 | MS.gene070160:CDS | 40.0% |
| !!! | GTTTGCAGTGCCATTTTCTT+TGG | + | 37927:1939-1958 | MS.gene070160:CDS | 40.0% |
| ACAAGGTTTCCAGCAAGCAT+TGG | - | 37927:3178-3197 | None:intergenic | 45.0% | |
| AGAAATGCACCAATGCTTGC+TGG | + | 37927:3166-3185 | MS.gene070160:CDS | 45.0% | |
| AGGATGGATGTACCTTGCAA+TGG | + | 37927:2973-2992 | MS.gene070160:CDS | 45.0% | |
| ATCAAAGCTACAGCAGTAGC+TGG | - | 37927:2042-2061 | None:intergenic | 45.0% | |
| ATTGTCTATACACTAGCCGG+TGG | + | 37927:1002-1021 | MS.gene070160:CDS | 45.0% | |
| CAAGATCCTACATCACACCA+TGG | + | 37927:1446-1465 | MS.gene070160:CDS | 45.0% | |
| CAATCTTGTGGTCCTGTTAG+TGG | + | 37927:1470-1489 | MS.gene070160:CDS | 45.0% | |
| CATGGTGTGATGTAGGATCT+TGG | - | 37927:1448-1467 | None:intergenic | 45.0% | |
| CATTGTCACAATAGTCCTCG+AGG | - | 37927:2665-2684 | None:intergenic | 45.0% | |
| CCACTAAATGAAAGTGAGGC+AGG | + | 37927:2000-2019 | MS.gene070160:CDS | 45.0% | |
| CCATGAAACATCCAAACCCT+AGG | - | 37927:2913-2932 | None:intergenic | 45.0% | |
| CCTAGGGTTTGGATGTTTCA+TGG | + | 37927:2910-2929 | MS.gene070160:CDS | 45.0% | |
| CCTGCCTCACTTTCATTTAG+TGG | - | 37927:2003-2022 | None:intergenic | 45.0% | |
| GACTTCAATAGCCTCTTTCC+TGG | - | 37927:3512-3531 | None:intergenic | 45.0% | |
| GCAACTCAAAGTTACCTGCA+GGG | - | 37927:3426-3445 | None:intergenic | 45.0% | |
| GCTGTGATTGCTATAGGATG+GGG | + | 37927:4181-4200 | MS.gene070160:CDS | 45.0% | |
| GGATGGATGTACCTTGCAAT+GGG | + | 37927:2974-2993 | MS.gene070160:CDS | 45.0% | |
| GGCTGTGATTGCTATAGGAT+GGG | + | 37927:4180-4199 | MS.gene070160:CDS | 45.0% | |
| GTATCAAGGATGGTTGTCCT+AGG | + | 37927:2893-2912 | MS.gene070160:CDS | 45.0% | |
| TGCAACTCAAAGTTACCTGC+AGG | - | 37927:3427-3446 | None:intergenic | 45.0% | |
| TGTGGCCTCAGAACTATGAT+TGG | + | 37927:3242-3261 | MS.gene070160:CDS | 45.0% | |
| TTCTGGGCTGTGATTGCTAT+AGG | + | 37927:4175-4194 | MS.gene070160:CDS | 45.0% | |
| TTGGCCACATCACTTGGTTT+GGG | + | 37927:1958-1977 | MS.gene070160:CDS | 45.0% | |
| TTTGGCCACATCACTTGGTT+TGG | + | 37927:1957-1976 | MS.gene070160:CDS | 45.0% | |
| ! | ACGGCTATGTTACTTCTTGG+TGG | + | 37927:909-928 | MS.gene070160:CDS | 45.0% |
| ! | CACTGCTAGAAGTATAGACC+AGG | - | 37927:1361-1380 | None:intergenic | 45.0% |
| !! | AGCTACTGCTGTAGCTTTGA+TGG | + | 37927:2041-2060 | MS.gene070160:CDS | 45.0% |
| !! | ATCAGAACTGATTTGGGGGT+GGG | - | 37927:3576-3595 | None:intergenic | 45.0% |
| !! | CTACTGCTGTAGCTTTGATG+GGG | + | 37927:2043-2062 | MS.gene070160:CDS | 45.0% |
| !! | GCTACTGCTGTAGCTTTGAT+GGG | + | 37927:2042-2061 | MS.gene070160:CDS | 45.0% |
| !! | GGAAAAGACTGATTTGCCAG+TGG | + | 37927:3297-3316 | MS.gene070160:CDS | 45.0% |
| !! | GTGCATCAGAACTGATTTGG+GGG | - | 37927:3580-3599 | None:intergenic | 45.0% |
| !!! | ATTTTAATATATTTATTATC+AGG | + | 37927:2759-2778 | MS.gene070160:intron | 5.0% |
| !!! | TTTTAATATATTTATTATCA+GGG | + | 37927:2760-2779 | MS.gene070160:intron | 5.0% |
| AAAGCTACAGCAGTAGCTGG+AGG | - | 37927:2039-2058 | None:intergenic | 50.0% | |
| AATGAAAGTGAGGCAGGTCG+TGG | + | 37927:2006-2025 | MS.gene070160:CDS | 50.0% | |
| ACTCAAAGTTACCTGCAGGG+AGG | - | 37927:3423-3442 | None:intergenic | 50.0% | |
| ACTTATTGGGAGGTCTGGTC+TGG | + | 37927:1917-1936 | MS.gene070160:CDS | 50.0% | |
| AGGATGGTTGTCCTAGGGTT+TGG | + | 37927:2899-2918 | MS.gene070160:CDS | 50.0% | |
| ATCACAGGGGAGTTCAGCAA+AGG | + | 37927:4142-4161 | MS.gene070160:intron | 50.0% | |
| CTCAAAGTTACCTGCAGGGA+GGG | - | 37927:3422-3441 | None:intergenic | 50.0% | |
| GATTGCCCATGGTGTGATGT+AGG | - | 37927:1455-1474 | None:intergenic | 50.0% | |
| GCTATAGGATGGGGTACAGT+AGG | + | 37927:4190-4209 | MS.gene070160:CDS | 50.0% | |
| GCTCCACTAGCATACCAGAA+AGG | - | 37927:374-393 | None:intergenic | 50.0% | |
| GGAATCTGTGCTTCGTCAGT+TGG | - | 37927:2586-2605 | None:intergenic | 50.0% | |
| GGGATACTTATTGGGAGGTC+TGG | + | 37927:1912-1931 | MS.gene070160:CDS | 50.0% | |
| GGGCTGTGATTGCTATAGGA+TGG | + | 37927:4179-4198 | MS.gene070160:CDS | 50.0% | |
| TCACACCATGGGCAATCTTG+TGG | + | 37927:1458-1477 | MS.gene070160:CDS | 50.0% | |
| TCACAGGGGAGTTCAGCAAA+GGG | + | 37927:4143-4162 | MS.gene070160:intron | 50.0% | |
| TGCTCCCAAACCAAGTGATG+TGG | - | 37927:1965-1984 | None:intergenic | 50.0% | |
| ! | ATGGGGTTAGTGGACCTTTC+TGG | + | 37927:357-376 | MS.gene070160:CDS | 50.0% |
| ! | CTACTACGAGGGATTTTGGG+AGG | - | 37927:3956-3975 | None:intergenic | 50.0% |
| ! | GGACCTTTCTGGTATGCTAG+TGG | + | 37927:368-387 | MS.gene070160:CDS | 50.0% |
| ! | GTGACAATTAGGCTTGGTCC+AGG | + | 37927:3491-3510 | MS.gene070160:intron | 50.0% |
| ! | TTAGGCTTGGTCCAGGAAAG+AGG | + | 37927:3498-3517 | MS.gene070160:intron | 50.0% |
| !! | CATCAGAACTGATTTGGGGG+TGG | - | 37927:3577-3596 | None:intergenic | 50.0% |
| !! | GCTGTAGCTTTGATGGGGAA+AGG | + | 37927:2048-2067 | MS.gene070160:CDS | 50.0% |
| !! | GTAGCTTTGATGGGGAAAGG+TGG | + | 37927:2051-2070 | MS.gene070160:CDS | 50.0% |
| ACCATGCGCCTGCGCTAAAT+AGG | - | 37927:733-752 | None:intergenic | 55.0% | |
| ACCTATTTAGCGCAGGCGCA+TGG | + | 37927:729-748 | MS.gene070160:intron | 55.0% | |
| ATCAGGGCAGTGACTTCTGC+TGG | + | 37927:2776-2795 | MS.gene070160:intron | 55.0% | |
| CAGGACCACAAGATTGCCCA+TGG | - | 37927:1466-1485 | None:intergenic | 55.0% | |
| CCTATTCTTTCCCTCCCTGC+AGG | + | 37927:3409-3428 | MS.gene070160:CDS | 55.0% | |
| CCTGCAGGGAGGGAAAGAAT+AGG | - | 37927:3412-3431 | None:intergenic | 55.0% | |
| GTGGAGCTACCATCCAGGTT+AGG | + | 37927:387-406 | MS.gene070160:intron | 55.0% | |
| TGCTAGTGGAGCTACCATCC+AGG | + | 37927:382-401 | MS.gene070160:CDS | 55.0% | |
| ! | GAATGTGGCCTTGAGTCCAC+CGG | - | 37927:1021-1040 | None:intergenic | 55.0% |
| ! | GCTTGGGAGTATGGGGTTAG+TGG | + | 37927:347-366 | MS.gene070160:CDS | 55.0% |
| ! | GGGTGAGTGCTATTGCAGCA+AGG | + | 37927:1872-1891 | MS.gene070160:CDS | 55.0% |
| ! | TACACTAGCCGGTGGACTCA+AGG | + | 37927:1010-1029 | MS.gene070160:CDS | 55.0% |
| AAGTGAGGCAGGTCGTGGAC+TGG | + | 37927:2011-2030 | MS.gene070160:CDS | 60.0% | |
| GTGCTGAAGTCCCCCAACTG+AGG | - | 37927:845-864 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 37927 | gene | 308 | 4444 | 308 | ID=MS.gene070160 |
| 37927 | mRNA | 308 | 4444 | 308 | ID=MS.gene070160.t1;Parent=MS.gene070160 |
| 37927 | exon | 308 | 403 | 308 | ID=MS.gene070160.t1.exon1;Parent=MS.gene070160.t1 |
| 37927 | CDS | 308 | 403 | 308 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 521 | 603 | 521 | ID=MS.gene070160.t1.exon2;Parent=MS.gene070160.t1 |
| 37927 | CDS | 521 | 603 | 521 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 848 | 1068 | 848 | ID=MS.gene070160.t1.exon3;Parent=MS.gene070160.t1 |
| 37927 | CDS | 848 | 1068 | 848 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 1330 | 1592 | 1330 | ID=MS.gene070160.t1.exon4;Parent=MS.gene070160.t1 |
| 37927 | CDS | 1330 | 1592 | 1330 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 1865 | 2103 | 1865 | ID=MS.gene070160.t1.exon5;Parent=MS.gene070160.t1 |
| 37927 | CDS | 1865 | 2103 | 1865 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 2781 | 3430 | 2781 | ID=MS.gene070160.t1.exon6;Parent=MS.gene070160.t1 |
| 37927 | CDS | 2781 | 3430 | 2781 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| 37927 | exon | 4149 | 4444 | 4149 | ID=MS.gene070160.t1.exon7;Parent=MS.gene070160.t1 |
| 37927 | CDS | 4149 | 4444 | 4149 | ID=cds.MS.gene070160.t1;Parent=MS.gene070160.t1 |
| Gene Sequence |
| Protein sequence |
