Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070466.t1 | PNX56744.1 | 73.2 | 365 | 91 | 3 | 76 | 438 | 1 | 360 | 1.80E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070466.t1 | P08770 | 35.0 | 346 | 199 | 9 | 112 | 443 | 134 | 467 | 1.6e-47 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070466.t1 | A0A2K3JRT3 | 73.2 | 365 | 91 | 3 | 76 | 438 | 1 | 360 | 1.3e-154 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene070466 | 0.820538 | 6.50E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene070466 | 0.802143 | 6.45E-49 | -1.69E-46 |
| MS.gene055056 | MS.gene070466 | 0.813115 | 3.01E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene070466 | 0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene070466 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene058515 | MS.gene070466 | 0.840927 | 6.47E-58 | -1.69E-46 |
| MS.gene059276 | MS.gene070466 | 0.843366 | 1.46E-58 | -1.69E-46 |
| MS.gene059584 | MS.gene070466 | 0.823332 | 1.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070466.t1 | MTR_4g107900 | 81.053 | 95 | 18 | 0 | 177 | 271 | 86 | 180 | 8.68e-50 | 167 |
| MS.gene070466.t1 | MTR_4g107900 | 57.576 | 99 | 36 | 1 | 23 | 115 | 22 | 120 | 7.07e-26 | 103 |
| MS.gene070466.t1 | MTR_7g106390 | 81.053 | 95 | 18 | 0 | 177 | 271 | 86 | 180 | 9.44e-50 | 167 |
| MS.gene070466.t1 | MTR_7g106390 | 57.576 | 99 | 36 | 1 | 23 | 115 | 22 | 120 | 7.43e-26 | 103 |
| MS.gene070466.t1 | MTR_6g027800 | 82.222 | 90 | 16 | 0 | 181 | 270 | 11 | 100 | 2.44e-47 | 159 |
| MS.gene070466.t1 | MTR_5g023055 | 80.519 | 77 | 15 | 0 | 177 | 253 | 32 | 108 | 2.00e-37 | 132 |
| MS.gene070466.t1 | MTR_4g120840 | 44.706 | 85 | 47 | 0 | 211 | 295 | 22 | 106 | 3.84e-20 | 85.9 |
| MS.gene070466.t1 | MTR_5g034530 | 46.269 | 67 | 36 | 0 | 353 | 419 | 12 | 78 | 6.84e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070466.t1 | AT3G42170 | 28.035 | 346 | 223 | 9 | 116 | 443 | 65 | 402 | 2.17e-34 | 136 |
| MS.gene070466.t1 | AT3G42170 | 28.035 | 346 | 223 | 9 | 116 | 443 | 43 | 380 | 2.99e-34 | 135 |
| MS.gene070466.t1 | AT1G18560 | 23.145 | 337 | 237 | 11 | 112 | 442 | 49 | 369 | 4.59e-14 | 74.7 |
Find 82 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAAGATAACTCAAATTT+TGG | 0.133332 | 3.3:+24832702 | None:intergenic |
| CTAGATTCTCAATTCCTTCT+AGG | 0.160511 | 3.3:-24832841 | MS.gene070466:CDS |
| GGTCCTGATGCTGGAGATTC+AGG | 0.280201 | 3.3:-24833250 | MS.gene070466:CDS |
| CACATTTCATTGATCAAGAT+TGG | 0.297341 | 3.3:-24832673 | MS.gene070466:CDS |
| TGCAACACTGCCACCGAGTT+TGG | 0.303498 | 3.3:-24833362 | MS.gene070466:CDS |
| ATCCTAGAGCTACGTGTAAT+TGG | 0.309322 | 3.3:-24833159 | MS.gene070466:CDS |
| ATAGGTTTAGAACTTGCATT+AGG | 0.320588 | 3.3:-24832313 | MS.gene070466:CDS |
| GAAGGATCAAGAGACTCTTT+TGG | 0.324518 | 3.3:+24833052 | None:intergenic |
| ACTCCCCTATGATCCATAAT+TGG | 0.343800 | 3.3:+24832620 | None:intergenic |
| GAGCAAATGGATTCTTAGAT+TGG | 0.344996 | 3.3:+24833093 | None:intergenic |
| TTTGTCCAATTATGGATCAT+AGG | 0.354325 | 3.3:-24832625 | MS.gene070466:CDS |
| CACGTAGCTCTAGGATTAGT+TGG | 0.358166 | 3.3:+24833166 | None:intergenic |
| AAGCTTGTAGAACTAGATCT+TGG | 0.362157 | 3.3:-24833219 | MS.gene070466:CDS |
| TTCAGCTGCTAGAGATTGTT+GGG | 0.380500 | 3.3:-24832816 | MS.gene070466:CDS |
| AGGTTCAGCAGTAGAGTTCA+TGG | 0.387049 | 3.3:+24833393 | None:intergenic |
| GATAAGAAGAAAAGGAAAGT+TGG | 0.392292 | 3.3:-24833301 | MS.gene070466:CDS |
| GTAGAACTAGATCTTGGGTT+TGG | 0.394767 | 3.3:-24833213 | MS.gene070466:CDS |
| GCCGATTCCGTCACCCTCTT+CGG | 0.407057 | 3.3:-24834174 | MS.gene070466:CDS |
| GGTGGTACCGGTATCGGAGG+TGG | 0.409498 | 3.3:+24834200 | None:intergenic |
| TTCAACAAATGCAACTATCA+AGG | 0.437789 | 3.3:-24833272 | MS.gene070466:CDS |
| TGGAATTCACATCCACTAAA+GGG | 0.442210 | 3.3:-24832470 | MS.gene070466:CDS |
| GGTGACGGAATCGGCGGCGG+TGG | 0.442732 | 3.3:+24834182 | None:intergenic |
| TTGTCCAATTATGGATCATA+GGG | 0.444379 | 3.3:-24832624 | MS.gene070466:CDS |
| AGAGTTAGTGTTTGTTGAGA+AGG | 0.444462 | 3.3:+24833034 | None:intergenic |
| ACTATCAAGGGTCCTGATGC+TGG | 0.445577 | 3.3:-24833259 | MS.gene070466:CDS |
| TTTCAGCTGCTAGAGATTGT+TGG | 0.447071 | 3.3:-24832817 | MS.gene070466:CDS |
| CTAGAAGGAATTGAGAATCT+AGG | 0.447489 | 3.3:+24832842 | None:intergenic |
| TACATGCTTCAGTATCGAAA+TGG | 0.447494 | 3.3:+24832957 | None:intergenic |
| GGAATCGGCGGCGGTGGTAC+CGG | 0.451230 | 3.3:+24834188 | None:intergenic |
| CTCTTTCTCTCTGAATCATC+AGG | 0.452798 | 3.3:-24834117 | MS.gene070466:intron |
| AATCTCCCGGTCGCATGGAT+AGG | 0.453439 | 3.3:-24832331 | MS.gene070466:CDS |
| AGCTTGTAGAACTAGATCTT+GGG | 0.455422 | 3.3:-24833218 | MS.gene070466:CDS |
| TTAGTCTCACCACTGATTGT+TGG | 0.455686 | 3.3:-24832733 | MS.gene070466:CDS |
| CTAGCAGCTGAAATCCTAGA+AGG | 0.456104 | 3.3:+24832827 | None:intergenic |
| ACTAATGAGAGTAGAATAGC+TGG | 0.463179 | 3.3:-24833427 | MS.gene070466:CDS |
| GCCGAAGAGGGTGACGGAAT+CGG | 0.463494 | 3.3:+24834173 | None:intergenic |
| GTAAGTAATAGCAACATCAT+TGG | 0.463572 | 3.3:+24832514 | None:intergenic |
| AAAGAAGATGGGAATGGAAC+TGG | 0.465979 | 3.3:-24832998 | MS.gene070466:CDS |
| GGCGGCGGTGGTACCGGTAT+CGG | 0.470840 | 3.3:+24834194 | None:intergenic |
| GATCATAGGGGAGTAACAAT+TGG | 0.478707 | 3.3:-24832611 | MS.gene070466:CDS |
| GTACCTGAATCTCCAGCATC+AGG | 0.482272 | 3.3:+24833247 | None:intergenic |
| GTTCCAATGATAAGAAGAAA+AGG | 0.486743 | 3.3:-24833309 | MS.gene070466:CDS |
| GCGTCGCCCACCTCCGATAC+CGG | 0.487533 | 3.3:-24834207 | MS.gene070466:CDS |
| TCGTCAATCTCCCGGTCGCA+TGG | 0.499716 | 3.3:-24832336 | MS.gene070466:CDS |
| CTGGAATTCACATCCACTAA+AGG | 0.500214 | 3.3:-24832471 | MS.gene070466:CDS |
| CAGAGAGAAAGAGTCGGATC+CGG | 0.509168 | 3.3:+24834127 | None:intergenic |
| GTTGCTATTACTTACTTGAA+AGG | 0.509736 | 3.3:-24832506 | MS.gene070466:CDS |
| TAGGTTTAGAACTTGCATTA+GGG | 0.511776 | 3.3:-24832312 | MS.gene070466:CDS |
| GTGGTACCGGTATCGGAGGT+GGG | 0.511799 | 3.3:+24834201 | None:intergenic |
| GAGGGTGACGGAATCGGCGG+CGG | 0.514193 | 3.3:+24834179 | None:intergenic |
| ATGAACTCTACTGCTGAACC+TGG | 0.520819 | 3.3:-24833391 | MS.gene070466:CDS |
| GGCAGTGTTGCAAGTAGTCC+AGG | 0.524119 | 3.3:+24833373 | None:intergenic |
| GGATCCGGTGAGAGGATTGT+TGG | 0.533260 | 3.3:+24834142 | None:intergenic |
| TCTAAACCTATCCATGCGAC+CGG | 0.534074 | 3.3:+24832325 | None:intergenic |
| AACACTGCCACCGAGTTTGG+AGG | 0.543171 | 3.3:-24833359 | MS.gene070466:CDS |
| ACTAGCATTATCGACTGTAA+TGG | 0.544736 | 3.3:+24832538 | None:intergenic |
| ACACTGCCACCGAGTTTGGA+GGG | 0.556428 | 3.3:-24833358 | MS.gene070466:CDS |
| AGATATGTTCGTCAATCTCC+CGG | 0.560668 | 3.3:-24832344 | MS.gene070466:CDS |
| TCAACAAATGCAACTATCAA+GGG | 0.568353 | 3.3:-24833271 | MS.gene070466:CDS |
| AAAGAGTCGGATCCGGTGAG+AGG | 0.572184 | 3.3:+24834134 | None:intergenic |
| CACCAATTACACGTAGCTCT+AGG | 0.580322 | 3.3:+24833157 | None:intergenic |
| AGAAAAGTGTACTGTGCAGT+TGG | 0.581054 | 3.3:-24832276 | MS.gene070466:CDS |
| ATAGGGGAGTAACAATTGGT+AGG | 0.597423 | 3.3:-24832607 | MS.gene070466:CDS |
| CACTGCCACCGAGTTTGGAG+GGG | 0.599407 | 3.3:-24833357 | MS.gene070466:CDS |
| CTAAACCTATCCATGCGACC+GGG | 0.603499 | 3.3:+24832326 | None:intergenic |
| ATCACCAACAATCCTCTCAC+CGG | 0.605746 | 3.3:-24834146 | MS.gene070466:CDS |
| GGCGGTGGTACCGGTATCGG+AGG | 0.608910 | 3.3:+24834197 | None:intergenic |
| GGAATTCACATCCACTAAAG+GGG | 0.608914 | 3.3:-24832469 | MS.gene070466:CDS |
| AATGATGTGAACGTTGGTGA+AGG | 0.617934 | 3.3:-24833331 | MS.gene070466:CDS |
| ATTTCGATACTGAAGCATGT+AGG | 0.629372 | 3.3:-24832955 | MS.gene070466:CDS |
| GACAGAAGTCCAACAATCAG+TGG | 0.630331 | 3.3:+24832724 | None:intergenic |
| ATACTTGCCGAAGAGGGTGA+CGG | 0.630686 | 3.3:+24834167 | None:intergenic |
| GTTGGTGATACTTGCCGAAG+AGG | 0.646119 | 3.3:+24834160 | None:intergenic |
| TTGGTGATACTTGCCGAAGA+GGG | 0.648550 | 3.3:+24834161 | None:intergenic |
| GAAGAGGGTGACGGAATCGG+CGG | 0.650316 | 3.3:+24834176 | None:intergenic |
| CTAATGAGAGTAGAATAGCT+GGG | 0.652385 | 3.3:-24833426 | MS.gene070466:CDS |
| ATGATTCAGAGAGAAAGAGT+CGG | 0.658039 | 3.3:+24834121 | None:intergenic |
| TGCAGTTGGATGTCTCAACT+AGG | 0.666540 | 3.3:-24832262 | MS.gene070466:CDS |
| TGTCCAATTATGGATCATAG+GGG | 0.671670 | 3.3:-24832623 | MS.gene070466:CDS |
| GAATTCACATCCACTAAAGG+GGG | 0.671735 | 3.3:-24832468 | MS.gene070466:CDS |
| AGCTACGTGTAATTGGTGTG+CGG | 0.672582 | 3.3:-24833152 | MS.gene070466:CDS |
| AGTTGGATGTCTCAACTAGG+TGG | 0.748279 | 3.3:-24832259 | MS.gene070466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGTTAAAAAGTATTTTT+AGG | - | chr3.3:24833684-24833703 | MS.gene070466:intron | 10.0% |
| !!! | TTTTGTATAAAAAAAATGTT+TGG | - | chr3.3:24832890-24832909 | MS.gene070466:CDS | 10.0% |
| !! | TCAAAAAGAATATATTTGAA+AGG | - | chr3.3:24832624-24832643 | MS.gene070466:CDS | 15.0% |
| !!! | ATTATTTTTTAATTCGTATG+TGG | - | chr3.3:24832980-24832999 | MS.gene070466:CDS | 15.0% |
| !!! | CTTATATTTTTTGCATTATA+AGG | - | chr3.3:24832534-24832553 | MS.gene070466:CDS | 15.0% |
| !!! | TTCAAATATATTCTTTTTGA+TGG | + | chr3.3:24832624-24832643 | None:intergenic | 15.0% |
| !! | AAAGAATATATTTGAAAGGA+TGG | - | chr3.3:24832628-24832647 | MS.gene070466:CDS | 20.0% |
| !! | AACAATTGAAAAAAGAAGAT+GGG | - | chr3.3:24833447-24833466 | MS.gene070466:intron | 20.0% |
| !! | AAGAATATATTTGAAAGGAT+GGG | - | chr3.3:24832629-24832648 | MS.gene070466:CDS | 20.0% |
| !! | TAGATTAGAATAAATTAGCT+TGG | - | chr3.3:24832701-24832720 | MS.gene070466:CDS | 20.0% |
| !! | TAGGAAAATTGAAAAATGTT+TGG | - | chr3.3:24833868-24833887 | MS.gene070466:intron | 20.0% |
| !!! | AGATTAGAATAAATTAGCTT+GGG | - | chr3.3:24832702-24832721 | MS.gene070466:CDS | 20.0% |
| !!! | AGTTAAAAAGTATTTTTAGG+AGG | - | chr3.3:24833687-24833706 | MS.gene070466:intron | 20.0% |
| !!! | ATTTTTTGCATTATAAGGAA+AGG | - | chr3.3:24832539-24832558 | MS.gene070466:CDS | 20.0% |
| !!! | GTTAAAAAGTATTTTTAGGA+GGG | - | chr3.3:24833688-24833707 | MS.gene070466:intron | 20.0% |
| !!! | TCTTAATTTTTGTCCAATTA+TGG | - | chr3.3:24833823-24833842 | MS.gene070466:intron | 20.0% |
| !!! | TTAAAAAGTATTTTTAGGAG+GGG | - | chr3.3:24833689-24833708 | MS.gene070466:intron | 20.0% |
| !!! | TTTTTTATCACTTACTTCTT+TGG | - | chr3.3:24832857-24832876 | MS.gene070466:CDS | 20.0% |
| ! | ATCAGATAGATTAGAAACAA+TGG | - | chr3.3:24832423-24832442 | MS.gene070466:CDS | 25.0% |
| ! | CAACAATTGAAAAAAGAAGA+TGG | - | chr3.3:24833446-24833465 | MS.gene070466:intron | 25.0% |
| ! | GAAAATTGAAAAATGTTTGG+AGG | - | chr3.3:24833871-24833890 | MS.gene070466:intron | 25.0% |
| ! | TACTTACTTGAAAGGAAAAA+TGG | - | chr3.3:24833958-24833977 | MS.gene070466:intron | 25.0% |
| ! | TCAGATAGATTAGAAACAAT+GGG | - | chr3.3:24832424-24832443 | MS.gene070466:CDS | 25.0% |
| ! | TTCAAACATGCATTCTTATA+TGG | + | chr3.3:24832943-24832962 | None:intergenic | 25.0% |
| ! | TTTCATTCAACTATTGATCA+TGG | + | chr3.3:24832774-24832793 | None:intergenic | 25.0% |
| !! | GACAAAGATAACTCAAATTT+TGG | + | chr3.3:24833757-24833776 | None:intergenic | 25.0% |
| !! | TAATTTTGCTAATTGAAGAC+TGG | + | chr3.3:24834081-24834100 | None:intergenic | 25.0% |
| !! | TTTCCTTTTCTTCTTATCAT+TGG | + | chr3.3:24833153-24833172 | None:intergenic | 25.0% |
| !!! | TTACCTTTTAAGTTTGTTGA+GGG | - | chr3.3:24833557-24833576 | MS.gene070466:intron | 25.0% |
| !!! | TTGAATTTTGTTGTCAAAGA+CGG | - | chr3.3:24834043-24834062 | MS.gene070466:intron | 25.0% |
| CACATTTCATTGATCAAGAT+TGG | - | chr3.3:24833783-24833802 | MS.gene070466:intron | 30.0% | |
| GATAAGAAGAAAAGGAAAGT+TGG | - | chr3.3:24833155-24833174 | MS.gene070466:CDS | 30.0% | |
| GTAAGTAATAGCAACATCAT+TGG | + | chr3.3:24833945-24833964 | None:intergenic | 30.0% | |
| GTTCCAATGATAAGAAGAAA+AGG | - | chr3.3:24833147-24833166 | MS.gene070466:CDS | 30.0% | |
| TCAACAAATGCAACTATCAA+GGG | - | chr3.3:24833185-24833204 | MS.gene070466:CDS | 30.0% | |
| TGTGAAAATCCATGATCAAA+GGG | - | chr3.3:24832462-24832481 | MS.gene070466:CDS | 30.0% | |
| TTACTTGAAAGGAAAAATGG+AGG | - | chr3.3:24833961-24833980 | MS.gene070466:intron | 30.0% | |
| TTCAACAAATGCAACTATCA+AGG | - | chr3.3:24833184-24833203 | MS.gene070466:CDS | 30.0% | |
| TTGAAAAAAGAAGATGGGAA+TGG | - | chr3.3:24833452-24833471 | MS.gene070466:intron | 30.0% | |
| TTGTCCAATTATGGATCATA+GGG | - | chr3.3:24833832-24833851 | MS.gene070466:intron | 30.0% | |
| TTGTGAAAATCCATGATCAA+AGG | - | chr3.3:24832461-24832480 | MS.gene070466:CDS | 30.0% | |
| TTTGTCCAATTATGGATCAT+AGG | - | chr3.3:24833831-24833850 | MS.gene070466:intron | 30.0% | |
| ! | ATAGGTTTAGAACTTGCATT+AGG | - | chr3.3:24834143-24834162 | MS.gene070466:CDS | 30.0% |
| ! | GTTGCTATTACTTACTTGAA+AGG | - | chr3.3:24833950-24833969 | MS.gene070466:intron | 30.0% |
| ! | TAGGTTTAGAACTTGCATTA+GGG | - | chr3.3:24834144-24834163 | MS.gene070466:CDS | 30.0% |
| !! | TTTTACATTGACTGAGCAAA+TGG | + | chr3.3:24833379-24833398 | None:intergenic | 30.0% |
| !!! | GTTACCTTTTAAGTTTGTTG+AGG | - | chr3.3:24833556-24833575 | MS.gene070466:intron | 30.0% |
| !!! | TACCTTTTAAGTTTGTTGAG+GGG | - | chr3.3:24833558-24833577 | MS.gene070466:intron | 30.0% |
| AAGCTTGTAGAACTAGATCT+TGG | - | chr3.3:24833237-24833256 | MS.gene070466:CDS | 35.0% | |
| ACTAATGAGAGTAGAATAGC+TGG | - | chr3.3:24833029-24833048 | MS.gene070466:CDS | 35.0% | |
| AGCTTGTAGAACTAGATCTT+GGG | - | chr3.3:24833238-24833257 | MS.gene070466:CDS | 35.0% | |
| ATGATTCAGAGAGAAAGAGT+CGG | + | chr3.3:24832338-24832357 | None:intergenic | 35.0% | |
| ATTTCGATACTGAAGCATGT+AGG | - | chr3.3:24833501-24833520 | MS.gene070466:intron | 35.0% | |
| CTAATGAGAGTAGAATAGCT+GGG | - | chr3.3:24833030-24833049 | MS.gene070466:CDS | 35.0% | |
| CTAGAAGGAATTGAGAATCT+AGG | + | chr3.3:24833617-24833636 | None:intergenic | 35.0% | |
| CTAGATTCTCAATTCCTTCT+AGG | - | chr3.3:24833615-24833634 | MS.gene070466:intron | 35.0% | |
| TGATTCAGCTATTGAAGAGA+AGG | + | chr3.3:24832407-24832426 | None:intergenic | 35.0% | |
| TGGAATTCACATCCACTAAA+GGG | - | chr3.3:24833986-24834005 | MS.gene070466:intron | 35.0% | |
| TGTCCAATTATGGATCATAG+GGG | - | chr3.3:24833833-24833852 | MS.gene070466:intron | 35.0% | |
| TTGAAAAATGTTTGGAGGAG+TGG | - | chr3.3:24833876-24833895 | MS.gene070466:intron | 35.0% | |
| ! | ACTAGCATTATCGACTGTAA+TGG | + | chr3.3:24833921-24833940 | None:intergenic | 35.0% |
| ! | AGAGTTAGTGTTTGTTGAGA+AGG | + | chr3.3:24833425-24833444 | None:intergenic | 35.0% |
| ! | GAGCAAATGGATTCTTAGAT+TGG | + | chr3.3:24833366-24833385 | None:intergenic | 35.0% |
| ! | TACATGCTTCAGTATCGAAA+TGG | + | chr3.3:24833502-24833521 | None:intergenic | 35.0% |
| !! | GCTGCTGATTCACATAAAAA+TGG | - | chr3.3:24833335-24833354 | MS.gene070466:CDS | 35.0% |
| !!! | ACCTTTTAAGTTTGTTGAGG+GGG | - | chr3.3:24833559-24833578 | MS.gene070466:intron | 35.0% |
| AAAGAAGATGGGAATGGAAC+TGG | - | chr3.3:24833458-24833477 | MS.gene070466:intron | 40.0% | |
| ACTCCCCTATGATCCATAAT+TGG | + | chr3.3:24833839-24833858 | None:intergenic | 40.0% | |
| AGATATGTTCGTCAATCTCC+CGG | - | chr3.3:24834112-24834131 | MS.gene070466:intron | 40.0% | |
| ATAGGGGAGTAACAATTGGT+AGG | - | chr3.3:24833849-24833868 | MS.gene070466:intron | 40.0% | |
| ATCCTAGAGCTACGTGTAAT+TGG | - | chr3.3:24833297-24833316 | MS.gene070466:CDS | 40.0% | |
| CTCTTTCTCTCTGAATCATC+AGG | - | chr3.3:24832339-24832358 | MS.gene070466:CDS | 40.0% | |
| CTGGAATTCACATCCACTAA+AGG | - | chr3.3:24833985-24834004 | MS.gene070466:intron | 40.0% | |
| GAATTCACATCCACTAAAGG+GGG | - | chr3.3:24833988-24834007 | MS.gene070466:intron | 40.0% | |
| GATCATAGGGGAGTAACAAT+TGG | - | chr3.3:24833845-24833864 | MS.gene070466:intron | 40.0% | |
| GGAATTCACATCCACTAAAG+GGG | - | chr3.3:24833987-24834006 | MS.gene070466:intron | 40.0% | |
| GGGAAAAATGATGTGAACGT+TGG | - | chr3.3:24833119-24833138 | MS.gene070466:CDS | 40.0% | |
| GGGCGCTATTCATGTAATTT+GGG | - | chr3.3:24832482-24832501 | MS.gene070466:CDS | 40.0% | |
| GTAGAACTAGATCTTGGGTT+TGG | - | chr3.3:24833243-24833262 | MS.gene070466:CDS | 40.0% | |
| TCCCCCTCAACAAACTTAAA+AGG | + | chr3.3:24833563-24833582 | None:intergenic | 40.0% | |
| TGAAAGGAAAAATGGAGGAC+TGG | - | chr3.3:24833966-24833985 | MS.gene070466:intron | 40.0% | |
| TGTAAGTATTCCCCCTTTAG+TGG | + | chr3.3:24834001-24834020 | None:intergenic | 40.0% | |
| TTCAGCTGCTAGAGATTGTT+GGG | - | chr3.3:24833640-24833659 | MS.gene070466:intron | 40.0% | |
| TTTCAGCTGCTAGAGATTGT+TGG | - | chr3.3:24833639-24833658 | MS.gene070466:intron | 40.0% | |
| ! | AATGATGTGAACGTTGGTGA+AGG | - | chr3.3:24833125-24833144 | MS.gene070466:CDS | 40.0% |
| ! | AGAAAAGTGTACTGTGCAGT+TGG | - | chr3.3:24834180-24834199 | MS.gene070466:CDS | 40.0% |
| ! | AGGGCGCTATTCATGTAATT+TGG | - | chr3.3:24832481-24832500 | MS.gene070466:CDS | 40.0% |
| ! | GAAGGATCAAGAGACTCTTT+TGG | + | chr3.3:24833407-24833426 | None:intergenic | 40.0% |
| ! | TTAGTCTCACCACTGATTGT+TGG | - | chr3.3:24833723-24833742 | MS.gene070466:intron | 40.0% |
| !! | GAAGGAAAAGAGTATCAGAG+TGG | + | chr3.3:24832389-24832408 | None:intergenic | 40.0% |
| !! | TCATTTTTCCCCTCCAAACT+CGG | + | chr3.3:24833110-24833129 | None:intergenic | 40.0% |
| !! | TTTAAGTTTGTTGAGGGGGA+GGG | - | chr3.3:24833563-24833582 | MS.gene070466:intron | 40.0% |
| !!! | TTTTAAGTTTGTTGAGGGGG+AGG | - | chr3.3:24833562-24833581 | MS.gene070466:intron | 40.0% |
| AGCTACGTGTAATTGGTGTG+CGG | - | chr3.3:24833304-24833323 | MS.gene070466:CDS | 45.0% | |
| AGCTAGCTACCAAACTCTAC+AGG | + | chr3.3:24832572-24832591 | None:intergenic | 45.0% | |
| AGGGGGAATACTTACATGTC+AGG | - | chr3.3:24834005-24834024 | MS.gene070466:intron | 45.0% | |
| AGGTTCAGCAGTAGAGTTCA+TGG | + | chr3.3:24833066-24833085 | None:intergenic | 45.0% | |
| AGTTGGATGTCTCAACTAGG+TGG | - | chr3.3:24834197-24834216 | MS.gene070466:CDS | 45.0% | |
| ATCACCAACAATCCTCTCAC+CGG | - | chr3.3:24832310-24832329 | MS.gene070466:CDS | 45.0% | |
| ATGAACTCTACTGCTGAACC+TGG | - | chr3.3:24833065-24833084 | MS.gene070466:CDS | 45.0% | |
| CACCAATTACACGTAGCTCT+AGG | + | chr3.3:24833302-24833321 | None:intergenic | 45.0% | |
| CTAGCAGCTGAAATCCTAGA+AGG | + | chr3.3:24833632-24833651 | None:intergenic | 45.0% | |
| GACAGAAGTCCAACAATCAG+TGG | + | chr3.3:24833735-24833754 | None:intergenic | 45.0% | |
| GCTAGCTACCAAACTCTACA+GGG | + | chr3.3:24832571-24832590 | None:intergenic | 45.0% | |
| TCTAAACCTATCCATGCGAC+CGG | + | chr3.3:24834134-24834153 | None:intergenic | 45.0% | |
| TGAATAGCGCCCTTTGATCA+TGG | + | chr3.3:24832474-24832493 | None:intergenic | 45.0% | |
| TGCAGTTGGATGTCTCAACT+AGG | - | chr3.3:24834194-24834213 | MS.gene070466:CDS | 45.0% | |
| TTCGTATGTGGATGTTCTGC+AGG | - | chr3.3:24832992-24833011 | MS.gene070466:CDS | 45.0% | |
| ! | TTGGTGATACTTGCCGAAGA+GGG | + | chr3.3:24832298-24832317 | None:intergenic | 45.0% |
| !! | CACGTAGCTCTAGGATTAGT+TGG | + | chr3.3:24833293-24833312 | None:intergenic | 45.0% |
| !! | TTAAGTTTGTTGAGGGGGAG+GGG | - | chr3.3:24833564-24833583 | MS.gene070466:intron | 45.0% |
| ACTATCAAGGGTCCTGATGC+TGG | - | chr3.3:24833197-24833216 | MS.gene070466:CDS | 50.0% | |
| ATACTTGCCGAAGAGGGTGA+CGG | + | chr3.3:24832292-24832311 | None:intergenic | 50.0% | |
| CAGAGAGAAAGAGTCGGATC+CGG | + | chr3.3:24832332-24832351 | None:intergenic | 50.0% | |
| CTAAACCTATCCATGCGACC+GGG | + | chr3.3:24834133-24834152 | None:intergenic | 50.0% | |
| GTACCTGAATCTCCAGCATC+AGG | + | chr3.3:24833212-24833231 | None:intergenic | 50.0% | |
| ! | TTTTTCCCCTCCAAACTCGG+TGG | + | chr3.3:24833107-24833126 | None:intergenic | 50.0% |
| !! | GTTGGTGATACTTGCCGAAG+AGG | + | chr3.3:24832299-24832318 | None:intergenic | 50.0% |
| AAAGAGTCGGATCCGGTGAG+AGG | + | chr3.3:24832325-24832344 | None:intergenic | 55.0% | |
| AACACTGCCACCGAGTTTGG+AGG | - | chr3.3:24833097-24833116 | MS.gene070466:CDS | 55.0% | |
| AATCTCCCGGTCGCATGGAT+AGG | - | chr3.3:24834125-24834144 | MS.gene070466:CDS | 55.0% | |
| ACACTGCCACCGAGTTTGGA+GGG | - | chr3.3:24833098-24833117 | MS.gene070466:CDS | 55.0% | |
| GGATCCGGTGAGAGGATTGT+TGG | + | chr3.3:24832317-24832336 | None:intergenic | 55.0% | |
| GGATGCGTCCCTGTAGAGTT+TGG | - | chr3.3:24832560-24832579 | MS.gene070466:CDS | 55.0% | |
| GGCAGTGTTGCAAGTAGTCC+AGG | + | chr3.3:24833086-24833105 | None:intergenic | 55.0% | |
| GGTCCTGATGCTGGAGATTC+AGG | - | chr3.3:24833206-24833225 | MS.gene070466:CDS | 55.0% | |
| TGCAACACTGCCACCGAGTT+TGG | - | chr3.3:24833094-24833113 | MS.gene070466:CDS | 55.0% | |
| CACTGCCACCGAGTTTGGAG+GGG | - | chr3.3:24833099-24833118 | MS.gene070466:CDS | 60.0% | |
| TCGTCAATCTCCCGGTCGCA+TGG | - | chr3.3:24834120-24834139 | MS.gene070466:CDS | 60.0% | |
| ! | GCCGATTCCGTCACCCTCTT+CGG | - | chr3.3:24832282-24832301 | MS.gene070466:CDS | 60.0% |
| !! | GAAGAGGGTGACGGAATCGG+CGG | + | chr3.3:24832283-24832302 | None:intergenic | 60.0% |
| !! | GCCGAAGAGGGTGACGGAAT+CGG | + | chr3.3:24832286-24832305 | None:intergenic | 60.0% |
| !! | GTGGTACCGGTATCGGAGGT+GGG | + | chr3.3:24832258-24832277 | None:intergenic | 60.0% |
| !! | GGTGGTACCGGTATCGGAGG+TGG | + | chr3.3:24832259-24832278 | None:intergenic | 65.0% |
| GCGTCGCCCACCTCCGATAC+CGG | - | chr3.3:24832249-24832268 | MS.gene070466:CDS | 70.0% | |
| GGAATCGGCGGCGGTGGTAC+CGG | + | chr3.3:24832271-24832290 | None:intergenic | 70.0% | |
| !! | GAGGGTGACGGAATCGGCGG+CGG | + | chr3.3:24832280-24832299 | None:intergenic | 70.0% |
| !! | GGCGGCGGTGGTACCGGTAT+CGG | + | chr3.3:24832265-24832284 | None:intergenic | 70.0% |
| !! | GGCGGTGGTACCGGTATCGG+AGG | + | chr3.3:24832262-24832281 | None:intergenic | 70.0% |
| !! | GGTGACGGAATCGGCGGCGG+TGG | + | chr3.3:24832277-24832296 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 24832247 | 24834231 | 24832247 | ID=MS.gene070466 |
| chr3.3 | mRNA | 24832247 | 24834231 | 24832247 | ID=MS.gene070466.t1;Parent=MS.gene070466 |
| chr3.3 | exon | 24834118 | 24834231 | 24834118 | ID=MS.gene070466.t1.exon1;Parent=MS.gene070466.t1 |
| chr3.3 | CDS | 24834118 | 24834231 | 24834118 | ID=cds.MS.gene070466.t1;Parent=MS.gene070466.t1 |
| chr3.3 | exon | 24832247 | 24833464 | 24832247 | ID=MS.gene070466.t1.exon2;Parent=MS.gene070466.t1 |
| chr3.3 | CDS | 24832247 | 24833464 | 24832247 | ID=cds.MS.gene070466.t1;Parent=MS.gene070466.t1 |
| Gene Sequence |
| Protein sequence |
