Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071075.t1 | XP_003614194.2 | 98.4 | 251 | 4 | 0 | 1 | 251 | 1 | 251 | 4.10E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071075.t1 | Q9AR07 | 44.9 | 263 | 133 | 3 | 1 | 251 | 1 | 263 | 1.3e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071075.t1 | G7JWX2 | 98.4 | 251 | 4 | 0 | 1 | 251 | 61 | 311 | 2.9e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050646 | MS.gene071075 | 0.817907 | 2.59E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene071075 | 0.800091 | 1.70E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene071075 | 0.808759 | 2.64E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene071075 | 0.814459 | 1.52E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene071075 | 0.82929 | 5.59E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene071075 | 0.813251 | 2.81E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene071075 | 0.810014 | 1.42E-50 | -1.69E-46 |
| MS.gene057034 | MS.gene071075 | 0.81696 | 4.22E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene071075 | 0.823985 | 1.03E-53 | -1.69E-46 |
| MS.gene060244 | MS.gene071075 | 0.805914 | 1.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071075.t1 | MTR_5g046110 | 98.406 | 251 | 4 | 0 | 1 | 251 | 61 | 311 | 0.0 | 517 |
| MS.gene071075.t1 | MTR_3g117060 | 51.339 | 224 | 109 | 0 | 1 | 224 | 1 | 224 | 1.14e-78 | 241 |
| MS.gene071075.t1 | MTR_5g020940 | 47.200 | 250 | 125 | 2 | 1 | 249 | 11 | 254 | 1.96e-78 | 241 |
| MS.gene071075.t1 | MTR_8g077040 | 44.622 | 251 | 133 | 1 | 1 | 251 | 1 | 245 | 1.34e-77 | 239 |
| MS.gene071075.t1 | MTR_8g076900 | 46.988 | 249 | 126 | 1 | 1 | 249 | 1 | 243 | 1.14e-75 | 230 |
| MS.gene071075.t1 | MTR_8g076900 | 46.988 | 249 | 126 | 1 | 1 | 249 | 1 | 243 | 1.28e-74 | 231 |
| MS.gene071075.t1 | MTR_8g020700 | 47.200 | 250 | 125 | 2 | 1 | 249 | 1 | 244 | 1.84e-74 | 227 |
| MS.gene071075.t1 | MTR_8g020690 | 47.036 | 253 | 125 | 4 | 1 | 251 | 1 | 246 | 1.27e-73 | 228 |
| MS.gene071075.t1 | MTR_6g056070 | 44.444 | 252 | 133 | 2 | 1 | 251 | 1 | 246 | 1.45e-73 | 228 |
| MS.gene071075.t1 | MTR_8g020700 | 47.200 | 250 | 125 | 2 | 1 | 249 | 1 | 244 | 2.57e-73 | 228 |
| MS.gene071075.t1 | MTR_4g018820 | 43.426 | 251 | 136 | 2 | 1 | 251 | 1 | 245 | 2.53e-72 | 225 |
| MS.gene071075.t1 | MTR_3g467270 | 43.028 | 251 | 136 | 2 | 1 | 251 | 1 | 244 | 7.38e-70 | 219 |
| MS.gene071075.t1 | MTR_3g467560 | 47.619 | 231 | 119 | 2 | 1 | 230 | 25 | 254 | 1.11e-67 | 214 |
| MS.gene071075.t1 | MTR_7g084620 | 48.918 | 231 | 105 | 5 | 1 | 225 | 1 | 224 | 6.47e-63 | 201 |
| MS.gene071075.t1 | MTR_1g022455 | 46.743 | 261 | 125 | 5 | 1 | 249 | 1 | 259 | 1.31e-62 | 201 |
| MS.gene071075.t1 | MTR_1g022465 | 44.788 | 259 | 133 | 3 | 1 | 249 | 1 | 259 | 1.04e-61 | 198 |
| MS.gene071075.t1 | MTR_7g084350 | 45.778 | 225 | 118 | 3 | 3 | 225 | 1 | 223 | 1.76e-60 | 195 |
| MS.gene071075.t1 | MTR_8g077030 | 41.778 | 225 | 103 | 2 | 1 | 225 | 1 | 197 | 1.10e-51 | 176 |
| MS.gene071075.t1 | MTR_3g054330 | 36.820 | 239 | 146 | 2 | 1 | 235 | 10 | 247 | 2.11e-48 | 164 |
| MS.gene071075.t1 | MTR_5g093900 | 35.484 | 248 | 143 | 4 | 1 | 235 | 13 | 256 | 7.77e-48 | 163 |
| MS.gene071075.t1 | MTR_3g052700 | 35.366 | 246 | 144 | 4 | 1 | 235 | 13 | 254 | 1.48e-47 | 162 |
| MS.gene071075.t1 | MTR_1g108660 | 44.706 | 170 | 81 | 2 | 50 | 219 | 38 | 194 | 8.06e-41 | 143 |
| MS.gene071075.t1 | MTR_7g084330 | 43.931 | 173 | 77 | 4 | 54 | 225 | 39 | 192 | 1.28e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071075.t1 | AT4G36470 | 63.241 | 253 | 90 | 2 | 2 | 251 | 5 | 257 | 1.65e-118 | 343 |
| MS.gene071075.t1 | AT5G38020 | 44.130 | 247 | 128 | 3 | 6 | 251 | 3 | 240 | 1.03e-62 | 201 |
| MS.gene071075.t1 | AT1G19640 | 44.487 | 263 | 134 | 3 | 1 | 251 | 1 | 263 | 8.76e-61 | 196 |
| MS.gene071075.t1 | AT3G11480 | 43.725 | 247 | 128 | 4 | 5 | 249 | 27 | 264 | 3.26e-60 | 194 |
| MS.gene071075.t1 | AT5G66430 | 43.265 | 245 | 122 | 5 | 9 | 249 | 1 | 232 | 2.78e-58 | 189 |
| MS.gene071075.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 41 | 275 | 4.96e-57 | 187 |
| MS.gene071075.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 46 | 280 | 6.56e-57 | 187 |
| MS.gene071075.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 60 | 294 | 7.79e-57 | 187 |
| MS.gene071075.t1 | AT3G21950 | 39.676 | 247 | 139 | 3 | 6 | 251 | 3 | 240 | 1.24e-54 | 180 |
| MS.gene071075.t1 | AT3G21950 | 39.676 | 247 | 139 | 3 | 6 | 251 | 3 | 240 | 3.94e-54 | 179 |
| MS.gene071075.t1 | AT2G14060 | 43.119 | 218 | 114 | 3 | 9 | 225 | 14 | 222 | 7.13e-53 | 172 |
| MS.gene071075.t1 | AT2G14060 | 43.119 | 218 | 114 | 3 | 9 | 225 | 14 | 222 | 1.11e-51 | 172 |
| MS.gene071075.t1 | AT5G55250 | 39.095 | 243 | 136 | 4 | 1 | 235 | 13 | 251 | 2.77e-51 | 172 |
| MS.gene071075.t1 | AT5G04380 | 41.975 | 243 | 128 | 5 | 9 | 249 | 34 | 265 | 5.82e-51 | 171 |
| MS.gene071075.t1 | AT5G04380 | 41.975 | 243 | 128 | 5 | 9 | 249 | 38 | 269 | 8.34e-51 | 171 |
| MS.gene071075.t1 | AT5G38020 | 44.828 | 203 | 103 | 2 | 49 | 251 | 8 | 201 | 1.82e-50 | 168 |
| MS.gene071075.t1 | AT1G68040 | 38.938 | 226 | 120 | 5 | 3 | 223 | 7 | 219 | 1.17e-47 | 162 |
| MS.gene071075.t1 | AT5G04380 | 44.554 | 202 | 100 | 4 | 49 | 249 | 8 | 198 | 5.72e-46 | 156 |
| MS.gene071075.t1 | AT5G38780 | 37.339 | 233 | 124 | 5 | 7 | 230 | 8 | 227 | 2.71e-44 | 153 |
| MS.gene071075.t1 | AT5G37970 | 40.179 | 224 | 113 | 6 | 7 | 220 | 8 | 220 | 5.94e-44 | 152 |
| MS.gene071075.t1 | AT5G55250 | 39.524 | 210 | 115 | 4 | 34 | 235 | 8 | 213 | 4.10e-43 | 149 |
| MS.gene071075.t1 | AT5G56300 | 37.387 | 222 | 130 | 3 | 5 | 224 | 20 | 234 | 1.16e-42 | 149 |
| MS.gene071075.t1 | AT5G37990 | 37.449 | 243 | 127 | 7 | 7 | 239 | 8 | 235 | 8.19e-42 | 146 |
| MS.gene071075.t1 | AT5G38100 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 8.81e-42 | 143 |
| MS.gene071075.t1 | AT5G38100 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 1.02e-41 | 143 |
| MS.gene071075.t1 | AT5G38100 | 37.288 | 236 | 120 | 8 | 6 | 230 | 7 | 225 | 1.47e-40 | 143 |
| MS.gene071075.t1 | AT1G15125 | 37.443 | 219 | 120 | 4 | 9 | 223 | 1 | 206 | 1.57e-40 | 140 |
| MS.gene071075.t1 | AT1G15125 | 37.443 | 219 | 120 | 4 | 9 | 223 | 1 | 206 | 2.92e-39 | 139 |
| MS.gene071075.t1 | AT4G26420 | 36.283 | 226 | 132 | 5 | 3 | 224 | 7 | 224 | 1.33e-38 | 135 |
| MS.gene071075.t1 | AT5G38780 | 39.560 | 182 | 92 | 4 | 54 | 230 | 10 | 178 | 8.99e-38 | 134 |
| MS.gene071075.t1 | AT5G38100 | 37.619 | 210 | 107 | 7 | 28 | 230 | 10 | 202 | 1.46e-37 | 134 |
| MS.gene071075.t1 | AT4G26420 | 36.364 | 220 | 128 | 5 | 9 | 224 | 1 | 212 | 3.18e-37 | 132 |
| MS.gene071075.t1 | AT4G26420 | 36.283 | 226 | 132 | 5 | 3 | 224 | 7 | 224 | 3.52e-37 | 134 |
| MS.gene071075.t1 | AT3G44840 | 37.118 | 229 | 120 | 7 | 7 | 230 | 5 | 214 | 4.89e-35 | 128 |
| MS.gene071075.t1 | AT3G44870 | 35.266 | 207 | 117 | 4 | 7 | 212 | 5 | 195 | 5.10e-33 | 124 |
| MS.gene071075.t1 | AT3G44860 | 36.538 | 208 | 116 | 4 | 7 | 212 | 5 | 198 | 3.58e-32 | 120 |
| MS.gene071075.t1 | AT1G66700 | 31.019 | 216 | 130 | 4 | 9 | 219 | 9 | 210 | 5.94e-29 | 110 |
| MS.gene071075.t1 | AT1G66700 | 31.019 | 216 | 130 | 4 | 9 | 219 | 9 | 210 | 2.91e-28 | 110 |
| MS.gene071075.t1 | AT1G66720 | 30.769 | 221 | 124 | 6 | 9 | 219 | 9 | 210 | 1.83e-25 | 103 |
| MS.gene071075.t1 | AT1G66690 | 29.952 | 207 | 126 | 4 | 9 | 210 | 9 | 201 | 1.60e-24 | 100 |
Find 49 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTCAATTCTATCTTTA+AGG | 0.090377 | 5.1:+34125425 | MS.gene071075:CDS |
| ACAAAGTGCAAGTAACTATT+AGG | 0.200532 | 5.1:-34125549 | None:intergenic |
| TTGATGATTGATAGAGTATT+TGG | 0.223902 | 5.1:-34125312 | None:intergenic |
| TATCTTGATTAAGCAACTTT+TGG | 0.236852 | 5.1:-34125461 | None:intergenic |
| AGCCTACTCTAAGCAGTTTC+AGG | 0.250766 | 5.1:+34126259 | MS.gene071075:CDS |
| AAAATGGTGCTTACATTTCT+AGG | 0.257688 | 5.1:+34126335 | MS.gene071075:CDS |
| GAGTATAGGCATTGCTGATT+TGG | 0.281462 | 5.1:+34125275 | MS.gene071075:CDS |
| ACAGAGGCAACTCTTTCTTC+TGG | 0.290156 | 5.1:+34126381 | MS.gene071075:CDS |
| TTCTGTTCATCATAGATTGC+AGG | 0.310451 | 5.1:-34126176 | None:intergenic |
| CAGAGGCAACTCTTTCTTCT+GGG | 0.360572 | 5.1:+34126382 | MS.gene071075:CDS |
| AGTATAGGCATTGCTGATTT+GGG | 0.367599 | 5.1:+34125276 | MS.gene071075:CDS |
| TTGAAAGCCAGTGTAAACTA+TGG | 0.371002 | 5.1:-34125581 | None:intergenic |
| GCTGATTTGGGATGTTCATC+TGG | 0.374942 | 5.1:+34125288 | MS.gene071075:CDS |
| TCAGCAATGCCTATACTCTT+TGG | 0.382092 | 5.1:-34125270 | None:intergenic |
| TAGGCTTGAGAAACCACTTC+AGG | 0.390573 | 5.1:-34126242 | None:intergenic |
| TTGCCTCTGTCAACATGTTC+AGG | 0.395884 | 5.1:-34126368 | None:intergenic |
| ATAGAATTGAAGTCATTAGT+TGG | 0.400155 | 5.1:-34125417 | None:intergenic |
| AAAAGTTGCTTAATCAAGAT+AGG | 0.400547 | 5.1:+34125463 | MS.gene071075:CDS |
| ATAGTTTACACTGGCTTTCA+AGG | 0.405651 | 5.1:+34125583 | MS.gene071075:CDS |
| TTTCCTTGTTCCTTCGATCA+AGG | 0.407489 | 5.1:+34126288 | MS.gene071075:CDS |
| GAGAAAGTGTTTCATATGAC+TGG | 0.444815 | 5.1:+34124935 | MS.gene071075:CDS |
| CTTATGACTTGTTAATTGAA+TGG | 0.447928 | 5.1:-34125349 | None:intergenic |
| CAAAGTGCAAGTAACTATTA+GGG | 0.459256 | 5.1:-34125548 | None:intergenic |
| TCTGAAGAATTAGTTGTTGG+TGG | 0.473474 | 5.1:+34126311 | MS.gene071075:CDS |
| GAAACAACACCAAAGAGTAT+AGG | 0.498471 | 5.1:+34125261 | MS.gene071075:CDS |
| TTTCATATGACTGGAGGAGT+TGG | 0.517310 | 5.1:+34124944 | MS.gene071075:CDS |
| AGGTCTGAAGAATTAGTTGT+TGG | 0.520501 | 5.1:+34126308 | MS.gene071075:CDS |
| CAATCTATGATGAACAGAAA+AGG | 0.521627 | 5.1:+34126180 | MS.gene071075:CDS |
| CTTTACTATTCTAGTCTCAC+AGG | 0.527990 | 5.1:+34126421 | MS.gene071075:CDS |
| ACAGAAAAGGTCTTTGAACA+AGG | 0.529384 | 5.1:+34126193 | MS.gene071075:CDS |
| ATTCCTCCCATAGTTTACAC+TGG | 0.536094 | 5.1:+34125574 | MS.gene071075:CDS |
| AGGCTTGAGAAACCACTTCA+GGG | 0.555639 | 5.1:-34126241 | None:intergenic |
| CTTACATTTCTAGGAAGAAG+AGG | 0.558020 | 5.1:+34126344 | MS.gene071075:CDS |
| CTGTGAGACTAGAATAGTAA+AGG | 0.565747 | 5.1:-34126420 | None:intergenic |
| TAGTTTACACTGGCTTTCAA+GGG | 0.566931 | 5.1:+34125584 | MS.gene071075:CDS |
| ATGTGATAAAAGCCCTGAAG+TGG | 0.573917 | 5.1:+34126229 | MS.gene071075:CDS |
| TGAAAGCCAGTGTAAACTAT+GGG | 0.578907 | 5.1:-34125580 | None:intergenic |
| AGTCTTCCATAAAATGAACC+AGG | 0.581914 | 5.1:-34125522 | None:intergenic |
| AGGAGAATGAACCTGTAATG+AGG | 0.588359 | 5.1:-34124990 | None:intergenic |
| AGACCTTGATCGAAGGAACA+AGG | 0.605492 | 5.1:-34126291 | None:intergenic |
| TGTTCATCATAGATTGCAGG+AGG | 0.605716 | 5.1:-34126173 | None:intergenic |
| CAGAAAAGGTCTTTGAACAA+GGG | 0.606248 | 5.1:+34126194 | MS.gene071075:CDS |
| AGACTCTAAATTCAGTAGAG+TGG | 0.607770 | 5.1:-34125380 | None:intergenic |
| TTCCTGAAACTGCTTAGAGT+AGG | 0.616433 | 5.1:-34126261 | None:intergenic |
| ATTCTTCAGACCTTGATCGA+AGG | 0.628016 | 5.1:-34126298 | None:intergenic |
| AAAGTGTTTCATATGACTGG+AGG | 0.635621 | 5.1:+34124938 | MS.gene071075:CDS |
| AAGCCAGTGTAAACTATGGG+AGG | 0.640625 | 5.1:-34125577 | None:intergenic |
| GTCTTCCATAAAATGAACCA+GGG | 0.674623 | 5.1:-34125521 | None:intergenic |
| GGACCTGAACATGTTGACAG+AGG | 0.711511 | 5.1:+34126365 | MS.gene071075:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATAAATATTATGAA+TGG | - | chr5.1:34125168-34125187 | None:intergenic | 10.0% |
| !! | ATTTAAATAAATGTTATGAA+TGG | - | chr5.1:34125083-34125102 | None:intergenic | 10.0% |
| !!! | AAATGTTATCTTTACTATTT+TGG | + | chr5.1:34126460-34126479 | MS.gene071075:intron | 15.0% |
| !!! | CAAAATTTTAAGGTAAAATA+AGG | - | chr5.1:34125049-34125068 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATACATTTA+GGG | + | chr5.1:34125764-34125783 | MS.gene071075:intron | 15.0% |
| !!! | TTGTATTTTGTTAGTTAATT+TGG | + | chr5.1:34125699-34125718 | MS.gene071075:intron | 15.0% |
| !!! | TTTGTAATTTTGATACATTT+AGG | + | chr5.1:34125763-34125782 | MS.gene071075:intron | 15.0% |
| !! | AAAAAGAAGTAATGAAAAGA+AGG | - | chr5.1:34125621-34125640 | None:intergenic | 20.0% |
| !! | AAAACAAATGCATTCTATAT+AGG | + | chr5.1:34126545-34126564 | MS.gene071075:intron | 20.0% |
| !! | AAAGATAACATTTGTGTTAA+AGG | - | chr5.1:34126453-34126472 | None:intergenic | 20.0% |
| !! | AGATATTGAAGAATAATTGA+AGG | - | chr5.1:34125013-34125032 | None:intergenic | 20.0% |
| !! | ATTTATGAAAAACATATCTG+AGG | - | chr5.1:34125671-34125690 | None:intergenic | 20.0% |
| !! | TTAATCAAGATAGGAAAAAT+GGG | + | chr5.1:34125472-34125491 | MS.gene071075:CDS | 20.0% |
| !! | TTACCTATAAAAGATATACT+TGG | + | chr5.1:34125733-34125752 | MS.gene071075:intron | 20.0% |
| !!! | ACATTTTGTTATTTTTAACG+TGG | - | chr5.1:34126028-34126047 | None:intergenic | 20.0% |
| ! | AAAAGTTGCTTAATCAAGAT+AGG | + | chr5.1:34125463-34125482 | MS.gene071075:CDS | 25.0% |
| ! | ATAGAATTGAAGTCATTAGT+TGG | - | chr5.1:34125420-34125439 | None:intergenic | 25.0% |
| ! | ATCATAGCTATATGTAATTG+TGG | + | chr5.1:34126127-34126146 | MS.gene071075:intron | 25.0% |
| ! | CTTAATCAAGATAGGAAAAA+TGG | + | chr5.1:34125471-34125490 | MS.gene071075:CDS | 25.0% |
| ! | GTAAAATAAGGAAAAGAGTA+TGG | - | chr5.1:34125037-34125056 | None:intergenic | 25.0% |
| ! | TAAATTACACACACAATTGA+TGG | - | chr5.1:34126656-34126675 | None:intergenic | 25.0% |
| ! | TGACTTCAATTCTATCTTTA+AGG | + | chr5.1:34125425-34125444 | MS.gene071075:CDS | 25.0% |
| !! | ACATTTTAAATATGGAGAAG+TGG | - | chr5.1:34125908-34125927 | None:intergenic | 25.0% |
| !! | ATTTTAAATATGGAGAAGTG+GGG | - | chr5.1:34125906-34125925 | None:intergenic | 25.0% |
| !! | CATTTTAAATATGGAGAAGT+GGG | - | chr5.1:34125907-34125926 | None:intergenic | 25.0% |
| !! | TATCTTGATTAAGCAACTTT+TGG | - | chr5.1:34125464-34125483 | None:intergenic | 25.0% |
| !! | TCTCCAAGTATATCTTTTAT+AGG | - | chr5.1:34125739-34125758 | None:intergenic | 25.0% |
| !! | TTGATGATTGATAGAGTATT+TGG | - | chr5.1:34125315-34125334 | None:intergenic | 25.0% |
| !!! | ATTTTGGAACTCAATAATCA+AGG | + | chr5.1:34126476-34126495 | MS.gene071075:intron | 25.0% |
| !!! | CTTATGACTTGTTAATTGAA+TGG | - | chr5.1:34125352-34125371 | None:intergenic | 25.0% |
| AAAATGGTGCTTACATTTCT+AGG | + | chr5.1:34126335-34126354 | MS.gene071075:CDS | 30.0% | |
| ACAAAGTGCAAGTAACTATT+AGG | - | chr5.1:34125552-34125571 | None:intergenic | 30.0% | |
| AGAAGTAATGAAAAGAAGGT+AGG | - | chr5.1:34125617-34125636 | None:intergenic | 30.0% | |
| CAAAGTGCAAGTAACTATTA+GGG | - | chr5.1:34125551-34125570 | None:intergenic | 30.0% | |
| CAATCTATGATGAACAGAAA+AGG | + | chr5.1:34126180-34126199 | MS.gene071075:CDS | 30.0% | |
| ! | AACCTGTAATGAGGAATTTT+TGG | - | chr5.1:34124984-34125003 | None:intergenic | 30.0% |
| ! | AATTGATGGTCAAACATTGA+CGG | - | chr5.1:34126642-34126661 | None:intergenic | 30.0% |
| ! | ATTAGTTGTTGGTGGAAAAA+TGG | + | chr5.1:34126319-34126338 | MS.gene071075:CDS | 30.0% |
| ! | CAGCTCACACATTTTAAATA+TGG | - | chr5.1:34125916-34125935 | None:intergenic | 30.0% |
| !! | ACAGAAAAAAGCATCAGATA+AGG | + | chr5.1:34125197-34125216 | MS.gene071075:intron | 30.0% |
| !! | GGTTATTTCTTGCTTATGTT+AGG | + | chr5.1:34126148-34126167 | MS.gene071075:intron | 30.0% |
| !!! | TTAAGCAACTTTTGGAATTC+AGG | - | chr5.1:34125456-34125475 | None:intergenic | 30.0% |
| ACAGAAAAGGTCTTTGAACA+AGG | + | chr5.1:34126193-34126212 | MS.gene071075:CDS | 35.0% | |
| AGACTCTAAATTCAGTAGAG+TGG | - | chr5.1:34125383-34125402 | None:intergenic | 35.0% | |
| AGGTCTGAAGAATTAGTTGT+TGG | + | chr5.1:34126308-34126327 | MS.gene071075:CDS | 35.0% | |
| AGTCTTCCATAAAATGAACC+AGG | - | chr5.1:34125525-34125544 | None:intergenic | 35.0% | |
| CAGAAAAGGTCTTTGAACAA+GGG | + | chr5.1:34126194-34126213 | MS.gene071075:CDS | 35.0% | |
| CTGTGAGACTAGAATAGTAA+AGG | - | chr5.1:34126423-34126442 | None:intergenic | 35.0% | |
| CTTTACTATTCTAGTCTCAC+AGG | + | chr5.1:34126421-34126440 | MS.gene071075:CDS | 35.0% | |
| GTCTTCCATAAAATGAACCA+GGG | - | chr5.1:34125524-34125543 | None:intergenic | 35.0% | |
| TAACCTCCCATAAAAATGGA+AGG | - | chr5.1:34125501-34125520 | None:intergenic | 35.0% | |
| TCTGAAGAATTAGTTGTTGG+TGG | + | chr5.1:34126311-34126330 | MS.gene071075:CDS | 35.0% | |
| TGAAAGCCAGTGTAAACTAT+GGG | - | chr5.1:34125583-34125602 | None:intergenic | 35.0% | |
| TGCCAAAAATTCCTCATTAC+AGG | + | chr5.1:34124979-34124998 | MS.gene071075:CDS | 35.0% | |
| TTCTGTTCATCATAGATTGC+AGG | - | chr5.1:34126179-34126198 | None:intergenic | 35.0% | |
| TTGAAAGCCAGTGTAAACTA+TGG | - | chr5.1:34125584-34125603 | None:intergenic | 35.0% | |
| TTGACAGAGACAAATGCATA+GGG | + | chr5.1:34125858-34125877 | MS.gene071075:intron | 35.0% | |
| ! | AAAGTGTTTCATATGACTGG+AGG | + | chr5.1:34124938-34124957 | MS.gene071075:CDS | 35.0% |
| ! | CTTACATTTCTAGGAAGAAG+AGG | + | chr5.1:34126344-34126363 | MS.gene071075:CDS | 35.0% |
| ! | GAAACAACACCAAAGAGTAT+AGG | + | chr5.1:34125261-34125280 | MS.gene071075:CDS | 35.0% |
| !! | AGTATAGGCATTGCTGATTT+GGG | + | chr5.1:34125276-34125295 | MS.gene071075:CDS | 35.0% |
| !! | ATAGTTTACACTGGCTTTCA+AGG | + | chr5.1:34125583-34125602 | MS.gene071075:CDS | 35.0% |
| !! | GAGAAAGTGTTTCATATGAC+TGG | + | chr5.1:34124935-34124954 | MS.gene071075:CDS | 35.0% |
| !! | GGGTTTCCTTCCATTTTTAT+GGG | + | chr5.1:34125492-34125511 | MS.gene071075:CDS | 35.0% |
| !! | TAGTTTACACTGGCTTTCAA+GGG | + | chr5.1:34125584-34125603 | MS.gene071075:CDS | 35.0% |
| !! | TGGGTTTCCTTCCATTTTTA+TGG | + | chr5.1:34125491-34125510 | MS.gene071075:CDS | 35.0% |
| !! | TTTCCTTCCATTTTTATGGG+AGG | + | chr5.1:34125495-34125514 | MS.gene071075:CDS | 35.0% |
| !!! | TTTTTTCCCAAGTAGTCTAG+TGG | - | chr5.1:34125942-34125961 | None:intergenic | 35.0% |
| AGGAGAATGAACCTGTAATG+AGG | - | chr5.1:34124993-34125012 | None:intergenic | 40.0% | |
| AGGGTAACCTCCCATAAAAA+TGG | - | chr5.1:34125505-34125524 | None:intergenic | 40.0% | |
| ATGTGATAAAAGCCCTGAAG+TGG | + | chr5.1:34126229-34126248 | MS.gene071075:CDS | 40.0% | |
| ATTCCTCCCATAGTTTACAC+TGG | + | chr5.1:34125574-34125593 | MS.gene071075:CDS | 40.0% | |
| ATTCTTCAGACCTTGATCGA+AGG | - | chr5.1:34126301-34126320 | None:intergenic | 40.0% | |
| GTTGACAGAGACAAATGCAT+AGG | + | chr5.1:34125857-34125876 | MS.gene071075:intron | 40.0% | |
| TCAGCAATGCCTATACTCTT+TGG | - | chr5.1:34125273-34125292 | None:intergenic | 40.0% | |
| TGACAGAGACAAATGCATAG+GGG | + | chr5.1:34125859-34125878 | MS.gene071075:intron | 40.0% | |
| TGTCAACTGAGTTAAACCCA+CGG | - | chr5.1:34125844-34125863 | None:intergenic | 40.0% | |
| TGTTCATCATAGATTGCAGG+AGG | - | chr5.1:34126176-34126195 | None:intergenic | 40.0% | |
| TTCCTGAAACTGCTTAGAGT+AGG | - | chr5.1:34126264-34126283 | None:intergenic | 40.0% | |
| TTTCATATGACTGGAGGAGT+TGG | + | chr5.1:34124944-34124963 | MS.gene071075:CDS | 40.0% | |
| TTTCCTTGTTCCTTCGATCA+AGG | + | chr5.1:34126288-34126307 | MS.gene071075:CDS | 40.0% | |
| ! | ATTTTTATGGGAGGTTACCC+TGG | + | chr5.1:34125504-34125523 | MS.gene071075:CDS | 40.0% |
| ! | GAGTATAGGCATTGCTGATT+TGG | + | chr5.1:34125275-34125294 | MS.gene071075:CDS | 40.0% |
| ! | GGTTACCCTGGTTCATTTTA+TGG | + | chr5.1:34125516-34125535 | MS.gene071075:CDS | 40.0% |
| AAGCCAGTGTAAACTATGGG+AGG | - | chr5.1:34125580-34125599 | None:intergenic | 45.0% | |
| ACAGAGGCAACTCTTTCTTC+TGG | + | chr5.1:34126381-34126400 | MS.gene071075:CDS | 45.0% | |
| AGACCTTGATCGAAGGAACA+AGG | - | chr5.1:34126294-34126313 | None:intergenic | 45.0% | |
| AGAGACAAATGCATAGGGGT+CGG | + | chr5.1:34125863-34125882 | MS.gene071075:intron | 45.0% | |
| AGCCTACTCTAAGCAGTTTC+AGG | + | chr5.1:34126259-34126278 | MS.gene071075:CDS | 45.0% | |
| AGGCTTGAGAAACCACTTCA+GGG | - | chr5.1:34126244-34126263 | None:intergenic | 45.0% | |
| ATGAGTACTCTTAGTCTCCG+TGG | + | chr5.1:34125824-34125843 | MS.gene071075:intron | 45.0% | |
| CAGAGGCAACTCTTTCTTCT+GGG | + | chr5.1:34126382-34126401 | MS.gene071075:CDS | 45.0% | |
| TAGGCTTGAGAAACCACTTC+AGG | - | chr5.1:34126245-34126264 | None:intergenic | 45.0% | |
| TGAGTACTCTTAGTCTCCGT+GGG | + | chr5.1:34125825-34125844 | MS.gene071075:intron | 45.0% | |
| TTGCCTCTGTCAACATGTTC+AGG | - | chr5.1:34126371-34126390 | None:intergenic | 45.0% | |
| TTTCCCAAGTAGTCTAGTGG+CGG | - | chr5.1:34125939-34125958 | None:intergenic | 45.0% | |
| !! | GCTGATTTGGGATGTTCATC+TGG | + | chr5.1:34125288-34125307 | MS.gene071075:CDS | 45.0% |
| !!! | AATAATTTATCAAAATTTTA+AGG | - | chr5.1:34125059-34125078 | None:intergenic | 5.0% |
| GAGACAAATGCATAGGGGTC+GGG | + | chr5.1:34125864-34125883 | MS.gene071075:intron | 50.0% | |
| GGACCTGAACATGTTGACAG+AGG | + | chr5.1:34126365-34126384 | MS.gene071075:CDS | 50.0% | |
| ! | ATATGGAGAAGTGGGGTGTC+CGG | - | chr5.1:34125899-34125918 | None:intergenic | 50.0% |
| CTGCCGCCACTAGACTACTT+GGG | + | chr5.1:34125933-34125952 | MS.gene071075:intron | 55.0% | |
| ! | TATGGAGAAGTGGGGTGTCC+GGG | - | chr5.1:34125898-34125917 | None:intergenic | 55.0% |
| GCTGCCGCCACTAGACTACT+TGG | + | chr5.1:34125932-34125951 | MS.gene071075:intron | 60.0% | |
| ! | ATGGAGAAGTGGGGTGTCCG+GGG | - | chr5.1:34125897-34125916 | None:intergenic | 60.0% |
| AGGGGTCGGGTTTCGAACCC+CGG | + | chr5.1:34125877-34125896 | MS.gene071075:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 34124926 | 34126682 | 34124926 | ID=MS.gene071075 |
| chr5.1 | mRNA | 34124926 | 34126682 | 34124926 | ID=MS.gene071075.t1;Parent=MS.gene071075 |
| chr5.1 | exon | 34124926 | 34125000 | 34124926 | ID=MS.gene071075.t1.exon1;Parent=MS.gene071075.t1 |
| chr5.1 | CDS | 34124926 | 34125000 | 34124926 | ID=cds.MS.gene071075.t1;Parent=MS.gene071075.t1 |
| chr5.1 | exon | 34125201 | 34125605 | 34125201 | ID=MS.gene071075.t1.exon2;Parent=MS.gene071075.t1 |
| chr5.1 | CDS | 34125201 | 34125605 | 34125201 | ID=cds.MS.gene071075.t1;Parent=MS.gene071075.t1 |
| chr5.1 | exon | 34126170 | 34126442 | 34126170 | ID=MS.gene071075.t1.exon3;Parent=MS.gene071075.t1 |
| chr5.1 | CDS | 34126170 | 34126442 | 34126170 | ID=cds.MS.gene071075.t1;Parent=MS.gene071075.t1 |
| chr5.1 | exon | 34126680 | 34126682 | 34126680 | ID=MS.gene071075.t1.exon4;Parent=MS.gene071075.t1 |
| chr5.1 | CDS | 34126680 | 34126682 | 34126680 | ID=cds.MS.gene071075.t1;Parent=MS.gene071075.t1 |
| Gene Sequence |
| Protein sequence |
