Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07145.t1 | KEH43285.1 | 97.7 | 311 | 7 | 0 | 1 | 311 | 2019 | 2329 | 2.20E-180 | 641.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07145.t1 | F4IN58 | 72.2 | 313 | 85 | 2 | 1 | 311 | 2147 | 2459 | 1.0e-133 | 477.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07145.t1 | A0A072VYZ6 | 97.7 | 311 | 7 | 0 | 1 | 311 | 2019 | 2329 | 1.6e-180 | 641.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene07145 | 0.802566 | 5.28E-49 | -1.69E-46 |
| MS.gene049321 | MS.gene07145 | -0.819748 | 9.87E-53 | -1.69E-46 |
| MS.gene049343 | MS.gene07145 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene07145 | 0.823902 | 1.08E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene07145 | 0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene052790 | MS.gene07145 | 0.804836 | 1.78E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene07145 | 0.81586 | 7.45E-52 | -1.69E-46 |
| MS.gene058009 | MS.gene07145 | 0.80274 | 4.86E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene07145 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene07145 | 0.807654 | 4.55E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene07145 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene07145 | 0.801012 | 1.10E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene07145 | 0.836655 | 8.24E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene07145 | 0.828941 | 6.80E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07145.t1 | MTR_1g089760 | 97.749 | 311 | 7 | 0 | 1 | 311 | 2019 | 2329 | 0.0 | 644 |
| MS.gene07145.t1 | MTR_7g113930 | 70.833 | 312 | 86 | 4 | 1 | 311 | 2155 | 2462 | 2.12e-147 | 458 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07145.t1 | AT2G48060 | 72.204 | 313 | 85 | 2 | 1 | 311 | 2058 | 2370 | 2.06e-153 | 475 |
| MS.gene07145.t1 | AT2G48060 | 72.204 | 313 | 85 | 2 | 1 | 311 | 2147 | 2459 | 3.26e-153 | 474 |
| MS.gene07145.t1 | AT2G48060 | 72.204 | 313 | 85 | 2 | 1 | 311 | 2170 | 2482 | 4.03e-153 | 474 |
Find 74 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGGATTAATATCTTTAA+AGG | 0.181105 | 1.4:+71131537 | None:intergenic |
| CTGAAAGCTAGCATCTTTAA+TGG | 0.250758 | 1.4:+71132157 | None:intergenic |
| TTCACAACTTCTTTCCCTTT+TGG | 0.252296 | 1.4:+71131861 | None:intergenic |
| ACGGCTCGATGAACAGCTTT+AGG | 0.256226 | 1.4:-71131776 | MS.gene07145:CDS |
| CAAAATCTACTTAAATTTGA+TGG | 0.266938 | 1.4:+71131520 | None:intergenic |
| TACTTTCGTGTCACTGGTTC+AGG | 0.284190 | 1.4:-71131732 | MS.gene07145:CDS |
| TGAAAGCTAGCATCTTTAAT+GGG | 0.295745 | 1.4:+71132158 | None:intergenic |
| ATTGCTTCAGAGGGTATTCT+TGG | 0.300315 | 1.4:-71131355 | MS.gene07145:intron |
| GAGTTGAAGAGGTCCTTTAC+TGG | 0.313817 | 1.4:-71130967 | MS.gene07145:CDS |
| TTCAGGTGACGTTAGGCCTT+TGG | 0.348498 | 1.4:-71131715 | MS.gene07145:CDS |
| AAGCTGATGCTAGTACATTA+TGG | 0.371848 | 1.4:-71131980 | MS.gene07145:CDS |
| ATGGGGTTTGCAATGTTTGT+TGG | 0.382653 | 1.4:+71132176 | None:intergenic |
| TTCTTTCACACAGAGTAGTT+TGG | 0.390110 | 1.4:+71132096 | None:intergenic |
| GACTCCAGTGCTCTGACTTA+AGG | 0.391376 | 1.4:-71131261 | MS.gene07145:CDS |
| TGGGGTTTGCAATGTTTGTT+GGG | 0.393076 | 1.4:+71132177 | None:intergenic |
| ATAACCTTTGTTCTAGCTGT+TGG | 0.429148 | 1.4:-71131295 | MS.gene07145:CDS |
| CCAAGATACTTTCGTGTCAC+TGG | 0.430082 | 1.4:-71131738 | MS.gene07145:CDS |
| CTTTCAAGGGACAGGCCAAA+AGG | 0.448987 | 1.4:-71131876 | MS.gene07145:CDS |
| AGAACCTACCTTCCTGTGAT+AGG | 0.454253 | 1.4:-71131222 | MS.gene07145:intron |
| CAGCTTGACAGCATATCAAC+TGG | 0.458708 | 1.4:+71131997 | None:intergenic |
| GCAAGAGCTGAGGGTGAGCT+TGG | 0.459846 | 1.4:-71130989 | MS.gene07145:CDS |
| CACTCAGCAAGTTCAGCATA+TGG | 0.460896 | 1.4:-71131327 | MS.gene07145:CDS |
| TGGAGGTTTGACAGGACCTA+TGG | 0.461583 | 1.4:-71131497 | MS.gene07145:CDS |
| ACTCAGCAAGTTCAGCATAT+GGG | 0.461832 | 1.4:-71131326 | MS.gene07145:CDS |
| CCAGTGACACGAAAGTATCT+TGG | 0.464738 | 1.4:+71131738 | None:intergenic |
| CCATGTCAGAATACCATTCA+AGG | 0.464945 | 1.4:+71131919 | None:intergenic |
| GGAAGATATAGAGAATCAAT+AGG | 0.486362 | 1.4:+71131828 | None:intergenic |
| TCACTGGTTCAGGTGACGTT+AGG | 0.490457 | 1.4:-71131722 | MS.gene07145:CDS |
| AGGTGACGTTAGGCCTTTGG+AGG | 0.494230 | 1.4:-71131712 | MS.gene07145:CDS |
| ATTGTATATATCCTCGCAAA+TGG | 0.496193 | 1.4:+71131012 | None:intergenic |
| ATATGCATTCAAATAGCCAT+TGG | 0.502359 | 1.4:+71132034 | None:intergenic |
| TTTCACCTGGATACTTTCAA+GGG | 0.512095 | 1.4:-71131889 | MS.gene07145:CDS |
| TATGCATTCAAATAGCCATT+GGG | 0.512490 | 1.4:+71132035 | None:intergenic |
| CCTGGATACTTTCAAGGGAC+AGG | 0.512688 | 1.4:-71131884 | MS.gene07145:CDS |
| CTCAGCAAGTTCAGCATATG+GGG | 0.514491 | 1.4:-71131325 | MS.gene07145:CDS |
| TGACGTTAGGCCTTTGGAGG+AGG | 0.518527 | 1.4:-71131709 | MS.gene07145:intron |
| CTGAATTGAGCGAATCCCAC+TGG | 0.518646 | 1.4:+71132072 | None:intergenic |
| TCAGATATTATGATTGCCAT+AGG | 0.527721 | 1.4:+71131481 | None:intergenic |
| TTTCAAGGGACAGGCCAAAA+GGG | 0.530731 | 1.4:-71131875 | MS.gene07145:CDS |
| CCTGTCCCTTGAAAGTATCC+AGG | 0.533162 | 1.4:+71131884 | None:intergenic |
| GACTGGTTCAGTCCCTTGAA+TGG | 0.533492 | 1.4:-71131932 | MS.gene07145:CDS |
| AAAGCTATGGTACCTATCAC+AGG | 0.543993 | 1.4:+71131210 | None:intergenic |
| ATTGATATCAAGACAGAGAG+TGG | 0.550659 | 1.4:-71132134 | MS.gene07145:CDS |
| TCTTCACTAGTGTCCAGTAA+AGG | 0.556728 | 1.4:+71130954 | None:intergenic |
| TCGTGAGCAGTTTGAGTGGT+GGG | 0.557697 | 1.4:-71131560 | MS.gene07145:CDS |
| CCTTGAATGGTATTCTGACA+TGG | 0.560789 | 1.4:-71131919 | MS.gene07145:CDS |
| ACATGTTGTTCAGACTAGAC+TGG | 0.567876 | 1.4:-71131949 | MS.gene07145:CDS |
| TGTATTCAAGAAGCATGTGC+GGG | 0.570636 | 1.4:+71130921 | None:intergenic |
| GGACACTAGTGAAGATCTAT+CGG | 0.576864 | 1.4:-71130946 | MS.gene07145:CDS |
| CATGTCAGAATACCATTCAA+GGG | 0.578459 | 1.4:+71131920 | None:intergenic |
| TCATCCTTAAGTCAGAGCAC+TGG | 0.581880 | 1.4:+71131257 | None:intergenic |
| ATATCAAGACAGAGAGTGGA+AGG | 0.587632 | 1.4:-71132130 | MS.gene07145:CDS |
| TCCTTTCAGATGTATAGCAG+TGG | 0.592866 | 1.4:-71132203 | None:intergenic |
| ACAGGAAGGTAGGTTCTCGT+AGG | 0.593126 | 1.4:+71131228 | None:intergenic |
| CAGGAAGGTAGGTTCTCGTA+GGG | 0.594755 | 1.4:+71131229 | None:intergenic |
| GAAAGCTAGCATCTTTAATG+GGG | 0.597298 | 1.4:+71132159 | None:intergenic |
| TCATCTATTACCTCCTCCAA+AGG | 0.600980 | 1.4:+71131699 | None:intergenic |
| TATGGCAATCATAATATCTG+AGG | 0.601706 | 1.4:-71131479 | MS.gene07145:CDS |
| GGGTGAGCTTGGAGTTGAAG+AGG | 0.605897 | 1.4:-71130978 | MS.gene07145:CDS |
| GATGACAATGCTGATCCCAA+TGG | 0.606797 | 1.4:-71132050 | MS.gene07145:CDS |
| GGTACCTATCACAGGAAGGT+AGG | 0.611509 | 1.4:+71131218 | None:intergenic |
| TATATACAATGCAAGAGCTG+AGG | 0.615847 | 1.4:-71130999 | MS.gene07145:CDS |
| ATCGTGAGCAGTTTGAGTGG+TGG | 0.615857 | 1.4:-71131561 | MS.gene07145:CDS |
| ATATACAATGCAAGAGCTGA+GGG | 0.619238 | 1.4:-71130998 | MS.gene07145:CDS |
| GTGTATTCAAGAAGCATGTG+CGG | 0.620895 | 1.4:+71130920 | None:intergenic |
| CTCTGTGTGAAAGAATCCAG+TGG | 0.631996 | 1.4:-71132088 | MS.gene07145:CDS |
| GCGTCCAACAGCTAGAACAA+AGG | 0.633800 | 1.4:+71131291 | None:intergenic |
| AGTCTAGTCTGAACAACATG+TGG | 0.639445 | 1.4:+71131951 | None:intergenic |
| TAAATCGTGAGCAGTTTGAG+TGG | 0.645308 | 1.4:-71131564 | MS.gene07145:CDS |
| TCTGTGTGAAAGAATCCAGT+GGG | 0.651499 | 1.4:-71132087 | MS.gene07145:CDS |
| TAGGTTGATAGCCATTTGCG+AGG | 0.663891 | 1.4:-71131023 | MS.gene07145:CDS |
| CTATGGTACCTATCACAGGA+AGG | 0.669859 | 1.4:+71131214 | None:intergenic |
| GTATTCAAGAAGCATGTGCG+GGG | 0.685438 | 1.4:+71130922 | None:intergenic |
| TCAGCAAGTTCAGCATATGG+GGG | 0.719833 | 1.4:-71131324 | MS.gene07145:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTACAATGAAATTTTT+CGG | + | chr1.4:71131684-71131703 | None:intergenic | 10.0% |
| !!! | AAAATTTTCAATAGCAATTT+AGG | + | chr1.4:71131473-71131492 | None:intergenic | 15.0% |
| !!! | AATTTTGAATTCAATTTTTC+AGG | - | chr1.4:71131487-71131506 | MS.gene07145:CDS | 15.0% |
| !! | CAAAATCTACTTAAATTTGA+TGG | + | chr1.4:71131584-71131603 | None:intergenic | 20.0% |
| !! | TTTATATTCATTCATTTGCA+TGG | + | chr1.4:71131932-71131951 | None:intergenic | 20.0% |
| !!! | TCAAATTTAAGTAGATTTTG+TGG | - | chr1.4:71131584-71131603 | MS.gene07145:CDS | 20.0% |
| !!! | TGATGGATTAATATCTTTAA+AGG | + | chr1.4:71131567-71131586 | None:intergenic | 20.0% |
| ! | GATGTTCAAAAAGTTCTTAA+CGG | - | chr1.4:71131306-71131325 | MS.gene07145:CDS | 25.0% |
| ! | TTGATTTCAGAAATTCTCAA+GGG | + | chr1.4:71131963-71131982 | None:intergenic | 25.0% |
| !! | AATTTAAGTAGATTTTGTGG+AGG | - | chr1.4:71131587-71131606 | MS.gene07145:CDS | 25.0% |
| !! | ATTGATTTCAGAAATTCTCA+AGG | + | chr1.4:71131964-71131983 | None:intergenic | 25.0% |
| AGCAATTTAGGAACAATCAA+AGG | + | chr1.4:71131461-71131480 | None:intergenic | 30.0% | |
| ATATGCATTCAAATAGCCAT+TGG | + | chr1.4:71131070-71131089 | None:intergenic | 30.0% | |
| ATTGTATATATCCTCGCAAA+TGG | + | chr1.4:71132092-71132111 | None:intergenic | 30.0% | |
| GGAAGATATAGAGAATCAAT+AGG | + | chr1.4:71131276-71131295 | None:intergenic | 30.0% | |
| GGCAATATTAGAAACACTAT+GGG | + | chr1.4:71131724-71131743 | None:intergenic | 30.0% | |
| TATGCATTCAAATAGCCATT+GGG | + | chr1.4:71131069-71131088 | None:intergenic | 30.0% | |
| TATGGCAATCATAATATCTG+AGG | - | chr1.4:71131622-71131641 | MS.gene07145:intron | 30.0% | |
| TCAGATATTATGATTGCCAT+AGG | + | chr1.4:71131623-71131642 | None:intergenic | 30.0% | |
| TGAAAGCTAGCATCTTTAAT+GGG | + | chr1.4:71130946-71130965 | None:intergenic | 30.0% | |
| TGGCAATATTAGAAACACTA+TGG | + | chr1.4:71131725-71131744 | None:intergenic | 30.0% | |
| TTGTTACATGCTTCTAATGT+AGG | - | chr1.4:71132059-71132078 | MS.gene07145:CDS | 30.0% | |
| !! | ACACTATGGGAAGTATTATT+AGG | + | chr1.4:71131711-71131730 | None:intergenic | 30.0% |
| !! | TTTTTCGGAGAAAAATTGCA+TGG | + | chr1.4:71131669-71131688 | None:intergenic | 30.0% |
| !! | TTTTTCTGGAAAGAAAGCTA+TGG | + | chr1.4:71131907-71131926 | None:intergenic | 30.0% |
| !!! | ACATGGAAATTTTTTTCACC+TGG | - | chr1.4:71131199-71131218 | MS.gene07145:intron | 30.0% |
| AAGCTGATGCTAGTACATTA+TGG | - | chr1.4:71131121-71131140 | MS.gene07145:intron | 35.0% | |
| ATATACAATGCAAGAGCTGA+GGG | - | chr1.4:71132103-71132122 | MS.gene07145:CDS | 35.0% | |
| ATATTGCCATATTGCTTCAG+AGG | - | chr1.4:71131736-71131755 | MS.gene07145:CDS | 35.0% | |
| ATTGATATCAAGACAGAGAG+TGG | - | chr1.4:71130967-71130986 | MS.gene07145:CDS | 35.0% | |
| CATGTCAGAATACCATTCAA+GGG | + | chr1.4:71131184-71131203 | None:intergenic | 35.0% | |
| CTGAAAGCTAGCATCTTTAA+TGG | + | chr1.4:71130947-71130966 | None:intergenic | 35.0% | |
| CTTATTTAAGAGACATCCTG+TGG | - | chr1.4:71132020-71132039 | MS.gene07145:CDS | 35.0% | |
| GAAAGCTAGCATCTTTAATG+GGG | + | chr1.4:71130945-71130964 | None:intergenic | 35.0% | |
| TATATACAATGCAAGAGCTG+AGG | - | chr1.4:71132102-71132121 | MS.gene07145:CDS | 35.0% | |
| TATTGCCATATTGCTTCAGA+GGG | - | chr1.4:71131737-71131756 | MS.gene07145:CDS | 35.0% | |
| TTCTTTCACACAGAGTAGTT+TGG | + | chr1.4:71131008-71131027 | None:intergenic | 35.0% | |
| TTTCACCTGGATACTTTCAA+GGG | - | chr1.4:71131212-71131231 | MS.gene07145:intron | 35.0% | |
| ! | ATAACCTTTGTTCTAGCTGT+TGG | - | chr1.4:71131806-71131825 | MS.gene07145:CDS | 35.0% |
| ! | TTCACAACTTCTTTCCCTTT+TGG | + | chr1.4:71131243-71131262 | None:intergenic | 35.0% |
| ! | TTTTCACCTGGATACTTTCA+AGG | - | chr1.4:71131211-71131230 | MS.gene07145:intron | 35.0% |
| ! | TTTTGAACATCAGACTGTGT+TGG | + | chr1.4:71131297-71131316 | None:intergenic | 35.0% |
| !!! | TCATTTGCATGGCTTTTTTC+TGG | + | chr1.4:71131921-71131940 | None:intergenic | 35.0% |
| AAAGCTATGGTACCTATCAC+AGG | + | chr1.4:71131894-71131913 | None:intergenic | 40.0% | |
| ACATGTTGTTCAGACTAGAC+TGG | - | chr1.4:71131152-71131171 | MS.gene07145:intron | 40.0% | |
| ACTCAGCAAGTTCAGCATAT+GGG | - | chr1.4:71131775-71131794 | MS.gene07145:CDS | 40.0% | |
| AGTCTAGTCTGAACAACATG+TGG | + | chr1.4:71131153-71131172 | None:intergenic | 40.0% | |
| ATATCAAGACAGAGAGTGGA+AGG | - | chr1.4:71130971-71130990 | MS.gene07145:CDS | 40.0% | |
| ATGGGGTTTGCAATGTTTGT+TGG | + | chr1.4:71130928-71130947 | None:intergenic | 40.0% | |
| CCATGTCAGAATACCATTCA+AGG | + | chr1.4:71131185-71131204 | None:intergenic | 40.0% | |
| CCTTGAATGGTATTCTGACA+TGG | - | chr1.4:71131182-71131201 | MS.gene07145:intron | 40.0% | |
| GAAGTAACGTAAGTTACCAC+AGG | + | chr1.4:71132039-71132058 | None:intergenic | 40.0% | |
| GGACACTAGTGAAGATCTAT+CGG | - | chr1.4:71132155-71132174 | MS.gene07145:CDS | 40.0% | |
| TAAATCGTGAGCAGTTTGAG+TGG | - | chr1.4:71131537-71131556 | MS.gene07145:CDS | 40.0% | |
| TCATCTATTACCTCCTCCAA+AGG | + | chr1.4:71131405-71131424 | None:intergenic | 40.0% | |
| TCTGTGTGAAAGAATCCAGT+GGG | - | chr1.4:71131014-71131033 | MS.gene07145:CDS | 40.0% | |
| TCTTCACTAGTGTCCAGTAA+AGG | + | chr1.4:71132150-71132169 | None:intergenic | 40.0% | |
| TGGGGTTTGCAATGTTTGTT+GGG | + | chr1.4:71130927-71130946 | None:intergenic | 40.0% | |
| ! | AGATTTTGTGGAGGTTTGAC+AGG | - | chr1.4:71131596-71131615 | MS.gene07145:intron | 40.0% |
| ! | GTGTATTCAAGAAGCATGTG+CGG | + | chr1.4:71132184-71132203 | None:intergenic | 40.0% |
| ! | TGTATTCAAGAAGCATGTGC+GGG | + | chr1.4:71132183-71132202 | None:intergenic | 40.0% |
| !! | ATTGCTTCAGAGGGTATTCT+TGG | - | chr1.4:71131746-71131765 | MS.gene07145:CDS | 40.0% |
| !! | GAATACCCTCTGAAGCAATA+TGG | + | chr1.4:71131745-71131764 | None:intergenic | 40.0% |
| AATTGCATGGCCAACTTACG+TGG | + | chr1.4:71131656-71131675 | None:intergenic | 45.0% | |
| AGAACCTACCTTCCTGTGAT+AGG | - | chr1.4:71131879-71131898 | MS.gene07145:CDS | 45.0% | |
| CACTCAGCAAGTTCAGCATA+TGG | - | chr1.4:71131774-71131793 | MS.gene07145:CDS | 45.0% | |
| CAGCTTGACAGCATATCAAC+TGG | + | chr1.4:71131107-71131126 | None:intergenic | 45.0% | |
| CCAAGATACTTTCGTGTCAC+TGG | - | chr1.4:71131363-71131382 | MS.gene07145:intron | 45.0% | |
| CTATGGTACCTATCACAGGA+AGG | + | chr1.4:71131890-71131909 | None:intergenic | 45.0% | |
| CTCAGCAAGTTCAGCATATG+GGG | - | chr1.4:71131776-71131795 | MS.gene07145:CDS | 45.0% | |
| CTCTGTGTGAAAGAATCCAG+TGG | - | chr1.4:71131013-71131032 | MS.gene07145:CDS | 45.0% | |
| GAGTTGAAGAGGTCCTTTAC+TGG | - | chr1.4:71132134-71132153 | MS.gene07145:CDS | 45.0% | |
| GATGACAATGCTGATCCCAA+TGG | - | chr1.4:71131051-71131070 | MS.gene07145:intron | 45.0% | |
| TCAGCAAGTTCAGCATATGG+GGG | - | chr1.4:71131777-71131796 | MS.gene07145:CDS | 45.0% | |
| TCATCCTTAAGTCAGAGCAC+TGG | + | chr1.4:71131847-71131866 | None:intergenic | 45.0% | |
| TTTCAAGGGACAGGCCAAAA+GGG | - | chr1.4:71131226-71131245 | MS.gene07145:CDS | 45.0% | |
| ! | GTATTCAAGAAGCATGTGCG+GGG | + | chr1.4:71132182-71132201 | None:intergenic | 45.0% |
| !! | CCAGTGACACGAAAGTATCT+TGG | + | chr1.4:71131366-71131385 | None:intergenic | 45.0% |
| !! | TACTTTCGTGTCACTGGTTC+AGG | - | chr1.4:71131369-71131388 | MS.gene07145:intron | 45.0% |
| !! | TAGGTTGATAGCCATTTGCG+AGG | - | chr1.4:71132078-71132097 | MS.gene07145:CDS | 45.0% |
| ACAGGAAGGTAGGTTCTCGT+AGG | + | chr1.4:71131876-71131895 | None:intergenic | 50.0% | |
| ACGGCTCGATGAACAGCTTT+AGG | - | chr1.4:71131325-71131344 | MS.gene07145:CDS | 50.0% | |
| ATCGTGAGCAGTTTGAGTGG+TGG | - | chr1.4:71131540-71131559 | MS.gene07145:CDS | 50.0% | |
| CAGGAAGGTAGGTTCTCGTA+GGG | + | chr1.4:71131875-71131894 | None:intergenic | 50.0% | |
| CCTGGATACTTTCAAGGGAC+AGG | - | chr1.4:71131217-71131236 | MS.gene07145:intron | 50.0% | |
| CTGAATTGAGCGAATCCCAC+TGG | + | chr1.4:71131032-71131051 | None:intergenic | 50.0% | |
| CTTTCAAGGGACAGGCCAAA+AGG | - | chr1.4:71131225-71131244 | MS.gene07145:CDS | 50.0% | |
| GACTCCAGTGCTCTGACTTA+AGG | - | chr1.4:71131840-71131859 | MS.gene07145:CDS | 50.0% | |
| GCGTCCAACAGCTAGAACAA+AGG | + | chr1.4:71131813-71131832 | None:intergenic | 50.0% | |
| GGAAACACCACCACGTAAGT+TGG | - | chr1.4:71131643-71131662 | MS.gene07145:intron | 50.0% | |
| GGTACCTATCACAGGAAGGT+AGG | + | chr1.4:71131886-71131905 | None:intergenic | 50.0% | |
| TCGTGAGCAGTTTGAGTGGT+GGG | - | chr1.4:71131541-71131560 | MS.gene07145:CDS | 50.0% | |
| TGGAGGTTTGACAGGACCTA+TGG | - | chr1.4:71131604-71131623 | MS.gene07145:intron | 50.0% | |
| TTCAGGTGACGTTAGGCCTT+TGG | - | chr1.4:71131386-71131405 | MS.gene07145:intron | 50.0% | |
| ! | GACTGGTTCAGTCCCTTGAA+TGG | - | chr1.4:71131169-71131188 | MS.gene07145:intron | 50.0% |
| !! | CCTGTCCCTTGAAAGTATCC+AGG | + | chr1.4:71131220-71131239 | None:intergenic | 50.0% |
| !! | TCACTGGTTCAGGTGACGTT+AGG | - | chr1.4:71131379-71131398 | MS.gene07145:intron | 50.0% |
| AGGTGACGTTAGGCCTTTGG+AGG | - | chr1.4:71131389-71131408 | MS.gene07145:intron | 55.0% | |
| GGGTGAGCTTGGAGTTGAAG+AGG | - | chr1.4:71132123-71132142 | MS.gene07145:CDS | 55.0% | |
| TGCATGGCCAACTTACGTGG+TGG | + | chr1.4:71131653-71131672 | None:intergenic | 55.0% | |
| ! | TGACGTTAGGCCTTTGGAGG+AGG | - | chr1.4:71131392-71131411 | MS.gene07145:intron | 55.0% |
| GCAAGAGCTGAGGGTGAGCT+TGG | - | chr1.4:71132112-71132131 | MS.gene07145:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71130907 | 71132216 | 71130907 | ID=MS.gene07145 |
| chr1.4 | mRNA | 71130907 | 71132216 | 71130907 | ID=MS.gene07145.t1;Parent=MS.gene07145 |
| chr1.4 | exon | 71131710 | 71132216 | 71131710 | ID=MS.gene07145.t1.exon1;Parent=MS.gene07145.t1 |
| chr1.4 | CDS | 71131710 | 71132216 | 71131710 | ID=cds.MS.gene07145.t1;Parent=MS.gene07145.t1 |
| chr1.4 | exon | 71131467 | 71131614 | 71131467 | ID=MS.gene07145.t1.exon2;Parent=MS.gene07145.t1 |
| chr1.4 | CDS | 71131467 | 71131614 | 71131467 | ID=cds.MS.gene07145.t1;Parent=MS.gene07145.t1 |
| chr1.4 | exon | 71131223 | 71131367 | 71131223 | ID=MS.gene07145.t1.exon3;Parent=MS.gene07145.t1 |
| chr1.4 | CDS | 71131223 | 71131367 | 71131223 | ID=cds.MS.gene07145.t1;Parent=MS.gene07145.t1 |
| chr1.4 | exon | 71130907 | 71131042 | 71130907 | ID=MS.gene07145.t1.exon4;Parent=MS.gene07145.t1 |
| chr1.4 | CDS | 71130907 | 71131042 | 71130907 | ID=cds.MS.gene07145.t1;Parent=MS.gene07145.t1 |
| Gene Sequence |
| Protein sequence |
