Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071464.t1 | XP_013464289.1 | 90.5 | 778 | 68 | 3 | 1 | 774 | 254 | 1029 | 0.00E+00 | 1446.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071464.t1 | Q39202 | 44.3 | 799 | 389 | 16 | 8 | 769 | 32 | 811 | 6.2e-188 | 659.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071464.t1 | A0A072V8H5 | 90.5 | 778 | 68 | 3 | 1 | 774 | 254 | 1029 | 0.0e+00 | 1446.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene071464 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene071464 | 0.800932 | 1.14E-48 | -1.69E-46 |
| MS.gene051493 | MS.gene071464 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene071464 | 0.806627 | 7.50E-50 | -1.69E-46 |
| MS.gene054826 | MS.gene071464 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene071464 | 0.811818 | 5.79E-51 | -1.69E-46 |
| MS.gene058378 | MS.gene071464 | 0.807994 | 3.85E-50 | -1.69E-46 |
| MS.gene058426 | MS.gene071464 | 0.805314 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 150 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTCTCCTTGGATCTTT+AGG | 0.108076 | 2.3:-27660952 | None:intergenic |
| CATTGTGATTTCAGTTCTTT+TGG | 0.133605 | 2.3:+27661482 | MS.gene071464:CDS |
| AATGCAAGAATTTCAGATTT+TGG | 0.139251 | 2.3:+27662062 | MS.gene071464:CDS |
| TGACAAATAACTTGAAAATT+TGG | 0.149769 | 2.3:-27661153 | None:intergenic |
| GTTCTCTCCTTGGATCTTTA+GGG | 0.197843 | 2.3:-27660951 | None:intergenic |
| AATTGCTTGGCAAATTTATA+AGG | 0.241578 | 2.3:-27660705 | None:intergenic |
| TTGTCAAGCAGGTGGGAATT+TGG | 0.247455 | 2.3:+27661170 | MS.gene071464:CDS |
| CGAAGGACAACATCGCATTT+TGG | 0.256528 | 2.3:+27661851 | MS.gene071464:CDS |
| GTATCAACTTTAGCGGTTAT+TGG | 0.264878 | 2.3:-27662179 | None:intergenic |
| TTATATCACAATGGATGATT+TGG | 0.277242 | 2.3:-27662007 | None:intergenic |
| TTACATTCTTGTAAATTAGA+TGG | 0.282271 | 2.3:-27661270 | None:intergenic |
| GCAAGATTGCTTATGTGTTT+TGG | 0.284825 | 2.3:+27661305 | MS.gene071464:CDS |
| AGCTCATTGGCTCTCTGCTT+CGG | 0.298770 | 2.3:+27660252 | MS.gene071464:CDS |
| GCATAACTTTAGAGAAGAAT+TGG | 0.299436 | 2.3:+27661656 | MS.gene071464:CDS |
| AGGAATCTTGTCCGTCTTCT+TGG | 0.303112 | 2.3:+27661819 | MS.gene071464:CDS |
| GTAAATGATCCGGCGGTAAA+AGG | 0.304882 | 2.3:+27661381 | MS.gene071464:CDS |
| AGTTTGTCATGATAGCTATT+TGG | 0.305977 | 2.3:+27662384 | MS.gene071464:CDS |
| GAATCAGGCCAATCAATATT+TGG | 0.310517 | 2.3:-27661228 | None:intergenic |
| TCGTCTGGGCAGGTACAATT+TGG | 0.317868 | 2.3:-27661087 | None:intergenic |
| TTTGATCTTCTTGAGGTTGT+AGG | 0.318970 | 2.3:-27661559 | None:intergenic |
| TGCAAAACCTTCTTCATTGT+TGG | 0.326341 | 2.3:-27662434 | None:intergenic |
| GGCAGGTACAATTTGGCCTT+TGG | 0.327760 | 2.3:-27661080 | None:intergenic |
| ACCCTCAAGGTTTAGAGTTA+TGG | 0.328435 | 2.3:+27660443 | MS.gene071464:CDS |
| ATGTTGCACCAGATTGGTTT+AGG | 0.329979 | 2.3:+27662150 | MS.gene071464:CDS |
| TGTCAAGCAGGTGGGAATTT+GGG | 0.331531 | 2.3:+27661171 | MS.gene071464:CDS |
| ATTATGCAGCTTAGCATCAT+TGG | 0.334402 | 2.3:+27660183 | None:intergenic |
| AATCAAAGCCACACTGAAAC+TGG | 0.341350 | 2.3:+27662107 | MS.gene071464:CDS |
| ATTCTTCGAATCACCACTAA+TGG | 0.345889 | 2.3:-27660758 | None:intergenic |
| CGTTTGATATTTGACGAATC+AGG | 0.355023 | 2.3:+27660799 | MS.gene071464:CDS |
| AAAGTTGATACTTATAGTTT+TGG | 0.355959 | 2.3:+27662191 | MS.gene071464:CDS |
| ACCCAACTTTGTTCTCTCCT+TGG | 0.356341 | 2.3:-27660961 | None:intergenic |
| AAGAAGCTTCCACTATCTTA+TGG | 0.360174 | 2.3:+27661357 | MS.gene071464:CDS |
| GCTCATTGGCTCTCTGCTTC+GGG | 0.364932 | 2.3:+27660253 | MS.gene071464:CDS |
| ACATCAGGTACAATTTCTAA+TGG | 0.365880 | 2.3:+27660478 | MS.gene071464:CDS |
| CAAGATTCCTATGATGAGTT+TGG | 0.367214 | 2.3:-27661806 | None:intergenic |
| ACTTACAGAACCAAATAGAT+AGG | 0.370847 | 2.3:-27662498 | None:intergenic |
| TATATCACAATGGATGATTT+GGG | 0.372360 | 2.3:-27662006 | None:intergenic |
| CACACTGAAACTGGAATTAG+AGG | 0.377079 | 2.3:+27662116 | MS.gene071464:CDS |
| GCCAGCAAGAAAAGCTCATT+TGG | 0.377483 | 2.3:-27660304 | None:intergenic |
| AGGATTTACCAAATATTGAT+TGG | 0.392002 | 2.3:+27661220 | MS.gene071464:CDS |
| TTCAACTCCATTACTTGATT+CGG | 0.395529 | 2.3:-27660592 | None:intergenic |
| ATCTAATTTACAAGAATGTA+AGG | 0.400542 | 2.3:+27661272 | MS.gene071464:CDS |
| TTGACTCGTTGGTTCCAATC+TGG | 0.404060 | 2.3:-27661930 | None:intergenic |
| TTGATCTTCTTGAGGTTGTA+GGG | 0.407376 | 2.3:-27661558 | None:intergenic |
| TCGGTTGAGAATGACCCATT+TGG | 0.411830 | 2.3:-27660871 | None:intergenic |
| CTGGCAGTGGCACAGCTCAT+TGG | 0.412648 | 2.3:+27660239 | MS.gene071464:CDS |
| AATATCAATCTTGATCCCTT+AGG | 0.419865 | 2.3:-27660391 | None:intergenic |
| TACGCTTCTATGACCATTAG+TGG | 0.420790 | 2.3:+27660745 | MS.gene071464:CDS |
| TAAATTCCTTATCACTATCC+TGG | 0.422123 | 2.3:-27661761 | None:intergenic |
| TTCAAGAAGATCCTTCTCTT+AGG | 0.423078 | 2.3:+27662411 | MS.gene071464:CDS |
| TCAACCCATTAAAACCAGAT+TGG | 0.423252 | 2.3:+27661916 | MS.gene071464:CDS |
| TGTTAGAGATCATTTGTTGT+AGG | 0.427091 | 2.3:+27662222 | MS.gene071464:CDS |
| ATTAAATGATTCTCGTGGTT+TGG | 0.429869 | 2.3:+27660411 | MS.gene071464:CDS |
| TTTCAAGTTATTTGTCAAGC+AGG | 0.430943 | 2.3:+27661159 | MS.gene071464:CDS |
| ATAGATTCATAATCAGAATC+AGG | 0.431543 | 2.3:-27661243 | None:intergenic |
| AAGACTGAAATGAGTGTGAT+AGG | 0.434541 | 2.3:+27661783 | MS.gene071464:CDS |
| ATCTGGTGCAACATACCCTT+TGG | 0.445186 | 2.3:-27662141 | None:intergenic |
| TGGAGACAACCCTGCTCCTA+AGG | 0.447305 | 2.3:+27660375 | MS.gene071464:CDS |
| GTTGGTGAGTCACTTATTGC+TGG | 0.449819 | 2.3:+27660220 | MS.gene071464:CDS |
| TACAAGATGATGCCATCATT+TGG | 0.456066 | 2.3:+27660344 | MS.gene071464:CDS |
| GAAGAAAGATCATGATACTT+TGG | 0.456854 | 2.3:+27661458 | MS.gene071464:CDS |
| TGGAGATCAGATTTCACATC+AGG | 0.458613 | 2.3:+27660463 | MS.gene071464:CDS |
| AGAAAAGCTCATTTGGAAGT+TGG | 0.459486 | 2.3:-27660297 | None:intergenic |
| TCTTAGGCCAACAATGAAGA+AGG | 0.460960 | 2.3:+27662427 | MS.gene071464:CDS |
| AAGGGTATGTTGCACCAGAT+TGG | 0.461710 | 2.3:+27662144 | MS.gene071464:CDS |
| TCAATCGGAGAATATTCGTC+TGG | 0.461772 | 2.3:-27661102 | None:intergenic |
| TGATAGGCCAAACTCATCAT+AGG | 0.462004 | 2.3:+27661799 | MS.gene071464:CDS |
| ATCCAAGGAGAGAACAAAGT+TGG | 0.464128 | 2.3:+27660959 | MS.gene071464:CDS |
| CATAACTTTAGAGAAGAATT+GGG | 0.467042 | 2.3:+27661657 | MS.gene071464:CDS |
| AATCTTGATCCCTTAGGAGC+AGG | 0.472196 | 2.3:-27660385 | None:intergenic |
| TGGCCTTTGGTCATTTGTAA+TGG | 0.475228 | 2.3:-27661067 | None:intergenic |
| ATCTTATGGTGTAAATGATC+CGG | 0.475532 | 2.3:+27661371 | MS.gene071464:CDS |
| ATTTCTAATGGTCTAATGAA+TGG | 0.475658 | 2.3:+27660490 | MS.gene071464:CDS |
| ACTATAAGTATCAACTTTAG+CGG | 0.484284 | 2.3:-27662186 | None:intergenic |
| CCAACGAGTCAACATTATCC+TGG | 0.487083 | 2.3:+27661941 | MS.gene071464:CDS |
| AACCAAATAGATAGGGACTT+GGG | 0.489399 | 2.3:-27662490 | None:intergenic |
| AATCAAGTAATGGAGTTGAA+TGG | 0.490085 | 2.3:+27660595 | MS.gene071464:CDS |
| GGTGCACTCCTAAACCAATC+TGG | 0.500995 | 2.3:-27662158 | None:intergenic |
| GCCATCATTTGGTATGCAAA+TGG | 0.501021 | 2.3:+27660355 | MS.gene071464:CDS |
| TCCAAGGAGAGAACAAAGTT+GGG | 0.505348 | 2.3:+27660960 | MS.gene071464:CDS |
| TACATGTTATTTGAATCAAT+CGG | 0.508205 | 2.3:-27661117 | None:intergenic |
| GAAACTAGACAAGCTGATCC+AGG | 0.510146 | 2.3:+27661743 | MS.gene071464:CDS |
| TTTCTATCAGCAATCCAAAT+GGG | 0.511656 | 2.3:+27660857 | MS.gene071464:CDS |
| TCCATAACTCTAAACCTTGA+GGG | 0.511963 | 2.3:-27660444 | None:intergenic |
| CATTCTACATTCCGAGGTGA+AGG | 0.512098 | 2.3:+27661018 | MS.gene071464:CDS |
| TTCATTGTTGGCCTAAGAGA+AGG | 0.512858 | 2.3:-27662422 | None:intergenic |
| TTCCGAGGTGAAGGTGTATG+TGG | 0.514870 | 2.3:+27661027 | MS.gene071464:CDS |
| TTTAGAGAAGAATTGGGAAG+AGG | 0.515840 | 2.3:+27661663 | MS.gene071464:CDS |
| AAACTTCATCTACAAGAGGA+TGG | 0.517032 | 2.3:+27660667 | MS.gene071464:CDS |
| GCTGATCCAGGATAGTGATA+AGG | 0.524546 | 2.3:+27661755 | MS.gene071464:CDS |
| CGTTCAACTTCTCACAAGGA+AGG | 0.524847 | 2.3:+27660641 | MS.gene071464:CDS |
| CGGAGAATATTCGTCTGGGC+AGG | 0.525342 | 2.3:-27661097 | None:intergenic |
| ATCTTGATCCCTTAGGAGCA+GGG | 0.525739 | 2.3:-27660384 | None:intergenic |
| GGATCGTAACTGTAATTGCT+TGG | 0.527374 | 2.3:-27660718 | None:intergenic |
| TCATTTACACCATAAGATAG+TGG | 0.527988 | 2.3:-27661366 | None:intergenic |
| TTGGATCAAGGTGTAATTGT+TGG | 0.528401 | 2.3:+27660202 | MS.gene071464:CDS |
| TGATCTTCTTGAGGTTGTAG+GGG | 0.530226 | 2.3:-27661557 | None:intergenic |
| ATCTTTCTTCTCTTCTGACA+AGG | 0.531408 | 2.3:-27661445 | None:intergenic |
| TCCATTTGCATACCAAATGA+TGG | 0.533812 | 2.3:-27660356 | None:intergenic |
| TTGGTGCTCACTAACCCTCA+AGG | 0.536706 | 2.3:+27660430 | MS.gene071464:CDS |
| CAAGTTATTTGTCAAGCAGG+TGG | 0.537568 | 2.3:+27661162 | MS.gene071464:CDS |
| AACTTCATCTACAAGAGGAT+GGG | 0.538380 | 2.3:+27660668 | MS.gene071464:CDS |
| GTATATGAGTTAATGAGTAA+TGG | 0.539021 | 2.3:+27661873 | MS.gene071464:CDS |
| CCAGGATAATGTTGACTCGT+TGG | 0.543804 | 2.3:-27661941 | None:intergenic |
| GATTCAAATAACATGTATGC+TGG | 0.543919 | 2.3:+27661123 | MS.gene071464:CDS |
| CAACGAGTCAACATTATCCT+GGG | 0.548279 | 2.3:+27661942 | MS.gene071464:CDS |
| ATGGTCATAGAAGCGTAGTA+AGG | 0.550473 | 2.3:-27660739 | None:intergenic |
| ATCTTTAGGGTAAAATGCAA+TGG | 0.556056 | 2.3:-27660938 | None:intergenic |
| GGAGACAACCCTGCTCCTAA+GGG | 0.556911 | 2.3:+27660376 | MS.gene071464:CDS |
| AGATAATCTATATACAATGA+AGG | 0.564301 | 2.3:+27661200 | MS.gene071464:CDS |
| CAAGACCTCTTGCAATCCCC+AGG | 0.564619 | 2.3:-27661959 | None:intergenic |
| CTTACAGAACCAAATAGATA+GGG | 0.564659 | 2.3:-27662497 | None:intergenic |
| TGTTTGCATTCTACATTCCG+AGG | 0.566475 | 2.3:+27661012 | MS.gene071464:CDS |
| GTCTTGTTTACTTGCACGAG+GGG | 0.576372 | 2.3:+27661976 | MS.gene071464:CDS |
| TAGCAACGACATGATGTGCT+TGG | 0.579483 | 2.3:+27662358 | MS.gene071464:CDS |
| AGCTTAGCATCATTGGATCA+AGG | 0.579652 | 2.3:+27660190 | None:intergenic |
| CTCCATAACTCTAAACCTTG+AGG | 0.579836 | 2.3:-27660445 | None:intergenic |
| AAGTTATTTGTCAAGCAGGT+GGG | 0.582611 | 2.3:+27661163 | MS.gene071464:CDS |
| CTCTAATTCCAGTTTCAGTG+TGG | 0.592854 | 2.3:-27662115 | None:intergenic |
| AATGGTCTAATGAATGGTGA+TGG | 0.596383 | 2.3:+27660496 | MS.gene071464:CDS |
| ACCAAATAGATAGGGACTTG+GGG | 0.596946 | 2.3:-27662489 | None:intergenic |
| ATTAGTACCGAATCAAGTAA+TGG | 0.597148 | 2.3:+27660585 | MS.gene071464:CDS |
| GAACCAAATAGATAGGGACT+TGG | 0.597701 | 2.3:-27662491 | None:intergenic |
| GAGTCACTTATTGCTGGCAG+TGG | 0.597846 | 2.3:+27660226 | MS.gene071464:CDS |
| ATTGTATATAGATTATCTTG+TGG | 0.601063 | 2.3:-27661195 | None:intergenic |
| CAATCGGAGAATATTCGTCT+GGG | 0.609119 | 2.3:-27661101 | None:intergenic |
| CTTCTTGGATATTGCAACGA+AGG | 0.610776 | 2.3:+27661834 | MS.gene071464:CDS |
| TTGATATTAAATGATTCTCG+TGG | 0.610910 | 2.3:+27660406 | MS.gene071464:CDS |
| GGTCTTGTTTACTTGCACGA+GGG | 0.611526 | 2.3:+27661975 | MS.gene071464:CDS |
| TTTGTGGCTTTATATCACAA+TGG | 0.613464 | 2.3:-27662016 | None:intergenic |
| GTTTAAACTTCATCTACAAG+AGG | 0.614873 | 2.3:+27660663 | MS.gene071464:CDS |
| TCCGAGGTGAAGGTGTATGT+GGG | 0.615691 | 2.3:+27661028 | MS.gene071464:CDS |
| TGCTCTGCAGTAGAAATCAT+CGG | 0.616365 | 2.3:-27660890 | None:intergenic |
| TTTCTTCTCTTCTGACAAGG+AGG | 0.619267 | 2.3:-27661442 | None:intergenic |
| ACTGGAATTAGAGGAACCAA+AGG | 0.619437 | 2.3:+27662125 | MS.gene071464:CDS |
| CTGGAATTAGAGGAACCAAA+GGG | 0.621473 | 2.3:+27662126 | MS.gene071464:CDS |
| AGGTCTTGTTTACTTGCACG+AGG | 0.626779 | 2.3:+27661974 | MS.gene071464:CDS |
| CGTTGCAATATCCAAGAAGA+CGG | 0.627079 | 2.3:-27661830 | None:intergenic |
| TTCGGTACTAATGTGTCAGT+AGG | 0.630587 | 2.3:-27660574 | None:intergenic |
| ATTATCCTGGGGATTGCAAG+AGG | 0.635848 | 2.3:+27661954 | MS.gene071464:CDS |
| GGAAATCTTTCTTCACGACA+AGG | 0.636675 | 2.3:+27660616 | MS.gene071464:CDS |
| TCGAAGAATCAAACAAACGT+TGG | 0.641195 | 2.3:+27660772 | MS.gene071464:CDS |
| TCTTGTAGCATTGTCTACAA+AGG | 0.648885 | 2.3:+27661687 | MS.gene071464:CDS |
| GCACCATTACAAATGACCAA+AGG | 0.659343 | 2.3:+27661064 | MS.gene071464:CDS |
| ACCCACATACACCTTCACCT+CGG | 0.671696 | 2.3:-27661029 | None:intergenic |
| GGATCGTTCAACTTCTCACA+AGG | 0.677019 | 2.3:+27660637 | MS.gene071464:CDS |
| TTATGGTGTAAATGATCCGG+CGG | 0.678785 | 2.3:+27661374 | MS.gene071464:CDS |
| CCAAATAGATAGGGACTTGG+GGG | 0.700026 | 2.3:-27662488 | None:intergenic |
| AACGAGTCAACATTATCCTG+GGG | 0.713147 | 2.3:+27661943 | MS.gene071464:CDS |
| AATAGAGATGATGATCAATG+TGG | 0.721115 | 2.3:+27661713 | MS.gene071464:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATAATGAGACATTA+TGG | + | chr2.3:27660536-27660555 | MS.gene071464:CDS | 20.0% |
| !! | AGATAATCTATATACAATGA+AGG | + | chr2.3:27661200-27661219 | MS.gene071464:CDS | 20.0% |
| !! | ATCTAATTTACAAGAATGTA+AGG | + | chr2.3:27661272-27661291 | MS.gene071464:CDS | 20.0% |
| !! | ATTGTATATAGATTATCTTG+TGG | - | chr2.3:27661198-27661217 | None:intergenic | 20.0% |
| !! | CAAAAATAATGAGACATTAT+GGG | + | chr2.3:27660537-27660556 | MS.gene071464:CDS | 20.0% |
| !! | TGACAAATAACTTGAAAATT+TGG | - | chr2.3:27661156-27661175 | None:intergenic | 20.0% |
| !! | TTACATTCTTGTAAATTAGA+TGG | - | chr2.3:27661273-27661292 | None:intergenic | 20.0% |
| !! | TTCTTATACATTGAGAAAAA+AGG | + | chr2.3:27660823-27660842 | MS.gene071464:CDS | 20.0% |
| !!! | AAAGTTGATACTTATAGTTT+TGG | + | chr2.3:27662191-27662210 | MS.gene071464:CDS | 20.0% |
| !!! | AATTTTTTGCTGAAGAAAAA+GGG | + | chr2.3:27662261-27662280 | MS.gene071464:CDS | 20.0% |
| !!! | TACATGTTATTTGAATCAAT+CGG | - | chr2.3:27661120-27661139 | None:intergenic | 20.0% |
| ! | AATTGCTTGGCAAATTTATA+AGG | - | chr2.3:27660708-27660727 | None:intergenic | 25.0% |
| ! | ACTATAAGTATCAACTTTAG+CGG | - | chr2.3:27662189-27662208 | None:intergenic | 25.0% |
| ! | AGGATTTACCAAATATTGAT+TGG | + | chr2.3:27661220-27661239 | MS.gene071464:CDS | 25.0% |
| ! | ATAGATTCATAATCAGAATC+AGG | - | chr2.3:27661246-27661265 | None:intergenic | 25.0% |
| ! | ATTTCTAATGGTCTAATGAA+TGG | + | chr2.3:27660490-27660509 | MS.gene071464:CDS | 25.0% |
| ! | GTATATGAGTTAATGAGTAA+TGG | + | chr2.3:27661873-27661892 | MS.gene071464:CDS | 25.0% |
| ! | TATACATTGAGAAAAAAGGA+GGG | + | chr2.3:27660827-27660846 | MS.gene071464:CDS | 25.0% |
| ! | TATATCACAATGGATGATTT+GGG | - | chr2.3:27662009-27662028 | None:intergenic | 25.0% |
| ! | TTATACATTGAGAAAAAAGG+AGG | + | chr2.3:27660826-27660845 | MS.gene071464:CDS | 25.0% |
| ! | TTATATCACAATGGATGATT+TGG | - | chr2.3:27662010-27662029 | None:intergenic | 25.0% |
| ! | TTGATATTAAATGATTCTCG+TGG | + | chr2.3:27660406-27660425 | MS.gene071464:CDS | 25.0% |
| !! | AATGCAAGAATTTCAGATTT+TGG | + | chr2.3:27662062-27662081 | MS.gene071464:CDS | 25.0% |
| !! | AGAGCAACTATTAATTTTGA+TGG | + | chr2.3:27660907-27660926 | MS.gene071464:CDS | 25.0% |
| !! | ATTGTGATTTCAGTTCTTTT+GGG | + | chr2.3:27661483-27661502 | MS.gene071464:CDS | 25.0% |
| !! | CATAACTTTAGAGAAGAATT+GGG | + | chr2.3:27661657-27661676 | MS.gene071464:CDS | 25.0% |
| !!! | AAAAAGGGATTTTAACTGAT+TGG | + | chr2.3:27662276-27662295 | MS.gene071464:CDS | 25.0% |
| !!! | AAAAGGGATTTTAACTGATT+GGG | + | chr2.3:27662277-27662296 | MS.gene071464:CDS | 25.0% |
| !!! | GAATTTTTTGCTGAAGAAAA+AGG | + | chr2.3:27662260-27662279 | MS.gene071464:CDS | 25.0% |
| !!! | TCATCTAGAAGTATATTTTG+TGG | - | chr2.3:27662035-27662054 | None:intergenic | 25.0% |
| !!! | TTTGTCATTTTAACTTTGCT+TGG | + | chr2.3:27661516-27661535 | MS.gene071464:CDS | 25.0% |
| !!! | TTTTAGCTTTAAGGAAATTG+TGG | + | chr2.3:27661626-27661645 | MS.gene071464:CDS | 25.0% |
| AATAGAGATGATGATCAATG+TGG | + | chr2.3:27661713-27661732 | MS.gene071464:CDS | 30.0% | |
| AATATCAATCTTGATCCCTT+AGG | - | chr2.3:27660394-27660413 | None:intergenic | 30.0% | |
| ACATCAGGTACAATTTCTAA+TGG | + | chr2.3:27660478-27660497 | MS.gene071464:CDS | 30.0% | |
| AGTTTGTCATGATAGCTATT+TGG | + | chr2.3:27662384-27662403 | MS.gene071464:CDS | 30.0% | |
| ATACATTGAGAAAAAAGGAG+GGG | + | chr2.3:27660828-27660847 | MS.gene071464:CDS | 30.0% | |
| ATCTTATGGTGTAAATGATC+CGG | + | chr2.3:27661371-27661390 | MS.gene071464:CDS | 30.0% | |
| ATTAAATGATTCTCGTGGTT+TGG | + | chr2.3:27660411-27660430 | MS.gene071464:CDS | 30.0% | |
| GAAGAAAGATCATGATACTT+TGG | + | chr2.3:27661458-27661477 | MS.gene071464:CDS | 30.0% | |
| GATTCAAATAACATGTATGC+TGG | + | chr2.3:27661123-27661142 | MS.gene071464:CDS | 30.0% | |
| GTTTAAACTTCATCTACAAG+AGG | + | chr2.3:27660663-27660682 | MS.gene071464:CDS | 30.0% | |
| TAAATTCCTTATCACTATCC+TGG | - | chr2.3:27661764-27661783 | None:intergenic | 30.0% | |
| TCATTTACACCATAAGATAG+TGG | - | chr2.3:27661369-27661388 | None:intergenic | 30.0% | |
| TTCAACTCCATTACTTGATT+CGG | - | chr2.3:27660595-27660614 | None:intergenic | 30.0% | |
| TTTCTATCAGCAATCCAAAT+GGG | + | chr2.3:27660857-27660876 | MS.gene071464:CDS | 30.0% | |
| ! | AATCAAGTAATGGAGTTGAA+TGG | + | chr2.3:27660595-27660614 | MS.gene071464:CDS | 30.0% |
| ! | ATTAGTACCGAATCAAGTAA+TGG | + | chr2.3:27660585-27660604 | MS.gene071464:CDS | 30.0% |
| ! | ATTGTCAACAACACTTTTGT+TGG | - | chr2.3:27661595-27661614 | None:intergenic | 30.0% |
| ! | CATTGTGATTTCAGTTCTTT+TGG | + | chr2.3:27661482-27661501 | MS.gene071464:CDS | 30.0% |
| ! | GAATGCAAACATATGTTTTC+TGG | - | chr2.3:27661003-27661022 | None:intergenic | 30.0% |
| ! | GCATAACTTTAGAGAAGAAT+TGG | + | chr2.3:27661656-27661675 | MS.gene071464:CDS | 30.0% |
| ! | TTTTCTATCAGCAATCCAAA+TGG | + | chr2.3:27660856-27660875 | MS.gene071464:CDS | 30.0% |
| !! | ATCTTTAGGGTAAAATGCAA+TGG | - | chr2.3:27660941-27660960 | None:intergenic | 30.0% |
| !! | TACTACTTTTGATCTTCTTG+AGG | - | chr2.3:27661569-27661588 | None:intergenic | 30.0% |
| !! | TGTTAGAGATCATTTGTTGT+AGG | + | chr2.3:27662222-27662241 | MS.gene071464:CDS | 30.0% |
| !! | TTTCAAGTTATTTGTCAAGC+AGG | + | chr2.3:27661159-27661178 | MS.gene071464:CDS | 30.0% |
| !! | TTTGTGGCTTTATATCACAA+TGG | - | chr2.3:27662019-27662038 | None:intergenic | 30.0% |
| !!! | GTTTTGGTTCATTTTGATGA+AGG | + | chr2.3:27661321-27661340 | MS.gene071464:CDS | 30.0% |
| !!! | TGCTTGGTGCAATATTTTTT+GGG | + | chr2.3:27661532-27661551 | MS.gene071464:CDS | 30.0% |
| !!! | TTGCTTGGTGCAATATTTTT+TGG | + | chr2.3:27661531-27661550 | MS.gene071464:CDS | 30.0% |
| AAACTTCATCTACAAGAGGA+TGG | + | chr2.3:27660667-27660686 | MS.gene071464:CDS | 35.0% | |
| AACCAAATAGATAGGGACTT+GGG | - | chr2.3:27662493-27662512 | None:intergenic | 35.0% | |
| AACTTCATCTACAAGAGGAT+GGG | + | chr2.3:27660668-27660687 | MS.gene071464:CDS | 35.0% | |
| AAGAAGCTTCCACTATCTTA+TGG | + | chr2.3:27661357-27661376 | MS.gene071464:CDS | 35.0% | |
| AAGACTGAAATGAGTGTGAT+AGG | + | chr2.3:27661783-27661802 | MS.gene071464:CDS | 35.0% | |
| AAGTTATTTGTCAAGCAGGT+GGG | + | chr2.3:27661163-27661182 | MS.gene071464:CDS | 35.0% | |
| AATGGTCTAATGAATGGTGA+TGG | + | chr2.3:27660496-27660515 | MS.gene071464:CDS | 35.0% | |
| AGAAAAGCTCATTTGGAAGT+TGG | - | chr2.3:27660300-27660319 | None:intergenic | 35.0% | |
| ATCTTTCTTCTCTTCTGACA+AGG | - | chr2.3:27661448-27661467 | None:intergenic | 35.0% | |
| ATTCTTCGAATCACCACTAA+TGG | - | chr2.3:27660761-27660780 | None:intergenic | 35.0% | |
| CAAGATTCCTATGATGAGTT+TGG | - | chr2.3:27661809-27661828 | None:intergenic | 35.0% | |
| CGTTTGATATTTGACGAATC+AGG | + | chr2.3:27660799-27660818 | MS.gene071464:CDS | 35.0% | |
| GAATCAGGCCAATCAATATT+TGG | - | chr2.3:27661231-27661250 | None:intergenic | 35.0% | |
| GTATCAACTTTAGCGGTTAT+TGG | - | chr2.3:27662182-27662201 | None:intergenic | 35.0% | |
| TACAAGATGATGCCATCATT+TGG | + | chr2.3:27660344-27660363 | MS.gene071464:CDS | 35.0% | |
| TCAACCCATTAAAACCAGAT+TGG | + | chr2.3:27661916-27661935 | MS.gene071464:CDS | 35.0% | |
| TCCATAACTCTAAACCTTGA+GGG | - | chr2.3:27660447-27660466 | None:intergenic | 35.0% | |
| TCCATTTGCATACCAAATGA+TGG | - | chr2.3:27660359-27660378 | None:intergenic | 35.0% | |
| TCGAAGAATCAAACAAACGT+TGG | + | chr2.3:27660772-27660791 | MS.gene071464:CDS | 35.0% | |
| TCTTCTCGAAAAAGATAACG+AGG | + | chr2.3:27662334-27662353 | MS.gene071464:CDS | 35.0% | |
| TCTTGTAGCATTGTCTACAA+AGG | + | chr2.3:27661687-27661706 | MS.gene071464:CDS | 35.0% | |
| TGCAAAACCTTCTTCATTGT+TGG | - | chr2.3:27662437-27662456 | None:intergenic | 35.0% | |
| TTCAAGAAGATCCTTCTCTT+AGG | + | chr2.3:27662411-27662430 | MS.gene071464:CDS | 35.0% | |
| TTGATCTTCTTGAGGTTGTA+GGG | - | chr2.3:27661561-27661580 | None:intergenic | 35.0% | |
| TTGGATCAAGGTGTAATTGT+TGG | + | chr2.3:27660202-27660221 | MS.gene071464:CDS | 35.0% | |
| TTTAGAGAAGAATTGGGAAG+AGG | + | chr2.3:27661663-27661682 | MS.gene071464:CDS | 35.0% | |
| TTTGATCTTCTTGAGGTTGT+AGG | - | chr2.3:27661562-27661581 | None:intergenic | 35.0% | |
| ! | AAGGTTTTGCAGATGTTAGA+AGG | + | chr2.3:27662446-27662465 | MS.gene071464:CDS | 35.0% |
| ! | ATAGAAATACCTTTTACCGC+CGG | - | chr2.3:27661393-27661412 | None:intergenic | 35.0% |
| ! | CATTTTACCCTAAAGATCCA+AGG | + | chr2.3:27660944-27660963 | MS.gene071464:CDS | 35.0% |
| ! | GCAAGATTGCTTATGTGTTT+TGG | + | chr2.3:27661305-27661324 | MS.gene071464:CDS | 35.0% |
| !!! | GGTTCCAATCTGGTTTTAAT+GGG | - | chr2.3:27661923-27661942 | None:intergenic | 35.0% |
| !!! | TGGTTCCAATCTGGTTTTAA+TGG | - | chr2.3:27661924-27661943 | None:intergenic | 35.0% |
| AACGAGTCAACATTATCCTG+GGG | + | chr2.3:27661943-27661962 | MS.gene071464:CDS | 40.0% | |
| AATCAAAGCCACACTGAAAC+TGG | + | chr2.3:27662107-27662126 | MS.gene071464:CDS | 40.0% | |
| ACCAAATAGATAGGGACTTG+GGG | - | chr2.3:27662492-27662511 | None:intergenic | 40.0% | |
| ACTGGAATTAGAGGAACCAA+AGG | + | chr2.3:27662125-27662144 | MS.gene071464:CDS | 40.0% | |
| ATCCAAGGAGAGAACAAAGT+TGG | + | chr2.3:27660959-27660978 | MS.gene071464:CDS | 40.0% | |
| CAACGAGTCAACATTATCCT+GGG | + | chr2.3:27661942-27661961 | MS.gene071464:CDS | 40.0% | |
| CAAGTTATTTGTCAAGCAGG+TGG | + | chr2.3:27661162-27661181 | MS.gene071464:CDS | 40.0% | |
| CAATCGGAGAATATTCGTCT+GGG | - | chr2.3:27661104-27661123 | None:intergenic | 40.0% | |
| CACACTGAAACTGGAATTAG+AGG | + | chr2.3:27662116-27662135 | MS.gene071464:CDS | 40.0% | |
| CGTTGCAATATCCAAGAAGA+CGG | - | chr2.3:27661833-27661852 | None:intergenic | 40.0% | |
| CTCCATAACTCTAAACCTTG+AGG | - | chr2.3:27660448-27660467 | None:intergenic | 40.0% | |
| CTCTAATTCCAGTTTCAGTG+TGG | - | chr2.3:27662118-27662137 | None:intergenic | 40.0% | |
| CTGGAATTAGAGGAACCAAA+GGG | + | chr2.3:27662126-27662145 | MS.gene071464:CDS | 40.0% | |
| CTTCTTGGATATTGCAACGA+AGG | + | chr2.3:27661834-27661853 | MS.gene071464:CDS | 40.0% | |
| GAACCAAATAGATAGGGACT+TGG | - | chr2.3:27662494-27662513 | None:intergenic | 40.0% | |
| GCACCATTACAAATGACCAA+AGG | + | chr2.3:27661064-27661083 | MS.gene071464:CDS | 40.0% | |
| GCCATCATTTGGTATGCAAA+TGG | + | chr2.3:27660355-27660374 | MS.gene071464:CDS | 40.0% | |
| GGAAATCTTTCTTCACGACA+AGG | + | chr2.3:27660616-27660635 | MS.gene071464:CDS | 40.0% | |
| GGATCGTAACTGTAATTGCT+TGG | - | chr2.3:27660721-27660740 | None:intergenic | 40.0% | |
| GTTCTCTCCTTGGATCTTTA+GGG | - | chr2.3:27660954-27660973 | None:intergenic | 40.0% | |
| TACGCTTCTATGACCATTAG+TGG | + | chr2.3:27660745-27660764 | MS.gene071464:CDS | 40.0% | |
| TCAATCGGAGAATATTCGTC+TGG | - | chr2.3:27661105-27661124 | None:intergenic | 40.0% | |
| TCCAAGGAGAGAACAAAGTT+GGG | + | chr2.3:27660960-27660979 | MS.gene071464:CDS | 40.0% | |
| TCTTAGGCCAACAATGAAGA+AGG | + | chr2.3:27662427-27662446 | MS.gene071464:CDS | 40.0% | |
| TGATAGGCCAAACTCATCAT+AGG | + | chr2.3:27661799-27661818 | MS.gene071464:CDS | 40.0% | |
| TGATCTTCTTGAGGTTGTAG+GGG | - | chr2.3:27661560-27661579 | None:intergenic | 40.0% | |
| TGCTCTGCAGTAGAAATCAT+CGG | - | chr2.3:27660893-27660912 | None:intergenic | 40.0% | |
| TGGAGATCAGATTTCACATC+AGG | + | chr2.3:27660463-27660482 | MS.gene071464:CDS | 40.0% | |
| TGGCCTTTGGTCATTTGTAA+TGG | - | chr2.3:27661070-27661089 | None:intergenic | 40.0% | |
| TGTTCTCTCCTTGGATCTTT+AGG | - | chr2.3:27660955-27660974 | None:intergenic | 40.0% | |
| TGTTTGCATTCTACATTCCG+AGG | + | chr2.3:27661012-27661031 | MS.gene071464:CDS | 40.0% | |
| TTATGGTGTAAATGATCCGG+CGG | + | chr2.3:27661374-27661393 | MS.gene071464:CDS | 40.0% | |
| TTCGGTACTAATGTGTCAGT+AGG | - | chr2.3:27660577-27660596 | None:intergenic | 40.0% | |
| TTTCTTCTCTTCTGACAAGG+AGG | - | chr2.3:27661445-27661464 | None:intergenic | 40.0% | |
| ! | ACCCTCAAGGTTTAGAGTTA+TGG | + | chr2.3:27660443-27660462 | MS.gene071464:CDS | 40.0% |
| ! | ATGGTCATAGAAGCGTAGTA+AGG | - | chr2.3:27660742-27660761 | None:intergenic | 40.0% |
| ! | TCCAAATGAGCTTTTCTTGC+TGG | + | chr2.3:27660303-27660322 | MS.gene071464:CDS | 40.0% |
| ! | TTCATTGTTGGCCTAAGAGA+AGG | - | chr2.3:27662425-27662444 | None:intergenic | 40.0% |
| !! | AGCTTTTCTTGCTGGCTATA+TGG | + | chr2.3:27660311-27660330 | MS.gene071464:CDS | 40.0% |
| !! | ATGTTGCACCAGATTGGTTT+AGG | + | chr2.3:27662150-27662169 | MS.gene071464:CDS | 40.0% |
| !! | TTCAGTTCTTTTGGGAAGCT+CGG | + | chr2.3:27661491-27661510 | MS.gene071464:CDS | 40.0% |
| !!! | CTTGCGCAGTTTTAGCTTTA+AGG | + | chr2.3:27661617-27661636 | MS.gene071464:CDS | 40.0% |
| AATCTTGATCCCTTAGGAGC+AGG | - | chr2.3:27660388-27660407 | None:intergenic | 45.0% | |
| ACCCAACTTTGTTCTCTCCT+TGG | - | chr2.3:27660964-27660983 | None:intergenic | 45.0% | |
| AGGAATCTTGTCCGTCTTCT+TGG | + | chr2.3:27661819-27661838 | MS.gene071464:CDS | 45.0% | |
| ATCTGGTGCAACATACCCTT+TGG | - | chr2.3:27662144-27662163 | None:intergenic | 45.0% | |
| ATCTTGATCCCTTAGGAGCA+GGG | - | chr2.3:27660387-27660406 | None:intergenic | 45.0% | |
| ATTATCCTGGGGATTGCAAG+AGG | + | chr2.3:27661954-27661973 | MS.gene071464:CDS | 45.0% | |
| CATTCTACATTCCGAGGTGA+AGG | + | chr2.3:27661018-27661037 | MS.gene071464:CDS | 45.0% | |
| CCAAATAGATAGGGACTTGG+GGG | - | chr2.3:27662491-27662510 | None:intergenic | 45.0% | |
| CCAACGAGTCAACATTATCC+TGG | + | chr2.3:27661941-27661960 | MS.gene071464:CDS | 45.0% | |
| CGTTCAACTTCTCACAAGGA+AGG | + | chr2.3:27660641-27660660 | MS.gene071464:CDS | 45.0% | |
| GAAACTAGACAAGCTGATCC+AGG | + | chr2.3:27661743-27661762 | MS.gene071464:CDS | 45.0% | |
| GCCAGCAAGAAAAGCTCATT+TGG | - | chr2.3:27660307-27660326 | None:intergenic | 45.0% | |
| GCTGATCCAGGATAGTGATA+AGG | + | chr2.3:27661755-27661774 | MS.gene071464:CDS | 45.0% | |
| GGATCGTTCAACTTCTCACA+AGG | + | chr2.3:27660637-27660656 | MS.gene071464:CDS | 45.0% | |
| GTAAATGATCCGGCGGTAAA+AGG | + | chr2.3:27661381-27661400 | MS.gene071464:CDS | 45.0% | |
| TAGCAACGACATGATGTGCT+TGG | + | chr2.3:27662358-27662377 | MS.gene071464:CDS | 45.0% | |
| TCGGTTGAGAATGACCCATT+TGG | - | chr2.3:27660874-27660893 | None:intergenic | 45.0% | |
| TGTCAAGCAGGTGGGAATTT+GGG | + | chr2.3:27661171-27661190 | MS.gene071464:CDS | 45.0% | |
| TTGTCAAGCAGGTGGGAATT+TGG | + | chr2.3:27661170-27661189 | MS.gene071464:CDS | 45.0% | |
| ! | AAGGGTATGTTGCACCAGAT+TGG | + | chr2.3:27662144-27662163 | MS.gene071464:CDS | 45.0% |
| ! | CGAAGGACAACATCGCATTT+TGG | + | chr2.3:27661851-27661870 | MS.gene071464:CDS | 45.0% |
| ! | GCTTCGGGAGATTTTGCATT+TGG | + | chr2.3:27660268-27660287 | MS.gene071464:CDS | 45.0% |
| ! | GTTGGTGAGTCACTTATTGC+TGG | + | chr2.3:27660220-27660239 | MS.gene071464:CDS | 45.0% |
| !! | AGGTCTTGTTTACTTGCACG+AGG | + | chr2.3:27661974-27661993 | MS.gene071464:CDS | 45.0% |
| !! | CCAGGATAATGTTGACTCGT+TGG | - | chr2.3:27661944-27661963 | None:intergenic | 45.0% |
| !! | GGTCTTGTTTACTTGCACGA+GGG | + | chr2.3:27661975-27661994 | MS.gene071464:CDS | 45.0% |
| !! | GTCTTGTTTACTTGCACGAG+GGG | + | chr2.3:27661976-27661995 | MS.gene071464:CDS | 45.0% |
| !! | TTGACTCGTTGGTTCCAATC+TGG | - | chr2.3:27661933-27661952 | None:intergenic | 45.0% |
| ACCCACATACACCTTCACCT+CGG | - | chr2.3:27661032-27661051 | None:intergenic | 50.0% | |
| CCCCCAAGTCCCTATCTATT+TGG | + | chr2.3:27662488-27662507 | MS.gene071464:CDS | 50.0% | |
| GAGTCACTTATTGCTGGCAG+TGG | + | chr2.3:27660226-27660245 | MS.gene071464:CDS | 50.0% | |
| GGTGCACTCCTAAACCAATC+TGG | - | chr2.3:27662161-27662180 | None:intergenic | 50.0% | |
| TCGTCTGGGCAGGTACAATT+TGG | - | chr2.3:27661090-27661109 | None:intergenic | 50.0% | |
| ! | GGCAGGTACAATTTGGCCTT+TGG | - | chr2.3:27661083-27661102 | None:intergenic | 50.0% |
| ! | TCCGAGGTGAAGGTGTATGT+GGG | + | chr2.3:27661028-27661047 | MS.gene071464:CDS | 50.0% |
| ! | TTCCGAGGTGAAGGTGTATG+TGG | + | chr2.3:27661027-27661046 | MS.gene071464:CDS | 50.0% |
| ! | TTGGTGCTCACTAACCCTCA+AGG | + | chr2.3:27660430-27660449 | MS.gene071464:CDS | 50.0% |
| !! | AGCTCATTGGCTCTCTGCTT+CGG | + | chr2.3:27660252-27660271 | MS.gene071464:CDS | 50.0% |
| CAAGACCTCTTGCAATCCCC+AGG | - | chr2.3:27661962-27661981 | None:intergenic | 55.0% | |
| CGGAGAATATTCGTCTGGGC+AGG | - | chr2.3:27661100-27661119 | None:intergenic | 55.0% | |
| GGAGACAACCCTGCTCCTAA+GGG | + | chr2.3:27660376-27660395 | MS.gene071464:CDS | 55.0% | |
| TGGAGACAACCCTGCTCCTA+AGG | + | chr2.3:27660375-27660394 | MS.gene071464:CDS | 55.0% | |
| !! | GCTCATTGGCTCTCTGCTTC+GGG | + | chr2.3:27660253-27660272 | MS.gene071464:CDS | 55.0% |
| CTGGCAGTGGCACAGCTCAT+TGG | + | chr2.3:27660239-27660258 | MS.gene071464:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 27660192 | 27662514 | 27660192 | ID=MS.gene071464 |
| chr2.3 | mRNA | 27660192 | 27662514 | 27660192 | ID=MS.gene071464.t1;Parent=MS.gene071464 |
| chr2.3 | exon | 27660192 | 27662514 | 27660192 | ID=MS.gene071464.t1.exon1;Parent=MS.gene071464.t1 |
| chr2.3 | CDS | 27660192 | 27662514 | 27660192 | ID=cds.MS.gene071464.t1;Parent=MS.gene071464.t1 |
| Gene Sequence |
| Protein sequence |
