Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072078.t1 | XP_003592925.2 | 94.2 | 591 | 33 | 1 | 1 | 590 | 1 | 591 | 4.00E-255 | 890.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072078.t1 | Q9FT54 | 37.5 | 96 | 58 | 1 | 201 | 294 | 101 | 196 | 6.5e-12 | 73.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072078.t1 | G7IN90 | 94.2 | 591 | 33 | 1 | 1 | 590 | 1 | 591 | 2.9e-255 | 890.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene072078 | 0.816105 | 6.56E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene072078 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene072078 | 0.85982 | 3.17E-63 | -1.69E-46 |
| MS.gene054004 | MS.gene072078 | 0.824526 | 7.70E-54 | -1.69E-46 |
| MS.gene054005 | MS.gene072078 | 0.838171 | 3.37E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene072078 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene072078 | 0.808589 | 2.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072078.t1 | MTR_2g005820 | 95.286 | 594 | 21 | 2 | 1 | 590 | 1 | 591 | 0.0 | 1046 |
| MS.gene072078.t1 | MTR_8g070660 | 41.053 | 95 | 54 | 1 | 201 | 293 | 100 | 194 | 8.33e-16 | 79.7 |
| MS.gene072078.t1 | MTR_8g070660 | 41.053 | 95 | 54 | 1 | 201 | 293 | 100 | 194 | 1.59e-15 | 77.4 |
| MS.gene072078.t1 | MTR_4g079650 | 38.298 | 94 | 57 | 1 | 201 | 294 | 662 | 754 | 1.18e-13 | 74.7 |
| MS.gene072078.t1 | MTR_4g079650 | 38.298 | 94 | 57 | 1 | 201 | 294 | 662 | 754 | 1.81e-13 | 74.3 |
| MS.gene072078.t1 | MTR_4g079650 | 38.298 | 94 | 57 | 1 | 201 | 294 | 662 | 754 | 2.08e-13 | 73.9 |
| MS.gene072078.t1 | MTR_6g033375 | 36.842 | 95 | 58 | 1 | 201 | 293 | 75 | 169 | 1.57e-12 | 69.3 |
| MS.gene072078.t1 | MTR_2g091135 | 38.298 | 94 | 57 | 1 | 201 | 294 | 314 | 406 | 1.06e-11 | 68.2 |
| MS.gene072078.t1 | MTR_2g091135 | 38.298 | 94 | 57 | 1 | 201 | 294 | 314 | 406 | 1.08e-11 | 68.2 |
| MS.gene072078.t1 | MTR_4g092880 | 44.000 | 75 | 41 | 1 | 201 | 275 | 155 | 228 | 1.20e-11 | 67.0 |
| MS.gene072078.t1 | MTR_2g018270 | 36.559 | 93 | 58 | 1 | 201 | 293 | 86 | 177 | 1.37e-11 | 67.4 |
| MS.gene072078.t1 | MTR_2g091130 | 38.298 | 94 | 57 | 1 | 201 | 294 | 303 | 395 | 1.49e-11 | 67.8 |
| MS.gene072078.t1 | MTR_4g092880 | 32.168 | 143 | 75 | 4 | 137 | 275 | 104 | 228 | 1.78e-11 | 67.0 |
| MS.gene072078.t1 | MTR_5g069490 | 47.692 | 65 | 32 | 1 | 211 | 273 | 115 | 179 | 6.83e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072078.t1 | AT1G58025 | 42.857 | 637 | 250 | 22 | 1 | 589 | 1 | 571 | 2.02e-105 | 329 |
| MS.gene072078.t1 | AT1G58025 | 42.857 | 637 | 250 | 22 | 1 | 589 | 1 | 571 | 2.02e-105 | 329 |
| MS.gene072078.t1 | AT1G58025 | 42.857 | 637 | 251 | 22 | 1 | 589 | 1 | 572 | 2.31e-105 | 329 |
| MS.gene072078.t1 | AT1G58025 | 42.857 | 637 | 251 | 22 | 1 | 589 | 1 | 572 | 2.31e-105 | 329 |
| MS.gene072078.t1 | AT1G58025 | 42.857 | 637 | 251 | 22 | 1 | 589 | 1 | 572 | 2.31e-105 | 329 |
| MS.gene072078.t1 | AT1G58025 | 42.368 | 642 | 253 | 22 | 1 | 590 | 1 | 577 | 2.28e-103 | 324 |
| MS.gene072078.t1 | AT3G52280 | 37.500 | 96 | 58 | 1 | 201 | 294 | 101 | 196 | 4.42e-15 | 77.8 |
| MS.gene072078.t1 | AT3G52280 | 37.500 | 96 | 58 | 1 | 201 | 294 | 118 | 213 | 8.04e-15 | 77.0 |
| MS.gene072078.t1 | AT2G34900 | 31.183 | 93 | 63 | 1 | 201 | 293 | 7 | 98 | 7.39e-12 | 66.6 |
| MS.gene072078.t1 | AT2G34900 | 31.183 | 93 | 63 | 1 | 201 | 293 | 117 | 208 | 8.80e-12 | 67.8 |
Find 161 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTGCAAAAGGAAATTT+TGG | 0.068453 | 2.4:-76377454 | MS.gene072078:CDS |
| CACATAAACAATCATGTTTA+TGG | 0.132600 | 2.4:+76377524 | None:intergenic |
| ATTGATACACCAATGGATTT+TGG | 0.145425 | 2.4:-76378696 | MS.gene072078:CDS |
| ACAGAAGATATTGCACTTTC+TGG | 0.158951 | 2.4:-76378068 | MS.gene072078:CDS |
| TAACGCGTCCAACGGATTTA+AGG | 0.159721 | 2.4:+76379768 | None:intergenic |
| CAATTCGTGCTTATTATATC+TGG | 0.169623 | 2.4:+76379433 | None:intergenic |
| TCATTGCCTGATCTGAAATT+TGG | 0.188018 | 2.4:-76379596 | MS.gene072078:CDS |
| GATTAAGTCTTCAAAGGTTT+TGG | 0.200901 | 2.4:-76379543 | MS.gene072078:CDS |
| CGCGGCTATTGGGTCGTTAA+TGG | 0.210579 | 2.4:-76376118 | MS.gene072078:CDS |
| TTTGTAAGGTTTACAGTTAC+AGG | 0.233781 | 2.4:+76379956 | None:intergenic |
| ACAGGAATTCCCAGAGCTTC+TGG | 0.240922 | 2.4:+76379225 | None:intergenic |
| CCTTGTGCTTCTTCTGTTGC+TGG | 0.252049 | 2.4:+76376397 | None:intergenic |
| TCCTCCTCTTCCGCATCCTC+TGG | 0.253559 | 2.4:+76376597 | None:intergenic |
| AGTTCAATTCACGCGGCTAT+TGG | 0.256200 | 2.4:-76376129 | MS.gene072078:CDS |
| GTCTCACCTGTGCTCCCTTT+TGG | 0.264699 | 2.4:+76378483 | None:intergenic |
| ATGAAGTACTGGGCCGCTGC+TGG | 0.283193 | 2.4:-76378522 | MS.gene072078:CDS |
| TATAAGGAAGGTAATGAAAA+TGG | 0.284179 | 2.4:-76379280 | MS.gene072078:CDS |
| CCCAGAGCTTCTGGATTAAC+AGG | 0.285043 | 2.4:+76379234 | None:intergenic |
| GACGCATGGATGAAACTTTA+AGG | 0.295666 | 2.4:-76376518 | MS.gene072078:CDS |
| AGGATTTATGTTGGCAAGAT+TGG | 0.296597 | 2.4:+76379802 | None:intergenic |
| CGAATTGGATACCTCCTTAA+TGG | 0.303209 | 2.4:-76379417 | MS.gene072078:intron |
| AGGAAGAGATTGAAATGAAC+AGG | 0.315177 | 2.4:-76376548 | MS.gene072078:CDS |
| TCGGCAAAGGCTTGCTTGTC+TGG | 0.317832 | 2.4:+76379507 | None:intergenic |
| CTGTTATAAGTATAACAATA+AGG | 0.325860 | 2.4:-76378589 | MS.gene072078:CDS |
| CTTCAACTTGTTCATTTGTA+AGG | 0.335827 | 2.4:+76379942 | None:intergenic |
| GTTCAATTCACGCGGCTATT+GGG | 0.340292 | 2.4:-76376128 | MS.gene072078:CDS |
| ATAACGATGTGCGGTACATT+TGG | 0.356948 | 2.4:-76378617 | MS.gene072078:CDS |
| TAAATCCGTTGGACGCGTTA+AGG | 0.371120 | 2.4:-76379765 | MS.gene072078:CDS |
| AGAAGAACTTTATGAAGTAC+TGG | 0.383247 | 2.4:-76378533 | MS.gene072078:CDS |
| CAGATATAATAAGCACGAAT+TGG | 0.384681 | 2.4:-76379432 | MS.gene072078:CDS |
| AGGAGGAGGAAGATGGAGAG+GGG | 0.388799 | 2.4:-76376578 | MS.gene072078:CDS |
| TCCTGTTAATCCAGAAGCTC+TGG | 0.395506 | 2.4:-76379235 | MS.gene072078:CDS |
| TAACGATGTGCGGTACATTT+GGG | 0.405692 | 2.4:-76378616 | MS.gene072078:CDS |
| GGAGGAGGAGGAAGATGGAG+AGG | 0.408387 | 2.4:-76376580 | MS.gene072078:CDS |
| AGGTTTACAGTTACAGGCTT+TGG | 0.411526 | 2.4:+76379962 | None:intergenic |
| TTTCCAGTCCATGTTGCTGC+TGG | 0.413771 | 2.4:+76379660 | None:intergenic |
| GGAGGAGGAAGATGGAGAGG+GGG | 0.414341 | 2.4:-76376577 | MS.gene072078:CDS |
| CCTCCTCTTCCGCATCCTCT+GGG | 0.423748 | 2.4:+76376598 | None:intergenic |
| TGGCCCAGAGGATGCGGAAG+AGG | 0.429207 | 2.4:-76376601 | MS.gene072078:CDS |
| TAAAGGAGAGGTGACGAAGA+TGG | 0.431952 | 2.4:-76376709 | MS.gene072078:CDS |
| GTCAAACACAGATGAATTGC+TGG | 0.439773 | 2.4:-76376757 | MS.gene072078:CDS |
| GAATGACAAGTATATGAATT+CGG | 0.440504 | 2.4:-76378649 | MS.gene072078:CDS |
| GCACTTTCTGGTGATGGAAA+AGG | 0.444895 | 2.4:-76378056 | MS.gene072078:CDS |
| GAAGAGGAGGAGGAGGAAGA+TGG | 0.448405 | 2.4:-76376585 | MS.gene072078:CDS |
| AGAGGATGCGGAAGAGGAGG+AGG | 0.454000 | 2.4:-76376595 | MS.gene072078:CDS |
| TGAAGTACTGGGCCGCTGCT+GGG | 0.460482 | 2.4:-76378521 | MS.gene072078:CDS |
| TGAATAATTTCAGAGGAAAT+CGG | 0.462279 | 2.4:+76379488 | None:intergenic |
| GGAGATGTTGATGATGATAA+AGG | 0.463074 | 2.4:-76376726 | MS.gene072078:CDS |
| GAGGAGGAGGAAGATGGAGA+GGG | 0.463131 | 2.4:-76376579 | MS.gene072078:CDS |
| CATAAAGATTAAGTCTTCAA+AGG | 0.463907 | 2.4:-76379549 | MS.gene072078:CDS |
| AATTCGTGCTTATTATATCT+GGG | 0.465954 | 2.4:+76379434 | None:intergenic |
| GAAGCACCAAATTTCAGATC+AGG | 0.466519 | 2.4:+76379590 | None:intergenic |
| CTTCCGCATCCTCTGGGCCA+TGG | 0.468488 | 2.4:+76376604 | None:intergenic |
| GATATTGCACTTTCTGGTGA+TGG | 0.468563 | 2.4:-76378062 | MS.gene072078:CDS |
| TGGAACCTTGGCAGAGGAAT+CGG | 0.475229 | 2.4:-76376490 | MS.gene072078:CDS |
| GTCAATGAAGTTGATGATGA+TGG | 0.475846 | 2.4:-76376642 | MS.gene072078:CDS |
| TGGATTAACAGGAACATTGA+AGG | 0.484715 | 2.4:+76379245 | None:intergenic |
| TGTTATAAGTATAACAATAA+GGG | 0.492668 | 2.4:-76378588 | MS.gene072078:CDS |
| GGATGCGGAAGAGGAGGAGG+AGG | 0.494837 | 2.4:-76376592 | MS.gene072078:CDS |
| AAATTATTCACCCGAAAGAA+AGG | 0.502938 | 2.4:-76379475 | MS.gene072078:CDS |
| CGCAAACGTGGTCATAAGAA+AGG | 0.505508 | 2.4:-76379989 | MS.gene072078:CDS |
| GAGAATGACCGAATTGCAAA+AGG | 0.506571 | 2.4:-76377463 | MS.gene072078:CDS |
| GGTTCCATCCTTAAATCCGT+TGG | 0.508502 | 2.4:-76379776 | MS.gene072078:CDS |
| TAAAGCGCCGTAGGAGGGAG+CGG | 0.510674 | 2.4:-76377489 | MS.gene072078:CDS |
| AAAGTTCCAACACACCATTA+AGG | 0.514193 | 2.4:+76379403 | None:intergenic |
| CAACAAGAAGGACAAGCTGC+AGG | 0.514447 | 2.4:-76376423 | MS.gene072078:CDS |
| TTATACAGTGAACAACCAAA+AGG | 0.516612 | 2.4:-76378498 | MS.gene072078:CDS |
| ATTGGAATGTTGATCGGTAC+CGG | 0.516797 | 2.4:+76379820 | None:intergenic |
| CCCATGCTTTCAAGTTTGTG+TGG | 0.520002 | 2.4:-76376231 | MS.gene072078:CDS |
| AACTTCCGATTCCTCTGCCA+AGG | 0.520528 | 2.4:+76376485 | None:intergenic |
| GAACCATGGCCCAGAGGATG+CGG | 0.521717 | 2.4:-76376607 | MS.gene072078:CDS |
| TTTAAGGCATGGTGGAACCT+TGG | 0.523016 | 2.4:-76376502 | MS.gene072078:CDS |
| TCTTGTACAGATTATAAGGA+AGG | 0.525545 | 2.4:-76379292 | MS.gene072078:intron |
| CCCAGAGGATGCGGAAGAGG+AGG | 0.527506 | 2.4:-76376598 | MS.gene072078:CDS |
| GGTGCTTCATATAAGAAAGC+TGG | 0.528292 | 2.4:-76379575 | MS.gene072078:CDS |
| GGTGATGGAAAAGGAGGAAA+GGG | 0.529277 | 2.4:-76378047 | MS.gene072078:CDS |
| TAGCCAGCAGCAACATGGAC+TGG | 0.530294 | 2.4:-76379663 | MS.gene072078:CDS |
| GGGTCTGCTAGCAATAATCA+TGG | 0.531485 | 2.4:-76377433 | MS.gene072078:CDS |
| CCACACAAACTTGAAAGCAT+GGG | 0.534397 | 2.4:+76376231 | None:intergenic |
| TGAAGGTGCATCAGATGAGT+TGG | 0.534517 | 2.4:+76379706 | None:intergenic |
| TCCACACAAACTTGAAAGCA+TGG | 0.537766 | 2.4:+76376230 | None:intergenic |
| GATTTAAGGATGGAACCATC+AGG | 0.538308 | 2.4:+76379782 | None:intergenic |
| GGAAGATAACAACTCTGGAA+TGG | 0.538777 | 2.4:-76379864 | MS.gene072078:CDS |
| ACTTCATGCCTCCCATCAGA+AGG | 0.540698 | 2.4:+76376663 | None:intergenic |
| TCTCCTCCCGCTCCCTCCTA+CGG | 0.542414 | 2.4:+76377482 | None:intergenic |
| GGATTAACAGGAACATTGAA+GGG | 0.542504 | 2.4:+76379246 | None:intergenic |
| AGTAAGGAAGATAACAACTC+TGG | 0.542767 | 2.4:-76379869 | MS.gene072078:CDS |
| GCGCCGTAGGAGGGAGCGGG+AGG | 0.545563 | 2.4:-76377485 | MS.gene072078:CDS |
| CGATATCATTGATACACCAA+TGG | 0.545653 | 2.4:-76378703 | MS.gene072078:CDS |
| TTGGCAGAGGAATCGGAAGT+TGG | 0.545674 | 2.4:-76376483 | MS.gene072078:CDS |
| CTTCACCTTAACGCGTCCAA+CGG | 0.545923 | 2.4:+76379760 | None:intergenic |
| GCCTCCCATCAGAAGGGCTA+CGG | 0.547402 | 2.4:+76376670 | None:intergenic |
| TGGTGATGGAAAAGGAGGAA+AGG | 0.548971 | 2.4:-76378048 | MS.gene072078:CDS |
| AAAGCGCCGTAGGAGGGAGC+GGG | 0.551025 | 2.4:-76377488 | MS.gene072078:CDS |
| CATATAGTTCCAAAATCCAT+TGG | 0.551577 | 2.4:+76378687 | None:intergenic |
| GTGTGCTAAAGCGCCGTAGG+AGG | 0.553382 | 2.4:-76377495 | MS.gene072078:CDS |
| GCTCAAGACATCGAAAATGT+TGG | 0.554015 | 2.4:-76379738 | MS.gene072078:CDS |
| GATGAATTGCTGGGTACTGA+TGG | 0.558606 | 2.4:-76376747 | MS.gene072078:CDS |
| GATGGAAAAGGAGGAAAGGG+TGG | 0.559973 | 2.4:-76378044 | MS.gene072078:CDS |
| GAACAACCAAAAGGGAGCAC+AGG | 0.561861 | 2.4:-76378489 | MS.gene072078:intron |
| CCTGTTAATCCAGAAGCTCT+GGG | 0.561922 | 2.4:-76379234 | MS.gene072078:CDS |
| TCCATGCTTGTAGAGAGTCC+CGG | 0.563514 | 2.4:-76376795 | MS.gene072078:CDS |
| TTTATATTCATCATGAAAAG+CGG | 0.566483 | 2.4:+76376452 | None:intergenic |
| TGATCGGTACCGGTGGAAGA+AGG | 0.567122 | 2.4:+76379830 | None:intergenic |
| ATTTCAGAGGAAATCGGCAA+AGG | 0.569246 | 2.4:+76379494 | None:intergenic |
| GGAACCATCAGGATTTATGT+TGG | 0.571200 | 2.4:+76379793 | None:intergenic |
| TGACAACGAATCTTCCCCAC+CGG | 0.572344 | 2.4:+76376776 | None:intergenic |
| ACCGGGACTCTCTACAAGCA+TGG | 0.574620 | 2.4:+76376794 | None:intergenic |
| TATACAGTGAACAACCAAAA+GGG | 0.575875 | 2.4:-76378497 | MS.gene072078:CDS |
| CTTTGGTGTATTAGCGAGTG+CGG | 0.579470 | 2.4:+76376168 | None:intergenic |
| GAAGGTGCATCAGATGAGTT+GGG | 0.580712 | 2.4:+76379707 | None:intergenic |
| AACAAGAAGGACAAGCTGCA+GGG | 0.581920 | 2.4:-76376422 | MS.gene072078:CDS |
| CACACAAACTTGAAAGCATG+GGG | 0.582062 | 2.4:+76376232 | None:intergenic |
| GTTGACACACCTTCTTCCAC+CGG | 0.582069 | 2.4:-76379839 | MS.gene072078:CDS |
| TATAAAACAACTCAACAAGA+AGG | 0.582554 | 2.4:-76376435 | MS.gene072078:CDS |
| AGTTGATGATGATGGGATGG+AGG | 0.582716 | 2.4:-76376634 | MS.gene072078:CDS |
| AAGAACCGTAGCCCTTCTGA+TGG | 0.583532 | 2.4:-76376675 | MS.gene072078:CDS |
| CTTTCTGGTGATGGAAAAGG+AGG | 0.587565 | 2.4:-76378053 | MS.gene072078:CDS |
| TCAATGAAGTTGATGATGAT+GGG | 0.591513 | 2.4:-76376641 | MS.gene072078:CDS |
| TGTGCTAAAGCGCCGTAGGA+GGG | 0.597259 | 2.4:-76377494 | MS.gene072078:CDS |
| TTTCGGGTGAATAATTTCAG+AGG | 0.598623 | 2.4:+76379481 | None:intergenic |
| AAGAGTAGCCAGCAGCAACA+TGG | 0.600252 | 2.4:-76379668 | MS.gene072078:CDS |
| GGAAGAGATTGAAATGAACA+GGG | 0.601358 | 2.4:-76376547 | MS.gene072078:CDS |
| CTTGCCAACATAAATCCTGA+TGG | 0.603062 | 2.4:-76379797 | MS.gene072078:CDS |
| TGAAGTTGATGATGATGGGA+TGG | 0.604434 | 2.4:-76376637 | MS.gene072078:CDS |
| TTTGTGTGCTAAAGCGCCGT+AGG | 0.607509 | 2.4:-76377498 | MS.gene072078:CDS |
| GGCAAGATTGGAATGTTGAT+CGG | 0.609659 | 2.4:+76379814 | None:intergenic |
| ACAAGAAGGACAAGCTGCAG+GGG | 0.612194 | 2.4:-76376421 | MS.gene072078:CDS |
| TCAAACACAGATGAATTGCT+GGG | 0.612920 | 2.4:-76376756 | MS.gene072078:CDS |
| ATGGATGAAACTTTAAGGCA+TGG | 0.614031 | 2.4:-76376513 | MS.gene072078:CDS |
| TTATTATATCTGGGATTAAG+CGG | 0.615194 | 2.4:+76379443 | None:intergenic |
| TGCTTGTAGAGAGTCCCGGT+GGG | 0.615999 | 2.4:-76376791 | MS.gene072078:CDS |
| GCATGGTGGAACCTTGGCAG+AGG | 0.619280 | 2.4:-76376496 | MS.gene072078:CDS |
| ACTACCAATATCAAAAGCAG+AGG | 0.625733 | 2.4:+76379889 | None:intergenic |
| AGAACCGTAGCCCTTCTGAT+GGG | 0.628962 | 2.4:-76376674 | MS.gene072078:CDS |
| TTATATCTGGGATTAAGCGG+AGG | 0.629122 | 2.4:+76379446 | None:intergenic |
| CTTCATGCCTCCCATCAGAA+GGG | 0.633181 | 2.4:+76376664 | None:intergenic |
| ACCGTAGCCCTTCTGATGGG+AGG | 0.633613 | 2.4:-76376671 | MS.gene072078:CDS |
| GAACAGGGAGAAGAGACGCA+TGG | 0.635472 | 2.4:-76376532 | MS.gene072078:CDS |
| GACAACGAATCTTCCCCACC+GGG | 0.635501 | 2.4:+76376777 | None:intergenic |
| TGGTAGAGACTTCAAGCAAG+AGG | 0.637034 | 2.4:-76377413 | MS.gene072078:intron |
| GAAGAACTTTATGAAGTACT+GGG | 0.638761 | 2.4:-76378532 | MS.gene072078:CDS |
| CAACATGGACTGGAAAGACA+TGG | 0.641197 | 2.4:-76379653 | MS.gene072078:CDS |
| TTATCAGTATCACTCTGTGA+AGG | 0.642263 | 2.4:+76379689 | None:intergenic |
| AATAGTCAGTCTGTGTGGAG+TGG | 0.643016 | 2.4:-76376192 | MS.gene072078:CDS |
| GCGTCCAACGGATTTAAGGA+TGG | 0.649948 | 2.4:+76379772 | None:intergenic |
| CAATAAGGGTGACTATATCG+TGG | 0.652140 | 2.4:-76378574 | MS.gene072078:CDS |
| TAGAAGATGAAGCGCAAACG+TGG | 0.657445 | 2.4:-76380001 | None:intergenic |
| GTTCCAACACACCATTAAGG+AGG | 0.672143 | 2.4:+76379406 | None:intergenic |
| TGTTGATGATGATAAAGGAG+AGG | 0.673385 | 2.4:-76376721 | MS.gene072078:CDS |
| GCTTGTAGAGAGTCCCGGTG+GGG | 0.674070 | 2.4:-76376790 | MS.gene072078:CDS |
| TTCACTGTATAACCCAGCAG+CGG | 0.686321 | 2.4:+76378509 | None:intergenic |
| ATGCTTGTAGAGAGTCCCGG+TGG | 0.687009 | 2.4:-76376792 | MS.gene072078:CDS |
| GGAAGAGAACCATGGCCCAG+AGG | 0.689105 | 2.4:-76376613 | MS.gene072078:CDS |
| GGAATGTTGATCGGTACCGG+TGG | 0.689108 | 2.4:+76379823 | None:intergenic |
| CCAGCAACAGAAGAAGCACA+AGG | 0.690190 | 2.4:-76376397 | MS.gene072078:intron |
| GATGAAACTTTAAGGCATGG+TGG | 0.691320 | 2.4:-76376510 | MS.gene072078:CDS |
| TGACAAGTATATGAATTCGG+AGG | 0.697902 | 2.4:-76378646 | MS.gene072078:CDS |
| TCTCACTAGTTCAATTCACG+CGG | 0.705120 | 2.4:-76376136 | MS.gene072078:CDS |
| AGGATGTCTATAACGATGTG+CGG | 0.713282 | 2.4:-76378626 | MS.gene072078:CDS |
| GGGATGGAGGAAGAGAACCA+TGG | 0.740806 | 2.4:-76376621 | MS.gene072078:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGACATTAATATATTAT+CGG | + | chr2.4:76378490-76378509 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACAATATGCAT+TGG | - | chr2.4:76379065-76379084 | MS.gene072078:intron | 15.0% |
| !! | ATAAATCTCAAATAAGATAA+AGG | - | chr2.4:76378365-76378384 | MS.gene072078:intron | 15.0% |
| !! | ATTAAAAAAAAATCTCTTGT+TGG | - | chr2.4:76378218-76378237 | MS.gene072078:intron | 15.0% |
| !! | TAAAAATATTACTTTAGCAA+TGG | + | chr2.4:76378166-76378185 | None:intergenic | 15.0% |
| !! | TAAATCTCAAATAAGATAAA+GGG | - | chr2.4:76378366-76378385 | MS.gene072078:intron | 15.0% |
| !! | TGTTATAAGTATAACAATAA+GGG | - | chr2.4:76377520-76377539 | MS.gene072078:CDS | 15.0% |
| !!! | TGCTAAAGTAATATTTTTAA+TGG | - | chr2.4:76378167-76378186 | MS.gene072078:intron | 15.0% |
| !!! | TTATTTGAGATTTATAAACA+AGG | + | chr2.4:76378360-76378379 | None:intergenic | 15.0% |
| !! | AAGAAAACAAAATACTGAAA+AGG | + | chr2.4:76377042-76377061 | None:intergenic | 20.0% |
| !! | ACTAATGTAACGAAAAAATT+TGG | - | chr2.4:76377839-76377858 | MS.gene072078:intron | 20.0% |
| !! | ACTTAAATGTTAATACTTAC+AGG | + | chr2.4:76376904-76376923 | None:intergenic | 20.0% |
| !! | CTGTTATAAGTATAACAATA+AGG | - | chr2.4:76377519-76377538 | MS.gene072078:CDS | 20.0% |
| !! | GAAATTCATTAGTAGATATA+TGG | - | chr2.4:76379253-76379272 | MS.gene072078:CDS | 20.0% |
| !! | TAAAAGAAAAATAGACTATC+AGG | + | chr2.4:76378337-76378356 | None:intergenic | 20.0% |
| !! | TATATCAAATTTATGGAAAC+AGG | + | chr2.4:76378312-76378331 | None:intergenic | 20.0% |
| !! | TTAGTATTTCTCTTTATATG+TGG | + | chr2.4:76377824-76377843 | None:intergenic | 20.0% |
| !! | TTTATATTCATCATGAAAAG+CGG | + | chr2.4:76379659-76379678 | None:intergenic | 20.0% |
| !!! | CATGTAACTAAACATTATTT+TGG | + | chr2.4:76379114-76379133 | None:intergenic | 20.0% |
| !!! | GATTATGACTAGTTAAAAAT+AGG | + | chr2.4:76377796-76377815 | None:intergenic | 20.0% |
| !!! | TTTTAGTTCATTTGTAAACT+TGG | - | chr2.4:76378452-76378471 | MS.gene072078:intron | 20.0% |
| ! | AACGAAAAAATTTGGAAAGA+CGG | - | chr2.4:76377847-76377866 | MS.gene072078:intron | 25.0% |
| ! | AAGCATAAGAAAAAAAAGCA+TGG | - | chr2.4:76378094-76378113 | MS.gene072078:intron | 25.0% |
| ! | AATTCGTGCTTATTATATCT+GGG | + | chr2.4:76376677-76376696 | None:intergenic | 25.0% |
| ! | AGAATAGAATATCACTGAAT+TGG | - | chr2.4:76378900-76378919 | MS.gene072078:intron | 25.0% |
| ! | AGATTCTTGATTGAAATGAT+CGG | - | chr2.4:76378812-76378831 | MS.gene072078:intron | 25.0% |
| ! | ATCTATTAGTGAACTTGTAT+TGG | + | chr2.4:76378275-76378294 | None:intergenic | 25.0% |
| ! | CACATAAACAATCATGTTTA+TGG | + | chr2.4:76378587-76378606 | None:intergenic | 25.0% |
| ! | CATAAAGATTAAGTCTTCAA+AGG | - | chr2.4:76376559-76376578 | MS.gene072078:CDS | 25.0% |
| ! | CATTAATATATTATCGGCAT+AGG | + | chr2.4:76378484-76378503 | None:intergenic | 25.0% |
| ! | CTAGTTAAAAATAGGAAAAG+TGG | + | chr2.4:76377788-76377807 | None:intergenic | 25.0% |
| ! | GAATGACAAGTATATGAATT+CGG | - | chr2.4:76377459-76377478 | MS.gene072078:CDS | 25.0% |
| ! | GCATGTAAACATTTCAAAAA+AGG | + | chr2.4:76378538-76378557 | None:intergenic | 25.0% |
| ! | TATAAAACAACTCAACAAGA+AGG | - | chr2.4:76379673-76379692 | MS.gene072078:CDS | 25.0% |
| ! | TATAAGGAAGGTAATGAAAA+TGG | - | chr2.4:76376828-76376847 | MS.gene072078:intron | 25.0% |
| ! | TCAGGCATATATCAAATTTA+TGG | + | chr2.4:76378319-76378338 | None:intergenic | 25.0% |
| ! | TCATTATGAAACTTCATCAA+TGG | + | chr2.4:76377667-76377686 | None:intergenic | 25.0% |
| ! | TGAATAATTTCAGAGGAAAT+CGG | + | chr2.4:76376623-76376642 | None:intergenic | 25.0% |
| !! | AAACATTGGAGTCAATTTTA+GGG | - | chr2.4:76378765-76378784 | MS.gene072078:intron | 25.0% |
| !! | AGCATAAGAAAAAAAAGCAT+GGG | - | chr2.4:76378095-76378114 | MS.gene072078:intron | 25.0% |
| !! | AGCTTTTTGATGTTTATCTT+GGG | + | chr2.4:76379827-76379846 | None:intergenic | 25.0% |
| !! | ATTAAGTCTTCAAAGGTTTT+GGG | - | chr2.4:76376566-76376585 | MS.gene072078:CDS | 25.0% |
| !! | CAAAATTTCCTTTTGCAATT+CGG | + | chr2.4:76378656-76378675 | None:intergenic | 25.0% |
| !! | GAATTGCAAAAGGAAATTTT+GGG | - | chr2.4:76378655-76378674 | MS.gene072078:CDS | 25.0% |
| !! | GGTAATGAGTAATTTTCTTT+TGG | - | chr2.4:76376777-76376796 | MS.gene072078:CDS | 25.0% |
| !! | GTTTTCTTGTACAGATTATA+AGG | - | chr2.4:76376812-76376831 | MS.gene072078:intron | 25.0% |
| !! | TAGCTTTTTGATGTTTATCT+TGG | + | chr2.4:76379828-76379847 | None:intergenic | 25.0% |
| !! | TATACTTGTCATTCTTTTCA+AGG | + | chr2.4:76377453-76377472 | None:intergenic | 25.0% |
| !! | TGTACTTTATCTTGTTTCAA+AGG | - | chr2.4:76379288-76379307 | MS.gene072078:intron | 25.0% |
| !! | TTATTATATCTGGGATTAAG+CGG | + | chr2.4:76376668-76376687 | None:intergenic | 25.0% |
| !! | TTCATTTATCTTTTTGGATC+AGG | - | chr2.4:76378004-76378023 | MS.gene072078:intron | 25.0% |
| !!! | ACATTTAAGTAACTTTTTCG+TGG | - | chr2.4:76376914-76376933 | MS.gene072078:intron | 25.0% |
| !!! | TAACTTTTGCTTTTCATACA+TGG | + | chr2.4:76377128-76377147 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCTAAACTTGAG+TGG | - | chr2.4:76377724-76377743 | MS.gene072078:intron | 25.0% |
| AAAAGAATAGATGATCGACT+GGG | + | chr2.4:76377077-76377096 | None:intergenic | 30.0% | |
| AAAAGGTTGAAAACAGGTTT+AGG | + | chr2.4:76377025-76377044 | None:intergenic | 30.0% | |
| AAATAGATCCCTTGAAACAT+TGG | - | chr2.4:76378751-76378770 | MS.gene072078:intron | 30.0% | |
| AAATTATTCACCCGAAAGAA+AGG | - | chr2.4:76376633-76376652 | MS.gene072078:CDS | 30.0% | |
| AGAAGAACTTTATGAAGTAC+TGG | - | chr2.4:76377575-76377594 | MS.gene072078:intron | 30.0% | |
| ATACTGAAAAGGTTGAAAAC+AGG | + | chr2.4:76377031-76377050 | None:intergenic | 30.0% | |
| CAATTCGTGCTTATTATATC+TGG | + | chr2.4:76376678-76376697 | None:intergenic | 30.0% | |
| CAGATATAATAAGCACGAAT+TGG | - | chr2.4:76376676-76376695 | MS.gene072078:CDS | 30.0% | |
| CATATAGTTCCAAAATCCAT+TGG | + | chr2.4:76377424-76377443 | None:intergenic | 30.0% | |
| CTAGGACAAAAGAAAACTAA+AGG | + | chr2.4:76376742-76376761 | None:intergenic | 30.0% | |
| GAGTAGTATCTTACATGAAA+TGG | + | chr2.4:76377957-76377976 | None:intergenic | 30.0% | |
| TATACAGTGAACAACCAAAA+GGG | - | chr2.4:76377611-76377630 | MS.gene072078:intron | 30.0% | |
| TCTTGTACAGATTATAAGGA+AGG | - | chr2.4:76376816-76376835 | MS.gene072078:intron | 30.0% | |
| TTAGTGAATAAGAAGAACCA+GGG | + | chr2.4:76378872-76378891 | None:intergenic | 30.0% | |
| TTATACAGTGAACAACCAAA+AGG | - | chr2.4:76377610-76377629 | MS.gene072078:intron | 30.0% | |
| TTTAGTGAATAAGAAGAACC+AGG | + | chr2.4:76378873-76378892 | None:intergenic | 30.0% | |
| TTTGTAAGGTTTACAGTTAC+AGG | + | chr2.4:76376155-76376174 | None:intergenic | 30.0% | |
| ! | AAATTGACTCCAATGTTTCA+AGG | + | chr2.4:76378763-76378782 | None:intergenic | 30.0% |
| ! | AATTGACTCCAATGTTTCAA+GGG | + | chr2.4:76378762-76378781 | None:intergenic | 30.0% |
| ! | CGAATTGCAAAAGGAAATTT+TGG | - | chr2.4:76378654-76378673 | MS.gene072078:CDS | 30.0% |
| ! | CTTCAACTTGTTCATTTGTA+AGG | + | chr2.4:76376169-76376188 | None:intergenic | 30.0% |
| ! | CTTTTGTCCTAGCATTATAA+TGG | - | chr2.4:76376750-76376769 | MS.gene072078:CDS | 30.0% |
| ! | GAAACATTGGAGTCAATTTT+AGG | - | chr2.4:76378764-76378783 | MS.gene072078:intron | 30.0% |
| ! | GAAGAACTTTATGAAGTACT+GGG | - | chr2.4:76377576-76377595 | MS.gene072078:intron | 30.0% |
| ! | GATTAAGTCTTCAAAGGTTT+TGG | - | chr2.4:76376565-76376584 | MS.gene072078:CDS | 30.0% |
| ! | GCATATATCATGTTTCTATG+TGG | - | chr2.4:76378787-76378806 | MS.gene072078:intron | 30.0% |
| ! | GCTTTTTGATGTTTATCTTG+GGG | + | chr2.4:76379826-76379845 | None:intergenic | 30.0% |
| ! | TAATGGTTCTATGTGTTTGT+AGG | - | chr2.4:76379798-76379817 | MS.gene072078:CDS | 30.0% |
| ! | TTTTAGACAACTTATGCTGA+AGG | + | chr2.4:76378426-76378445 | None:intergenic | 30.0% |
| !! | ATTGATACACCAATGGATTT+TGG | - | chr2.4:76377412-76377431 | MS.gene072078:intron | 30.0% |
| !! | TCAATGAAGTTGATGATGAT+GGG | - | chr2.4:76379467-76379486 | MS.gene072078:CDS | 30.0% |
| !! | TCCTAGCATTATAATGGATT+CGG | - | chr2.4:76376756-76376775 | MS.gene072078:CDS | 30.0% |
| !! | TGCTTTTGATATTGGTAGTA+AGG | - | chr2.4:76376223-76376242 | MS.gene072078:CDS | 30.0% |
| !! | TTTTGCTTTTCATACATGGT+GGG | + | chr2.4:76377124-76377143 | None:intergenic | 30.0% |
| !!! | CCTGGTTTATTTTGTATCTT+CGG | - | chr2.4:76377890-76377909 | MS.gene072078:intron | 30.0% |
| !!! | GTTTATTTTGTATCTTCGGA+GGG | - | chr2.4:76377894-76377913 | MS.gene072078:intron | 30.0% |
| !!! | TTCTACTTTTTCATGTATCC+TGG | - | chr2.4:76377872-76377891 | MS.gene072078:intron | 30.0% |
| !!! | TTTATTTTGTATCTTCGGAG+GGG | - | chr2.4:76377895-76377914 | MS.gene072078:intron | 30.0% |
| AAAGTTCCAACACACCATTA+AGG | + | chr2.4:76376708-76376727 | None:intergenic | 35.0% | |
| ACAGAAGATATTGCACTTTC+TGG | - | chr2.4:76378040-76378059 | MS.gene072078:CDS | 35.0% | |
| ACCAACAAACCAATCAAAGT+GGG | + | chr2.4:76378950-76378969 | None:intergenic | 35.0% | |
| ACCGAATCCATTATAATGCT+AGG | + | chr2.4:76376760-76376779 | None:intergenic | 35.0% | |
| ACTACCAATATCAAAAGCAG+AGG | + | chr2.4:76376222-76376241 | None:intergenic | 35.0% | |
| AGGAAGAGATTGAAATGAAC+AGG | - | chr2.4:76379560-76379579 | MS.gene072078:CDS | 35.0% | |
| AGGATTTATGTTGGCAAGAT+TGG | + | chr2.4:76376309-76376328 | None:intergenic | 35.0% | |
| AGTAAGGAAGATAACAACTC+TGG | - | chr2.4:76376239-76376258 | MS.gene072078:CDS | 35.0% | |
| ATCTCTGCTTACTAAGAAAG+AGG | + | chr2.4:76377233-76377252 | None:intergenic | 35.0% | |
| ATGCAATTCCCAAAAGTCAA+AGG | + | chr2.4:76378401-76378420 | None:intergenic | 35.0% | |
| ATGCACACAATTTCTACAGA+AGG | + | chr2.4:76377187-76377206 | None:intergenic | 35.0% | |
| CAAAAGAATAGATGATCGAC+TGG | + | chr2.4:76377078-76377097 | None:intergenic | 35.0% | |
| CAATGATATCGAAATAGTCC+TGG | + | chr2.4:76377396-76377415 | None:intergenic | 35.0% | |
| CCGAAGATACAAAATAAACC+AGG | + | chr2.4:76377893-76377912 | None:intergenic | 35.0% | |
| CGATATCATTGATACACCAA+TGG | - | chr2.4:76377405-76377424 | MS.gene072078:intron | 35.0% | |
| GGAAGAGATTGAAATGAACA+GGG | - | chr2.4:76379561-76379580 | MS.gene072078:CDS | 35.0% | |
| GGATTAACAGGAACATTGAA+GGG | + | chr2.4:76376865-76376884 | None:intergenic | 35.0% | |
| TAGTGAATAAGAAGAACCAG+GGG | + | chr2.4:76378871-76378890 | None:intergenic | 35.0% | |
| TCAAACACAGATGAATTGCT+GGG | - | chr2.4:76379352-76379371 | MS.gene072078:intron | 35.0% | |
| TCAGAAGATCATGCAAAAGT+TGG | + | chr2.4:76377921-76377940 | None:intergenic | 35.0% | |
| TCATGATAAGAAACAAGAGC+AGG | + | chr2.4:76379235-76379254 | None:intergenic | 35.0% | |
| TCATGTAAGATACTACTCCA+TGG | - | chr2.4:76377959-76377978 | MS.gene072078:intron | 35.0% | |
| TCGTCATTCTTTGTGAAACT+TGG | - | chr2.4:76377296-76377315 | MS.gene072078:intron | 35.0% | |
| TGACAAGTATATGAATTCGG+AGG | - | chr2.4:76377462-76377481 | MS.gene072078:CDS | 35.0% | |
| TGGATTAACAGGAACATTGA+AGG | + | chr2.4:76376866-76376885 | None:intergenic | 35.0% | |
| TGTTCAATTTCTGTTGCCTT+CGG | - | chr2.4:76379150-76379169 | MS.gene072078:intron | 35.0% | |
| TGTTGCAGTATGGACTTTAA+TGG | - | chr2.4:76379781-76379800 | MS.gene072078:CDS | 35.0% | |
| TTATCAGTATCACTCTGTGA+AGG | + | chr2.4:76376422-76376441 | None:intergenic | 35.0% | |
| ! | ATGGTTTTCTGATATCGTTG+GGG | - | chr2.4:76377978-76377997 | MS.gene072078:intron | 35.0% |
| ! | CATCAATGGATTCTAGTACA+TGG | + | chr2.4:76377653-76377672 | None:intergenic | 35.0% |
| ! | CATGGTTTTCTGATATCGTT+GGG | - | chr2.4:76377977-76377996 | MS.gene072078:intron | 35.0% |
| ! | TAGTGAGAGCAGATTTTCTT+TGG | + | chr2.4:76379960-76379979 | None:intergenic | 35.0% |
| ! | TCATTGCCTGATCTGAAATT+TGG | - | chr2.4:76376512-76376531 | MS.gene072078:CDS | 35.0% |
| ! | TTTCGGGTGAATAATTTCAG+AGG | + | chr2.4:76376630-76376649 | None:intergenic | 35.0% |
| !! | AAAGAGAAGCCTTTGACTTT+TGG | - | chr2.4:76378389-76378408 | MS.gene072078:intron | 35.0% |
| !! | AAGAGAAGCCTTTGACTTTT+GGG | - | chr2.4:76378390-76378409 | MS.gene072078:intron | 35.0% |
| !! | ATGGATGAAACTTTAAGGCA+TGG | - | chr2.4:76379595-76379614 | MS.gene072078:CDS | 35.0% |
| !! | CACACAGACTGACTATTTTT+GGG | + | chr2.4:76379913-76379932 | None:intergenic | 35.0% |
| !! | CTTTTGCTTTTCATACATGG+TGG | + | chr2.4:76377125-76377144 | None:intergenic | 35.0% |
| !! | GAAACCTCTGCTTTTGATAT+TGG | - | chr2.4:76376215-76376234 | MS.gene072078:CDS | 35.0% |
| !! | GCATATTTGTTGTTGCAGTA+TGG | - | chr2.4:76379771-76379790 | MS.gene072078:CDS | 35.0% |
| !! | GGAGATGTTGATGATGATAA+AGG | - | chr2.4:76379382-76379401 | MS.gene072078:intron | 35.0% |
| !! | GTCAATGAAGTTGATGATGA+TGG | - | chr2.4:76379466-76379485 | MS.gene072078:CDS | 35.0% |
| !! | TGTTGATGATGATAAAGGAG+AGG | - | chr2.4:76379387-76379406 | MS.gene072078:intron | 35.0% |
| !! | TTTGATTGGTTTGTTGGTGT+TGG | - | chr2.4:76378952-76378971 | MS.gene072078:intron | 35.0% |
| !!! | ACACAGACTGACTATTTTTG+GGG | + | chr2.4:76379912-76379931 | None:intergenic | 35.0% |
| !!! | GGTTTATTTTGTATCTTCGG+AGG | - | chr2.4:76377893-76377912 | MS.gene072078:intron | 35.0% |
| !!! | TCAAGCAAGAGGTATTTTAG+TGG | - | chr2.4:76378706-76378725 | MS.gene072078:CDS | 35.0% |
| AAGAACCCTCATGTAATGTC+TGG | + | chr2.4:76379187-76379206 | None:intergenic | 40.0% | |
| AAGAATGACGATAGTCTCCA+TGG | + | chr2.4:76377287-76377306 | None:intergenic | 40.0% | |
| AGGATGTCTATAACGATGTG+CGG | - | chr2.4:76377482-76377501 | MS.gene072078:CDS | 40.0% | |
| AGGTTTACAGTTACAGGCTT+TGG | + | chr2.4:76376149-76376168 | None:intergenic | 40.0% | |
| ATAACGATGTGCGGTACATT+TGG | - | chr2.4:76377491-76377510 | MS.gene072078:CDS | 40.0% | |
| ATACCTCCTTAATGGTGTGT+TGG | - | chr2.4:76376699-76376718 | MS.gene072078:CDS | 40.0% | |
| ATTGGAATGTTGATCGGTAC+CGG | + | chr2.4:76376291-76376310 | None:intergenic | 40.0% | |
| ATTTCAGAGGAAATCGGCAA+AGG | + | chr2.4:76376617-76376636 | None:intergenic | 40.0% | |
| CAATAAGGGTGACTATATCG+TGG | - | chr2.4:76377534-76377553 | MS.gene072078:intron | 40.0% | |
| CACCAACAAACCAATCAAAG+TGG | + | chr2.4:76378951-76378970 | None:intergenic | 40.0% | |
| CAGGGGAAAAAACTCAAATC+AGG | + | chr2.4:76378854-76378873 | None:intergenic | 40.0% | |
| CCAAAAATAGTCAGTCTGTG+TGG | - | chr2.4:76379911-76379930 | MS.gene072078:CDS | 40.0% | |
| CCAACGATATCAGAAAACCA+TGG | + | chr2.4:76377979-76377998 | None:intergenic | 40.0% | |
| CCATGACATTTGTTCATCCA+TGG | - | chr2.4:76377267-76377286 | MS.gene072078:intron | 40.0% | |
| CCATGGATGAACAAATGTCA+TGG | + | chr2.4:76377270-76377289 | None:intergenic | 40.0% | |
| CGAATTGGATACCTCCTTAA+TGG | - | chr2.4:76376691-76376710 | MS.gene072078:CDS | 40.0% | |
| CTGATCCAGACATTACATGA+GGG | - | chr2.4:76379179-76379198 | MS.gene072078:intron | 40.0% | |
| CTTGCCAACATAAATCCTGA+TGG | - | chr2.4:76376311-76376330 | MS.gene072078:intron | 40.0% | |
| GAAGGCAACAGAAATTGAAC+AGG | + | chr2.4:76379151-76379170 | None:intergenic | 40.0% | |
| GACGCATGGATGAAACTTTA+AGG | - | chr2.4:76379590-76379609 | MS.gene072078:CDS | 40.0% | |
| GAGAATGACCGAATTGCAAA+AGG | - | chr2.4:76378645-76378664 | MS.gene072078:CDS | 40.0% | |
| GATTTAAGGATGGAACCATC+AGG | + | chr2.4:76376329-76376348 | None:intergenic | 40.0% | |
| GCTCAAGACATCGAAAATGT+TGG | - | chr2.4:76376370-76376389 | MS.gene072078:intron | 40.0% | |
| GGAACCATCAGGATTTATGT+TGG | + | chr2.4:76376318-76376337 | None:intergenic | 40.0% | |
| GGCAAGATTGGAATGTTGAT+CGG | + | chr2.4:76376297-76376316 | None:intergenic | 40.0% | |
| GGTGCTTCATATAAGAAAGC+TGG | - | chr2.4:76376533-76376552 | MS.gene072078:CDS | 40.0% | |
| GTCAAACACAGATGAATTGC+TGG | - | chr2.4:76379351-76379370 | MS.gene072078:intron | 40.0% | |
| GTGTGTTGGAACTTTCGTAT+TGG | - | chr2.4:76376713-76376732 | MS.gene072078:CDS | 40.0% | |
| TAACGATGTGCGGTACATTT+GGG | - | chr2.4:76377492-76377511 | MS.gene072078:CDS | 40.0% | |
| TCCACACAAACTTGAAAGCA+TGG | + | chr2.4:76379881-76379900 | None:intergenic | 40.0% | |
| TCTCACTAGTTCAATTCACG+CGG | - | chr2.4:76379972-76379991 | MS.gene072078:CDS | 40.0% | |
| TCTGATCCAGACATTACATG+AGG | - | chr2.4:76379178-76379197 | MS.gene072078:intron | 40.0% | |
| TTGTTGCAACCCACTTTGAT+TGG | - | chr2.4:76378938-76378957 | MS.gene072078:intron | 40.0% | |
| ! | ATAAAGTCTGAGACCTTGAG+AGG | + | chr2.4:76378999-76379018 | None:intergenic | 40.0% |
| ! | CACACAAACTTGAAAGCATG+GGG | + | chr2.4:76379879-76379898 | None:intergenic | 40.0% |
| ! | CCACACAAACTTGAAAGCAT+GGG | + | chr2.4:76379880-76379899 | None:intergenic | 40.0% |
| ! | CCACACAGACTGACTATTTT+TGG | + | chr2.4:76379914-76379933 | None:intergenic | 40.0% |
| ! | CCATGGTTTTCTGATATCGT+TGG | - | chr2.4:76377976-76377995 | MS.gene072078:intron | 40.0% |
| ! | GAAGCACCAAATTTCAGATC+AGG | + | chr2.4:76376521-76376540 | None:intergenic | 40.0% |
| ! | GATATTGCACTTTCTGGTGA+TGG | - | chr2.4:76378046-76378065 | MS.gene072078:CDS | 40.0% |
| ! | GGAAGATAACAACTCTGGAA+TGG | - | chr2.4:76376244-76376263 | MS.gene072078:CDS | 40.0% |
| ! | TGGTTTTCTGATATCGTTGG+GGG | - | chr2.4:76377979-76377998 | MS.gene072078:intron | 40.0% |
| ! | TTATATCTGGGATTAAGCGG+AGG | + | chr2.4:76376665-76376684 | None:intergenic | 40.0% |
| ! | TTTAGGACAGAAGTTGAGGT+AGG | + | chr2.4:76377008-76377027 | None:intergenic | 40.0% |
| !! | ACCCACTTTGATTGGTTTGT+TGG | - | chr2.4:76378946-76378965 | MS.gene072078:intron | 40.0% |
| !! | GATGAAACTTTAAGGCATGG+TGG | - | chr2.4:76379598-76379617 | MS.gene072078:CDS | 40.0% |
| !! | GGGGCGTTCATTTATCTTTT+TGG | - | chr2.4:76377998-76378017 | MS.gene072078:intron | 40.0% |
| !! | TGAAGTTGATGATGATGGGA+TGG | - | chr2.4:76379471-76379490 | MS.gene072078:CDS | 40.0% |
| !!! | CTGATTTGAGTTTTTTCCCC+TGG | - | chr2.4:76378852-76378871 | MS.gene072078:intron | 40.0% |
| AACAAGAAGGACAAGCTGCA+GGG | - | chr2.4:76379686-76379705 | MS.gene072078:CDS | 45.0% | |
| AATAGTCAGTCTGTGTGGAG+TGG | - | chr2.4:76379916-76379935 | MS.gene072078:CDS | 45.0% | |
| AGTTCAATTCACGCGGCTAT+TGG | - | chr2.4:76379979-76379998 | MS.gene072078:CDS | 45.0% | |
| CCAAAATAGCCCACCGAAAT+TGG | + | chr2.4:76379033-76379052 | None:intergenic | 45.0% | |
| CCTGTTAATCCAGAAGCTCT+GGG | - | chr2.4:76376874-76376893 | MS.gene072078:intron | 45.0% | |
| CGCAAACGTGGTCATAAGAA+AGG | - | chr2.4:76376119-76376138 | MS.gene072078:CDS | 45.0% | |
| GGGTCTGCTAGCAATAATCA+TGG | - | chr2.4:76378675-76378694 | MS.gene072078:CDS | 45.0% | |
| GGTTCCATCCTTAAATCCGT+TGG | - | chr2.4:76376332-76376351 | MS.gene072078:intron | 45.0% | |
| GTCTCAGACTTTATTCTCCC+CGG | - | chr2.4:76379005-76379024 | MS.gene072078:intron | 45.0% | |
| GTTCAATTCACGCGGCTATT+GGG | - | chr2.4:76379980-76379999 | MS.gene072078:CDS | 45.0% | |
| GTTCCAACACACCATTAAGG+AGG | + | chr2.4:76376705-76376724 | None:intergenic | 45.0% | |
| TAAAGGAGAGGTGACGAAGA+TGG | - | chr2.4:76379399-76379418 | MS.gene072078:intron | 45.0% | |
| TAAATCCGTTGGACGCGTTA+AGG | - | chr2.4:76376343-76376362 | MS.gene072078:intron | 45.0% | |
| TCCTGTTAATCCAGAAGCTC+TGG | - | chr2.4:76376873-76376892 | MS.gene072078:intron | 45.0% | |
| TCTAAACTTGAGTGGACCCT+TGG | - | chr2.4:76377732-76377751 | MS.gene072078:intron | 45.0% | |
| TGGTAGAGACTTCAAGCAAG+AGG | - | chr2.4:76378695-76378714 | MS.gene072078:CDS | 45.0% | |
| TTCACACGCTATCTTGAACC+AGG | - | chr2.4:76377375-76377394 | MS.gene072078:intron | 45.0% | |
| TTCACTGTATAACCCAGCAG+CGG | + | chr2.4:76377602-76377621 | None:intergenic | 45.0% | |
| ! | CAGGTTTAGGACAGAAGTTG+AGG | + | chr2.4:76377012-76377031 | None:intergenic | 45.0% |
| ! | CTTTGGTGTATTAGCGAGTG+CGG | + | chr2.4:76379943-76379962 | None:intergenic | 45.0% |
| ! | GAAGGTGCATCAGATGAGTT+GGG | + | chr2.4:76376404-76376423 | None:intergenic | 45.0% |
| ! | TAACGCGTCCAACGGATTTA+AGG | + | chr2.4:76376343-76376362 | None:intergenic | 45.0% |
| ! | TGAAGGTGCATCAGATGAGT+TGG | + | chr2.4:76376405-76376424 | None:intergenic | 45.0% |
| ! | TTTAAGGCATGGTGGAACCT+TGG | - | chr2.4:76379606-76379625 | MS.gene072078:CDS | 45.0% |
| !! | AGTTGATGATGATGGGATGG+AGG | - | chr2.4:76379474-76379493 | MS.gene072078:CDS | 45.0% |
| !! | CAACATGGACTGGAAAGACA+TGG | - | chr2.4:76376455-76376474 | MS.gene072078:CDS | 45.0% |
| !! | CCCATGCTTTCAAGTTTGTG+TGG | - | chr2.4:76379877-76379896 | MS.gene072078:CDS | 45.0% |
| !! | CTTTCTGGTGATGGAAAAGG+AGG | - | chr2.4:76378055-76378074 | MS.gene072078:CDS | 45.0% |
| !! | GAGGCGTTTTCCTTTCTTTC+GGG | + | chr2.4:76376646-76376665 | None:intergenic | 45.0% |
| !! | GATGAATTGCTGGGTACTGA+TGG | - | chr2.4:76379361-76379380 | MS.gene072078:intron | 45.0% |
| !! | GCACTTTCTGGTGATGGAAA+AGG | - | chr2.4:76378052-76378071 | MS.gene072078:CDS | 45.0% |
| !! | GGTGATGGAAAAGGAGGAAA+GGG | - | chr2.4:76378061-76378080 | MS.gene072078:CDS | 45.0% |
| !! | GGTTTGTTGGTGTTGGCTTA+TGG | - | chr2.4:76378959-76378978 | MS.gene072078:intron | 45.0% |
| !! | TGGTGATGGAAAAGGAGGAA+AGG | - | chr2.4:76378060-76378079 | MS.gene072078:CDS | 45.0% |
| !!! | CCAATTTCGGTGGGCTATTT+TGG | - | chr2.4:76379030-76379049 | MS.gene072078:intron | 45.0% |
| !!! | GGAGGCGTTTTCCTTTCTTT+CGG | + | chr2.4:76376647-76376666 | None:intergenic | 45.0% |
| !!! | TTTTTGGATCAGGCACTGAG+AGG | - | chr2.4:76378014-76378033 | MS.gene072078:CDS | 45.0% |
| AACTTCCGATTCCTCTGCCA+AGG | + | chr2.4:76379626-76379645 | None:intergenic | 50.0% | |
| AAGAACCGTAGCCCTTCTGA+TGG | - | chr2.4:76379433-76379452 | MS.gene072078:CDS | 50.0% | |
| AAGAGTAGCCAGCAGCAACA+TGG | - | chr2.4:76376440-76376459 | MS.gene072078:CDS | 50.0% | |
| ACAAGAAGGACAAGCTGCAG+GGG | - | chr2.4:76379687-76379706 | MS.gene072078:CDS | 50.0% | |
| ACAGGAATTCCCAGAGCTTC+TGG | + | chr2.4:76376886-76376905 | None:intergenic | 50.0% | |
| ACTTCATGCCTCCCATCAGA+AGG | + | chr2.4:76379448-76379467 | None:intergenic | 50.0% | |
| AGAACCGTAGCCCTTCTGAT+GGG | - | chr2.4:76379434-76379453 | MS.gene072078:CDS | 50.0% | |
| AGATGGAGAGGGGGAAAATG+AGG | - | chr2.4:76379540-76379559 | MS.gene072078:CDS | 50.0% | |
| AGCTTCCCAGATAGTCTCCA+AGG | + | chr2.4:76377752-76377771 | None:intergenic | 50.0% | |
| CAACAAGAAGGACAAGCTGC+AGG | - | chr2.4:76379685-76379704 | MS.gene072078:CDS | 50.0% | |
| CCCAGAGCTTCTGGATTAAC+AGG | + | chr2.4:76376877-76376896 | None:intergenic | 50.0% | |
| CCTTGTGCTTCTTCTGTTGC+TGG | + | chr2.4:76379714-76379733 | None:intergenic | 50.0% | |
| CTTCACCTTAACGCGTCCAA+CGG | + | chr2.4:76376351-76376370 | None:intergenic | 50.0% | |
| CTTCATGCCTCCCATCAGAA+GGG | + | chr2.4:76379447-76379466 | None:intergenic | 50.0% | |
| GATGGAAAAGGAGGAAAGGG+TGG | - | chr2.4:76378064-76378083 | MS.gene072078:CDS | 50.0% | |
| GCTTCCCAGATAGTCTCCAA+GGG | + | chr2.4:76377751-76377770 | None:intergenic | 50.0% | |
| GTTGACACACCTTCTTCCAC+CGG | - | chr2.4:76376269-76376288 | MS.gene072078:CDS | 50.0% | |
| TCCATGCTTGTAGAGAGTCC+CGG | - | chr2.4:76379313-76379332 | MS.gene072078:intron | 50.0% | |
| TCTGGATCAGATGTTGCCGA+AGG | + | chr2.4:76379169-76379188 | None:intergenic | 50.0% | |
| TGACAACGAATCTTCCCCAC+CGG | + | chr2.4:76379335-76379354 | None:intergenic | 50.0% | |
| TGGAACCTTGGCAGAGGAAT+CGG | - | chr2.4:76379618-76379637 | MS.gene072078:CDS | 50.0% | |
| TGGACCCTTGGAGACTATCT+GGG | - | chr2.4:76377744-76377763 | MS.gene072078:intron | 50.0% | |
| TTGGCAGAGGAATCGGAAGT+TGG | - | chr2.4:76379625-76379644 | MS.gene072078:CDS | 50.0% | |
| TTTCCAGTCCATGTTGCTGC+TGG | + | chr2.4:76376451-76376470 | None:intergenic | 50.0% | |
| ! | ATTCTCCCCGGTGCCAATTT+CGG | - | chr2.4:76379017-76379036 | MS.gene072078:intron | 50.0% |
| ! | CCAGCAACAGAAGAAGCACA+AGG | - | chr2.4:76379711-76379730 | MS.gene072078:CDS | 50.0% |
| ! | GAACAACCAAAAGGGAGCAC+AGG | - | chr2.4:76377619-76377638 | MS.gene072078:intron | 50.0% |
| ! | GCGTCCAACGGATTTAAGGA+TGG | + | chr2.4:76376339-76376358 | None:intergenic | 50.0% |
| ! | GGAAAAGTGGTTGCTTTGCC+AGG | + | chr2.4:76377775-76377794 | None:intergenic | 50.0% |
| !! | TTGGTGTTGGCTTATGGCCA+TGG | - | chr2.4:76378965-76378984 | MS.gene072078:intron | 50.0% |
| !! | TTTGTGTGCTAAAGCGCCGT+AGG | - | chr2.4:76378610-76378629 | MS.gene072078:CDS | 50.0% |
| ACCGGGACTCTCTACAAGCA+TGG | + | chr2.4:76379317-76379336 | None:intergenic | 55.0% | |
| AGGAGGAGGAAGATGGAGAG+GGG | - | chr2.4:76379530-76379549 | MS.gene072078:CDS | 55.0% | |
| ATGCTTGTAGAGAGTCCCGG+TGG | - | chr2.4:76379316-76379335 | MS.gene072078:intron | 55.0% | |
| CATGGAGTGTGCTCCTCTCA+AGG | - | chr2.4:76378983-76379002 | MS.gene072078:intron | 55.0% | |
| CGCGGCTATTGGGTCGTTAA+TGG | - | chr2.4:76379990-76380009 | MS.gene072078:CDS | 55.0% | |
| GAACAGGGAGAAGAGACGCA+TGG | - | chr2.4:76379576-76379595 | MS.gene072078:CDS | 55.0% | |
| GAAGAGGAGGAGGAGGAAGA+TGG | - | chr2.4:76379523-76379542 | MS.gene072078:CDS | 55.0% | |
| GACAACGAATCTTCCCCACC+GGG | + | chr2.4:76379334-76379353 | None:intergenic | 55.0% | |
| GAGACTATCTGGGAAGCTCC+TGG | - | chr2.4:76377754-76377773 | MS.gene072078:intron | 55.0% | |
| GAGGAGGAGGAAGATGGAGA+GGG | - | chr2.4:76379529-76379548 | MS.gene072078:CDS | 55.0% | |
| GGGATGGAGGAAGAGAACCA+TGG | - | chr2.4:76379487-76379506 | MS.gene072078:CDS | 55.0% | |
| GTGGACCCTTGGAGACTATC+TGG | - | chr2.4:76377743-76377762 | MS.gene072078:intron | 55.0% | |
| TAGCCAGCAGCAACATGGAC+TGG | - | chr2.4:76376445-76376464 | MS.gene072078:CDS | 55.0% | |
| TAGCCCACCGAAATTGGCAC+CGG | + | chr2.4:76379027-76379046 | None:intergenic | 55.0% | |
| TGCTTGTAGAGAGTCCCGGT+GGG | - | chr2.4:76379317-76379336 | MS.gene072078:intron | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+TGG | + | chr2.4:76378985-76379004 | None:intergenic | 55.0% |
| ! | GGAATGTTGATCGGTACCGG+TGG | + | chr2.4:76376288-76376307 | None:intergenic | 55.0% |
| ! | GTCTCACCTGTGCTCCCTTT+TGG | + | chr2.4:76377628-76377647 | None:intergenic | 55.0% |
| ! | TCGGCAAAGGCTTGCTTGTC+TGG | + | chr2.4:76376604-76376623 | None:intergenic | 55.0% |
| !! | TGATCGGTACCGGTGGAAGA+AGG | + | chr2.4:76376281-76376300 | None:intergenic | 55.0% |
| !! | TGTGCTAAAGCGCCGTAGGA+GGG | - | chr2.4:76378614-76378633 | MS.gene072078:CDS | 55.0% |
| ACCGTAGCCCTTCTGATGGG+AGG | - | chr2.4:76379437-76379456 | MS.gene072078:CDS | 60.0% | |
| AGAGGATGCGGAAGAGGAGG+AGG | - | chr2.4:76379513-76379532 | MS.gene072078:CDS | 60.0% | |
| AGCCCACCGAAATTGGCACC+GGG | + | chr2.4:76379026-76379045 | None:intergenic | 60.0% | |
| CCTCCTCTTCCGCATCCTCT+GGG | + | chr2.4:76379513-76379532 | None:intergenic | 60.0% | |
| GAACCATGGCCCAGAGGATG+CGG | - | chr2.4:76379501-76379520 | MS.gene072078:CDS | 60.0% | |
| GCCTCCCATCAGAAGGGCTA+CGG | + | chr2.4:76379441-76379460 | None:intergenic | 60.0% | |
| GCTTGTAGAGAGTCCCGGTG+GGG | - | chr2.4:76379318-76379337 | MS.gene072078:intron | 60.0% | |
| GGAAGAGAACCATGGCCCAG+AGG | - | chr2.4:76379495-76379514 | MS.gene072078:CDS | 60.0% | |
| GGAGGAGGAAGATGGAGAGG+GGG | - | chr2.4:76379531-76379550 | MS.gene072078:CDS | 60.0% | |
| GGAGGAGGAGGAAGATGGAG+AGG | - | chr2.4:76379528-76379547 | MS.gene072078:CDS | 60.0% | |
| TCCTCCTCTTCCGCATCCTC+TGG | + | chr2.4:76379514-76379533 | None:intergenic | 60.0% | |
| ! | GCATGGTGGAACCTTGGCAG+AGG | - | chr2.4:76379612-76379631 | MS.gene072078:CDS | 60.0% |
| ! | TCCCCGGTGCCAATTTCGGT+GGG | - | chr2.4:76379021-76379040 | MS.gene072078:intron | 60.0% |
| !! | ATGAAGTACTGGGCCGCTGC+TGG | - | chr2.4:76377586-76377605 | MS.gene072078:intron | 60.0% |
| !! | GTGTGCTAAAGCGCCGTAGG+AGG | - | chr2.4:76378613-76378632 | MS.gene072078:CDS | 60.0% |
| !! | TAAAGCGCCGTAGGAGGGAG+CGG | - | chr2.4:76378619-76378638 | MS.gene072078:CDS | 60.0% |
| !! | TGAAGTACTGGGCCGCTGCT+GGG | - | chr2.4:76377587-76377606 | MS.gene072078:intron | 60.0% |
| CCCAGAGGATGCGGAAGAGG+AGG | - | chr2.4:76379510-76379529 | MS.gene072078:CDS | 65.0% | |
| CTTCCGCATCCTCTGGGCCA+TGG | + | chr2.4:76379507-76379526 | None:intergenic | 65.0% | |
| GCCCACCGAAATTGGCACCG+GGG | + | chr2.4:76379025-76379044 | None:intergenic | 65.0% | |
| GGATGCGGAAGAGGAGGAGG+AGG | - | chr2.4:76379516-76379535 | MS.gene072078:CDS | 65.0% | |
| TCTCCTCCCGCTCCCTCCTA+CGG | + | chr2.4:76378629-76378648 | None:intergenic | 65.0% | |
| TGGCCCAGAGGATGCGGAAG+AGG | - | chr2.4:76379507-76379526 | MS.gene072078:CDS | 65.0% | |
| ! | CTCCCCGGTGCCAATTTCGG+TGG | - | chr2.4:76379020-76379039 | MS.gene072078:intron | 65.0% |
| !! | AAAGCGCCGTAGGAGGGAGC+GGG | - | chr2.4:76378620-76378639 | MS.gene072078:CDS | 65.0% |
| ! | GCGCCGTAGGAGGGAGCGGG+AGG | - | chr2.4:76378623-76378642 | MS.gene072078:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 76376113 | 76380017 | 76376113 | ID=MS.gene072078 |
| chr2.4 | mRNA | 76376113 | 76380017 | 76376113 | ID=MS.gene072078.t1;Parent=MS.gene072078 |
| chr2.4 | exon | 76379418 | 76380017 | 76379418 | ID=MS.gene072078.t1.exon1;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76379418 | 76380017 | 76379418 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76379227 | 76379304 | 76379227 | ID=MS.gene072078.t1.exon2;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76379227 | 76379304 | 76379227 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76378490 | 76378733 | 76378490 | ID=MS.gene072078.t1.exon3;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76378490 | 76378733 | 76378490 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76378014 | 76378104 | 76378014 | ID=MS.gene072078.t1.exon4;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76378014 | 76378104 | 76378014 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76377414 | 76377552 | 76377414 | ID=MS.gene072078.t1.exon5;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76377414 | 76377552 | 76377414 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76376398 | 76376820 | 76376398 | ID=MS.gene072078.t1.exon6;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76376398 | 76376820 | 76376398 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| chr2.4 | exon | 76376113 | 76376310 | 76376113 | ID=MS.gene072078.t1.exon7;Parent=MS.gene072078.t1 |
| chr2.4 | CDS | 76376113 | 76376310 | 76376113 | ID=cds.MS.gene072078.t1;Parent=MS.gene072078.t1 |
| Gene Sequence |
| Protein sequence |
