Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072579.t1 | AFK41357.1 | 100 | 86 | 0 | 0 | 1 | 86 | 176 | 261 | 1.40E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072579.t1 | Q8L9A0 | 84.9 | 86 | 13 | 0 | 1 | 86 | 146 | 231 | 3.6e-36 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072579.t1 | G7KWH0 | 100.0 | 86 | 0 | 0 | 1 | 86 | 166 | 251 | 1.0e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050084 | MS.gene072579 | 0.813774 | 2.16E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene072579 | 0.837881 | 4.00E-57 | -1.69E-46 |
| MS.gene050386 | MS.gene072579 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene072579 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene072579 | 0.855659 | 5.44E-62 | -1.69E-46 |
| MS.gene051003 | MS.gene072579 | 0.8364 | 9.57E-57 | -1.69E-46 |
| MS.gene051234 | MS.gene072579 | 0.801721 | 7.88E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene072579 | 0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene051975 | MS.gene072579 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene072579 | 0.813399 | 2.61E-51 | -1.69E-46 |
| MS.gene052342 | MS.gene072579 | 0.834131 | 3.58E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene072579 | 0.829558 | 4.81E-55 | -1.69E-46 |
| MS.gene056097 | MS.gene072579 | 0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene072579 | 0.827315 | 1.67E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene072579 | 0.813739 | 2.20E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene072579 | 0.843072 | 1.75E-58 | -1.69E-46 |
| MS.gene06010 | MS.gene072579 | 0.815997 | 6.94E-52 | -1.69E-46 |
| MS.gene06011 | MS.gene072579 | 0.807351 | 5.27E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene072579 | 0.803224 | 3.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072579.t1 | MTR_7g111750 | 100.000 | 86 | 0 | 0 | 1 | 86 | 166 | 251 | 7.40e-58 | 179 |
| MS.gene072579.t1 | MTR_7g111750 | 100.000 | 86 | 0 | 0 | 1 | 86 | 176 | 261 | 1.24e-57 | 179 |
| MS.gene072579.t1 | MTR_2g058400 | 98.837 | 86 | 1 | 0 | 1 | 86 | 244 | 329 | 5.12e-56 | 176 |
| MS.gene072579.t1 | MTR_1g096460 | 51.163 | 86 | 42 | 0 | 1 | 86 | 98 | 183 | 1.39e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072579.t1 | AT4G30930 | 84.884 | 86 | 13 | 0 | 1 | 86 | 146 | 231 | 1.99e-39 | 131 |
| MS.gene072579.t1 | AT1G35680 | 47.674 | 86 | 45 | 0 | 1 | 86 | 106 | 191 | 1.22e-16 | 71.2 |
Find 0 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATAGGAAAAATAA+TGG | - | 51785:41160-41179 | None:intergenic | 10.0% |
| !! | AATCTTATTAAATACTTAAT+TGG | + | 51785:39824-39843 | MS.gene072579:intron | 10.0% |
| !!! | ATATCAAATTTATTTTTAAC+TGG | - | 51785:40077-40096 | None:intergenic | 10.0% |
| !!! | ATTTTTCCTATTTAATTTAA+GGG | + | 51785:41162-41181 | MS.gene072579:intron | 10.0% |
| !!! | TATTTTTCCTATTTAATTTA+AGG | + | 51785:41161-41180 | MS.gene072579:intron | 10.0% |
| !! | TTTGCTGAATTTAAATTAAA+TGG | + | 51785:40445-40464 | MS.gene072579:intron | 15.0% |
| !!! | AATACAAGTTTATTTTAACT+TGG | + | 51785:43148-43167 | MS.gene072579:intron | 15.0% |
| !!! | ATATTTTTCTTAGATAAAAG+AGG | - | 51785:42861-42880 | None:intergenic | 15.0% |
| !!! | TATTTTTCTTAGATAAAAGA+GGG | - | 51785:42860-42879 | None:intergenic | 15.0% |
| !!! | TCTTTTATCTAAGAAAAATA+TGG | + | 51785:42860-42879 | MS.gene072579:intron | 15.0% |
| !!! | TGATTTTCTAAAAAAATTAG+CGG | + | 51785:42136-42155 | MS.gene072579:intron | 15.0% |
| !!! | TTTCTATTTTCTTTTTGTTA+TGG | + | 51785:39881-39900 | MS.gene072579:intron | 15.0% |
| !!! | TTTTAAAATCTCAAGATTAT+AGG | - | 51785:41949-41968 | None:intergenic | 15.0% |
| !! | AAAAAATATGAACTTCCTAA+TGG | + | 51785:42605-42624 | MS.gene072579:intron | 20.0% |
| !! | AAAAATGTATTTATTCTCCT+TGG | + | 51785:42996-43015 | MS.gene072579:intron | 20.0% |
| !! | AAACATAGAAAAAGATATCA+AGG | - | 51785:42946-42965 | None:intergenic | 20.0% |
| !! | AGATAATATAAAACGAGTTT+AGG | + | 51785:42320-42339 | MS.gene072579:intron | 20.0% |
| !! | ATTGTTTAAAGAACTAAAAG+AGG | - | 51785:41312-41331 | None:intergenic | 20.0% |
| !! | ATTTGTATATATGAGAATAC+TGG | + | 51785:39409-39428 | MS.gene072579:intron | 20.0% |
| !! | CAAAGAAGTTTATTAAAAAG+AGG | - | 51785:43093-43112 | None:intergenic | 20.0% |
| !! | TTTGTATATATGAGAATACT+GGG | + | 51785:39410-39429 | MS.gene072579:intron | 20.0% |
| !!! | AAAAATGAGTATTGCTTTTT+AGG | - | 51785:42734-42753 | None:intergenic | 20.0% |
| !!! | AAGCAATACTCATTTTTTAT+TGG | + | 51785:42737-42756 | MS.gene072579:intron | 20.0% |
| !!! | ATAATTTTTCTATCTTTGCT+AGG | - | 51785:40507-40526 | None:intergenic | 20.0% |
| !!! | ATTTTATTAAGGAAAAACAC+TGG | - | 51785:41064-41083 | None:intergenic | 20.0% |
| !!! | CTTTTAATTTTCTCAACAAT+AGG | - | 51785:40274-40293 | None:intergenic | 20.0% |
| !!! | GTTTTCAATTTGAATATTGT+GGG | + | 51785:39646-39665 | MS.gene072579:intron | 20.0% |
| !!! | TAAGAAAAATATGGAGTTTT+GGG | + | 51785:42869-42888 | MS.gene072579:intron | 20.0% |
| !!! | TATATTGTTGTTACAGTTAA+TGG | - | 51785:41603-41622 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTAAATCTCTCA+CGG | + | 51785:42028-42047 | MS.gene072579:intron | 20.0% |
| !!! | TTTTCAATTTGAATATTGTG+GGG | + | 51785:39647-39666 | MS.gene072579:intron | 20.0% |
| !!! | TTTTTGTTTCTTCTCATATA+CGG | + | 51785:43028-43047 | MS.gene072579:intron | 20.0% |
| ! | AAAAAAAATTCCATGTTGAG+TGG | + | 51785:41796-41815 | MS.gene072579:intron | 25.0% |
| ! | AAAATGCAATTAACAGTCTT+TGG | - | 51785:40396-40415 | None:intergenic | 25.0% |
| ! | AAAGAATTGTGTACAGAATA+TGG | + | 51785:40765-40784 | MS.gene072579:intron | 25.0% |
| ! | AACTCTTCGTATTGTATATT+TGG | + | 51785:42422-42441 | MS.gene072579:intron | 25.0% |
| ! | AAGAATTGTGTACAGAATAT+GGG | + | 51785:40766-40785 | MS.gene072579:intron | 25.0% |
| ! | AGAAGTTTATTAAAAAGAGG+AGG | - | 51785:43090-43109 | None:intergenic | 25.0% |
| ! | AGACATGTAAGATTATTAAG+AGG | + | 51785:42452-42471 | MS.gene072579:intron | 25.0% |
| ! | ATAAGTCAAACTATTAAGAC+CGG | + | 51785:39608-39627 | MS.gene072579:intron | 25.0% |
| ! | ATGAAACATAAAACTGAAAG+AGG | - | 51785:40162-40181 | None:intergenic | 25.0% |
| ! | CAAAATACTTCGCAAATAAA+AGG | - | 51785:39383-39402 | None:intergenic | 25.0% |
| ! | GAAAACATATTATCTATGAC+TGG | + | 51785:40718-40737 | MS.gene072579:intron | 25.0% |
| ! | TACAGGGTATAAAAAAATTG+AGG | + | 51785:42773-42792 | MS.gene072579:intron | 25.0% |
| ! | TCAAAAGATGTAGATGATTA+AGG | + | 51785:41380-41399 | MS.gene072579:intron | 25.0% |
| ! | TGAAACATAAAACTGAAAGA+GGG | - | 51785:40161-40180 | None:intergenic | 25.0% |
| ! | TGAAATAAAGCTACACAAAA+TGG | - | 51785:39730-39749 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | 51785:42111-42130 | None:intergenic | 25.0% |
| ! | TTTCATCTTTATCCTGTAAA+AGG | + | 51785:43123-43142 | MS.gene072579:intron | 25.0% |
| !! | AAACCATTTAAATCTAAAGC+CGG | - | 51785:39630-39649 | None:intergenic | 25.0% |
| !! | AAGAAAAATATGGAGTTTTG+GGG | + | 51785:42870-42889 | MS.gene072579:intron | 25.0% |
| !! | AATCATCTACATCTTTTGAT+TGG | - | 51785:41379-41398 | None:intergenic | 25.0% |
| !! | AATTCCTCGACATTTTATTA+AGG | - | 51785:41075-41094 | None:intergenic | 25.0% |
| !! | ATATTGCAGCATATTTCTAT+TGG | + | 51785:39787-39806 | MS.gene072579:intron | 25.0% |
| !! | ATCAATTTAAAGTGAGCAAT+GGG | + | 51785:39300-39319 | MS.gene072579:CDS | 25.0% |
| !! | ATTATCTAGAGTAGATAATG+TGG | + | 51785:42489-42508 | MS.gene072579:intron | 25.0% |
| !! | ATTGGCTTACGATTAAATTA+AGG | - | 51785:41361-41380 | None:intergenic | 25.0% |
| !! | CTAAGAAAAATATGGAGTTT+TGG | + | 51785:42868-42887 | MS.gene072579:intron | 25.0% |
| !! | GAATTTAAGAAGGAACATTT+TGG | + | 51785:40687-40706 | MS.gene072579:intron | 25.0% |
| !! | GGTTTTCAATTTGAATATTG+TGG | + | 51785:39645-39664 | MS.gene072579:intron | 25.0% |
| !! | TACATAGTGTATCTAAAACT+AGG | - | 51785:39761-39780 | None:intergenic | 25.0% |
| !! | TTTTCCTTAATAAAATGTCG+AGG | + | 51785:41068-41087 | MS.gene072579:intron | 25.0% |
| !!! | AAACATTCCATTGCATTTTT+TGG | + | 51785:39924-39943 | MS.gene072579:intron | 25.0% |
| !!! | AAGTTTATTTTAACTTGGAG+GGG | + | 51785:43153-43172 | MS.gene072579:intron | 25.0% |
| !!! | ACAAGTTTATTTTAACTTGG+AGG | + | 51785:43151-43170 | MS.gene072579:intron | 25.0% |
| !!! | ATACGTTTTGATTTTATCAC+TGG | - | 51785:42282-42301 | None:intergenic | 25.0% |
| !!! | CAAGTTTATTTTAACTTGGA+GGG | + | 51785:43152-43171 | MS.gene072579:intron | 25.0% |
| !!! | CAATACTCATTTTTTATTGG+AGG | + | 51785:42740-42759 | MS.gene072579:intron | 25.0% |
| !!! | CTAATTTTGAGAGTAGAAAT+GGG | + | 51785:40111-40130 | MS.gene072579:intron | 25.0% |
| !!! | CTTTTATTTGCGAAGTATTT+TGG | + | 51785:39381-39400 | MS.gene072579:intron | 25.0% |
| !!! | GAATCTTGTTTTAAGGAATT+TGG | + | 51785:39517-39536 | MS.gene072579:intron | 25.0% |
| !!! | TCTAATTTTGAGAGTAGAAA+TGG | + | 51785:40110-40129 | MS.gene072579:intron | 25.0% |
| AACAATATAAGAGAGAACAG+AGG | + | 51785:41614-41633 | MS.gene072579:intron | 30.0% | |
| AAGGAAAAACACTGGAAAAT+AGG | - | 51785:41056-41075 | None:intergenic | 30.0% | |
| AATGGACAAGCTATCATAAT+TGG | + | 51785:42623-42642 | MS.gene072579:intron | 30.0% | |
| ACTAGATGAACTATTTCCTA+AGG | + | 51785:43052-43071 | MS.gene072579:intron | 30.0% | |
| AGGAAAAACACTGGAAAATA+GGG | - | 51785:41055-41074 | None:intergenic | 30.0% | |
| AGTCAGTTGTAATATTGAAG+TGG | + | 51785:41009-41028 | MS.gene072579:intron | 30.0% | |
| ATAACTGTATAACCTGGAAT+GGG | + | 51785:40852-40871 | MS.gene072579:intron | 30.0% | |
| ATGGACAAGCTATCATAATT+GGG | + | 51785:42624-42643 | MS.gene072579:intron | 30.0% | |
| ATTCCAGGTTATACAGTTAT+CGG | - | 51785:40852-40871 | None:intergenic | 30.0% | |
| ATTGTGTTCAGAATTCCAAA+TGG | + | 51785:41754-41773 | MS.gene072579:intron | 30.0% | |
| CAGTTAAACATAAAACAACG+TGG | + | 51785:41896-41915 | MS.gene072579:intron | 30.0% | |
| CCACATCATAATTAAGATCA+CGG | - | 51785:40656-40675 | None:intergenic | 30.0% | |
| GAGGGTAATTAAATAGTTAG+AGG | + | 51785:39569-39588 | MS.gene072579:intron | 30.0% | |
| GCATGACCCTTAAATTAAAT+AGG | - | 51785:41171-41190 | None:intergenic | 30.0% | |
| GTGAATACGTAAGACAAATA+AGG | + | 51785:39441-39460 | MS.gene072579:intron | 30.0% | |
| TAAAGTTCAAGAAAGAAGAG+TGG | + | 51785:40538-40557 | MS.gene072579:intron | 30.0% | |
| TACGTAAGACAAATAAGGAT+TGG | + | 51785:39446-39465 | MS.gene072579:intron | 30.0% | |
| TATATATGAGAATACTGGGA+TGG | + | 51785:39414-39433 | MS.gene072579:intron | 30.0% | |
| TATGGGAAACATGAATATGT+AGG | + | 51785:40783-40802 | MS.gene072579:intron | 30.0% | |
| TATTGAAGTGGTAGAATTAG+TGG | + | 51785:41021-41040 | MS.gene072579:intron | 30.0% | |
| TCCAATATGATTGCAATGAT+AGG | - | 51785:40218-40237 | None:intergenic | 30.0% | |
| TCCTATCATTGCAATCATAT+TGG | + | 51785:40214-40233 | MS.gene072579:intron | 30.0% | |
| TCTAAAAAAATTAGCGGTGT+CGG | + | 51785:42142-42161 | MS.gene072579:intron | 30.0% | |
| TTAATGGTTATCATCTCCTT+AGG | - | 51785:41587-41606 | None:intergenic | 30.0% | |
| TTCTTTAAACAATGCCTCAA+GGG | + | 51785:41319-41338 | MS.gene072579:intron | 30.0% | |
| ! | AACTTGTATTCTCCTTTTAC+AGG | - | 51785:43138-43157 | None:intergenic | 30.0% |
| ! | ATATTATCTATGACTGGTCA+TGG | + | 51785:40724-40743 | MS.gene072579:intron | 30.0% |
| ! | ATGGTTGTTTATCTCAGTTT+TGG | - | 51785:40606-40625 | None:intergenic | 30.0% |
| ! | ATTATGATAGCTTGTCCATT+AGG | - | 51785:42623-42642 | None:intergenic | 30.0% |
| ! | ATTTTGCGAAGTGAATGATA+AGG | + | 51785:39349-39368 | MS.gene072579:CDS | 30.0% |
| ! | CATCAATTTAAAGTGAGCAA+TGG | + | 51785:39299-39318 | MS.gene072579:CDS | 30.0% |
| ! | TCAATTTAAAGTGAGCAATG+GGG | + | 51785:39301-39320 | MS.gene072579:CDS | 30.0% |
| ! | TTCGTATTGTATATTTGGTG+AGG | + | 51785:42427-42446 | MS.gene072579:intron | 30.0% |
| !! | AAATTGAGGTTTTAGCAAGT+TGG | - | 51785:41842-41861 | None:intergenic | 30.0% |
| !! | AACTTGCTAAAACCTCAATT+TGG | + | 51785:41841-41860 | MS.gene072579:intron | 30.0% |
| !! | CATTGTTTTGTCTTTTGTCT+AGG | - | 51785:40951-40970 | None:intergenic | 30.0% |
| !! | CGTTGTTTTATGTTTAACTG+AGG | - | 51785:41896-41915 | None:intergenic | 30.0% |
| !!! | GATGGTAGAATCTTGTTTTA+AGG | + | 51785:39510-39529 | MS.gene072579:intron | 30.0% |
| AAACCGATAACTGTATAACC+TGG | + | 51785:40846-40865 | MS.gene072579:intron | 35.0% | |
| AACAAAAAACATCACGACCA+AGG | - | 51785:43016-43035 | None:intergenic | 35.0% | |
| AAGAATTACCGAAGAACCAA+AGG | + | 51785:43298-43317 | MS.gene072579:CDS | 35.0% | |
| AAGCTCTTGTTCATAATCCA+AGG | - | 51785:42555-42574 | None:intergenic | 35.0% | |
| AAGTAAGTAGGTGAAATGGA+GGG | + | 51785:39551-39570 | MS.gene072579:intron | 35.0% | |
| ACTTCCATTCCAATCATAGA+TGG | - | 51785:42686-42705 | None:intergenic | 35.0% | |
| AGAATTACCGAAGAACCAAA+GGG | + | 51785:43299-43318 | MS.gene072579:CDS | 35.0% | |
| AGGAGTAAGTCAGTTATTGT+AGG | - | 51785:41532-41551 | None:intergenic | 35.0% | |
| ATTCCTCAAACAATGCACTT+AGG | - | 51785:41204-41223 | None:intergenic | 35.0% | |
| ATTTCACCTACTTACTTAGC+GGG | - | 51785:39548-39567 | None:intergenic | 35.0% | |
| CATTTCACCTACTTACTTAG+CGG | - | 51785:39549-39568 | None:intergenic | 35.0% | |
| CCGTGATCTTAATTATGATG+TGG | + | 51785:40653-40672 | MS.gene072579:intron | 35.0% | |
| CTGAACAAAGTTCTATTGCT+TGG | + | 51785:39963-39982 | MS.gene072579:CDS | 35.0% | |
| GAAGATGTGTTGCAATTTAG+GGG | - | 51785:40634-40653 | None:intergenic | 35.0% | |
| GAGGATAATAGATCATCCTT+AGG | - | 51785:43071-43090 | None:intergenic | 35.0% | |
| GATAACTGTATAACCTGGAA+TGG | + | 51785:40851-40870 | MS.gene072579:intron | 35.0% | |
| GATACGTCAAAGAGAAAATC+AGG | + | 51785:39468-39487 | MS.gene072579:intron | 35.0% | |
| GCAATGGAATGTTTAATTGC+TGG | - | 51785:39918-39937 | None:intergenic | 35.0% | |
| GGAAGATGTGTTGCAATTTA+GGG | - | 51785:40635-40654 | None:intergenic | 35.0% | |
| GTTCTTTAAACAATGCCTCA+AGG | + | 51785:41318-41337 | MS.gene072579:intron | 35.0% | |
| TAAGTAAGTAGGTGAAATGG+AGG | + | 51785:39550-39569 | MS.gene072579:intron | 35.0% | |
| TACAAGAGAGGAGCTAAAAA+AGG | + | 51785:40806-40825 | MS.gene072579:intron | 35.0% | |
| TGAATATGTAGGTACAAGAG+AGG | + | 51785:40794-40813 | MS.gene072579:intron | 35.0% | |
| TGCTGGAATGGAGATATTAA+GGG | + | 51785:42706-42725 | MS.gene072579:intron | 35.0% | |
| TGGACAAGCTATCATAATTG+GGG | + | 51785:42625-42644 | MS.gene072579:intron | 35.0% | |
| TGGAGGATACTATTACTACA+GGG | + | 51785:42757-42776 | MS.gene072579:intron | 35.0% | |
| TGTTCCTTCTTAAATTCCCT+AGG | - | 51785:40684-40703 | None:intergenic | 35.0% | |
| TTCCTCAAACAATGCACTTA+GGG | - | 51785:41203-41222 | None:intergenic | 35.0% | |
| TTCTTAGATAAAAGAGGGCA+GGG | - | 51785:42855-42874 | None:intergenic | 35.0% | |
| TTGCAATTTAGGGGTTTACA+TGG | - | 51785:40625-40644 | None:intergenic | 35.0% | |
| TTGCTGGAATGGAGATATTA+AGG | + | 51785:42705-42724 | MS.gene072579:intron | 35.0% | |
| TTGGAGGATACTATTACTAC+AGG | + | 51785:42756-42775 | MS.gene072579:intron | 35.0% | |
| TTGTCTGTATTACTTACAGC+TGG | - | 51785:41125-41144 | None:intergenic | 35.0% | |
| TTTCCTTCTACTCCAAATTG+AGG | - | 51785:41856-41875 | None:intergenic | 35.0% | |
| TTTCTTAGATAAAAGAGGGC+AGG | - | 51785:42856-42875 | None:intergenic | 35.0% | |
| ! | AAACCTCAATTTGGAGTAGA+AGG | + | 51785:41850-41869 | MS.gene072579:intron | 35.0% |
| ! | ACTCATTTTCCCCTTATATC+AGG | + | 51785:43234-43253 | MS.gene072579:intron | 35.0% |
| ! | ATGTCATTTAGTAGCACTTC+TGG | - | 51785:40247-40266 | None:intergenic | 35.0% |
| ! | CGAATGAAGACTCTTTTTGA+AGG | - | 51785:42352-42371 | None:intergenic | 35.0% |
| ! | GTAGACATGATAATGACCTA+AGG | + | 51785:41568-41587 | MS.gene072579:intron | 35.0% |
| ! | GTTTTCTTTACCTAGTTCGA+AGG | - | 51785:40374-40393 | None:intergenic | 35.0% |
| ! | TCGATGTGTTCTTTTGGATT+GGG | - | 51785:41509-41528 | None:intergenic | 35.0% |
| !! | AGACCGGCTTTAGATTTAAA+TGG | + | 51785:39624-39643 | MS.gene072579:intron | 35.0% |
| !! | GAAACTTGTTAGAAGTAAGC+AGG | + | 51785:41643-41662 | MS.gene072579:intron | 35.0% |
| !! | GGGATTACTTTAGAATAGAG+TGG | + | 51785:40131-40150 | MS.gene072579:intron | 35.0% |
| !! | GTGTAAGGATTGATTTGAAG+TGG | + | 51785:43175-43194 | MS.gene072579:intron | 35.0% |
| !! | TTTTGGTTGTTCTTCCATCT+TGG | - | 51785:40589-40608 | None:intergenic | 35.0% |
| !!! | TGTTTGGGAACTGCTTTTTT+GGG | - | 51785:41439-41458 | None:intergenic | 35.0% |
| AAACAACGACAAGGTAGACT+TGG | - | 51785:39689-39708 | None:intergenic | 40.0% | |
| AATATTGCGACCTTCGAACT+AGG | + | 51785:40361-40380 | MS.gene072579:intron | 40.0% | |
| ACGTCAAAGAGAAAATCAGG+TGG | + | 51785:39471-39490 | MS.gene072579:intron | 40.0% | |
| AGACAATGGAGTTCCTGTTT+GGG | - | 51785:41454-41473 | None:intergenic | 40.0% | |
| ATGATTGGAATGGAAGTTGC+TGG | + | 51785:42689-42708 | MS.gene072579:intron | 40.0% | |
| ATTATGATGTGGTGTAGCCT+AGG | + | 51785:40664-40683 | MS.gene072579:intron | 40.0% | |
| CAAAAAAGCAGTTCCCAAAC+AGG | + | 51785:41438-41457 | MS.gene072579:intron | 40.0% | |
| CAATCATAGATGGCTGGAAA+AGG | - | 51785:42676-42695 | None:intergenic | 40.0% | |
| CAGTGAGCCAAAAAATGCAA+TGG | - | 51785:39934-39953 | None:intergenic | 40.0% | |
| CATCTAGTGCCTGATATAAG+GGG | - | 51785:43246-43265 | None:intergenic | 40.0% | |
| CATGGTAGAACAGTACAAGA+AGG | + | 51785:40742-40761 | MS.gene072579:intron | 40.0% | |
| CGCTAAGTAAGTAGGTGAAA+TGG | + | 51785:39547-39566 | MS.gene072579:intron | 40.0% | |
| CGGAAGATGTGTTGCAATTT+AGG | - | 51785:40636-40655 | None:intergenic | 40.0% | |
| CTACCTTGTGTTAGATCACA+TGG | + | 51785:40878-40897 | MS.gene072579:intron | 40.0% | |
| CTGGAATGGAGATATTAAGG+GGG | + | 51785:42708-42727 | MS.gene072579:intron | 40.0% | |
| GAAACAACCAAGATAGAACC+AGG | + | 51785:41700-41719 | MS.gene072579:intron | 40.0% | |
| GAAGTGAATGATAAGGTGAG+TGG | + | 51785:39356-39375 | MS.gene072579:intron | 40.0% | |
| GCATCTAGTGCCTGATATAA+GGG | - | 51785:43247-43266 | None:intergenic | 40.0% | |
| GCTGGAATGGAGATATTAAG+GGG | + | 51785:42707-42726 | MS.gene072579:intron | 40.0% | |
| GCTGTACAAAAACAACGACA+AGG | - | 51785:39698-39717 | None:intergenic | 40.0% | |
| GTAGCCTAGGGAATTTAAGA+AGG | + | 51785:40677-40696 | MS.gene072579:intron | 40.0% | |
| GTCTGTCTACATCTACTAAC+AGG | + | 51785:41402-41421 | MS.gene072579:intron | 40.0% | |
| GTTCAGAATTCCAAATGGAC+TGG | + | 51785:41759-41778 | MS.gene072579:intron | 40.0% | |
| TCAGAGGCTAAACTTGCAAT+AGG | - | 51785:40919-40938 | None:intergenic | 40.0% | |
| TGACCATGTGATCTAACACA+AGG | - | 51785:40884-40903 | None:intergenic | 40.0% | |
| TGCCAACAATTGTCTGACTA+GGG | - | 51785:39992-40011 | None:intergenic | 40.0% | |
| TGTTAGATCACATGGTCACT+GGG | + | 51785:40886-40905 | MS.gene072579:intron | 40.0% | |
| TTATGATGTGGTGTAGCCTA+GGG | + | 51785:40665-40684 | MS.gene072579:intron | 40.0% | |
| TTCCCTAAGTGCATTGTTTG+AGG | + | 51785:41198-41217 | MS.gene072579:intron | 40.0% | |
| TTGCTTCAGTAAATACGCGT+AGG | - | 51785:42391-42410 | None:intergenic | 40.0% | |
| ! | CTTTTCCAGCCATCTATGAT+TGG | + | 51785:42674-42693 | MS.gene072579:intron | 40.0% |
| ! | GTCGATGTGTTCTTTTGGAT+TGG | - | 51785:41510-41529 | None:intergenic | 40.0% |
| ! | TGTAGGTCGATGTGTTCTTT+TGG | - | 51785:41515-41534 | None:intergenic | 40.0% |
| ! | TTCTTCCATCTTGGAAGTGT+TGG | - | 51785:40580-40599 | None:intergenic | 40.0% |
| !! | ATGTGTTCTTTTGGATTGGG+AGG | - | 51785:41506-41525 | None:intergenic | 40.0% |
| !! | TGACTTTCCTGGTTCTATCT+TGG | - | 51785:41710-41729 | None:intergenic | 40.0% |
| !! | TGTGTTCTTTTGGATTGGGA+GGG | - | 51785:41505-41524 | None:intergenic | 40.0% |
| !!! | CTGTTTGGGAACTGCTTTTT+TGG | - | 51785:41440-41459 | None:intergenic | 40.0% |
| !!! | TTTTAACTTGGAGGGGTGTA+AGG | + | 51785:43160-43179 | MS.gene072579:intron | 40.0% |
| AAAATTGAGGCCCATCCTTG+AGG | + | 51785:42786-42805 | MS.gene072579:intron | 45.0% | |
| AAATTGAGGCCCATCCTTGA+GGG | + | 51785:42787-42806 | MS.gene072579:intron | 45.0% | |
| AAGAACCAGCATGACTTTCC+TGG | - | 51785:41721-41740 | None:intergenic | 45.0% | |
| AATGCTAACAAGTGCCCTTG+AGG | - | 51785:41336-41355 | None:intergenic | 45.0% | |
| AGAAAATCAGGTGGCACGTA+TGG | + | 51785:39480-39499 | MS.gene072579:intron | 45.0% | |
| AGACTCTTTGCCCTCTTTCA+GGG | + | 51785:42211-42230 | MS.gene072579:intron | 45.0% | |
| AGCCTCTCAACATATCTGCA+AGG | - | 51785:41986-42005 | None:intergenic | 45.0% | |
| AGCTGTTCATGCTGTTGTTG+AGG | + | 51785:40031-40050 | MS.gene072579:CDS | 45.0% | |
| AGGAACTATGCGTCCATCAT+GGG | + | 51785:41663-41682 | MS.gene072579:intron | 45.0% | |
| ATATCAGGCACTAGATGCGA+AGG | + | 51785:43249-43268 | MS.gene072579:intron | 45.0% | |
| ATCCAAGGCAACAAGAACAG+AGG | - | 51785:42540-42559 | None:intergenic | 45.0% | |
| ATGGCTGGAAAAGGACTTCT+AGG | - | 51785:42667-42686 | None:intergenic | 45.0% | |
| CCAGCCATCTATGATTGGAA+TGG | + | 51785:42679-42698 | MS.gene072579:intron | 45.0% | |
| CCATTCCAATCATAGATGGC+TGG | - | 51785:42682-42701 | None:intergenic | 45.0% | |
| CGCATCTAGTGCCTGATATA+AGG | - | 51785:43248-43267 | None:intergenic | 45.0% | |
| CTATCATAATTGGGGCTGAG+AGG | + | 51785:42633-42652 | MS.gene072579:intron | 45.0% | |
| CTGCCAACAATTGTCTGACT+AGG | - | 51785:39993-40012 | None:intergenic | 45.0% | |
| GAAATTGAAGCTGCCCATGA+TGG | - | 51785:41679-41698 | None:intergenic | 45.0% | |
| GAGACAATGGAGTTCCTGTT+TGG | - | 51785:41455-41474 | None:intergenic | 45.0% | |
| GAGTCTATGAAGCACGGATA+CGG | - | 51785:42197-42216 | None:intergenic | 45.0% | |
| GCCAACAATTGTCTGACTAG+GGG | - | 51785:39991-40010 | None:intergenic | 45.0% | |
| GCCTCTCAACATATCTGCAA+GGG | - | 51785:41985-42004 | None:intergenic | 45.0% | |
| GGAAAAGGACTTCTAGGCAA+CGG | - | 51785:42661-42680 | None:intergenic | 45.0% | |
| GGCAAAGAGTCTATGAAGCA+CGG | - | 51785:42203-42222 | None:intergenic | 45.0% | |
| GGCACGTATGGTACAAAAGA+TGG | + | 51785:39492-39511 | MS.gene072579:intron | 45.0% | |
| GTGTTAGATCACATGGTCAC+TGG | + | 51785:40885-40904 | MS.gene072579:intron | 45.0% | |
| TAAGAGAGAACAGAGGCAGA+TGG | + | 51785:41621-41640 | MS.gene072579:intron | 45.0% | |
| TAGAACCAGGAAAGTCATGC+TGG | + | 51785:41713-41732 | MS.gene072579:intron | 45.0% | |
| TAGACTCTTTGCCCTCTTTC+AGG | + | 51785:42210-42229 | MS.gene072579:intron | 45.0% | |
| TCCCCTAGTCAGACAATTGT+TGG | + | 51785:39987-40006 | MS.gene072579:CDS | 45.0% | |
| TCCCTTGCAGATATGTTGAG+AGG | + | 51785:41981-42000 | MS.gene072579:intron | 45.0% | |
| TCTCAGTGCCAGAATCATGT+AGG | + | 51785:41471-41490 | MS.gene072579:intron | 45.0% | |
| TGCATCCAACACTTCCAAGA+TGG | + | 51785:40572-40591 | MS.gene072579:intron | 45.0% | |
| TGGAATGGAAGTTGCTGGAA+TGG | + | 51785:42694-42713 | MS.gene072579:intron | 45.0% | |
| TGGTATAGATCAGTCCAGTC+TGG | - | 51785:41822-41841 | None:intergenic | 45.0% | |
| ! | GACAAGGTAGACTTGGTACA+TGG | - | 51785:39682-39701 | None:intergenic | 45.0% |
| ! | TGATTCTGGCACTGAGACAA+TGG | - | 51785:41468-41487 | None:intergenic | 45.0% |
| ! | TGGTTGGTCCTACATGATTC+TGG | - | 51785:41482-41501 | None:intergenic | 45.0% |
| !! | AGGAAAGTCATGCTGGTTCT+TGG | + | 51785:41720-41739 | MS.gene072579:intron | 45.0% |
| !! | GTCTAGGTTTTTCAGCTCAG+AGG | - | 51785:40935-40954 | None:intergenic | 45.0% |
| !! | TATATGTGTCGGTGTCGTGT+CGG | - | 51785:42100-42119 | None:intergenic | 45.0% |
| AATCTCTCACGGACACTCCT+CGG | + | 51785:42039-42058 | MS.gene072579:intron | 50.0% | |
| ACAAGGTAGAGTCCCATTCC+AGG | - | 51785:40867-40886 | None:intergenic | 50.0% | |
| ACAGCATGAACAGCTCCATC+CGG | - | 51785:40026-40045 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | 51785:42191-42210 | None:intergenic | 50.0% | |
| CAAGGCAACAAGAACAGAGG+TGG | - | 51785:42537-42556 | None:intergenic | 50.0% | |
| CACCTCTGTTCTTGTTGCCT+TGG | + | 51785:42535-42554 | MS.gene072579:intron | 50.0% | |
| CAGGAACTATGCGTCCATCA+TGG | + | 51785:41662-41681 | MS.gene072579:intron | 50.0% | |
| ! | ACGCGTAGGAAGTCTCGTTT+TGG | - | 51785:42377-42396 | None:intergenic | 50.0% |
| !! | GACGATGCCCTTTGGTTCTT+CGG | - | 51785:43309-43328 | None:intergenic | 50.0% |
| !! | GTTCTTTTGGATTGGGAGGG+TGG | - | 51785:41502-41521 | None:intergenic | 50.0% |
| !! | TTCCAAATGGACTGGCTGAG+AGG | + | 51785:41767-41786 | MS.gene072579:intron | 50.0% |
| !! | TTTTGGATTGGGAGGGTGGT+TGG | - | 51785:41498-41517 | None:intergenic | 50.0% |
| AACAGCTCCATCCGGCACAA+TGG | - | 51785:40018-40037 | None:intergenic | 55.0% | |
| ACAGCTCCATCCGGCACAAT+GGG | - | 51785:40017-40036 | None:intergenic | 55.0% | |
| AGCCTCCGAATTCTCAGGGA+CGG | - | 51785:42237-42256 | None:intergenic | 55.0% | |
| CATGACACGTGTCAGACACG+GGG | - | 51785:42076-42095 | None:intergenic | 55.0% | |
| CCATGACACGTGTCAGACAC+GGG | - | 51785:42077-42096 | None:intergenic | 55.0% | |
| GACCTCTCAGCCAGTCCATT+TGG | - | 51785:41772-41791 | None:intergenic | 55.0% | |
| GACTTACTCCTGCAGCACAC+AGG | + | 51785:41541-41560 | MS.gene072579:intron | 55.0% | |
| GAGACGCCCGCTAAGTAAGT+AGG | + | 51785:39539-39558 | MS.gene072579:intron | 55.0% | |
| GCAGACAGCTCAAACGAGCT+GGG | - | 51785:42816-42835 | None:intergenic | 55.0% | |
| GCCATGACACGTGTCAGACA+CGG | - | 51785:42078-42097 | None:intergenic | 55.0% | |
| TCACGGACACTCCTCGGATA+AGG | + | 51785:42045-42064 | MS.gene072579:intron | 55.0% | |
| TCCAGTCTGGCCACTCAACA+TGG | - | 51785:41809-41828 | None:intergenic | 55.0% | |
| TCCATGTTGAGTGGCCAGAC+TGG | + | 51785:41805-41824 | MS.gene072579:intron | 55.0% | |
| TCCCTGAGAATTCGGAGGCT+CGG | + | 51785:42237-42256 | MS.gene072579:intron | 55.0% | |
| TGCAGACAGCTCAAACGAGC+TGG | - | 51785:42817-42836 | None:intergenic | 55.0% | |
| TGTTGGCAGACCCATTGTGC+CGG | + | 51785:40004-40023 | MS.gene072579:CDS | 55.0% | |
| ACGGATACGGACACGGACAC+CGG | - | 51785:42184-42203 | None:intergenic | 60.0% | |
| AGAATTCGGAGGCTCGGCTC+AGG | + | 51785:42243-42262 | MS.gene072579:intron | 60.0% | |
| AGCCGAGCCTCCGAATTCTC+AGG | - | 51785:42242-42261 | None:intergenic | 60.0% | |
| CAGGGCCGTCCCTGAGAATT+CGG | + | 51785:42229-42248 | MS.gene072579:intron | 60.0% | |
| CCCGTGTCTGACACGTGTCA+TGG | + | 51785:42074-42093 | MS.gene072579:intron | 60.0% | |
| CGGTGTGTCAGTGTCGTGTC+CGG | + | 51785:42162-42181 | MS.gene072579:intron | 60.0% | |
| CTACAGTGCCTGTGTGCTGC+AGG | - | 51785:41552-41571 | None:intergenic | 60.0% | |
| GAATTCGGAGGCTCGGCTCA+GGG | + | 51785:42244-42263 | MS.gene072579:intron | 60.0% | |
| GCCGAGCCTCCGAATTCTCA+GGG | - | 51785:42241-42260 | None:intergenic | 60.0% | |
| TCAGGGACGGCCCTGAAAGA+GGG | - | 51785:42224-42243 | None:intergenic | 60.0% | |
| TTGAGGCCCATCCTTGAGGG+AGG | + | 51785:42790-42809 | MS.gene072579:intron | 60.0% | |
| AACGAGCTGGGCCTCCCTCA+AGG | - | 51785:42804-42823 | None:intergenic | 65.0% | |
| ACGGGGACACGCCTTATCCG+AGG | - | 51785:42059-42078 | None:intergenic | 65.0% | |
| AGCTGGGCCTCCCTCAAGGA+TGG | - | 51785:42800-42819 | None:intergenic | 65.0% | |
| CTCAGGGACGGCCCTGAAAG+AGG | - | 51785:42225-42244 | None:intergenic | 65.0% | |
| GAGCTGTCTGCACCCCCTCA+GGG | + | 51785:42825-42844 | MS.gene072579:intron | 65.0% | |
| GCTGGGCCTCCCTCAAGGAT+GGG | - | 51785:42799-42818 | None:intergenic | 65.0% | |
| GGCAGACCCATTGTGCCGGA+TGG | + | 51785:40008-40027 | MS.gene072579:CDS | 65.0% | |
| GGCCGTCCCTGAGAATTCGG+AGG | + | 51785:42232-42251 | MS.gene072579:intron | 65.0% | |
| TGAGCTGTCTGCACCCCCTC+AGG | + | 51785:42824-42843 | MS.gene072579:intron | 65.0% | |
| TGTCTGCACCCCCTCAGGGA+CGG | + | 51785:42829-42848 | MS.gene072579:intron | 65.0% | |
| AGAGGGCAGGGCCGTCCCTG+AGG | - | 51785:42843-42862 | None:intergenic | 75.0% | |
| AGGGCAGGGCCGTCCCTGAG+GGG | - | 51785:42841-42860 | None:intergenic | 75.0% | |
| GAGGGCAGGGCCGTCCCTGA+GGG | - | 51785:42842-42861 | None:intergenic | 75.0% | |
| ! | GGGCAGGGCCGTCCCTGAGG+GGG | - | 51785:42840-42859 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 51785 | gene | 39290 | 43330 | 39290 | ID=MS.gene072579 |
| 51785 | mRNA | 39290 | 43330 | 39290 | ID=MS.gene072579.t1;Parent=MS.gene072579 |
| 51785 | exon | 39290 | 39370 | 39290 | ID=MS.gene072579.t1.exon1;Parent=MS.gene072579.t1 |
| 51785 | CDS | 39290 | 39370 | 39290 | ID=cds.MS.gene072579.t1;Parent=MS.gene072579.t1 |
| 51785 | exon | 39957 | 40058 | 39957 | ID=MS.gene072579.t1.exon2;Parent=MS.gene072579.t1 |
| 51785 | CDS | 39957 | 40058 | 39957 | ID=cds.MS.gene072579.t1;Parent=MS.gene072579.t1 |
| 51785 | exon | 43256 | 43330 | 43256 | ID=MS.gene072579.t1.exon3;Parent=MS.gene072579.t1 |
| 51785 | CDS | 43256 | 43330 | 43256 | ID=cds.MS.gene072579.t1;Parent=MS.gene072579.t1 |
| Gene Sequence |
| Protein sequence |
