Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072601.t1 | ABD33215.1 | 97.4 | 306 | 7 | 1 | 25 | 330 | 132 | 436 | 2.50E-113 | 418.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072601.t1 | Q9UKJ3 | 42.3 | 137 | 78 | 1 | 79 | 214 | 29 | 165 | 1.3e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072601.t1 | G7KWE6 | 97.4 | 306 | 7 | 1 | 25 | 330 | 134 | 438 | 1.8e-113 | 418.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049786 | MS.gene072601 | 0.801187 | 1.01E-48 | -1.69E-46 |
| MS.gene049825 | MS.gene072601 | 0.812688 | 3.74E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene072601 | 0.808744 | 2.66E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene072601 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene072601 | 0.806327 | 8.68E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene072601 | 0.800136 | 1.66E-48 | -1.69E-46 |
| MS.gene05458 | MS.gene072601 | 0.807531 | 4.83E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene072601 | 0.806101 | 9.69E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene072601 | 0.815149 | 1.07E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene072601 | 0.803155 | 3.99E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATATTAAAATAATTTAAC+AGG | + | 50598:27152-27171 | None:intergenic | 10.0% |
| !! | TATTAATTAATAATGATGAA+TGG | + | 50598:25210-25229 | None:intergenic | 10.0% |
| !!! | ATTATTTTTTTATAAAACCA+GGG | + | 50598:26087-26106 | None:intergenic | 10.0% |
| !!! | TTAATTTGATTTTCAATTTT+CGG | - | 50598:25011-25030 | MS.gene072601:intron | 10.0% |
| !! | ATAAATTGTACATGTTTATA+TGG | + | 50598:25521-25540 | None:intergenic | 15.0% |
| !! | ATATTATATATACCCATATA+TGG | - | 50598:26251-26270 | MS.gene072601:intron | 15.0% |
| !! | TATTATATATACCCATATAT+GGG | - | 50598:26252-26271 | MS.gene072601:intron | 15.0% |
| !!! | CATTATTTTTTTATAAAACC+AGG | + | 50598:26088-26107 | None:intergenic | 15.0% |
| !! | AAAATAATTTAACAGGCAAA+AGG | + | 50598:27145-27164 | None:intergenic | 20.0% |
| !! | AATTGAAATTGAAATTGTTC+AGG | - | 50598:25243-25262 | MS.gene072601:intron | 20.0% |
| !! | ACTAGATATTTAATCTATGA+AGG | + | 50598:25557-25576 | None:intergenic | 20.0% |
| !! | ATATACTCATAAGAATGAAA+AGG | + | 50598:27899-27918 | None:intergenic | 20.0% |
| !! | ATATTTAATCTATGAAGGTA+AGG | + | 50598:25552-25571 | None:intergenic | 20.0% |
| !! | ATTTGTTTACAATTGAGATT+GGG | - | 50598:26012-26031 | MS.gene072601:intron | 20.0% |
| !! | CAAATATAAATCAATTATCC+AGG | + | 50598:25997-26016 | None:intergenic | 20.0% |
| !! | TATTTGTTTACAATTGAGAT+TGG | - | 50598:26011-26030 | MS.gene072601:intron | 20.0% |
| !! | TTTAAGCTTCTTCAAAAAAT+GGG | - | 50598:25382-25401 | MS.gene072601:intron | 20.0% |
| !!! | AAAATCATATAGTAGTTTTG+AGG | - | 50598:26571-26590 | MS.gene072601:intron | 20.0% |
| !!! | AACATCAATAATTTTGCATT+AGG | + | 50598:27004-27023 | None:intergenic | 20.0% |
| !!! | TTAATTGTAATGGAACATTA+TGG | - | 50598:26182-26201 | MS.gene072601:intron | 20.0% |
| !!! | TTTTAAGCTTCTTCAAAAAA+TGG | - | 50598:25381-25400 | MS.gene072601:intron | 20.0% |
| ! | AAAAAAACTCGATATTGAGT+TGG | - | 50598:26472-26491 | MS.gene072601:CDS | 25.0% |
| ! | ACTACCCTAAAATATAACAA+AGG | + | 50598:25602-25621 | None:intergenic | 25.0% |
| ! | ATTATAAATAATGCACGTGA+AGG | + | 50598:25839-25858 | None:intergenic | 25.0% |
| ! | ATTGTTGAACCAATAAAATC+TGG | - | 50598:26374-26393 | MS.gene072601:intron | 25.0% |
| ! | CACATTACTTCTTCTAATAT+TGG | - | 50598:25358-25377 | MS.gene072601:intron | 25.0% |
| ! | CTTTCATTTCATTATACACA+TGG | + | 50598:25470-25489 | None:intergenic | 25.0% |
| ! | TATATATGTTCCTCCTAATT+AGG | - | 50598:25065-25084 | MS.gene072601:intron | 25.0% |
| ! | TCCTAATTAGGTCAAAAAAA+TGG | - | 50598:25077-25096 | MS.gene072601:intron | 25.0% |
| ! | TTGCACTTACTTAATTGTAA+TGG | - | 50598:26172-26191 | MS.gene072601:intron | 25.0% |
| ! | TTGTTGAACCAATAAAATCT+GGG | - | 50598:26375-26394 | MS.gene072601:intron | 25.0% |
| ! | TTTGCATCATTATGATCTAT+AGG | - | 50598:27733-27752 | MS.gene072601:intron | 25.0% |
| !! | CATTTTATCTAACACTAACT+TGG | - | 50598:26931-26950 | MS.gene072601:intron | 25.0% |
| !! | TCAATAATTTTGCATTAGGT+AGG | + | 50598:27000-27019 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGACCTAATTAGG+AGG | + | 50598:25078-25097 | None:intergenic | 25.0% |
| !!! | GACACCTTTGTTATATTTTA+GGG | - | 50598:25595-25614 | MS.gene072601:CDS | 25.0% |
| !!! | TCCATTTTTTTGACCTAATT+AGG | + | 50598:25081-25100 | None:intergenic | 25.0% |
| !!! | TTTTTTAAGTTGAGTTGATC+CGG | + | 50598:27608-27627 | None:intergenic | 25.0% |
| AAAAAATAACCGCATCAAAC+CGG | - | 50598:27622-27641 | MS.gene072601:CDS | 30.0% | |
| AAACCAATTCAAAAAGGATC+AGG | - | 50598:25164-25183 | MS.gene072601:intron | 30.0% | |
| AAAGAAATGAAGGAAATGCA+TGG | - | 50598:27040-27059 | MS.gene072601:intron | 30.0% | |
| AACCAAAAAGGAAGATATCA+TGG | + | 50598:27269-27288 | None:intergenic | 30.0% | |
| AACTAAATGATGAAGTCTAG+TGG | + | 50598:27538-27557 | None:intergenic | 30.0% | |
| ACCCATAGCCAAAATAAAAT+GGG | + | 50598:27183-27202 | None:intergenic | 30.0% | |
| ATATATACCCATATATGGGA+GGG | - | 50598:26256-26275 | MS.gene072601:intron | 30.0% | |
| ATCAGAATCAAGTCAACAAA+AGG | + | 50598:26958-26977 | None:intergenic | 30.0% | |
| ATGCAATCAAATCCCAAATA+GGG | + | 50598:25955-25974 | None:intergenic | 30.0% | |
| CAATGTTTAAAAGATCAGAC+AGG | + | 50598:27776-27795 | None:intergenic | 30.0% | |
| TATATATACCCATATATGGG+AGG | - | 50598:26255-26274 | MS.gene072601:intron | 30.0% | |
| TATCATGGTAAGAGTAAAGT+TGG | + | 50598:27254-27273 | None:intergenic | 30.0% | |
| TATGCAATCAAATCCCAAAT+AGG | + | 50598:25956-25975 | None:intergenic | 30.0% | |
| TCAGAATCAAGTCAACAAAA+GGG | + | 50598:26957-26976 | None:intergenic | 30.0% | |
| TGATCCGGTTATTAAAACAT+TGG | + | 50598:27593-27612 | None:intergenic | 30.0% | |
| TTAAGTAAGTGCAAATACAG+AGG | + | 50598:26166-26185 | None:intergenic | 30.0% | |
| ! | AAAACCATAGTGTTATTCAG+TGG | - | 50598:25778-25797 | MS.gene072601:intron | 30.0% |
| ! | ATATATGCATGCCTTTTTAC+CGG | - | 50598:26649-26668 | MS.gene072601:intron | 30.0% |
| ! | TACCATGATATCTTCCTTTT+TGG | - | 50598:27264-27283 | MS.gene072601:intron | 30.0% |
| ! | TAGTAGTTTGTCATAAGCAA+CGG | - | 50598:25573-25592 | MS.gene072601:CDS | 30.0% |
| ! | TATTTGGGATTTGATTGCAT+AGG | - | 50598:25955-25974 | MS.gene072601:intron | 30.0% |
| ! | TATTTTTCCTTCTACTACTG+TGG | - | 50598:27497-27516 | MS.gene072601:intron | 30.0% |
| ! | TCTCTAATCCCAGATTTTAT+TGG | + | 50598:26386-26405 | None:intergenic | 30.0% |
| !! | AGCGAAATACTTTGAAGTTT+GGG | - | 50598:27416-27435 | MS.gene072601:intron | 30.0% |
| !! | GGACACCTTTGTTATATTTT+AGG | - | 50598:25594-25613 | MS.gene072601:CDS | 30.0% |
| !! | TCAAAAAAATGGATTACCGA+TGG | - | 50598:25088-25107 | MS.gene072601:intron | 30.0% |
| !! | TTGTTGACTTGATTCTGATT+TGG | - | 50598:26959-26978 | MS.gene072601:intron | 30.0% |
| !!! | AGCACCAATGTTTTAATAAC+CGG | - | 50598:27586-27605 | MS.gene072601:CDS | 30.0% |
| !!! | ATTTTATTTTGGCTATGGGT+GGG | - | 50598:27183-27202 | MS.gene072601:intron | 30.0% |
| AAAACCAGTTGAGTCAATTG+CGG | + | 50598:27699-27718 | None:intergenic | 35.0% | |
| AAACCGAGGTGAAAGAAATT+CGG | - | 50598:26810-26829 | MS.gene072601:intron | 35.0% | |
| AAAGCCACTGAATAACACTA+TGG | + | 50598:25785-25804 | None:intergenic | 35.0% | |
| AACAGGCAAAAGGATACATT+TGG | + | 50598:27135-27154 | None:intergenic | 35.0% | |
| ACAATTGAGATTGGGATAGT+TGG | - | 50598:26020-26039 | MS.gene072601:CDS | 35.0% | |
| ACAGGCAAAAGGATACATTT+GGG | + | 50598:27134-27153 | None:intergenic | 35.0% | |
| AGCTTCTTCAAAAAATGGGT+TGG | - | 50598:25386-25405 | MS.gene072601:intron | 35.0% | |
| AGTAGTAAGCATGATTCTTC+TGG | - | 50598:25132-25151 | MS.gene072601:intron | 35.0% | |
| CAAAATAAAATGGGCAAGCA+AGG | + | 50598:27174-27193 | None:intergenic | 35.0% | |
| CAAGCAATACAAATTGGCAA+TGG | - | 50598:26859-26878 | MS.gene072601:intron | 35.0% | |
| CAATTCAAAAAGGATCAGGT+TGG | - | 50598:25168-25187 | MS.gene072601:intron | 35.0% | |
| CACCCATAGCCAAAATAAAA+TGG | + | 50598:27184-27203 | None:intergenic | 35.0% | |
| CGTGCACAATTTGAAAATTC+AGG | - | 50598:26760-26779 | MS.gene072601:intron | 35.0% | |
| CTGCAACAAGCAATACAAAT+TGG | - | 50598:26853-26872 | MS.gene072601:intron | 35.0% | |
| GCTATCGTTTCCAAATATAG+AGG | + | 50598:27999-28018 | None:intergenic | 35.0% | |
| GTTCAAAACATGATACCAGT+TGG | + | 50598:27475-27494 | None:intergenic | 35.0% | |
| GTTCTTATGATCACAATCAC+AGG | - | 50598:26900-26919 | MS.gene072601:intron | 35.0% | |
| TCAAGATCTTCCAAAGTTGA+TGG | + | 50598:26694-26713 | None:intergenic | 35.0% | |
| TCAATTATCCAGGAAGAAGA+CGG | + | 50598:25987-26006 | None:intergenic | 35.0% | |
| TCATAAGGAACCATCAACTT+TGG | - | 50598:26681-26700 | MS.gene072601:intron | 35.0% | |
| TGAAAAGGAGCGAGTATTTA+AGG | + | 50598:27884-27903 | None:intergenic | 35.0% | |
| TGAGCAAAAAATTCAAACCG+AGG | - | 50598:26796-26815 | MS.gene072601:intron | 35.0% | |
| TGCAATCAAATCCCAAATAG+GGG | + | 50598:25954-25973 | None:intergenic | 35.0% | |
| TGGCATTAAGGAAACCAAAA+AGG | + | 50598:27281-27300 | None:intergenic | 35.0% | |
| TTATGATCACAATCACAGGA+AGG | - | 50598:26904-26923 | MS.gene072601:intron | 35.0% | |
| TTCCTTATGACATACCAATC+CGG | + | 50598:26671-26690 | None:intergenic | 35.0% | |
| TTGCAAAATTGTGTGCAGAA+TGG | - | 50598:25640-25659 | MS.gene072601:intron | 35.0% | |
| ! | CAACCTGATCCTTTTTGAAT+TGG | + | 50598:25170-25189 | None:intergenic | 35.0% |
| ! | CACCAAAGTCAAAGTACTTT+CGG | + | 50598:26291-26310 | None:intergenic | 35.0% |
| ! | TGCACACAATTTTGCAATTG+TGG | + | 50598:25637-25656 | None:intergenic | 35.0% |
| ! | TGTAAAGCATCTTCAAGTAC+TGG | + | 50598:27839-27858 | None:intergenic | 35.0% |
| ! | TTCCTGCAGTTTTTATTACC+TGG | - | 50598:26718-26737 | MS.gene072601:intron | 35.0% |
| !! | AAAAATGGGTTGGAAAGGAA+AGG | - | 50598:25396-25415 | MS.gene072601:intron | 35.0% |
| !! | AAAACTCGATATTGAGTTGG+AGG | - | 50598:26475-26494 | MS.gene072601:CDS | 35.0% |
| !! | AAAATGGGTTGGAAAGGAAA+GGG | - | 50598:25397-25416 | MS.gene072601:intron | 35.0% |
| !! | AAGTTTGGGTTTTCTGCTAA+AGG | - | 50598:27430-27449 | MS.gene072601:intron | 35.0% |
| !! | CAGCGAAATACTTTGAAGTT+TGG | - | 50598:27415-27434 | MS.gene072601:intron | 35.0% |
| !! | CCTTTTTGAATTGGTTTCTC+CGG | + | 50598:25161-25180 | None:intergenic | 35.0% |
| !! | CTTCAAAAAATGGGTTGGAA+AGG | - | 50598:25391-25410 | MS.gene072601:intron | 35.0% |
| !! | CTTGCTTGCCCATTTTATTT+TGG | - | 50598:27172-27191 | MS.gene072601:intron | 35.0% |
| !! | CTTTTTGAATTGGTTTCTCC+GGG | + | 50598:25160-25179 | None:intergenic | 35.0% |
| !!! | CAATATCGAGTTTTTTTCGC+TGG | + | 50598:26469-26488 | None:intergenic | 35.0% |
| !!! | CATTTTATTTTGGCTATGGG+TGG | - | 50598:27182-27201 | MS.gene072601:intron | 35.0% |
| !!! | GCCCATTTTATTTTGGCTAT+GGG | - | 50598:27179-27198 | MS.gene072601:intron | 35.0% |
| !!! | TGCCCATTTTATTTTGGCTA+TGG | - | 50598:27178-27197 | MS.gene072601:intron | 35.0% |
| AAAGAAGCAAAATCTCCCAG+TGG | - | 50598:27973-27992 | MS.gene072601:CDS | 40.0% | |
| AAATTGGAAGTCGTTGTCGT+CGG | - | 50598:24937-24956 | MS.gene072601:CDS | 40.0% | |
| AGCAGCTATATGCCAGTATT+AGG | + | 50598:25681-25700 | None:intergenic | 40.0% | |
| AGTAGCAGTCTTAGATTCAG+AGG | + | 50598:27377-27396 | None:intergenic | 40.0% | |
| ATAGCGGTATAGTATGTAGC+AGG | + | 50598:25905-25924 | None:intergenic | 40.0% | |
| CACCAGGTAATAAAAACTGC+AGG | + | 50598:26723-26742 | None:intergenic | 40.0% | |
| CCGGAGAAACCAATTCAAAA+AGG | - | 50598:25158-25177 | MS.gene072601:intron | 40.0% | |
| CTGCTGCTATTGCTAAGTAT+GGG | - | 50598:25696-25715 | MS.gene072601:intron | 40.0% | |
| CTTCCGAATTTCTTTCACCT+CGG | + | 50598:26816-26835 | None:intergenic | 40.0% | |
| GACATACCAATCCGGTAAAA+AGG | + | 50598:26663-26682 | None:intergenic | 40.0% | |
| GACTTTCTGAACATGTATGC+AGG | - | 50598:26350-26369 | MS.gene072601:intron | 40.0% | |
| GATTAGAGATCCAAGACTAG+GGG | - | 50598:26397-26416 | MS.gene072601:intron | 40.0% | |
| GCAGCGTTTCAAAGAAATGA+AGG | - | 50598:27030-27049 | MS.gene072601:intron | 40.0% | |
| GGATTAGAGATCCAAGACTA+GGG | - | 50598:26396-26415 | MS.gene072601:intron | 40.0% | |
| GGTATAGTATGTAGCAGGAT+GGG | + | 50598:25900-25919 | None:intergenic | 40.0% | |
| TGCTGCTATTGCTAAGTATG+GGG | - | 50598:25697-25716 | MS.gene072601:intron | 40.0% | |
| TTCCAAATATAGAGGCCACT+GGG | + | 50598:27991-28010 | None:intergenic | 40.0% | |
| TTTCAAATTGTGCACGAAGC+AGG | + | 50598:26756-26775 | None:intergenic | 40.0% | |
| TTTCCAAATATAGAGGCCAC+TGG | + | 50598:27992-28011 | None:intergenic | 40.0% | |
| ! | AAAGCATCCCTCCCATATAT+GGG | + | 50598:26266-26285 | None:intergenic | 40.0% |
| ! | ACTGGGAGATTTTGCTTCTT+TGG | + | 50598:27974-27993 | None:intergenic | 40.0% |
| ! | CTGCAGTTTTTATTACCTGG+TGG | - | 50598:26721-26740 | MS.gene072601:intron | 40.0% |
| ! | TCCAGATCAACGTTTTCAGT+TGG | + | 50598:25310-25329 | None:intergenic | 40.0% |
| !! | ACTTTGAAGAGCATTAGCTG+GGG | + | 50598:26063-26082 | None:intergenic | 40.0% |
| !! | ATACCGCTATCCCATTTTTG+TGG | - | 50598:25915-25934 | MS.gene072601:intron | 40.0% |
| !! | ATCAGCACTGATTGGCATTA+AGG | + | 50598:27293-27312 | None:intergenic | 40.0% |
| !! | ATTTGAGCATCAGCACTGAT+TGG | + | 50598:27301-27320 | None:intergenic | 40.0% |
| !! | CACTTTGAAGAGCATTAGCT+GGG | + | 50598:26064-26083 | None:intergenic | 40.0% |
| !! | TACCGGATTGGTATGTCATA+AGG | - | 50598:26666-26685 | MS.gene072601:intron | 40.0% |
| !! | TCAGTTGGCCTTTGATTTCT+GGG | + | 50598:25295-25314 | None:intergenic | 40.0% |
| !! | TTCAGTTGGCCTTTGATTTC+TGG | + | 50598:25296-25315 | None:intergenic | 40.0% |
| AAATGTGCTCTGCGGAAAAG+GGG | + | 50598:27930-27949 | None:intergenic | 45.0% | |
| ACAGACTCCACAGTAGTAGA+AGG | + | 50598:27507-27526 | None:intergenic | 45.0% | |
| AGTATTAGGCATCACAGCAG+AGG | + | 50598:25667-25686 | None:intergenic | 45.0% | |
| CAAATGTGCTCTGCGGAAAA+GGG | + | 50598:27931-27950 | None:intergenic | 45.0% | |
| CGAGGTGAAAGAAATTCGGA+AGG | - | 50598:26814-26833 | MS.gene072601:intron | 45.0% | |
| CGGTATAGTATGTAGCAGGA+TGG | + | 50598:25901-25920 | None:intergenic | 45.0% | |
| CTGATGCTCAAATGCAGCAA+CGG | - | 50598:27308-27327 | MS.gene072601:intron | 45.0% | |
| CTTCAACTGCAACAAGAGTC+TGG | - | 50598:27331-27350 | MS.gene072601:intron | 45.0% | |
| GATTCAGAGGAAACTGAAGC+TGG | + | 50598:27364-27383 | None:intergenic | 45.0% | |
| GCAGCGTCAAGAAAGAGAAT+TGG | - | 50598:27099-27118 | MS.gene072601:intron | 45.0% | |
| GCCAACTGAAAACGTTGATC+TGG | - | 50598:25306-25325 | MS.gene072601:intron | 45.0% | |
| GCTGCTGCTATTGCTAAGTA+TGG | - | 50598:25695-25714 | MS.gene072601:intron | 45.0% | |
| GGGATTAGAGATCCAAGACT+AGG | - | 50598:26395-26414 | MS.gene072601:intron | 45.0% | |
| GGTCTTGGCAAACATGAACA+AGG | - | 50598:25418-25437 | MS.gene072601:intron | 45.0% | |
| GTTCTATGTTGGCGACGTAA+GGG | - | 50598:27205-27224 | MS.gene072601:intron | 45.0% | |
| TACTGGACTAAGCAAGCACT+GGG | + | 50598:27822-27841 | None:intergenic | 45.0% | |
| TCAAATCCCAAATAGGGGCA+CGG | + | 50598:25949-25968 | None:intergenic | 45.0% | |
| TCTGCTGTGATGCCTAATAC+TGG | - | 50598:25666-25685 | MS.gene072601:intron | 45.0% | |
| TGAACTCAACGCAGGCAAAT+TGG | - | 50598:24921-24940 | MS.gene072601:CDS | 45.0% | |
| TGCTACTGCACTTACAGATC+AGG | - | 50598:27390-27409 | MS.gene072601:intron | 45.0% | |
| TGGCCACAAAAATGGGATAG+CGG | + | 50598:25921-25940 | None:intergenic | 45.0% | |
| TGTTCAGGCATACGATGATG+AGG | - | 50598:25258-25277 | MS.gene072601:intron | 45.0% | |
| TTCGCTTGCCCAGAAATCAA+AGG | - | 50598:25284-25303 | MS.gene072601:intron | 45.0% | |
| TTGACACCAAATGTGCTCTG+CGG | + | 50598:27938-27957 | None:intergenic | 45.0% | |
| ! | ATGGATTACCGATGGACCAA+AGG | - | 50598:25096-25115 | MS.gene072601:intron | 45.0% |
| ! | CATTTTCTCAAACCTGCACC+TGG | - | 50598:26605-26624 | MS.gene072601:intron | 45.0% |
| ! | TAATGCTCTTCAAAGTGCCC+TGG | - | 50598:26067-26086 | MS.gene072601:CDS | 45.0% |
| ! | TGAACCGCAATTGACTCAAC+TGG | - | 50598:27692-27711 | MS.gene072601:intron | 45.0% |
| ! | TGCATGCCTTTTTACCGGAT+TGG | - | 50598:26654-26673 | MS.gene072601:intron | 45.0% |
| !! | CGCCGAAAGTACTTTGACTT+TGG | - | 50598:26286-26305 | MS.gene072601:intron | 45.0% |
| !! | GAAAGCATCCCTCCCATATA+TGG | + | 50598:26267-26286 | None:intergenic | 45.0% |
| !! | GCACTTTGAAGAGCATTAGC+TGG | + | 50598:26065-26084 | None:intergenic | 45.0% |
| !! | TATTGAGTTGGAGGAGACAG+AGG | - | 50598:26484-26503 | MS.gene072601:CDS | 45.0% |
| !! | TCAAATTAAAAAAAAAATAA+AGG | + | 50598:25000-25019 | None:intergenic | 5.0% |
| AAACCACCCAGCAATCTGGA+CGG | + | 50598:27673-27692 | None:intergenic | 50.0% | |
| AAATGCATGGCAGCAGTAGC+CGG | - | 50598:27053-27072 | MS.gene072601:intron | 50.0% | |
| AATAACCGCATCAAACCGGC+CGG | - | 50598:27626-27645 | MS.gene072601:CDS | 50.0% | |
| AATGTGCTCTGCGGAAAAGG+GGG | + | 50598:27929-27948 | None:intergenic | 50.0% | |
| AGAGATCCAAGACTAGGGGT+CGG | - | 50598:26401-26420 | MS.gene072601:intron | 50.0% | |
| AGAGGAGAATGTGAGGAAGC+GGG | - | 50598:26502-26521 | MS.gene072601:CDS | 50.0% | |
| AGCATGATTCTTCTGGTGCC+CGG | - | 50598:25139-25158 | MS.gene072601:intron | 50.0% | |
| AGGAGACAGAGGAGAATGTG+AGG | - | 50598:26495-26514 | MS.gene072601:CDS | 50.0% | |
| ATATGCTGCCTTCTGCTACC+AGG | + | 50598:26626-26645 | None:intergenic | 50.0% | |
| CAGAGGAGAATGTGAGGAAG+CGG | - | 50598:26501-26520 | MS.gene072601:CDS | 50.0% | |
| CCAAATGTGCTCTGCGGAAA+AGG | + | 50598:27932-27951 | None:intergenic | 50.0% | |
| CCCAATTCAACCGGTTGAAC+CGG | + | 50598:27648-27667 | None:intergenic | 50.0% | |
| CCGGTTCAACCGGTTGAATT+GGG | - | 50598:27645-27664 | MS.gene072601:CDS | 50.0% | |
| CTCCCAGTGGCCTCTATATT+TGG | - | 50598:27986-28005 | MS.gene072601:CDS | 50.0% | |
| GATACCAGTTGGACACACCT+TGG | + | 50598:27464-27483 | None:intergenic | 50.0% | |
| GGTTCTATGTTGGCGACGTA+AGG | - | 50598:27204-27223 | MS.gene072601:intron | 50.0% | |
| GGTTGGAAAGGAAAGGGTCT+TGG | - | 50598:25403-25422 | MS.gene072601:intron | 50.0% | |
| GTACTGGACTAAGCAAGCAC+TGG | + | 50598:27823-27842 | None:intergenic | 50.0% | |
| GTTCAAACCACCCAGCAATC+TGG | + | 50598:27677-27696 | None:intergenic | 50.0% | |
| TGCTGCTACCTTTGGTCCAT+CGG | + | 50598:25107-25126 | None:intergenic | 50.0% | |
| TGGACGGTTCCCAATTCAAC+CGG | + | 50598:27657-27676 | None:intergenic | 50.0% | |
| TGGCTTTCTGACCACAACGT+GGG | - | 50598:25798-25817 | MS.gene072601:intron | 50.0% | |
| ! | CAAATCCCAAATAGGGGCAC+GGG | + | 50598:25948-25967 | None:intergenic | 50.0% |
| ! | CCTTTTCCGCAGAGCACATT+TGG | - | 50598:27929-27948 | MS.gene072601:intron | 50.0% |
| ! | GCTATGGGTGGGTTCTATGT+TGG | - | 50598:27194-27213 | MS.gene072601:intron | 50.0% |
| ! | GGGTGACTGGCCACAAAAAT+GGG | + | 50598:25928-25947 | None:intergenic | 50.0% |
| !! | CTCGCTTTTGCCTATCATCC+CGG | + | 50598:27075-27094 | None:intergenic | 50.0% |
| !! | TGCTAAAGGCACTGCTTCCA+AGG | - | 50598:27444-27463 | MS.gene072601:intron | 50.0% |
| AACCTGCACCTGGTAGCAGA+AGG | - | 50598:26615-26634 | MS.gene072601:intron | 55.0% | |
| AATGCATGGCAGCAGTAGCC+GGG | - | 50598:27054-27073 | MS.gene072601:intron | 55.0% | |
| ACTGCTGCTGCTGCTACCTT+TGG | + | 50598:25115-25134 | None:intergenic | 55.0% | |
| AGTCACCCGTGCCCCTATTT+GGG | - | 50598:25940-25959 | MS.gene072601:intron | 55.0% | |
| AGTCGCAGTGAACTCAACGC+AGG | - | 50598:24913-24932 | MS.gene072601:CDS | 55.0% | |
| ATGCACGTGAAGGAGCTCAC+CGG | + | 50598:25829-25848 | None:intergenic | 55.0% | |
| ATTCAACCGGTTGAACCGGC+CGG | + | 50598:27644-27663 | None:intergenic | 55.0% | |
| GACTTCCTCACCGTGTCAGA+CGG | + | 50598:24967-24986 | None:intergenic | 55.0% | |
| GCTTCCAAGGTGTGTCCAAC+TGG | - | 50598:27457-27476 | MS.gene072601:intron | 55.0% | |
| GGCTTTCTGACCACAACGTG+GGG | - | 50598:25799-25818 | MS.gene072601:intron | 55.0% | |
| GGTGTCTTCCGTCTTCTTCC+TGG | - | 50598:25976-25995 | MS.gene072601:intron | 55.0% | |
| GTGGCTTTCTGACCACAACG+TGG | - | 50598:25797-25816 | MS.gene072601:intron | 55.0% | |
| TGGGAACCGTCCAGATTGCT+GGG | - | 50598:27664-27683 | MS.gene072601:intron | 55.0% | |
| TTGGGAACCGTCCAGATTGC+TGG | - | 50598:27663-27682 | MS.gene072601:intron | 55.0% | |
| ! | ATCAAACCGGCCGGTTCAAC+CGG | - | 50598:27635-27654 | MS.gene072601:CDS | 55.0% |
| ! | CGGGTGACTGGCCACAAAAA+TGG | + | 50598:25929-25948 | None:intergenic | 55.0% |
| ! | GCCGGTTCAACCGGTTGAAT+TGG | - | 50598:27644-27663 | MS.gene072601:CDS | 55.0% |
| !! | GGACTAAGCAAGCACTGGGT+TGG | + | 50598:27818-27837 | None:intergenic | 55.0% |
| !! | TTGAACCGGCCGGTTTGATG+CGG | + | 50598:27634-27653 | None:intergenic | 55.0% |
| AGCAGGCAGAAGAAGCCACC+AGG | + | 50598:26739-26758 | None:intergenic | 60.0% | |
| CAGTCACCCGTGCCCCTATT+TGG | - | 50598:25939-25958 | MS.gene072601:intron | 60.0% | |
| GAACCGTCCAGATTGCTGGG+TGG | - | 50598:27667-27686 | MS.gene072601:intron | 60.0% | |
| GACCACAACGTGGGGTTTGC+CGG | - | 50598:25807-25826 | MS.gene072601:CDS | 60.0% | |
| GCAGCAGTAGCCGGGATGAT+AGG | - | 50598:27062-27081 | MS.gene072601:intron | 60.0% | |
| GGAGAATGTGAGGAAGCGGG+AGG | - | 50598:26505-26524 | MS.gene072601:CDS | 60.0% | |
| TGCCTTCTGCTACCAGGTGC+AGG | + | 50598:26620-26639 | None:intergenic | 60.0% | |
| TGCTTGCCGACCCCTAGTCT+TGG | + | 50598:26410-26429 | None:intergenic | 60.0% | |
| TGGAAGTCGTTGTCGTCGGC+CGG | - | 50598:24941-24960 | MS.gene072601:CDS | 60.0% | |
| ! | CAAATAGGGGCACGGGTGAC+TGG | + | 50598:25941-25960 | None:intergenic | 60.0% |
| CACCGGCAAACCCCACGTTG+TGG | + | 50598:25812-25831 | None:intergenic | 65.0% | |
| TCCTCACCGTGTCAGACGGC+CGG | + | 50598:24963-24982 | None:intergenic | 65.0% | |
| CGTCGGCCGGCCGTCTGACA+CGG | - | 50598:24954-24973 | MS.gene072601:CDS | 75.0% | |
| GCCGGCCGTCTGACACGGTG+AGG | - | 50598:24959-24978 | MS.gene072601:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50598 | gene | 24909 | 28030 | 24909 | ID=MS.gene072601 |
| 50598 | mRNA | 24909 | 28030 | 24909 | ID=MS.gene072601.t1;Parent=MS.gene072601 |
| 50598 | exon | 27964 | 28030 | 27964 | ID=MS.gene072601.t1.exon1;Parent=MS.gene072601.t1 |
| 50598 | CDS | 27964 | 28030 | 27964 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 27754 | 27852 | 27754 | ID=MS.gene072601.t1.exon2;Parent=MS.gene072601.t1 |
| 50598 | CDS | 27754 | 27852 | 27754 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 27500 | 27674 | 27500 | ID=MS.gene072601.t1.exon3;Parent=MS.gene072601.t1 |
| 50598 | CDS | 27500 | 27674 | 27500 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 26413 | 26567 | 26413 | ID=MS.gene072601.t1.exon4;Parent=MS.gene072601.t1 |
| 50598 | CDS | 26413 | 26567 | 26413 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 26014 | 26157 | 26014 | ID=MS.gene072601.t1.exon5;Parent=MS.gene072601.t1 |
| 50598 | CDS | 26014 | 26157 | 26014 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 25802 | 25905 | 25802 | ID=MS.gene072601.t1.exon6;Parent=MS.gene072601.t1 |
| 50598 | CDS | 25802 | 25905 | 25802 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 25474 | 25633 | 25474 | ID=MS.gene072601.t1.exon7;Parent=MS.gene072601.t1 |
| 50598 | CDS | 25474 | 25633 | 25474 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| 50598 | exon | 24909 | 24998 | 24909 | ID=MS.gene072601.t1.exon8;Parent=MS.gene072601.t1 |
| 50598 | CDS | 24909 | 24998 | 24909 | ID=cds.MS.gene072601.t1;Parent=MS.gene072601.t1 |
| Gene Sequence |
| Protein sequence |
