AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072607


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072607.t1 MTR_7g111280 95.059 425 14 2 1 424 1 419 0.0 842
MS.gene072607.t1 MTR_1g085070 72.877 424 91 5 1 423 1 401 0.0 630
MS.gene072607.t1 MTR_7g110900 71.390 367 105 0 58 424 49 415 0.0 589
MS.gene072607.t1 MTR_7g110900 71.585 366 104 0 58 423 49 414 0.0 586
MS.gene072607.t1 MTR_1g085620 69.430 386 116 1 40 423 17 402 0.0 584
MS.gene072607.t1 MTR_4g124320 65.176 425 130 2 3 424 12 421 0.0 583
MS.gene072607.t1 MTR_1g085620 71.380 297 85 0 127 423 1 297 1.04e-167 473
MS.gene072607.t1 MTR_8g072010 51.733 375 177 2 51 423 19 391 3.16e-148 427
MS.gene072607.t1 MTR_8g072000 51.771 367 175 1 59 423 26 392 4.48e-146 421
MS.gene072607.t1 MTR_8g072000 51.771 367 175 1 59 423 57 423 1.45e-145 421
MS.gene072607.t1 MTR_1g101000 53.930 369 165 3 59 422 37 405 1.24e-144 418
MS.gene072607.t1 MTR_4g124320 64.401 309 92 2 3 308 12 305 2.32e-144 414
MS.gene072607.t1 MTR_1g101000 53.930 369 165 3 59 422 37 405 2.51e-144 418
MS.gene072607.t1 MTR_1g101020 53.659 369 166 3 59 422 37 405 2.12e-142 412
MS.gene072607.t1 MTR_7g060760 50.409 367 176 2 60 424 56 418 6.12e-139 404
MS.gene072607.t1 MTR_5g042650 50.137 365 176 2 60 422 28 388 4.51e-137 398
MS.gene072607.t1 MTR_1g101000 52.819 337 154 3 59 390 37 373 6.81e-126 370
MS.gene072607.t1 MTR_1g036590 60.000 80 32 0 242 321 271 350 2.08e-24 104
MS.gene072607.t1 MTR_7g006750 50.000 94 47 0 200 293 467 560 3.28e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072607.t1 AT3G05910 69.100 411 126 1 13 423 5 414 0.0 620
MS.gene072607.t1 AT5G26670 68.868 424 122 3 1 423 1 415 0.0 613
MS.gene072607.t1 AT1G57590 65.962 426 131 4 1 423 28 442 0.0 591
MS.gene072607.t1 AT3G62060 67.277 382 121 2 46 423 37 418 0.0 566
MS.gene072607.t1 AT3G62060 67.277 382 121 2 46 423 37 418 0.0 564
MS.gene072607.t1 AT2G46930 60.382 419 149 2 5 423 14 415 0.0 555
MS.gene072607.t1 AT5G26670 72.391 297 82 0 127 423 1 297 2.64e-169 476
MS.gene072607.t1 AT5G26670 72.391 297 82 0 127 423 1 297 2.64e-169 476
MS.gene072607.t1 AT5G26670 72.391 297 82 0 127 423 1 297 2.64e-169 476
MS.gene072607.t1 AT1G09550 59.128 367 146 2 39 402 17 382 3.74e-163 464
MS.gene072607.t1 AT4G19420 54.377 377 170 1 50 424 14 390 3.59e-156 447
MS.gene072607.t1 AT4G19420 54.377 377 170 1 50 424 14 390 3.59e-156 447
MS.gene072607.t1 AT5G23870 54.076 368 163 4 61 422 35 402 6.85e-150 432
MS.gene072607.t1 AT5G23870 54.076 368 163 4 61 422 35 402 6.85e-150 432
MS.gene072607.t1 AT5G23870 54.076 368 163 4 61 422 35 402 1.16e-149 432
MS.gene072607.t1 AT4G19420 50.000 412 169 2 50 424 14 425 1.17e-149 432
MS.gene072607.t1 AT5G23870 54.076 368 163 4 61 422 35 402 1.40e-149 432
MS.gene072607.t1 AT3G05910 66.337 303 101 1 13 315 5 306 2.41e-149 426
MS.gene072607.t1 AT3G09410 47.418 426 207 4 2 424 16 427 7.05e-144 417
MS.gene072607.t1 AT3G09405 46.190 420 200 5 2 418 13 409 6.47e-136 396
MS.gene072607.t1 AT5G45280 49.307 361 180 2 61 418 24 384 5.67e-135 393
MS.gene072607.t1 AT4G19410 49.030 361 181 2 61 418 24 384 2.01e-134 391
MS.gene072607.t1 AT4G19410 49.128 344 173 1 61 402 24 367 2.85e-127 378
MS.gene072607.t1 AT3G09410 46.684 392 192 4 2 390 16 393 1.26e-125 369
MS.gene072607.t1 AT5G45280 52.128 282 133 1 61 340 24 305 4.01e-109 326
MS.gene072607.t1 AT3G09405 49.175 303 149 2 119 418 2 302 3.06e-108 322
MS.gene072607.t1 AT4G19420 56.522 230 98 1 50 277 14 243 2.87e-90 275

Find 105 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCACCAACTTGGTTTA+TGG 0.071657 7.4:-4865195 MS.gene072607:CDS
AATTCAGAGGACAGCGAATT+TGG 0.187648 7.4:-4864041 MS.gene072607:CDS
GCTAATCAGGCTCTTCTTTC+CGG 0.191020 7.4:-4863976 MS.gene072607:CDS
ATACATCACCTTGCAGAAAT+TGG 0.207626 7.4:+4862924 None:intergenic
CAGACAATTCTCCGGTTATT+AGG 0.224305 7.4:-4862682 MS.gene072607:CDS
AATGGAAGATTTGATGTTAA+AGG 0.242008 7.4:-4864010 MS.gene072607:CDS
TGTGATGGTGGCTCATTTAC+TGG 0.246928 7.4:-4864428 MS.gene072607:CDS
TACCATTTGCATCGTGGATA+TGG 0.251407 7.4:-4864910 MS.gene072607:CDS
TTGGTTTATGGGTTTGAATT+AGG 0.260228 7.4:-4865183 MS.gene072607:CDS
TATGGGTTTGAATTAGGATA+TGG 0.270691 7.4:-4865177 MS.gene072607:CDS
TTATCACCAACTTGGTTTAT+GGG 0.298292 7.4:-4865194 MS.gene072607:CDS
TCAATACTGCTTATGATTCA+TGG 0.299224 7.4:-4863283 MS.gene072607:CDS
TGAAGAACTCTTTCTGTTAG+AGG 0.300195 7.4:-4865127 MS.gene072607:CDS
CAGTTGGCTTGTTAATTTAG+AGG 0.330535 7.4:-4864875 MS.gene072607:intron
AATTATAGGATTGATATATC+TGG 0.336116 7.4:-4863733 MS.gene072607:intron
TAGCAGCTGCATTGTGGATA+AGG 0.344441 7.4:+4865043 None:intergenic
ATGGAAGATTTGATGTTAAA+GGG 0.348581 7.4:-4864009 MS.gene072607:CDS
CACTTCACTTTAGTAGTCCT+TGG 0.363666 7.4:+4863895 None:intergenic
CCTTGCAGAAATTGGATTTG+TGG 0.382065 7.4:+4862932 None:intergenic
TTCACCTTGTTCCTAATAAC+CGG 0.384001 7.4:+4862671 None:intergenic
TGATAATACATGTCACCATT+TGG 0.393033 7.4:-4862424 MS.gene072607:CDS
CAGCAGATCCCCATGGCTAT+TGG 0.396660 7.4:-4862991 MS.gene072607:CDS
CTTCTTTCCGGATGTTCAGC+GGG 0.402249 7.4:-4863964 MS.gene072607:CDS
ATTCAGAGGACAGCGAATTT+GGG 0.404061 7.4:-4864040 MS.gene072607:CDS
CAACACCACTGTACATATTC+CGG 0.405411 7.4:+4863698 None:intergenic
TTACTAAGTATTCCTGTGAA+TGG 0.407702 7.4:+4864610 None:intergenic
ATGTATCTTGCCTCTCGGTT+TGG 0.417685 7.4:+4862711 None:intergenic
AGCAGCTGCATTGTGGATAA+GGG 0.417871 7.4:+4865044 None:intergenic
GCATCCTTTCTTGAGGGTAA+TGG 0.436523 7.4:-4865090 MS.gene072607:CDS
TAGGTAATTGCTTTAGCTGT+TGG 0.437321 7.4:-4862501 MS.gene072607:CDS
TTGGTTTCTTGCAGTGTGCT+TGG 0.438110 7.4:-4864950 MS.gene072607:intron
AATATGTACAGTGGTGTTGT+AGG 0.448233 7.4:-4863694 MS.gene072607:CDS
TAGGCCACCCGCTGAACATC+CGG 0.448568 7.4:+4863957 None:intergenic
GCGAATTTGGGCAGCTGCAA+TGG 0.455500 7.4:-4864028 MS.gene072607:CDS
TACTGGAGATGGTGAAGATC+AGG 0.456973 7.4:-4864411 MS.gene072607:intron
TTTCTTGCAGTGTGCTTGGA+TGG 0.462046 7.4:-4864946 MS.gene072607:intron
TTGCTTTAGCTGTTGGAGAC+TGG 0.466598 7.4:-4862494 MS.gene072607:CDS
GTCTCTTGAATACAGGGTTC+AGG 0.466892 7.4:-4862814 MS.gene072607:intron
AATAAACCTGAAGAAAATCC+AGG 0.477981 7.4:-4864589 MS.gene072607:intron
ATCCACAATGCAGCTGCTAA+AGG 0.480879 7.4:-4865039 MS.gene072607:CDS
GTGAAGTGTCTTAGCGATGC+AGG 0.481043 7.4:-4863880 MS.gene072607:CDS
ATTTCCATTACCCTCAAGAA+AGG 0.487996 7.4:+4865086 None:intergenic
TTCTCAAGATCAAACAAGAA+TGG 0.489491 7.4:-4862764 MS.gene072607:CDS
TTGCATCGTGGATATGGATC+AGG 0.495342 7.4:-4864904 MS.gene072607:CDS
AATTTCGAGGTCTCTTTCCA+AGG 0.497114 7.4:-4863912 MS.gene072607:CDS
ATCATCATTATACATGGAAA+AGG 0.501178 7.4:-4864638 MS.gene072607:CDS
TGGCTCAACTGAAAACCAAA+TGG 0.503838 7.4:+4862409 None:intergenic
CTCCTTTAGCAGCTGCATTG+TGG 0.510189 7.4:+4865037 None:intergenic
TGCATTCATGCCAATAGCCA+TGG 0.510756 7.4:+4862981 None:intergenic
ATCCATATCCACGATGCAAA+TGG 0.517887 7.4:+4864908 None:intergenic
CATGCAGCATCCTTTCTTGA+GGG 0.518276 7.4:-4865096 MS.gene072607:CDS
ATACACTGTGATGAATTTCG+AGG 0.519543 7.4:-4863925 MS.gene072607:CDS
ACCCAGAAAAGTTTAGCCAT+TGG 0.528435 7.4:+4865237 None:intergenic
TAGCCATGGGGATCTGCTGA+TGG 0.530490 7.4:+4862995 None:intergenic
AGGACTTGTTATCACCAACT+TGG 0.533797 7.4:-4865202 MS.gene072607:CDS
CCACGATGCAAATGGTAACC+AGG 0.545374 7.4:+4864916 None:intergenic
GCATTCATGCCAATAGCCAT+GGG 0.548266 7.4:+4862982 None:intergenic
TATCTGGCGAGCGCACCCTC+CGG 0.549827 7.4:-4863717 MS.gene072607:CDS
GTAAAGCTTCGTTATTGTGA+TGG 0.550885 7.4:-4864443 MS.gene072607:CDS
CAGTGGTGTTGTAGGGATGC+AGG 0.553790 7.4:-4863686 MS.gene072607:intron
TGCTTGGATGGAACATTACC+TGG 0.558834 7.4:-4864934 MS.gene072607:CDS
TTCAAACCCATAAACCAAGT+TGG 0.559248 7.4:+4865188 None:intergenic
AATGCAGCTGCTAAAGGAGC+AGG 0.563358 7.4:-4865033 MS.gene072607:intron
AAACCGAGAGGCAAGATACA+TGG 0.565165 7.4:-4862709 MS.gene072607:CDS
GCGTGGATCATCATTATACA+TGG 0.565339 7.4:-4864644 MS.gene072607:CDS
TACTGCTTATGATTCATGGC+AGG 0.565480 7.4:-4863279 MS.gene072607:intron
TCTTCTTTCCGGATGTTCAG+CGG 0.565522 7.4:-4863965 MS.gene072607:CDS
GTGGCCTTGTGCATTTAGCA+TGG 0.567737 7.4:+4862951 None:intergenic
GTGTTTATCGCAAGAAAACA+CGG 0.570483 7.4:-4864666 MS.gene072607:CDS
ACATGCAGCATCCTTTCTTG+AGG 0.576567 7.4:-4865097 MS.gene072607:CDS
CACAGTGTATAATAGTAGCT+AGG 0.579094 7.4:+4863938 None:intergenic
GGTGGCTCATTTACTGGAGA+TGG 0.581728 7.4:-4864422 MS.gene072607:CDS
TCTAACTGTCATCAGGGAGG+TGG 0.582270 7.4:-4864712 MS.gene072607:intron
ACACTGGCAATCAAATTCTG+AGG 0.583315 7.4:+4863326 None:intergenic
ATGATTATGATTACCGAGGT+AGG 0.584023 7.4:+4863491 None:intergenic
CATGTATTATCACAAGGGTA+AGG 0.587582 7.4:+4862435 None:intergenic
ATGGATCAGGAGCAAACAGT+TGG 0.589134 7.4:-4864891 MS.gene072607:CDS
CACTGGCAATCAAATTCTGA+GGG 0.591267 7.4:+4863327 None:intergenic
CTTTCCGGATGTTCAGCGGG+TGG 0.596559 7.4:-4863961 MS.gene072607:CDS
GAAAAGGAGATACCATTCAC+AGG 0.596897 7.4:-4864622 MS.gene072607:CDS
AAACCATGTATCTTGCCTCT+CGG 0.596928 7.4:+4862706 None:intergenic
AAGCTTCGTTATTGTGATGG+TGG 0.600562 7.4:-4864440 MS.gene072607:CDS
TGGTGACATGTATTATCACA+AGG 0.608610 7.4:+4862429 None:intergenic
TGAAGTGTCTTAGCGATGCA+GGG 0.608865 7.4:-4863879 MS.gene072607:CDS
CCTGGTTACCATTTGCATCG+TGG 0.609738 7.4:-4864916 MS.gene072607:CDS
TGATTACCGAGGTAGGATCA+AGG 0.612410 7.4:+4863498 None:intergenic
ATATGTACAGTGGTGTTGTA+GGG 0.613917 7.4:-4863693 MS.gene072607:CDS
CCATGGGGATCTGCTGATGG+AGG 0.617825 7.4:+4862998 None:intergenic
ACTGTCATCAGGGAGGTGGA+TGG 0.626588 7.4:-4864708 MS.gene072607:intron
AGGGTGAGTCCTACGAGCAG+AGG 0.626989 7.4:+4865063 None:intergenic
TTCTCCGGTTATTAGGAACA+AGG 0.636482 7.4:-4862675 MS.gene072607:intron
CACCACTGTACATATTCCGG+AGG 0.638914 7.4:+4863701 None:intergenic
AATGGAAATCCTCTGCTCGT+AGG 0.640827 7.4:-4865072 MS.gene072607:CDS
CCTCCATCAGCAGATCCCCA+TGG 0.647413 7.4:-4862998 MS.gene072607:CDS
CCACAAATCCAATTTCTGCA+AGG 0.649408 7.4:-4862932 MS.gene072607:intron
TAATCACCTTGATCCTACCT+CGG 0.661838 7.4:-4863504 MS.gene072607:intron
GAAGCAGAACTGCAATTCAG+AGG 0.664323 7.4:-4864054 MS.gene072607:CDS
ACCACTGTACATATTCCGGA+GGG 0.680732 7.4:+4863702 None:intergenic
TATCGCAAGAAAACACGGCG+TGG 0.683797 7.4:-4864661 MS.gene072607:CDS
AGGTGATTAGTACAAATCTG+TGG 0.684849 7.4:+4863518 None:intergenic
TCGCTCACTGCCAAACCGAG+AGG 0.692246 7.4:-4862721 MS.gene072607:CDS
TAAACCATGCTAAATGCACA+AGG 0.692567 7.4:-4862955 MS.gene072607:CDS
GGTGACATGTATTATCACAA+GGG 0.699950 7.4:+4862430 None:intergenic
ACCCTCCGGAATATGTACAG+TGG 0.725020 7.4:-4863703 MS.gene072607:CDS
CATTCATGCCAATAGCCATG+GGG 0.744235 7.4:+4862983 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTAAAATTTGATATTT+TGG - chr7.4:4863348-4863367 MS.gene072607:intron 10.0%
!!! ATTAATTTTTTTTGTAATGA+TGG + chr7.4:4863861-4863880 None:intergenic 10.0%
!!! TATGTAAAATTTGATATTTT+GGG - chr7.4:4863349-4863368 MS.gene072607:intron 10.0%
!!! TTAGAAATAATTAAAGTTTT+AGG - chr7.4:4862909-4862928 MS.gene072607:intron 10.0%
!! AAATAGTTTATATTCTTTCA+TGG - chr7.4:4864021-4864040 MS.gene072607:CDS 15.0%
!! AATGAAATGATTAAATGTAT+CGG - chr7.4:4864519-4864538 MS.gene072607:intron 15.0%
!! ACATTTAATCATTTCATTAT+CGG + chr7.4:4864517-4864536 None:intergenic 15.0%
!! ATGTAAAAATTAATTACACT+AGG - chr7.4:4863268-4863287 MS.gene072607:intron 15.0%
!! CAAAAATATTTAATATTGAG+AGG + chr7.4:4862680-4862699 None:intergenic 15.0%
!! TTATTACTATATTATTCAGT+TGG - chr7.4:4864795-4864814 MS.gene072607:intron 15.0%
!!! CTCTCAATATTAAATATTTT+TGG - chr7.4:4862678-4862697 MS.gene072607:CDS 15.0%
!!! TTGCTTTTTTAATTTGTTAT+AGG - chr7.4:4863119-4863138 MS.gene072607:intron 15.0%
!! AAATAATAGTATATGAGATG+TGG - chr7.4:4864444-4864463 MS.gene072607:CDS 20.0%
!! AATTATAGGATTGATATATC+TGG - chr7.4:4863914-4863933 MS.gene072607:CDS 20.0%
!! AATTGAATGAAAATTAAACC+TGG + chr7.4:4863079-4863098 None:intergenic 20.0%
!! ATAAACTATTTGTAATAAGC+TGG + chr7.4:4864012-4864031 None:intergenic 20.0%
!! ATATTTAATATTGAGAGGAA+AGG + chr7.4:4862675-4862694 None:intergenic 20.0%
!! TTTGTTTGCATTGAAATTAT+AGG - chr7.4:4863900-4863919 MS.gene072607:CDS 20.0%
!!! AATTTGCAGATTTTTTCAAT+TGG - chr7.4:4863175-4863194 MS.gene072607:intron 20.0%
!!! ACTTTTCTTTTCTTTTCTTT+TGG - chr7.4:4862819-4862838 MS.gene072607:intron 20.0%
!!! AGTTAACTTTTATGCAAAAA+AGG + chr7.4:4863413-4863432 None:intergenic 20.0%
! AATATCCTAAGTTTGTCAAT+TGG - chr7.4:4864393-4864412 MS.gene072607:intron 25.0%
! AATGGAAGATTTGATGTTAA+AGG - chr7.4:4863637-4863656 MS.gene072607:intron 25.0%
! ATCATCATTATACATGGAAA+AGG - chr7.4:4863009-4863028 MS.gene072607:CDS 25.0%
! ATGGAAGATTTGATGTTAAA+GGG - chr7.4:4863638-4863657 MS.gene072607:intron 25.0%
! ATTATTTGTTTGATCACTGT+AGG - chr7.4:4864089-4864108 MS.gene072607:intron 25.0%
! TGAAAAAGGAGTAATAAAAC+AGG + chr7.4:4864291-4864310 None:intergenic 25.0%
!! ATTTTCAGTTAATTATGCCA+TGG + chr7.4:4862887-4862906 None:intergenic 25.0%
!! TACATACATTGACTAAATGT+AGG - chr7.4:4865127-4865146 MS.gene072607:CDS 25.0%
!! TTTTATGCAAAAAAGGATAC+AGG + chr7.4:4863406-4863425 None:intergenic 25.0%
!! TTTTGTAATGATGGTAGAAA+TGG + chr7.4:4863852-4863871 None:intergenic 25.0%
!!! TAGAGGTATTTCTTCTTATT+TGG - chr7.4:4862789-4862808 MS.gene072607:CDS 25.0%
!!! TTCAGTTTTGTCAAATAGTT+AGG - chr7.4:4864190-4864209 MS.gene072607:intron 25.0%
AACATTGGACACAATACTAA+CGG - chr7.4:4864477-4864496 MS.gene072607:intron 30.0%
AATAAACCTGAAGAAAATCC+AGG - chr7.4:4863058-4863077 MS.gene072607:intron 30.0%
ACATGGTTGTAACATTTGTA+AGG - chr7.4:4864056-4864075 MS.gene072607:CDS 30.0%
AGGTTGTATTGTTTGTTTGT+AGG + chr7.4:4862645-4862664 None:intergenic 30.0%
ATCAATGATTATGATTACCG+AGG + chr7.4:4864163-4864182 None:intergenic 30.0%
TATGGGTTTGAATTAGGATA+TGG - chr7.4:4862470-4862489 MS.gene072607:CDS 30.0%
TCAATACTGCTTATGATTCA+TGG - chr7.4:4864364-4864383 MS.gene072607:intron 30.0%
TGATAATACATGTCACCATT+TGG - chr7.4:4865223-4865242 MS.gene072607:CDS 30.0%
TTACTAAGTATTCCTGTGAA+TGG + chr7.4:4863040-4863059 None:intergenic 30.0%
TTATCACCAACTTGGTTTAT+GGG - chr7.4:4862453-4862472 MS.gene072607:CDS 30.0%
TTCTCAAGATCAAACAAGAA+TGG - chr7.4:4864883-4864902 MS.gene072607:CDS 30.0%
TTGGTTTATGGGTTTGAATT+AGG - chr7.4:4862464-4862483 MS.gene072607:CDS 30.0%
TTTAATATTGAGAGGAAAGG+TGG + chr7.4:4862672-4862691 None:intergenic 30.0%
! ATTAAACCTGGATTTTCTTC+AGG + chr7.4:4863067-4863086 None:intergenic 30.0%
! CATGGCTATGTTATTTAACA+TGG - chr7.4:4864039-4864058 MS.gene072607:CDS 30.0%
! CTTTATTTACGTATGTTGTC+TGG - chr7.4:4863562-4863581 MS.gene072607:intron 30.0%
AAAAAGTGGTGTTCTAACAC+TGG + chr7.4:4864340-4864359 None:intergenic 35.0%
AATGATGGTAGAAATGGCAT+TGG + chr7.4:4863846-4863865 None:intergenic 35.0%
AGGATTTCTAACTGTCATCA+GGG - chr7.4:4862929-4862948 MS.gene072607:intron 35.0%
AGGTGATTAGTACAAATCTG+TGG + chr7.4:4864132-4864151 None:intergenic 35.0%
ATACACTGTGATGAATTTCG+AGG - chr7.4:4863722-4863741 MS.gene072607:CDS 35.0%
ATACATCACCTTGCAGAAAT+TGG + chr7.4:4864726-4864745 None:intergenic 35.0%
ATGAGCAACAATAACATGAG+AGG + chr7.4:4863151-4863170 None:intergenic 35.0%
ATGATTATGATTACCGAGGT+AGG + chr7.4:4864159-4864178 None:intergenic 35.0%
ATTTCCATTACCCTCAAGAA+AGG + chr7.4:4862564-4862583 None:intergenic 35.0%
CAAAAAAGGATACAGGTCTA+CGG + chr7.4:4863399-4863418 None:intergenic 35.0%
CAAGTCATGTATCTCAACAA+TGG + chr7.4:4863498-4863517 None:intergenic 35.0%
CACAGTGTATAATAGTAGCT+AGG + chr7.4:4863712-4863731 None:intergenic 35.0%
CATGTATTATCACAAGGGTA+AGG + chr7.4:4865215-4865234 None:intergenic 35.0%
CTTGACTGAATCTGATAACA+AGG + chr7.4:4864622-4864641 None:intergenic 35.0%
GACTACCAATTGACAAACTT+AGG + chr7.4:4864401-4864420 None:intergenic 35.0%
GGTGACATGTATTATCACAA+GGG + chr7.4:4865220-4865239 None:intergenic 35.0%
GTAAAGCTTCGTTATTGTGA+TGG - chr7.4:4863204-4863223 MS.gene072607:intron 35.0%
GTGTTTATCGCAAGAAAACA+CGG - chr7.4:4862981-4863000 MS.gene072607:CDS 35.0%
GTTATCACCAACTTGGTTTA+TGG - chr7.4:4862452-4862471 MS.gene072607:CDS 35.0%
TAAACCATGCTAAATGCACA+AGG - chr7.4:4864692-4864711 MS.gene072607:CDS 35.0%
TAGGATTTCTAACTGTCATC+AGG - chr7.4:4862928-4862947 MS.gene072607:intron 35.0%
TAGGTAACTGACTAACAAAC+TGG - chr7.4:4863287-4863306 MS.gene072607:CDS 35.0%
TAGGTAATTGCTTTAGCTGT+TGG - chr7.4:4865146-4865165 MS.gene072607:CDS 35.0%
TGAAGAACTCTTTCTGTTAG+AGG - chr7.4:4862520-4862539 MS.gene072607:intron 35.0%
TGGTATTCTTGTGATTAGTG+TGG + chr7.4:4863992-4864011 None:intergenic 35.0%
TGGTGACATGTATTATCACA+AGG + chr7.4:4865221-4865240 None:intergenic 35.0%
TTAGTACCATTCATTGCAAG+TGG - chr7.4:4864751-4864770 MS.gene072607:intron 35.0%
TTCAAACCCATAAACCAAGT+TGG + chr7.4:4862462-4862481 None:intergenic 35.0%
TTCACCTTGTTCCTAATAAC+CGG + chr7.4:4864979-4864998 None:intergenic 35.0%
! ATGGTTTTCAGACAATTCTC+CGG - chr7.4:4864957-4864976 MS.gene072607:intron 35.0%
! GCAGTATTGAGAAGAAAAAG+TGG + chr7.4:4864354-4864373 None:intergenic 35.0%
! TTCTGGGTTTTCATTGCAAT+AGG - chr7.4:4862425-4862444 MS.gene072607:CDS 35.0%
! TTTTCTCCACTTGCAATGAA+TGG + chr7.4:4864760-4864779 None:intergenic 35.0%
!! AATATGTACAGTGGTGTTGT+AGG - chr7.4:4863953-4863972 MS.gene072607:CDS 35.0%
!! ATATGTACAGTGGTGTTGTA+GGG - chr7.4:4863954-4863973 MS.gene072607:CDS 35.0%
!! CAGTTGGCTTGTTAATTTAG+AGG - chr7.4:4862772-4862791 MS.gene072607:CDS 35.0%
!!! TTTTGATCGAGAAGGTGTTA+AGG - chr7.4:4865178-4865197 MS.gene072607:CDS 35.0%
AAACCATGTATCTTGCCTCT+CGG + chr7.4:4864944-4864963 None:intergenic 40.0%
AAGCTTCGTTATTGTGATGG+TGG - chr7.4:4863207-4863226 MS.gene072607:intron 40.0%
AATTCAGAGGACAGCGAATT+TGG - chr7.4:4863606-4863625 MS.gene072607:intron 40.0%
AATTTCGAGGTCTCTTTCCA+AGG - chr7.4:4863735-4863754 MS.gene072607:intron 40.0%
ACACTGGCAATCAAATTCTG+AGG + chr7.4:4864324-4864343 None:intergenic 40.0%
ACATGCATGCATATATGCCA+TGG - chr7.4:4862867-4862886 MS.gene072607:intron 40.0%
AGCAGAAACTTGTAAGAGCA+AGG - chr7.4:4863451-4863470 MS.gene072607:intron 40.0%
ATCCATATCCACGATGCAAA+TGG + chr7.4:4862742-4862761 None:intergenic 40.0%
ATTCAGAGGACAGCGAATTT+GGG - chr7.4:4863607-4863626 MS.gene072607:intron 40.0%
ATTTCTAACTGTCATCAGGG+AGG - chr7.4:4862932-4862951 MS.gene072607:intron 40.0%
CAACACCACTGTACATATTC+CGG + chr7.4:4863952-4863971 None:intergenic 40.0%
CACTGGCAATCAAATTCTGA+GGG + chr7.4:4864323-4864342 None:intergenic 40.0%
CACTTCACTTTAGTAGTCCT+TGG + chr7.4:4863755-4863774 None:intergenic 40.0%
CAGACAATTCTCCGGTTATT+AGG - chr7.4:4864965-4864984 MS.gene072607:intron 40.0%
CCACAAATCCAATTTCTGCA+AGG - chr7.4:4864715-4864734 MS.gene072607:intron 40.0%
CCTTGCAGAAATTGGATTTG+TGG + chr7.4:4864718-4864737 None:intergenic 40.0%
GAAAAGGAGATACCATTCAC+AGG - chr7.4:4863025-4863044 MS.gene072607:intron 40.0%
GACTGAATCTGATAACAAGG+AGG + chr7.4:4864619-4864638 None:intergenic 40.0%
GAGGGAAGAAACACTGAAAA+AGG + chr7.4:4864305-4864324 None:intergenic 40.0%
GCGTGGATCATCATTATACA+TGG - chr7.4:4863003-4863022 MS.gene072607:CDS 40.0%
TAATCACCTTGATCCTACCT+CGG - chr7.4:4864143-4864162 MS.gene072607:intron 40.0%
TACCATTTGCATCGTGGATA+TGG - chr7.4:4862737-4862756 MS.gene072607:CDS 40.0%
TACTGCTTATGATTCATGGC+AGG - chr7.4:4864368-4864387 MS.gene072607:intron 40.0%
TGAACCCTGTATTCAAGAGA+CGG + chr7.4:4864834-4864853 None:intergenic 40.0%
TGTGGCAGTAACACAAACAT+TGG - chr7.4:4864462-4864481 MS.gene072607:CDS 40.0%
TTCTCCGGTTATTAGGAACA+AGG - chr7.4:4864972-4864991 MS.gene072607:intron 40.0%
! GGGAATGCATTTTGCTAATC+AGG - chr7.4:4863658-4863677 MS.gene072607:intron 40.0%
!! AGGACTTGTTATCACCAACT+TGG - chr7.4:4862445-4862464 MS.gene072607:CDS 40.0%
!!! GACTGGTATTTTGATCGAGA+AGG - chr7.4:4865170-4865189 MS.gene072607:CDS 40.0%
AAACCGAGAGGCAAGATACA+TGG - chr7.4:4864938-4864957 MS.gene072607:CDS 45.0%
AATGGAAATCCTCTGCTCGT+AGG - chr7.4:4862575-4862594 MS.gene072607:intron 45.0%
ACATGCAGCATCCTTTCTTG+AGG - chr7.4:4862550-4862569 MS.gene072607:intron 45.0%
ACCACTGTACATATTCCGGA+GGG + chr7.4:4863948-4863967 None:intergenic 45.0%
AGCAGCTGCATTGTGGATAA+GGG + chr7.4:4862606-4862625 None:intergenic 45.0%
AGTGTCGTGTCAATGCTACA+TGG - chr7.4:4864550-4864569 MS.gene072607:intron 45.0%
ATCCACAATGCAGCTGCTAA+AGG - chr7.4:4862608-4862627 MS.gene072607:intron 45.0%
ATGGATCAGGAGCAAACAGT+TGG - chr7.4:4862756-4862775 MS.gene072607:CDS 45.0%
ATGTATCTTGCCTCTCGGTT+TGG + chr7.4:4864939-4864958 None:intergenic 45.0%
CATGCAGCATCCTTTCTTGA+GGG - chr7.4:4862551-4862570 MS.gene072607:intron 45.0%
CATTCATGCCAATAGCCATG+GGG + chr7.4:4864667-4864686 None:intergenic 45.0%
GAAGCAGAACTGCAATTCAG+AGG - chr7.4:4863593-4863612 MS.gene072607:intron 45.0%
GCATCCTTTCTTGAGGGTAA+TGG - chr7.4:4862557-4862576 MS.gene072607:intron 45.0%
GCATTCATGCCAATAGCCAT+GGG + chr7.4:4864668-4864687 None:intergenic 45.0%
GCTAATCAGGCTCTTCTTTC+CGG - chr7.4:4863671-4863690 MS.gene072607:intron 45.0%
GTCTCTTGAATACAGGGTTC+AGG - chr7.4:4864833-4864852 MS.gene072607:intron 45.0%
TACTGGAGATGGTGAAGATC+AGG - chr7.4:4863236-4863255 MS.gene072607:intron 45.0%
TAGCAGCTGCATTGTGGATA+AGG + chr7.4:4862607-4862626 None:intergenic 45.0%
TCTTCTTTCCGGATGTTCAG+CGG - chr7.4:4863682-4863701 MS.gene072607:intron 45.0%
TGATTACCGAGGTAGGATCA+AGG + chr7.4:4864152-4864171 None:intergenic 45.0%
TGCATTCATGCCAATAGCCA+TGG + chr7.4:4864669-4864688 None:intergenic 45.0%
TGCTTGGATGGAACATTACC+TGG - chr7.4:4862713-4862732 MS.gene072607:CDS 45.0%
TTCGCCGTCTCTTGAATACA+GGG - chr7.4:4864827-4864846 MS.gene072607:intron 45.0%
TTGAGAGGAAAGGTGGAGAA+AGG + chr7.4:4862665-4862684 None:intergenic 45.0%
TTGCATCGTGGATATGGATC+AGG - chr7.4:4862743-4862762 MS.gene072607:CDS 45.0%
TTGCTTTAGCTGTTGGAGAC+TGG - chr7.4:4865153-4865172 MS.gene072607:CDS 45.0%
TTGGTTTCTTGCAGTGTGCT+TGG - chr7.4:4862697-4862716 MS.gene072607:CDS 45.0%
TTTCGCCGTCTCTTGAATAC+AGG - chr7.4:4864826-4864845 MS.gene072607:intron 45.0%
TTTCTTGCAGTGTGCTTGGA+TGG - chr7.4:4862701-4862720 MS.gene072607:CDS 45.0%
! TGAAGTGTCTTAGCGATGCA+GGG - chr7.4:4863768-4863787 MS.gene072607:intron 45.0%
!! TGTGATGGTGGCTCATTTAC+TGG - chr7.4:4863219-4863238 MS.gene072607:intron 45.0%
AATGCAGCTGCTAAAGGAGC+AGG - chr7.4:4862614-4862633 MS.gene072607:intron 50.0%
ACCCTCCGGAATATGTACAG+TGG - chr7.4:4863944-4863963 MS.gene072607:CDS 50.0%
CACCACTGTACATATTCCGG+AGG + chr7.4:4863949-4863968 None:intergenic 50.0%
CCACGATGCAAATGGTAACC+AGG + chr7.4:4862734-4862753 None:intergenic 50.0%
CCTGGTTACCATTTGCATCG+TGG - chr7.4:4862731-4862750 MS.gene072607:CDS 50.0%
CGTATGTTGTCTGGTGAGAC+AGG - chr7.4:4863571-4863590 MS.gene072607:intron 50.0%
CTCCTTTAGCAGCTGCATTG+TGG + chr7.4:4862613-4862632 None:intergenic 50.0%
CTTCTTTCCGGATGTTCAGC+GGG - chr7.4:4863683-4863702 MS.gene072607:intron 50.0%
GGTGGCTCATTTACTGGAGA+TGG - chr7.4:4863225-4863244 MS.gene072607:intron 50.0%
TATCGCAAGAAAACACGGCG+TGG - chr7.4:4862986-4863005 MS.gene072607:CDS 50.0%
TCTAACTGTCATCAGGGAGG+TGG - chr7.4:4862935-4862954 MS.gene072607:CDS 50.0%
! GTGAAGTGTCTTAGCGATGC+AGG - chr7.4:4863767-4863786 MS.gene072607:intron 50.0%
!! GTGGCCTTGTGCATTTAGCA+TGG + chr7.4:4864699-4864718 None:intergenic 50.0%
ACTGTCATCAGGGAGGTGGA+TGG - chr7.4:4862939-4862958 MS.gene072607:CDS 55.0%
CAGCAGATCCCCATGGCTAT+TGG - chr7.4:4864656-4864675 MS.gene072607:CDS 55.0%
GCGAATTTGGGCAGCTGCAA+TGG - chr7.4:4863619-4863638 MS.gene072607:intron 55.0%
TAGCCATGGGGATCTGCTGA+TGG + chr7.4:4864655-4864674 None:intergenic 55.0%
!! CAGTGGTGTTGTAGGGATGC+AGG - chr7.4:4863961-4863980 MS.gene072607:CDS 55.0%
AGGGTGAGTCCTACGAGCAG+AGG + chr7.4:4862587-4862606 None:intergenic 60.0%
CCATGGGGATCTGCTGATGG+AGG + chr7.4:4864652-4864671 None:intergenic 60.0%
CCTCCATCAGCAGATCCCCA+TGG - chr7.4:4864649-4864668 MS.gene072607:CDS 60.0%
CTTTCCGGATGTTCAGCGGG+TGG - chr7.4:4863686-4863705 MS.gene072607:intron 60.0%
TAGGCCACCCGCTGAACATC+CGG + chr7.4:4863693-4863712 None:intergenic 60.0%
TCGCTCACTGCCAAACCGAG+AGG - chr7.4:4864926-4864945 MS.gene072607:CDS 60.0%
TATCTGGCGAGCGCACCCTC+CGG - chr7.4:4863930-4863949 MS.gene072607:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 4862413 4865256 4862413 ID=MS.gene072607
chr7.4 mRNA 4862413 4865256 4862413 ID=MS.gene072607.t1;Parent=MS.gene072607
chr7.4 exon 4865034 4865256 4865034 ID=MS.gene072607.t1.exon1;Parent=MS.gene072607.t1
chr7.4 CDS 4865034 4865256 4865034 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4864876 4864958 4864876 ID=MS.gene072607.t1.exon2;Parent=MS.gene072607.t1
chr7.4 CDS 4864876 4864958 4864876 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4864590 4864719 4864590 ID=MS.gene072607.t1.exon3;Parent=MS.gene072607.t1
chr7.4 CDS 4864590 4864719 4864590 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4864412 4864485 4864412 ID=MS.gene072607.t1.exon4;Parent=MS.gene072607.t1
chr7.4 CDS 4864412 4864485 4864412 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4863865 4864076 4863865 ID=MS.gene072607.t1.exon5;Parent=MS.gene072607.t1
chr7.4 CDS 4863865 4864076 4863865 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4863687 4863747 4863687 ID=MS.gene072607.t1.exon6;Parent=MS.gene072607.t1
chr7.4 CDS 4863687 4863747 4863687 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4863505 4863558 4863505 ID=MS.gene072607.t1.exon7;Parent=MS.gene072607.t1
chr7.4 CDS 4863505 4863558 4863505 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4863280 4863357 4863280 ID=MS.gene072607.t1.exon8;Parent=MS.gene072607.t1
chr7.4 CDS 4863280 4863357 4863280 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4862933 4863038 4862933 ID=MS.gene072607.t1.exon9;Parent=MS.gene072607.t1
chr7.4 CDS 4862933 4863038 4862933 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4862676 4862821 4862676 ID=MS.gene072607.t1.exon10;Parent=MS.gene072607.t1
chr7.4 CDS 4862676 4862821 4862676 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
chr7.4 exon 4862413 4862520 4862413 ID=MS.gene072607.t1.exon11;Parent=MS.gene072607.t1
chr7.4 CDS 4862413 4862520 4862413 ID=cds.MS.gene072607.t1;Parent=MS.gene072607.t1
Gene Sequence

>MS.gene072607

ATGGCTAAACTTTTCTGGGTTTTCATTGCAATAGGACTTGTTATCACCAACTTGGTTTATGGGTTTGAATTAGGATATGGTCAACATGATCACTTCTTCAATGAAACTGAAGAACTCTTTCTGTTAGAGGCTCATGAACATGCAGCATCCTTTCTTGAGGGTAATGGAAATCCTCTGCTCGTAGGACTCACCCTTATCCACAATGCAGCTGCTAAAGGAGCAGGTACTACCTACAAACAAACAATACAACCTTTCTCCACCTTTCCTCTCAATATTAAATATTTTTGGTTTCTTGCAGTGTGCTTGGATGGAACATTACCTGGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAACAGTTGGCTTGTTAATTTAGAGGTATTTCTTCTTATTTGGTTGATGAACTTTTCTTTTCTTTTCTTTTGGTATTTCTTCAAAAGCATTTCTTGTAACATGCATGCATATATGCCATGGCATAATTAACTGAAAATATTTAGAAATAATTAAAGTTTTAGGATTTCTAACTGTCATCAGGGAGGTGGATGGTGCAACAATGTCAGAACATGTGTTTATCGCAAGAAAACACGGCGTGGATCATCATTATACATGGAAAAGGAGATACCATTCACAGGAATACTTAGTAATAAACCTGAAGAAAATCCAGGTTTAATTTTCATTCAATTTATCTATTTATATTTCATTTTTGCTTTTTTAATTTGTTATAGGCAATAGCCTCTCATGTTATTGTTGCTCATATTTAATTTGCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGGCTCATTTACTGGAGATGGTGAAGATCAGGTACTATTAGATGTAAAAATTAATTACACTAGGTAACTGACTAACAAACTGGCGTAATTAATTAAATAGTGTAACTAACTTTTACATTTAATATGTAAAATTTGATATTTTGGGTTCTTCAAATGATACTTGTTTATACCGTAGACCTGTATCCTTTTTTGCATAAAAGTTAACTTTTGAGACTCAATTTTATAGCAGAAACTTGTAAGAGCAAGGTATAAAAGAGAAAAAATAACACCATTGTTGAGATACATGACTTGAACTTACTTGACATTCATTCATGTGATGAAATGAGTATTTACTACTTTATTTACGTATGTTGTCTGGTGAGACAGGAAGCAGAACTGCAATTCAGAGGACAGCGAATTTGGGCAGCTGCAATGGAAGATTTGATGTTAAAGGGAATGCATTTTGCTAATCAGGCTCTTCTTTCCGGATGTTCAGCGGGTGGCCTAGCTACTATTATACACTGTGATGAATTTCGAGGTCTCTTTCCAAGGACTACTAAAGTGAAGTGTCTTAGCGATGCAGGGTTGTTTCTTGATTCGTAAGCAACAAACAAACAAACTGCATTATTTCATGCTTCCAATGCCATTTCTACCATCATTACAAAAAAAATTAATCTTTAGTTAGTTGTTAATTTTTGTTTGCATTGAAATTATAGGATTGATATATCTGGCGAGCGCACCCTCCGGAATATGTACAGTGGTGTTGTAGGGATGCAGGTAACGCCACACTAATCACAAGAATACCAGCTTATTACAAATAGTTTATATTCTTTCATGGCTATGTTATTTAACATGGTTGTAACATTTGTAAGGCATGCTGAGAATTATTTGTTTGATCACTGTAGGAAGCACAGAAGAATCTACCACAGATTTGTACTAATCACCTTGATCCTACCTCGGTAATCATAATCATTGATAATTGATTTCAGTTTTGTCAAATAGTTAGGAGTGTTAGTTTCATTTGAAAGAACAAAAAATTGATTTCTCTGCTAATACTTGCTTATAACTTGAACTTTCAGTGACCTGTTTTATTACTCCTTTTTCAGTGTTTCTTCCCTCAGAATTTGATTGCCAGTGTTAGAACACCACTTTTTCTTCTCAATACTGCTTATGATTCATGGCAGGTAAATATCCTAAGTTTGTCAATTGGTAGTCTTTAGTTTTTACTTGTGATAAATAAATAATAGTATATGAGATGTGGCAGTAACACAAACATTGGACACAATACTAACGGCTAACACATAGACACCGATAATGAAATGATTAAATGTATCGGTACGTGTCAGTGTCGTGTCAATGCTACATGGTAGTGATCATTACATTATTGTTTGTTCTAAACGATTGCATTTTCCTCCTTGTTATCAGATTCAGTCAAGTTTAGCTCCTCCATCAGCAGATCCCCATGGCTATTGGCATGAATGCAGATTAAACCATGCTAAATGCACAAGGCCACAAATCCAATTTCTGCAAGGTGATGTATAAGAATTAGTACCATTCATTGCAAGTGGAGAAAAATATTCAATAACTTATTATTACTATATTATTCAGTTGGTTAACACATTTCGCCGTCTCTTGAATACAGGGTTCAGGACTCATATGTTGAATTCTATTAAAGACTTCTCAAGATCAAACAAGAATGGATTGTTTATCAATTCGTGTTTCGCTCACTGCCAAACCGAGAGGCAAGATACATGGTTTTCAGACAATTCTCCGGTTATTAGGAACAAGGTGAACATTGCAGTTTCACTTATGTTGTTTTAAGTAATAGTTAAATAAAACAAAATGTACACAATAATTGAACTAGAATTTCTTACAATACTCTATAATATAAAGATATTTTTGTATCTAATCTAATAATATGTACATACATTGACTAAATGTAGGTAATTGCTTTAGCTGTTGGAGACTGGTATTTTGATCGAGAAGGTGTTAAGGTCATTGATTGTCCTTACCCTTGTGATAATACATGTCACCATTTGGTTTTCAGTTGA

Protein sequence

>MS.gene072607.t1

MAKLFWVFIAIGLVITNLVYGFELGYGQHDHFFNETEELFLLEAHEHAASFLEGNGNPLLVGLTLIHNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLVNLEGGGWCNNVRTCVYRKKTRRGSSLYMEKEIPFTGILSNKPEENPDFFNWNRVKLRYCDGGSFTGDGEDQEAELQFRGQRIWAAAMEDLMLKGMHFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDSIDISGERTLRNMYSGVVGMQEAQKNLPQICTNHLDPTSCFFPQNLIASVRTPLFLLNTAYDSWQIQSSLAPPSADPHGYWHECRLNHAKCTRPQIQFLQGFRTHMLNSIKDFSRSNKNGLFINSCFAHCQTERQDTWFSDNSPVIRNKVIALAVGDWYFDREGVKVIDCPYPCDNTCHHLVFS