Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21119.t1 | XP_013469132.1 | 95.2 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 4.10E-230 | 807 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21119.t1 | F4I839 | 63.6 | 420 | 143 | 2 | 2 | 413 | 27 | 444 | 1.6e-161 | 570.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21119.t1 | A0A072VYL4 | 95.2 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 3.0e-230 | 807.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050806 | MS.gene21119 | PPI |
| MS.gene21087 | MS.gene21119 | PPI |
| MS.gene23104 | MS.gene21119 | PPI |
| MS.gene005379 | MS.gene21119 | PPI |
| MS.gene072607 | MS.gene21119 | PPI |
| MS.gene20959 | MS.gene21119 | PPI |
| MS.gene21119 | MS.gene050805 | PPI |
| MS.gene22940 | MS.gene21119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21119.t1 | MTR_1g085620 | 95.157 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 0.0 | 805 |
| MS.gene21119.t1 | MTR_7g110900 | 73.188 | 414 | 105 | 2 | 2 | 411 | 3 | 414 | 0.0 | 649 |
| MS.gene21119.t1 | MTR_7g110900 | 73.012 | 415 | 106 | 2 | 2 | 412 | 3 | 415 | 0.0 | 647 |
| MS.gene21119.t1 | MTR_1g085620 | 96.656 | 299 | 10 | 0 | 115 | 413 | 1 | 299 | 0.0 | 606 |
| MS.gene21119.t1 | MTR_7g111280 | 71.038 | 366 | 106 | 0 | 46 | 411 | 53 | 418 | 0.0 | 577 |
| MS.gene21119.t1 | MTR_4g124320 | 63.246 | 419 | 139 | 4 | 1 | 411 | 9 | 420 | 0.0 | 554 |
| MS.gene21119.t1 | MTR_1g085070 | 64.615 | 390 | 120 | 3 | 26 | 412 | 28 | 402 | 0.0 | 544 |
| MS.gene21119.t1 | MTR_7g060760 | 50.374 | 401 | 188 | 3 | 15 | 413 | 28 | 419 | 1.10e-149 | 431 |
| MS.gene21119.t1 | MTR_8g072000 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 6.31e-146 | 420 |
| MS.gene21119.t1 | MTR_8g072010 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 1.54e-145 | 420 |
| MS.gene21119.t1 | MTR_8g072000 | 49.589 | 365 | 182 | 1 | 49 | 411 | 59 | 423 | 1.77e-145 | 420 |
| MS.gene21119.t1 | MTR_1g101000 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 2.57e-145 | 419 |
| MS.gene21119.t1 | MTR_1g101000 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 4.09e-145 | 420 |
| MS.gene21119.t1 | MTR_1g101020 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 1.87e-142 | 412 |
| MS.gene21119.t1 | MTR_4g124320 | 62.171 | 304 | 100 | 4 | 1 | 296 | 9 | 305 | 1.09e-137 | 397 |
| MS.gene21119.t1 | MTR_5g042650 | 49.041 | 365 | 180 | 2 | 48 | 410 | 28 | 388 | 3.40e-135 | 393 |
| MS.gene21119.t1 | MTR_1g101000 | 52.786 | 341 | 155 | 4 | 49 | 383 | 39 | 379 | 8.33e-126 | 369 |
| MS.gene21119.t1 | MTR_7g006750 | 35.294 | 153 | 80 | 3 | 139 | 281 | 417 | 560 | 8.09e-23 | 101 |
| MS.gene21119.t1 | MTR_1g036590 | 51.220 | 82 | 40 | 0 | 229 | 310 | 270 | 351 | 1.66e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21119.t1 | AT1G57590 | 63.571 | 420 | 143 | 2 | 2 | 413 | 27 | 444 | 0.0 | 575 |
| MS.gene21119.t1 | AT3G62060 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| MS.gene21119.t1 | AT3G62060 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| MS.gene21119.t1 | AT5G26670 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 564 |
| MS.gene21119.t1 | AT3G05910 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 564 |
| MS.gene21119.t1 | AT2G46930 | 63.309 | 417 | 145 | 3 | 3 | 412 | 1 | 416 | 0.0 | 558 |
| MS.gene21119.t1 | AT4G19420 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 1.40e-160 | 457 |
| MS.gene21119.t1 | AT4G19420 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 1.40e-160 | 457 |
| MS.gene21119.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene21119.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene21119.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene21119.t1 | AT4G19420 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 1.81e-153 | 441 |
| MS.gene21119.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 3.54e-153 | 439 |
| MS.gene21119.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 3.54e-153 | 439 |
| MS.gene21119.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 4.74e-153 | 440 |
| MS.gene21119.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 5.26e-153 | 441 |
| MS.gene21119.t1 | AT1G09550 | 55.278 | 360 | 156 | 3 | 31 | 390 | 28 | 382 | 3.13e-150 | 431 |
| MS.gene21119.t1 | AT3G09410 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 5.36e-149 | 429 |
| MS.gene21119.t1 | AT3G05910 | 68.966 | 261 | 80 | 1 | 43 | 303 | 47 | 306 | 6.48e-137 | 394 |
| MS.gene21119.t1 | AT3G09405 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 5.43e-136 | 395 |
| MS.gene21119.t1 | AT4G19410 | 47.368 | 361 | 187 | 2 | 49 | 406 | 24 | 384 | 1.83e-133 | 389 |
| MS.gene21119.t1 | AT5G45280 | 46.537 | 361 | 190 | 2 | 49 | 406 | 24 | 384 | 3.20e-131 | 383 |
| MS.gene21119.t1 | AT3G09410 | 48.501 | 367 | 182 | 2 | 14 | 377 | 30 | 392 | 8.51e-130 | 379 |
| MS.gene21119.t1 | AT4G19410 | 47.674 | 344 | 178 | 1 | 49 | 390 | 24 | 367 | 9.41e-127 | 376 |
| MS.gene21119.t1 | AT3G09405 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 3.08e-109 | 323 |
| MS.gene21119.t1 | AT5G45280 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 1.03e-108 | 325 |
| MS.gene21119.t1 | AT4G19420 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.22e-93 | 284 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | 10913:82836-82855 | None:intergenic | 10.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | 10913:80778-80797 | None:intergenic | 15.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | 10913:80777-80796 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | 10913:82484-82503 | MS.gene21119:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | 10913:82520-82539 | None:intergenic | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | 10913:80879-80898 | MS.gene21119:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | 10913:81304-81323 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | 10913:80783-80802 | MS.gene21119:intron | 15.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | 10913:80645-80664 | None:intergenic | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | 10913:82158-82177 | MS.gene21119:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | + | 10913:83007-83026 | MS.gene21119:intron | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | 10913:81306-81325 | MS.gene21119:intron | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | 10913:81862-81881 | MS.gene21119:intron | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | 10913:81859-81878 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | 10913:81841-81860 | None:intergenic | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | 10913:81840-81859 | None:intergenic | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | 10913:81688-81707 | MS.gene21119:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | 10913:81596-81615 | MS.gene21119:intron | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | 10913:81135-81154 | None:intergenic | 20.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | 10913:82770-82789 | MS.gene21119:CDS | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | 10913:80687-80706 | None:intergenic | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | 10913:81607-81626 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | 10913:82114-82133 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | 10913:80686-80705 | None:intergenic | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | 10913:82032-82051 | MS.gene21119:CDS | 25.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | 10913:80415-80434 | MS.gene21119:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | 10913:82113-82132 | None:intergenic | 25.0% |
| ! | ACACTTTCTAAATTCCTATA+GGG | + | 10913:81440-81459 | MS.gene21119:intron | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | - | 10913:82348-82367 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | 10913:81954-81973 | None:intergenic | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | 10913:80646-80665 | None:intergenic | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | 10913:82711-82730 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | 10913:81353-81372 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | - | 10913:80978-80997 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | 10913:81355-81374 | MS.gene21119:intron | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | 10913:82386-82405 | MS.gene21119:intron | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | 10913:80728-80747 | None:intergenic | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | 10913:83555-83574 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | 10913:81839-81858 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | + | 10913:81983-82002 | MS.gene21119:intron | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | 10913:82771-82790 | None:intergenic | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | 10913:82676-82695 | MS.gene21119:intron | 25.0% |
| !!! | CAGTACTATTTTGAAATTGT+AGG | + | 10913:82728-82747 | MS.gene21119:intron | 25.0% |
| AAACAAGCATAAGAATACTC+TGG | - | 10913:81083-81102 | None:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | - | 10913:81082-81101 | None:intergenic | 30.0% | |
| ACTAATTCTGCTAAAAGCTT+AGG | + | 10913:82612-82631 | MS.gene21119:intron | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | 10913:81745-81764 | MS.gene21119:CDS | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | 10913:81871-81890 | None:intergenic | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | 10913:80626-80645 | None:intergenic | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | 10913:80501-80520 | None:intergenic | 30.0% | |
| CTCTTTCTTTAACTATGCTA+TGG | + | 10913:81401-81420 | MS.gene21119:intron | 30.0% | |
| GAATTTGCATTCTTAGTTTC+TGG | + | 10913:80414-80433 | MS.gene21119:CDS | 30.0% | |
| GACACTTTCTAAATTCCTAT+AGG | + | 10913:81439-81458 | MS.gene21119:intron | 30.0% | |
| GCCTTCCATAAAAATCTTAA+GGG | - | 10913:81870-81889 | None:intergenic | 30.0% | |
| GTAGGATAAAGAAAATACCT+GGG | - | 10913:81589-81608 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | 10913:80500-80519 | MS.gene21119:CDS | 30.0% | |
| TGCTTCGAATATTCAAAACT+TGG | - | 10913:82863-82882 | None:intergenic | 30.0% | |
| TGTAGAATTGATATATCTGG+AGG | + | 10913:82389-82408 | MS.gene21119:intron | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | 10913:81590-81609 | None:intergenic | 30.0% | |
| TTGTTCAATCTTAATGTTCG+TGG | + | 10913:82129-82148 | MS.gene21119:intron | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | 10913:81260-81279 | MS.gene21119:CDS | 30.0% |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | 10913:81866-81885 | MS.gene21119:intron | 30.0% |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | 10913:81525-81544 | None:intergenic | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | 10913:82758-82777 | None:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | - | 10913:83357-83376 | None:intergenic | 30.0% |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | 10913:82255-82274 | None:intergenic | 30.0% |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | + | 10913:81997-82016 | MS.gene21119:intron | 30.0% |
| AAAGAAATCTGTGCATGGAA+TGG | - | 10913:81724-81743 | None:intergenic | 35.0% | |
| AACTATTGTCTCAAGGAATG+CGG | + | 10913:82071-82090 | MS.gene21119:CDS | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | 10913:81569-81588 | MS.gene21119:CDS | 35.0% | |
| ACAATGAGGAATATGTTTGG+AGG | + | 10913:82416-82435 | MS.gene21119:CDS | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | + | 10913:83086-83105 | MS.gene21119:intron | 35.0% | |
| AGCAATTAACTCAGCACTAA+AGG | - | 10913:81930-81949 | None:intergenic | 35.0% | |
| AGCTAACCCATTACTTTAGT+TGG | + | 10913:80677-80696 | MS.gene21119:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | 10913:83212-83231 | None:intergenic | 35.0% | |
| ATAAGTTGCAGCATCAATGA+GGG | - | 10913:81653-81672 | None:intergenic | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | 10913:82064-82083 | MS.gene21119:CDS | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | 10913:81233-81252 | None:intergenic | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | 10913:83497-83516 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | 10913:81729-81748 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | 10913:81727-81746 | MS.gene21119:intron | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | 10913:81948-81967 | MS.gene21119:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | 10913:80842-80861 | None:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | 10913:80840-80859 | MS.gene21119:intron | 35.0% | |
| CTTTCTAAATTCCTATAGGG+AGG | + | 10913:81443-81462 | MS.gene21119:intron | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | 10913:81536-81555 | MS.gene21119:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | 10913:82220-82239 | None:intergenic | 35.0% | |
| GAATGAGAATTACCGAAGTT+GGG | - | 10913:82797-82816 | None:intergenic | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | 10913:81497-81516 | MS.gene21119:CDS | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | - | 10913:82798-82817 | None:intergenic | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | 10913:80837-80856 | MS.gene21119:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | 10913:80915-80934 | MS.gene21119:intron | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | 10913:83401-83420 | MS.gene21119:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | 10913:82572-82591 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | 10913:81247-81266 | MS.gene21119:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | 10913:81551-81570 | None:intergenic | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | 10913:81578-81597 | None:intergenic | 35.0% |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | 10913:80610-80629 | None:intergenic | 35.0% |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | 10913:82242-82261 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | 10913:80669-80688 | None:intergenic | 35.0% |
| !! | CAATAGCTTTGACAACTTCT+CGG | - | 10913:83680-83699 | None:intergenic | 35.0% |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | 10913:81756-81775 | MS.gene21119:CDS | 35.0% |
| AACATTGCCTGGTTACCATT+TGG | + | 10913:81215-81234 | MS.gene21119:CDS | 40.0% | |
| AGAAACATGGGAAACCTGTT+CGG | - | 10913:82101-82120 | None:intergenic | 40.0% | |
| AGAGATTGAAAACACCTTGG+AGG | - | 10913:83209-83228 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | 10913:83715-83734 | None:intergenic | 40.0% | |
| CAACAAAATGGACCCAACTT+CGG | + | 10913:82782-82801 | MS.gene21119:CDS | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | - | 10913:81654-81673 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | 10913:82579-82598 | None:intergenic | 40.0% | |
| CGCACAATGAGGAATATGTT+TGG | + | 10913:82413-82432 | MS.gene21119:CDS | 40.0% | |
| GAACTGTGTGGTTAATGGTT+TGG | - | 10913:82567-82586 | None:intergenic | 40.0% | |
| TCAAATGCTTGACGACATGA+AGG | + | 10913:83376-83395 | MS.gene21119:CDS | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | 10913:81514-81533 | MS.gene21119:CDS | 40.0% | |
| TCTAAATTCCTATAGGGAGG+AGG | + | 10913:81446-81465 | MS.gene21119:intron | 40.0% | |
| TCTTATCACCACAGTCTGTT+TGG | + | 10913:81188-81207 | MS.gene21119:intron | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | 10913:83716-83735 | MS.gene21119:CDS | 40.0% | |
| TTATGGCAGCTATTGTCACA+GGG | - | 10913:83714-83733 | None:intergenic | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | 10913:81234-81253 | MS.gene21119:CDS | 40.0% | |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | 10913:82626-82645 | MS.gene21119:intron | 40.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | 10913:80537-80556 | MS.gene21119:CDS | 40.0% |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | 10913:83490-83509 | MS.gene21119:CDS | 40.0% |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | 10913:82267-82286 | MS.gene21119:CDS | 40.0% |
| ! | GTGGTTAATGGTTTGGAATG+TGG | - | 10913:82560-82579 | None:intergenic | 40.0% |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | 10913:82005-82024 | MS.gene21119:intron | 40.0% |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | 10913:81263-81282 | MS.gene21119:CDS | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | 10913:82048-82067 | MS.gene21119:CDS | 40.0% |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | 10913:82933-82952 | MS.gene21119:CDS | 40.0% |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | 10913:82576-82595 | MS.gene21119:intron | 40.0% |
| AATTCCTATAGGGAGGAGGA+TGG | + | 10913:81450-81469 | MS.gene21119:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | 10913:82907-82926 | None:intergenic | 45.0% | |
| AGAGTGAGGTCTACCATATG+AGG | - | 10913:80516-80535 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | - | 10913:83707-83726 | None:intergenic | 45.0% | |
| ATCACCACAGTCTGTTTGGA+TGG | + | 10913:81192-81211 | MS.gene21119:intron | 45.0% | |
| ATGATGTGTGGCAGGTAACA+TGG | + | 10913:82959-82978 | MS.gene21119:intron | 45.0% | |
| CTACACTGACACATAGACAC+TGG | - | 10913:81026-81045 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | 10913:81052-81071 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | 10913:81051-81070 | MS.gene21119:intron | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | 10913:80522-80541 | MS.gene21119:CDS | 45.0% | |
| GTGCTTCTTTCCTCAGAATG+TGG | + | 10913:82894-82913 | MS.gene21119:intron | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | 10913:83713-83732 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | 10913:83192-83211 | MS.gene21119:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | 10913:83645-83664 | None:intergenic | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | 10913:81788-81807 | MS.gene21119:CDS | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | 10913:81199-81218 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | 10913:81204-81223 | MS.gene21119:CDS | 45.0% | |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | 10913:80448-80467 | None:intergenic | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | - | 10913:82894-82913 | None:intergenic | 45.0% |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | 10913:82004-82023 | MS.gene21119:intron | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | 10913:80429-80448 | MS.gene21119:CDS | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | + | 10913:82433-82452 | MS.gene21119:CDS | 45.0% |
| !! | AAGCACCGACATACACAACA+TGG | - | 10913:81059-81078 | None:intergenic | 45.0% |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | 10913:80386-80405 | MS.gene21119:CDS | 45.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | - | 10913:83143-83162 | None:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | 10913:83456-83475 | MS.gene21119:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | 10913:83457-83476 | None:intergenic | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | 10913:83639-83658 | MS.gene21119:intron | 50.0% | |
| CAGCTATTGTCACAGGGGTA+AGG | - | 10913:83708-83727 | None:intergenic | 50.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | 10913:80530-80549 | None:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | 10913:83144-83163 | None:intergenic | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | 10913:81225-81244 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | 10913:81222-81241 | MS.gene21119:CDS | 50.0% | |
| CGACATCTCACCGACATATG+TGG | + | 10913:80965-80984 | MS.gene21119:intron | 50.0% | |
| GAAATTGAAGCCCTTCAGCC+TGG | - | 10913:82018-82037 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | 10913:80556-80575 | None:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | 10913:83145-83164 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | 10913:82937-82956 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | 10913:82019-82038 | MS.gene21119:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | 10913:82171-82190 | MS.gene21119:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | + | 10913:82402-82421 | MS.gene21119:CDS | 50.0% | |
| TCAACGCGGCTTATGATGTG+TGG | + | 10913:82947-82966 | MS.gene21119:CDS | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | 10913:83448-83467 | MS.gene21119:CDS | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | 10913:83146-83165 | None:intergenic | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | 10913:83646-83665 | MS.gene21119:CDS | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | 10913:83118-83137 | None:intergenic | 50.0% |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | 10913:83104-83123 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | 10913:83113-83132 | None:intergenic | 50.0% |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | 10913:81771-81790 | MS.gene21119:CDS | 50.0% |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | 10913:83127-83146 | None:intergenic | 55.0% | |
| AGGAATGCGGAATGCCGAAC+AGG | + | 10913:82084-82103 | MS.gene21119:CDS | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | 10913:83128-83147 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAT+AGG | - | 10913:81457-81476 | None:intergenic | 55.0% | |
| CCTTCTCTCTGGATGCTCTG+CGG | + | 10913:82182-82201 | MS.gene21119:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | 10913:82183-82202 | MS.gene21119:CDS | 55.0% | |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | 10913:82184-82203 | None:intergenic | 55.0% |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | 10913:80543-80562 | MS.gene21119:CDS | 55.0% |
| CCAAAGACAGCTGACCCCCT+TGG | + | 10913:83126-83145 | MS.gene21119:CDS | 60.0% | |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | 10913:83129-83148 | None:intergenic | 60.0% | |
| CGCGGCTTATGATGTGTGGC+AGG | + | 10913:82951-82970 | MS.gene21119:CDS | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | 10913:82185-82204 | None:intergenic | 60.0% |
| CTCTCTGGATGCTCTGCGGG+TGG | + | 10913:82186-82205 | MS.gene21119:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | 10913:83133-83152 | MS.gene21119:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10913 | gene | 80378 | 83749 | 80378 | ID=MS.gene21119 |
| 10913 | mRNA | 80378 | 83749 | 80378 | ID=MS.gene21119.t1;Parent=MS.gene21119 |
| 10913 | exon | 80378 | 80564 | 80378 | ID=MS.gene21119.t1.exon1;Parent=MS.gene21119.t1 |
| 10913 | CDS | 80378 | 80564 | 80378 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 81202 | 81284 | 81202 | ID=MS.gene21119.t1.exon2;Parent=MS.gene21119.t1 |
| 10913 | CDS | 81202 | 81284 | 81202 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 81461 | 81590 | 81461 | ID=MS.gene21119.t1.exon3;Parent=MS.gene21119.t1 |
| 10913 | CDS | 81461 | 81590 | 81461 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 81736 | 81809 | 81736 | ID=MS.gene21119.t1.exon4;Parent=MS.gene21119.t1 |
| 10913 | CDS | 81736 | 81809 | 81736 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 82019 | 82105 | 82019 | ID=MS.gene21119.t1.exon5;Parent=MS.gene21119.t1 |
| 10913 | CDS | 82019 | 82105 | 82019 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 82180 | 82304 | 82180 | ID=MS.gene21119.t1.exon6;Parent=MS.gene21119.t1 |
| 10913 | CDS | 82180 | 82304 | 82180 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 82394 | 82454 | 82394 | ID=MS.gene21119.t1.exon7;Parent=MS.gene21119.t1 |
| 10913 | CDS | 82394 | 82454 | 82394 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 82750 | 82803 | 82750 | ID=MS.gene21119.t1.exon8;Parent=MS.gene21119.t1 |
| 10913 | CDS | 82750 | 82803 | 82750 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 82895 | 82972 | 82895 | ID=MS.gene21119.t1.exon9;Parent=MS.gene21119.t1 |
| 10913 | CDS | 82895 | 82972 | 82895 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 83108 | 83213 | 83108 | ID=MS.gene21119.t1.exon10;Parent=MS.gene21119.t1 |
| 10913 | CDS | 83108 | 83213 | 83108 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 83366 | 83511 | 83366 | ID=MS.gene21119.t1.exon11;Parent=MS.gene21119.t1 |
| 10913 | CDS | 83366 | 83511 | 83366 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| 10913 | exon | 83642 | 83749 | 83642 | ID=MS.gene21119.t1.exon12;Parent=MS.gene21119.t1 |
| 10913 | CDS | 83642 | 83749 | 83642 | ID=cds.MS.gene21119.t1;Parent=MS.gene21119.t1 |
| Gene Sequence |
| Protein sequence |
