Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071630.t1 | XP_013469132.1 | 95.2 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 4.10E-230 | 807 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071630.t1 | F4I839 | 63.6 | 420 | 143 | 2 | 2 | 413 | 27 | 444 | 1.6e-161 | 570.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071630.t1 | A0A072VYL4 | 95.2 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 3.0e-230 | 807.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071630 | MS.gene050805 | PPI |
| MS.gene072607 | MS.gene071630 | PPI |
| MS.gene20959 | MS.gene071630 | PPI |
| MS.gene071630 | MS.gene050806 | PPI |
| MS.gene071630 | MS.gene22940 | PPI |
| MS.gene21087 | MS.gene071630 | PPI |
| MS.gene23104 | MS.gene071630 | PPI |
| MS.gene005379 | MS.gene071630 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071630.t1 | MTR_1g085620 | 95.157 | 413 | 11 | 3 | 1 | 413 | 1 | 404 | 0.0 | 805 |
| MS.gene071630.t1 | MTR_7g110900 | 73.188 | 414 | 105 | 2 | 2 | 411 | 3 | 414 | 0.0 | 649 |
| MS.gene071630.t1 | MTR_7g110900 | 73.012 | 415 | 106 | 2 | 2 | 412 | 3 | 415 | 0.0 | 647 |
| MS.gene071630.t1 | MTR_1g085620 | 96.656 | 299 | 10 | 0 | 115 | 413 | 1 | 299 | 0.0 | 606 |
| MS.gene071630.t1 | MTR_7g111280 | 71.038 | 366 | 106 | 0 | 46 | 411 | 53 | 418 | 0.0 | 577 |
| MS.gene071630.t1 | MTR_4g124320 | 63.246 | 419 | 139 | 4 | 1 | 411 | 9 | 420 | 0.0 | 554 |
| MS.gene071630.t1 | MTR_1g085070 | 64.615 | 390 | 120 | 3 | 26 | 412 | 28 | 402 | 0.0 | 544 |
| MS.gene071630.t1 | MTR_7g060760 | 50.374 | 401 | 188 | 3 | 15 | 413 | 28 | 419 | 1.10e-149 | 431 |
| MS.gene071630.t1 | MTR_8g072000 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 6.31e-146 | 420 |
| MS.gene071630.t1 | MTR_8g072010 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 1.54e-145 | 420 |
| MS.gene071630.t1 | MTR_8g072000 | 49.589 | 365 | 182 | 1 | 49 | 411 | 59 | 423 | 1.77e-145 | 420 |
| MS.gene071630.t1 | MTR_1g101000 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 2.57e-145 | 419 |
| MS.gene071630.t1 | MTR_1g101000 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 4.09e-145 | 420 |
| MS.gene071630.t1 | MTR_1g101020 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 1.87e-142 | 412 |
| MS.gene071630.t1 | MTR_4g124320 | 62.171 | 304 | 100 | 4 | 1 | 296 | 9 | 305 | 1.09e-137 | 397 |
| MS.gene071630.t1 | MTR_5g042650 | 49.041 | 365 | 180 | 2 | 48 | 410 | 28 | 388 | 3.40e-135 | 393 |
| MS.gene071630.t1 | MTR_1g101000 | 52.786 | 341 | 155 | 4 | 49 | 383 | 39 | 379 | 8.33e-126 | 369 |
| MS.gene071630.t1 | MTR_7g006750 | 35.294 | 153 | 80 | 3 | 139 | 281 | 417 | 560 | 8.09e-23 | 101 |
| MS.gene071630.t1 | MTR_1g036590 | 51.220 | 82 | 40 | 0 | 229 | 310 | 270 | 351 | 1.66e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071630.t1 | AT1G57590 | 63.571 | 420 | 143 | 2 | 2 | 413 | 27 | 444 | 0.0 | 575 |
| MS.gene071630.t1 | AT3G62060 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| MS.gene071630.t1 | AT3G62060 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| MS.gene071630.t1 | AT5G26670 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 564 |
| MS.gene071630.t1 | AT3G05910 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 564 |
| MS.gene071630.t1 | AT2G46930 | 63.309 | 417 | 145 | 3 | 3 | 412 | 1 | 416 | 0.0 | 558 |
| MS.gene071630.t1 | AT4G19420 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 1.40e-160 | 457 |
| MS.gene071630.t1 | AT4G19420 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 1.40e-160 | 457 |
| MS.gene071630.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene071630.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene071630.t1 | AT5G26670 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 2.28e-156 | 443 |
| MS.gene071630.t1 | AT4G19420 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 1.81e-153 | 441 |
| MS.gene071630.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 3.54e-153 | 439 |
| MS.gene071630.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 3.54e-153 | 439 |
| MS.gene071630.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 4.74e-153 | 440 |
| MS.gene071630.t1 | AT5G23870 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 5.26e-153 | 441 |
| MS.gene071630.t1 | AT1G09550 | 55.278 | 360 | 156 | 3 | 31 | 390 | 28 | 382 | 3.13e-150 | 431 |
| MS.gene071630.t1 | AT3G09410 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 5.36e-149 | 429 |
| MS.gene071630.t1 | AT3G05910 | 68.966 | 261 | 80 | 1 | 43 | 303 | 47 | 306 | 6.48e-137 | 394 |
| MS.gene071630.t1 | AT3G09405 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 5.43e-136 | 395 |
| MS.gene071630.t1 | AT4G19410 | 47.368 | 361 | 187 | 2 | 49 | 406 | 24 | 384 | 1.83e-133 | 389 |
| MS.gene071630.t1 | AT5G45280 | 46.537 | 361 | 190 | 2 | 49 | 406 | 24 | 384 | 3.20e-131 | 383 |
| MS.gene071630.t1 | AT3G09410 | 48.501 | 367 | 182 | 2 | 14 | 377 | 30 | 392 | 8.51e-130 | 379 |
| MS.gene071630.t1 | AT4G19410 | 47.674 | 344 | 178 | 1 | 49 | 390 | 24 | 367 | 9.41e-127 | 376 |
| MS.gene071630.t1 | AT3G09405 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 3.08e-109 | 323 |
| MS.gene071630.t1 | AT5G45280 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 1.03e-108 | 325 |
| MS.gene071630.t1 | AT4G19420 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.22e-93 | 284 |
Find 0 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | 10462:6533-6552 | MS.gene071630:intergenic | 10.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | 10462:4475-4494 | MS.gene071630:intergenic | 15.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | 10462:4474-4493 | MS.gene071630:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | 10462:6181-6200 | MS.gene071630:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | 10462:6217-6236 | MS.gene071630:intergenic | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | 10462:4576-4595 | MS.gene071630:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | 10462:5001-5020 | MS.gene071630:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | 10462:4480-4499 | MS.gene071630:intron | 15.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | 10462:4342-4361 | MS.gene071630:intergenic | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | 10462:5855-5874 | MS.gene071630:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | + | 10462:6704-6723 | MS.gene071630:intron | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | 10462:5003-5022 | MS.gene071630:intron | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | 10462:5559-5578 | MS.gene071630:intron | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | 10462:5556-5575 | MS.gene071630:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | 10462:5538-5557 | MS.gene071630:intergenic | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | 10462:5537-5556 | MS.gene071630:intergenic | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | 10462:5385-5404 | MS.gene071630:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | 10462:5293-5312 | MS.gene071630:intron | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | 10462:4832-4851 | MS.gene071630:intergenic | 20.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | 10462:6467-6486 | MS.gene071630:CDS | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | 10462:4384-4403 | MS.gene071630:intergenic | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | 10462:5304-5323 | MS.gene071630:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | 10462:5811-5830 | MS.gene071630:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | 10462:4383-4402 | MS.gene071630:intergenic | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | 10462:5729-5748 | MS.gene071630:CDS | 25.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | 10462:4112-4131 | MS.gene071630:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | 10462:5810-5829 | MS.gene071630:intergenic | 25.0% |
| ! | ACACTTTCTAAATTCCTATA+GGG | + | 10462:5137-5156 | MS.gene071630:intron | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | - | 10462:6045-6064 | MS.gene071630:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | 10462:5651-5670 | MS.gene071630:intergenic | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | 10462:4343-4362 | MS.gene071630:intergenic | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | 10462:6408-6427 | MS.gene071630:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | 10462:5050-5069 | MS.gene071630:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | - | 10462:4675-4694 | MS.gene071630:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | 10462:5052-5071 | MS.gene071630:intron | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | 10462:6083-6102 | MS.gene071630:intron | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | 10462:4425-4444 | MS.gene071630:intergenic | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | 10462:7252-7271 | MS.gene071630:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | 10462:5536-5555 | MS.gene071630:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | + | 10462:5680-5699 | MS.gene071630:intron | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | 10462:6468-6487 | MS.gene071630:intergenic | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | 10462:6373-6392 | MS.gene071630:intron | 25.0% |
| !!! | CAGTACTATTTTGAAATTGT+AGG | + | 10462:6425-6444 | MS.gene071630:intron | 25.0% |
| AAACAAGCATAAGAATACTC+TGG | - | 10462:4780-4799 | MS.gene07163:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | - | 10462:4779-4798 | MS.gene07163:intergenic | 30.0% | |
| ACTAATTCTGCTAAAAGCTT+AGG | + | 10462:6309-6328 | MS.gene071630:intron | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | 10462:5442-5461 | MS.gene071630:CDS | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | 10462:5568-5587 | MS.gene071630:intergenic | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | 10462:4323-4342 | MS.gene071630:intergenic | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | 10462:4198-4217 | MS.gene071630:intergenic | 30.0% | |
| CTCTTTCTTTAACTATGCTA+TGG | + | 10462:5098-5117 | MS.gene071630:intron | 30.0% | |
| GAATTTGCATTCTTAGTTTC+TGG | + | 10462:4111-4130 | MS.gene071630:CDS | 30.0% | |
| GACACTTTCTAAATTCCTAT+AGG | + | 10462:5136-5155 | MS.gene071630:intron | 30.0% | |
| GCCTTCCATAAAAATCTTAA+GGG | - | 10462:5567-5586 | MS.gene071630:intergenic | 30.0% | |
| GTAGGATAAAGAAAATACCT+GGG | - | 10462:5286-5305 | MS.gene071630:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | 10462:4197-4216 | MS.gene071630:CDS | 30.0% | |
| TGCTTCGAATATTCAAAACT+TGG | - | 10462:6560-6579 | MS.gene071630:intergenic | 30.0% | |
| TGTAGAATTGATATATCTGG+AGG | + | 10462:6086-6105 | MS.gene071630:intron | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | 10462:5287-5306 | MS.gene071630:intergenic | 30.0% | |
| TTGTTCAATCTTAATGTTCG+TGG | + | 10462:5826-5845 | MS.gene071630:intron | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | 10462:4957-4976 | MS.gene071630:CDS | 30.0% |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | 10462:5563-5582 | MS.gene071630:intron | 30.0% |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | 10462:5222-5241 | MS.gene071630:intergenic | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | 10462:6455-6474 | MS.gene071630:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | - | 10462:7054-7073 | MS.gene071630:intergenic | 30.0% |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | 10462:5952-5971 | MS.gene071630:intergenic | 30.0% |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | + | 10462:5694-5713 | MS.gene071630:intron | 30.0% |
| AAAGAAATCTGTGCATGGAA+TGG | - | 10462:5421-5440 | MS.gene07163:intergenic | 35.0% | |
| AACTATTGTCTCAAGGAATG+CGG | + | 10462:5768-5787 | MS.gene071630:CDS | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | 10462:5266-5285 | MS.gene071630:CDS | 35.0% | |
| ACAATGAGGAATATGTTTGG+AGG | + | 10462:6113-6132 | MS.gene071630:CDS | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | + | 10462:6783-6802 | MS.gene071630:intron | 35.0% | |
| AGCAATTAACTCAGCACTAA+AGG | - | 10462:5627-5646 | MS.gene071630:intergenic | 35.0% | |
| AGCTAACCCATTACTTTAGT+TGG | + | 10462:4374-4393 | MS.gene071630:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | 10462:6909-6928 | MS.gene071630:intergenic | 35.0% | |
| ATAAGTTGCAGCATCAATGA+GGG | - | 10462:5350-5369 | MS.gene071630:intergenic | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | 10462:5761-5780 | MS.gene071630:CDS | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | 10462:4930-4949 | MS.gene071630:intergenic | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | 10462:7194-7213 | MS.gene071630:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | 10462:5426-5445 | MS.gene071630:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | 10462:5424-5443 | MS.gene071630:intron | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | 10462:5645-5664 | MS.gene071630:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | 10462:4539-4558 | MS.gene071630:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | 10462:4537-4556 | MS.gene071630:intron | 35.0% | |
| CTTTCTAAATTCCTATAGGG+AGG | + | 10462:5140-5159 | MS.gene071630:intron | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | 10462:5233-5252 | MS.gene071630:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | 10462:5917-5936 | MS.gene071630:intergenic | 35.0% | |
| GAATGAGAATTACCGAAGTT+GGG | - | 10462:6494-6513 | MS.gene071630:intergenic | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | 10462:5194-5213 | MS.gene071630:CDS | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | - | 10462:6495-6514 | MS.gene071630:intergenic | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | 10462:4534-4553 | MS.gene071630:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | 10462:4612-4631 | MS.gene071630:intron | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | 10462:7098-7117 | MS.gene071630:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | 10462:6269-6288 | MS.gene071630:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | 10462:4944-4963 | MS.gene071630:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | 10462:5248-5267 | MS.gene071630:intergenic | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | 10462:5275-5294 | MS.gene071630:intergenic | 35.0% |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | 10462:4307-4326 | MS.gene071630:intergenic | 35.0% |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | 10462:5939-5958 | MS.gene071630:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | 10462:4366-4385 | MS.gene071630:intergenic | 35.0% |
| !! | CAATAGCTTTGACAACTTCT+CGG | - | 10462:7377-7396 | MS.gene071630:intergenic | 35.0% |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | 10462:5453-5472 | MS.gene071630:CDS | 35.0% |
| AACATTGCCTGGTTACCATT+TGG | + | 10462:4912-4931 | MS.gene071630:CDS | 40.0% | |
| AGAAACATGGGAAACCTGTT+CGG | - | 10462:5798-5817 | MS.gene071630:intergenic | 40.0% | |
| AGAGATTGAAAACACCTTGG+AGG | - | 10462:6906-6925 | MS.gene071630:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | 10462:7412-7431 | MS.gene071630:intergenic | 40.0% | |
| CAACAAAATGGACCCAACTT+CGG | + | 10462:6479-6498 | MS.gene071630:CDS | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | - | 10462:5351-5370 | MS.gene071630:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | 10462:6276-6295 | MS.gene071630:intergenic | 40.0% | |
| CGCACAATGAGGAATATGTT+TGG | + | 10462:6110-6129 | MS.gene071630:CDS | 40.0% | |
| GAACTGTGTGGTTAATGGTT+TGG | - | 10462:6264-6283 | MS.gene071630:intergenic | 40.0% | |
| TCAAATGCTTGACGACATGA+AGG | + | 10462:7073-7092 | MS.gene071630:CDS | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | 10462:5211-5230 | MS.gene071630:CDS | 40.0% | |
| TCTAAATTCCTATAGGGAGG+AGG | + | 10462:5143-5162 | MS.gene071630:intron | 40.0% | |
| TCTTATCACCACAGTCTGTT+TGG | + | 10462:4885-4904 | MS.gene071630:intron | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | 10462:7413-7432 | MS.gene071630:CDS | 40.0% | |
| TTATGGCAGCTATTGTCACA+GGG | - | 10462:7411-7430 | MS.gene071630:intergenic | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | 10462:4931-4950 | MS.gene071630:CDS | 40.0% | |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | 10462:6323-6342 | MS.gene071630:intron | 40.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | 10462:4234-4253 | MS.gene071630:CDS | 40.0% |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | 10462:7187-7206 | MS.gene071630:CDS | 40.0% |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | 10462:5964-5983 | MS.gene071630:CDS | 40.0% |
| ! | GTGGTTAATGGTTTGGAATG+TGG | - | 10462:6257-6276 | MS.gene071630:intergenic | 40.0% |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | 10462:5702-5721 | MS.gene071630:intron | 40.0% |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | 10462:4960-4979 | MS.gene071630:CDS | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | 10462:5745-5764 | MS.gene071630:CDS | 40.0% |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | 10462:6630-6649 | MS.gene071630:CDS | 40.0% |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | 10462:6273-6292 | MS.gene071630:intron | 40.0% |
| AATTCCTATAGGGAGGAGGA+TGG | + | 10462:5147-5166 | MS.gene071630:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | 10462:6604-6623 | MS.gene071630:intergenic | 45.0% | |
| AGAGTGAGGTCTACCATATG+AGG | - | 10462:4213-4232 | MS.gene071630:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | - | 10462:7404-7423 | MS.gene071630:intergenic | 45.0% | |
| ATCACCACAGTCTGTTTGGA+TGG | + | 10462:4889-4908 | MS.gene071630:intron | 45.0% | |
| ATGATGTGTGGCAGGTAACA+TGG | + | 10462:6656-6675 | MS.gene071630:intron | 45.0% | |
| CTACACTGACACATAGACAC+TGG | - | 10462:4723-4742 | MS.gene071630:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | 10462:4749-4768 | MS.gene071630:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | 10462:4748-4767 | MS.gene071630:intron | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | 10462:4219-4238 | MS.gene071630:CDS | 45.0% | |
| GTGCTTCTTTCCTCAGAATG+TGG | + | 10462:6591-6610 | MS.gene071630:intron | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | 10462:7410-7429 | MS.gene071630:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | 10462:6889-6908 | MS.gene071630:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | 10462:7342-7361 | MS.gene071630:intergenic | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | 10462:5485-5504 | MS.gene071630:CDS | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | 10462:4896-4915 | MS.gene071630:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | 10462:4901-4920 | MS.gene071630:CDS | 45.0% | |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | 10462:4145-4164 | MS.gene071630:intergenic | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | - | 10462:6591-6610 | MS.gene071630:intergenic | 45.0% |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | 10462:5701-5720 | MS.gene071630:intron | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | 10462:4126-4145 | MS.gene071630:CDS | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | + | 10462:6130-6149 | MS.gene071630:CDS | 45.0% |
| !! | AAGCACCGACATACACAACA+TGG | - | 10462:4756-4775 | MS.gene071630:intergenic | 45.0% |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | 10462:4083-4102 | MS.gene071630:CDS | 45.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | - | 10462:6840-6859 | MS.gene071630:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | 10462:7153-7172 | MS.gene071630:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | 10462:7154-7173 | MS.gene071630:intergenic | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | 10462:7336-7355 | MS.gene071630:intron | 50.0% | |
| CAGCTATTGTCACAGGGGTA+AGG | - | 10462:7405-7424 | MS.gene071630:intergenic | 50.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | 10462:4227-4246 | MS.gene071630:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | 10462:6841-6860 | MS.gene071630:intergenic | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | 10462:4922-4941 | MS.gene071630:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | 10462:4919-4938 | MS.gene071630:CDS | 50.0% | |
| CGACATCTCACCGACATATG+TGG | + | 10462:4662-4681 | MS.gene071630:intron | 50.0% | |
| GAAATTGAAGCCCTTCAGCC+TGG | - | 10462:5715-5734 | MS.gene071630:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | 10462:4253-4272 | MS.gene071630:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | 10462:6842-6861 | MS.gene071630:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | 10462:6634-6653 | MS.gene071630:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | 10462:5716-5735 | MS.gene071630:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | 10462:5868-5887 | MS.gene071630:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | + | 10462:6099-6118 | MS.gene071630:CDS | 50.0% | |
| TCAACGCGGCTTATGATGTG+TGG | + | 10462:6644-6663 | MS.gene071630:CDS | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | 10462:7145-7164 | MS.gene071630:CDS | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | 10462:6843-6862 | MS.gene071630:intergenic | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | 10462:7343-7362 | MS.gene071630:CDS | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | 10462:6815-6834 | MS.gene071630:intergenic | 50.0% |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | 10462:6801-6820 | MS.gene071630:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | 10462:6810-6829 | MS.gene071630:intergenic | 50.0% |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | 10462:5468-5487 | MS.gene071630:CDS | 50.0% |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | 10462:6824-6843 | MS.gene071630:intergenic | 55.0% | |
| AGGAATGCGGAATGCCGAAC+AGG | + | 10462:5781-5800 | MS.gene071630:CDS | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | 10462:6825-6844 | MS.gene071630:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAT+AGG | - | 10462:5154-5173 | MS.gene071630:intergenic | 55.0% | |
| CCTTCTCTCTGGATGCTCTG+CGG | + | 10462:5879-5898 | MS.gene071630:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | 10462:5880-5899 | MS.gene071630:CDS | 55.0% | |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | 10462:5881-5900 | MS.gene071630:intergenic | 55.0% |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | 10462:4240-4259 | MS.gene071630:CDS | 55.0% |
| CCAAAGACAGCTGACCCCCT+TGG | + | 10462:6823-6842 | MS.gene071630:CDS | 60.0% | |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | 10462:6826-6845 | MS.gene071630:intergenic | 60.0% | |
| CGCGGCTTATGATGTGTGGC+AGG | + | 10462:6648-6667 | MS.gene071630:CDS | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | 10462:5882-5901 | MS.gene071630:intergenic | 60.0% |
| CTCTCTGGATGCTCTGCGGG+TGG | + | 10462:5883-5902 | MS.gene071630:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | 10462:6830-6849 | MS.gene071630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10462 | gene | 4075 | 7446 | 4075 | ID=MS.gene071630 |
| 10462 | mRNA | 4075 | 7446 | 4075 | ID=MS.gene071630.t1;Parent=MS.gene071630 |
| 10462 | exon | 4075 | 4261 | 4075 | ID=MS.gene071630.t1.exon1;Parent=MS.gene071630.t1 |
| 10462 | CDS | 4075 | 4261 | 4075 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 4899 | 4981 | 4899 | ID=MS.gene071630.t1.exon2;Parent=MS.gene071630.t1 |
| 10462 | CDS | 4899 | 4981 | 4899 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 5158 | 5287 | 5158 | ID=MS.gene071630.t1.exon3;Parent=MS.gene071630.t1 |
| 10462 | CDS | 5158 | 5287 | 5158 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 5433 | 5506 | 5433 | ID=MS.gene071630.t1.exon4;Parent=MS.gene071630.t1 |
| 10462 | CDS | 5433 | 5506 | 5433 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 5716 | 5802 | 5716 | ID=MS.gene071630.t1.exon5;Parent=MS.gene071630.t1 |
| 10462 | CDS | 5716 | 5802 | 5716 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 5877 | 6001 | 5877 | ID=MS.gene071630.t1.exon6;Parent=MS.gene071630.t1 |
| 10462 | CDS | 5877 | 6001 | 5877 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 6091 | 6151 | 6091 | ID=MS.gene071630.t1.exon7;Parent=MS.gene071630.t1 |
| 10462 | CDS | 6091 | 6151 | 6091 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 6447 | 6500 | 6447 | ID=MS.gene071630.t1.exon8;Parent=MS.gene071630.t1 |
| 10462 | CDS | 6447 | 6500 | 6447 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 6592 | 6669 | 6592 | ID=MS.gene071630.t1.exon9;Parent=MS.gene071630.t1 |
| 10462 | CDS | 6592 | 6669 | 6592 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 6805 | 6910 | 6805 | ID=MS.gene071630.t1.exon10;Parent=MS.gene071630.t1 |
| 10462 | CDS | 6805 | 6910 | 6805 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 7063 | 7208 | 7063 | ID=MS.gene071630.t1.exon11;Parent=MS.gene071630.t1 |
| 10462 | CDS | 7063 | 7208 | 7063 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| 10462 | exon | 7339 | 7446 | 7339 | ID=MS.gene071630.t1.exon12;Parent=MS.gene071630.t1 |
| 10462 | CDS | 7339 | 7446 | 7339 | ID=cds.MS.gene071630.t1;Parent=MS.gene071630.t1 |
| Gene Sequence |
| Protein sequence |
