AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050805


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050805.t1 MTR_7g111280 94.885 391 12 3 1 390 1 384 0.0 767
MS.gene050805.t1 MTR_1g085070 71.355 391 87 5 1 390 1 367 0.0 563
MS.gene050805.t1 MTR_7g110900 71.903 331 93 0 59 389 49 379 0.0 531
MS.gene050805.t1 MTR_4g124320 64.962 391 118 2 3 390 12 386 0.0 531
MS.gene050805.t1 MTR_7g110900 71.903 331 93 0 59 389 49 379 0.0 530
MS.gene050805.t1 MTR_1g085620 68.182 352 110 1 41 390 17 368 0.0 521
MS.gene050805.t1 MTR_4g124320 64.194 310 92 2 3 309 12 305 4.91e-145 415
MS.gene050805.t1 MTR_1g085620 69.962 263 79 0 128 390 1 263 4.53e-143 409
MS.gene050805.t1 MTR_8g072010 52.199 341 159 2 52 390 19 357 9.96e-134 389
MS.gene050805.t1 MTR_8g072000 50.909 330 160 1 60 387 26 355 5.86e-127 371
MS.gene050805.t1 MTR_8g072000 50.909 330 160 1 60 387 57 386 1.47e-126 371
MS.gene050805.t1 MTR_1g101000 52.836 335 153 3 60 389 37 371 3.20e-126 369
MS.gene050805.t1 MTR_1g101020 52.836 335 153 3 60 389 37 371 1.78e-125 368
MS.gene050805.t1 MTR_1g101000 52.836 335 153 3 60 389 37 371 2.05e-125 368
MS.gene050805.t1 MTR_1g101000 52.836 335 153 3 60 389 37 371 2.84e-125 368
MS.gene050805.t1 MTR_5g042650 49.849 331 160 2 61 389 28 354 3.21e-121 357
MS.gene050805.t1 MTR_7g060760 49.699 332 161 2 61 390 56 383 7.49e-120 354
MS.gene050805.t1 MTR_1g036590 60.000 80 32 0 243 322 271 350 9.12e-25 105
MS.gene050805.t1 MTR_7g006750 50.000 94 47 0 201 294 467 560 1.45e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050805.t1 AT3G05910 67.624 383 118 2 8 390 4 380 0.0 559
MS.gene050805.t1 AT5G26670 68.286 391 113 3 1 390 1 381 0.0 553
MS.gene050805.t1 AT1G57590 73.333 330 88 0 61 390 79 408 0.0 533
MS.gene050805.t1 AT3G62060 61.323 393 132 3 4 390 5 383 0.0 513
MS.gene050805.t1 AT3G62060 61.323 393 132 3 4 390 5 383 0.0 512
MS.gene050805.t1 AT2G46930 59.845 386 137 3 5 390 14 381 9.02e-177 498
MS.gene050805.t1 AT1G09550 58.475 354 143 2 40 390 17 369 2.41e-155 443
MS.gene050805.t1 AT3G05910 64.725 309 103 2 8 316 4 306 1.07e-149 426
MS.gene050805.t1 AT5G26670 72.243 263 73 0 128 390 1 263 4.24e-146 416
MS.gene050805.t1 AT5G26670 72.243 263 73 0 128 390 1 263 4.24e-146 416
MS.gene050805.t1 AT5G26670 72.243 263 73 0 128 390 1 263 4.24e-146 416
MS.gene050805.t1 AT4G19420 53.982 339 154 1 51 387 14 352 2.32e-137 398
MS.gene050805.t1 AT4G19420 53.982 339 154 1 51 387 14 352 2.32e-137 398
MS.gene050805.t1 AT4G19420 53.666 341 156 1 49 387 12 352 2.96e-137 399
MS.gene050805.t1 AT5G23870 52.994 334 152 3 62 390 35 368 1.27e-132 386
MS.gene050805.t1 AT5G23870 52.994 334 152 3 62 390 35 368 1.27e-132 386
MS.gene050805.t1 AT5G23870 52.994 334 152 3 62 390 35 368 2.00e-132 387
MS.gene050805.t1 AT5G23870 52.994 334 152 3 62 390 35 368 2.68e-132 387
MS.gene050805.t1 AT5G45280 50.000 330 163 1 62 389 24 353 3.86e-126 369
MS.gene050805.t1 AT3G09410 46.429 392 192 4 2 390 16 392 4.97e-126 369
MS.gene050805.t1 AT3G09410 46.429 392 192 4 2 390 16 392 3.90e-125 368
MS.gene050805.t1 AT4G19410 49.091 330 166 1 62 389 24 353 2.48e-123 362
MS.gene050805.t1 AT4G19410 49.091 330 166 1 62 389 24 353 2.64e-122 363
MS.gene050805.t1 AT3G09405 44.133 392 192 4 2 390 13 380 8.89e-119 351
MS.gene050805.t1 AT5G45280 52.128 282 133 1 62 341 24 305 5.51e-110 327
MS.gene050805.t1 AT4G19420 56.522 230 98 1 51 278 14 243 5.06e-91 276
MS.gene050805.t1 AT3G09405 47.445 274 139 2 120 390 2 273 6.29e-91 276

Find 98 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATCACCAACTTGGTTTA+TGG 0.071657 7.1:+4246430 MS.gene050805:CDS
AATTCAGAGGACAGCGAATT+TGG 0.187648 7.1:+4247588 MS.gene050805:CDS
GCTAATCAGGCTCTTCTTTC+CGG 0.191020 7.1:+4247653 MS.gene050805:CDS
ATACATCACCTTGCAGAAAT+TGG 0.207626 7.1:-4248705 None:intergenic
CAGACAATTCTCCGGTTATT+AGG 0.224305 7.1:+4248947 MS.gene050805:CDS
AATGGAAGATTTGATGTTAA+AGG 0.242008 7.1:+4247619 MS.gene050805:CDS
TGTGATGGTGGCTCATTTAC+TGG 0.246928 7.1:+4247201 MS.gene050805:CDS
TACCATTTGCATCGTGGATA+TGG 0.251407 7.1:+4246718 MS.gene050805:CDS
TTGGTTTATGGGTTTGAATT+AGG 0.260228 7.1:+4246442 MS.gene050805:CDS
TATGGGTTTGAATTAGGATA+TGG 0.270691 7.1:+4246448 MS.gene050805:CDS
TTATCACCAACTTGGTTTAT+GGG 0.298292 7.1:+4246431 MS.gene050805:CDS
TCAATACTGCTTATGATTCA+TGG 0.299224 7.1:+4248346 MS.gene050805:CDS
TGAAGAACTCTTTCTGTTAG+AGG 0.300195 7.1:+4246501 MS.gene050805:CDS
CAGTTGGCTTGTTAATTTAG+AGG 0.330535 7.1:+4246753 MS.gene050805:CDS
AATTATAGGATTGATATATC+TGG 0.336116 7.1:+4247896 MS.gene050805:intron
TAGCAGCTGCATTGTGGATA+AGG 0.344441 7.1:-4246585 None:intergenic
ATGGAAGATTTGATGTTAAA+GGG 0.348581 7.1:+4247620 MS.gene050805:CDS
CACTTCACTTTAGTAGTCCT+TGG 0.363666 7.1:-4247734 None:intergenic
CCTTGCAGAAATTGGATTTG+TGG 0.382065 7.1:-4248697 None:intergenic
TTCACCTTGTTCCTAATAAC+CGG 0.384001 7.1:-4248958 None:intergenic
CAGCAGATCCCCATGGCTAT+TGG 0.396660 7.1:+4248638 MS.gene050805:CDS
CTTCTTTCCGGATGTTCAGC+GGG 0.402249 7.1:+4247665 MS.gene050805:CDS
ATTCAGAGGACAGCGAATTT+GGG 0.404061 7.1:+4247589 MS.gene050805:CDS
CAACACCACTGTACATATTC+CGG 0.405411 7.1:-4247931 None:intergenic
TTACTAAGTATTCCTGTGAA+TGG 0.407702 7.1:-4247019 None:intergenic
ATGTATCTTGCCTCTCGGTT+TGG 0.417685 7.1:-4248918 None:intergenic
AGCAGCTGCATTGTGGATAA+GGG 0.417871 7.1:-4246584 None:intergenic
GCATCCTTTCTTGAGGGTAA+TGG 0.436523 7.1:+4246538 MS.gene050805:CDS
TTGGTTTCTTGCAGTGTGCT+TGG 0.438110 7.1:+4246678 MS.gene050805:intron
AATATGTACAGTGGTGTTGT+AGG 0.448233 7.1:+4247935 MS.gene050805:CDS
TAGGCCACCCGCTGAACATC+CGG 0.448568 7.1:-4247672 None:intergenic
GCGAATTTGGGCAGCTGCAA+TGG 0.455500 7.1:+4247601 MS.gene050805:CDS
TACTGGAGATGGTGAAGATC+AGG 0.456973 7.1:+4247218 MS.gene050805:CDS
TTTCTTGCAGTGTGCTTGGA+TGG 0.462046 7.1:+4246682 MS.gene050805:intron
GTCTCTTGAATACAGGGTTC+AGG 0.466892 7.1:+4248815 MS.gene050805:intron
AATAAACCTGAAGAAAATCC+AGG 0.477981 7.1:+4247040 MS.gene050805:CDS
ATCCACAATGCAGCTGCTAA+AGG 0.480879 7.1:+4246589 MS.gene050805:CDS
GTGAAGTGTCTTAGCGATGC+AGG 0.481043 7.1:+4247749 MS.gene050805:CDS
ATTTCCATTACCCTCAAGAA+AGG 0.487996 7.1:-4246542 None:intergenic
TTCTCAAGATCAAACAAGAA+TGG 0.489491 7.1:+4248865 MS.gene050805:CDS
TTGCATCGTGGATATGGATC+AGG 0.495342 7.1:+4246724 MS.gene050805:CDS
AATTTCGAGGTCTCTTTCCA+AGG 0.497114 7.1:+4247717 MS.gene050805:CDS
ATCATCATTATACATGGAAA+AGG 0.501178 7.1:+4246991 MS.gene050805:CDS
CTCCTTTAGCAGCTGCATTG+TGG 0.510189 7.1:-4246591 None:intergenic
TGCATTCATGCCAATAGCCA+TGG 0.510756 7.1:-4248648 None:intergenic
ATCCATATCCACGATGCAAA+TGG 0.517887 7.1:-4246720 None:intergenic
CATGCAGCATCCTTTCTTGA+GGG 0.518276 7.1:+4246532 MS.gene050805:CDS
ATACACTGTGATGAATTTCG+AGG 0.519543 7.1:+4247704 MS.gene050805:CDS
ACCCAGAAAAGTTTAGCCAT+TGG 0.528435 7.1:-4246388 None:intergenic
TAGCCATGGGGATCTGCTGA+TGG 0.530490 7.1:-4248634 None:intergenic
AGGACTTGTTATCACCAACT+TGG 0.533797 7.1:+4246423 MS.gene050805:CDS
CCACGATGCAAATGGTAACC+AGG 0.545374 7.1:-4246712 None:intergenic
GCATTCATGCCAATAGCCAT+GGG 0.548266 7.1:-4248647 None:intergenic
TATCTGGCGAGCGCACCCTC+CGG 0.549827 7.1:+4247912 MS.gene050805:CDS
GTAAAGCTTCGTTATTGTGA+TGG 0.550885 7.1:+4247186 MS.gene050805:CDS
CAGTGGTGTTGTAGGGATGC+AGG 0.553790 7.1:+4247943 MS.gene050805:CDS
TGCTTGGATGGAACATTACC+TGG 0.558834 7.1:+4246694 MS.gene050805:CDS
TTCAAACCCATAAACCAAGT+TGG 0.559248 7.1:-4246437 None:intergenic
AATGCAGCTGCTAAAGGAGC+AGG 0.563358 7.1:+4246595 MS.gene050805:CDS
AAACCGAGAGGCAAGATACA+TGG 0.565165 7.1:+4248920 MS.gene050805:CDS
GCGTGGATCATCATTATACA+TGG 0.565339 7.1:+4246985 MS.gene050805:CDS
TACTGCTTATGATTCATGGC+AGG 0.565480 7.1:+4248350 MS.gene050805:CDS
TCTTCTTTCCGGATGTTCAG+CGG 0.565522 7.1:+4247664 MS.gene050805:CDS
GTGGCCTTGTGCATTTAGCA+TGG 0.567737 7.1:-4248678 None:intergenic
GTGTTTATCGCAAGAAAACA+CGG 0.570483 7.1:+4246963 MS.gene050805:CDS
ACATGCAGCATCCTTTCTTG+AGG 0.576567 7.1:+4246531 MS.gene050805:CDS
CACAGTGTATAATAGTAGCT+AGG 0.579094 7.1:-4247691 None:intergenic
GGTGGCTCATTTACTGGAGA+TGG 0.581728 7.1:+4247207 MS.gene050805:CDS
TCTAACTGTCATCAGGGAGG+TGG 0.582270 7.1:+4246917 MS.gene050805:intron
ACACTGGCAATCAAATTCTG+AGG 0.583315 7.1:-4248303 None:intergenic
ATGATTATGATTACCGAGGT+AGG 0.584023 7.1:-4248138 None:intergenic
ATGGATCAGGAGCAAACAGT+TGG 0.589134 7.1:+4246737 MS.gene050805:CDS
CACTGGCAATCAAATTCTGA+GGG 0.591267 7.1:-4248302 None:intergenic
CTTTCCGGATGTTCAGCGGG+TGG 0.596559 7.1:+4247668 MS.gene050805:CDS
GAAAAGGAGATACCATTCAC+AGG 0.596897 7.1:+4247007 MS.gene050805:CDS
AAACCATGTATCTTGCCTCT+CGG 0.596928 7.1:-4248923 None:intergenic
AAGCTTCGTTATTGTGATGG+TGG 0.600562 7.1:+4247189 MS.gene050805:CDS
TGAAGTGTCTTAGCGATGCA+GGG 0.608865 7.1:+4247750 MS.gene050805:CDS
CCTGGTTACCATTTGCATCG+TGG 0.609738 7.1:+4246712 MS.gene050805:CDS
TGATTACCGAGGTAGGATCA+AGG 0.612410 7.1:-4248131 None:intergenic
ATATGTACAGTGGTGTTGTA+GGG 0.613917 7.1:+4247936 MS.gene050805:CDS
CCATGGGGATCTGCTGATGG+AGG 0.617825 7.1:-4248631 None:intergenic
ACTGTCATCAGGGAGGTGGA+TGG 0.626588 7.1:+4246921 MS.gene050805:intron
AGGGTGAGTCCTACGAGCAG+AGG 0.626989 7.1:-4246565 None:intergenic
TTCTCCGGTTATTAGGAACA+AGG 0.636482 7.1:+4248954 MS.gene050805:CDS
CACCACTGTACATATTCCGG+AGG 0.638914 7.1:-4247928 None:intergenic
AATGGAAATCCTCTGCTCGT+AGG 0.640827 7.1:+4246556 MS.gene050805:CDS
CCTCCATCAGCAGATCCCCA+TGG 0.647413 7.1:+4248631 MS.gene050805:CDS
CCACAAATCCAATTTCTGCA+AGG 0.649408 7.1:+4248697 MS.gene050805:CDS
TAATCACCTTGATCCTACCT+CGG 0.661838 7.1:+4248125 MS.gene050805:CDS
GAAGCAGAACTGCAATTCAG+AGG 0.664323 7.1:+4247575 MS.gene050805:CDS
ACCACTGTACATATTCCGGA+GGG 0.680732 7.1:-4247927 None:intergenic
TATCGCAAGAAAACACGGCG+TGG 0.683797 7.1:+4246968 MS.gene050805:CDS
AGGTGATTAGTACAAATCTG+TGG 0.684849 7.1:-4248111 None:intergenic
TCGCTCACTGCCAAACCGAG+AGG 0.692246 7.1:+4248908 MS.gene050805:CDS
TAAACCATGCTAAATGCACA+AGG 0.692567 7.1:+4248674 MS.gene050805:CDS
ACCCTCCGGAATATGTACAG+TGG 0.725020 7.1:+4247926 MS.gene050805:CDS
CATTCATGCCAATAGCCATG+GGG 0.744235 7.1:-4248646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTAAAATTTGATATTT+TGG + chr7.1:4247330-4247349 MS.gene050805:intron 10.0%
!!! ATTAATTTTTTTTGTAATGA+TGG - chr7.1:4247843-4247862 None:intergenic 10.0%
!!! TATGTAAAATTTGATATTTT+GGG + chr7.1:4247331-4247350 MS.gene050805:intron 10.0%
!!! TTAGAAATAATTAAAGTTTT+AGG + chr7.1:4246891-4246910 MS.gene050805:intron 10.0%
!! AAATAGTTTATATTCTTTCA+TGG + chr7.1:4248003-4248022 MS.gene050805:intron 15.0%
!! AATGAAATGATTAAATGTAT+CGG + chr7.1:4248501-4248520 MS.gene050805:intron 15.0%
!! ACATTTAATCATTTCATTAT+CGG - chr7.1:4248499-4248518 None:intergenic 15.0%
!! ATAAACTATTTGTAATAAGT+TGG - chr7.1:4247994-4248013 None:intergenic 15.0%
!! ATGTAAAAATTAATTACACT+AGG + chr7.1:4247250-4247269 MS.gene050805:intron 15.0%
!! CAAAAATATTTAATATTGAG+AGG - chr7.1:4246661-4246680 None:intergenic 15.0%
!! TTATTACTATATTATTCAGT+TGG + chr7.1:4248777-4248796 MS.gene050805:intron 15.0%
!!! CTCTCAATATTAAATATTTT+TGG + chr7.1:4246659-4246678 MS.gene050805:intron 15.0%
!!! TTGCTTTTTTAATTTGTTAT+AGG + chr7.1:4247101-4247120 MS.gene050805:intron 15.0%
!! AAATAATAGTATATGAGATG+TGG + chr7.1:4248426-4248445 MS.gene050805:intron 20.0%
!! AATTATAGGATTGATATATC+TGG + chr7.1:4247896-4247915 MS.gene050805:intron 20.0%
!! AATTGAATGAAAATTAAACC+TGG - chr7.1:4247061-4247080 None:intergenic 20.0%
!! ATATTTAATATTGAGAGGAA+AGG - chr7.1:4246656-4246675 None:intergenic 20.0%
!! TTTGTTTGCATTGAAATTAT+AGG + chr7.1:4247882-4247901 MS.gene050805:intron 20.0%
!!! AATTTGCAGATTTTTTCAAT+TGG + chr7.1:4247157-4247176 MS.gene050805:intron 20.0%
!!! AGTTAACTTTTATGCAAAAA+AGG - chr7.1:4247395-4247414 None:intergenic 20.0%
!!! TCTTTTCTTTTCTTTTCTTT+TGG + chr7.1:4246805-4246824 MS.gene050805:intron 20.0%
! AATATCCTAAGTTTGTCAAT+TGG + chr7.1:4248375-4248394 MS.gene050805:intron 25.0%
! AATGGAAGATTTGATGTTAA+AGG + chr7.1:4247619-4247638 MS.gene050805:CDS 25.0%
! ATCATCATTATACATGGAAA+AGG + chr7.1:4246991-4247010 MS.gene050805:CDS 25.0%
! ATGGAAGATTTGATGTTAAA+GGG + chr7.1:4247620-4247639 MS.gene050805:CDS 25.0%
! ATTATTTGTTTGATCACTGT+AGG + chr7.1:4248071-4248090 MS.gene050805:intron 25.0%
! TGAAAAAGGAGTAATAAAAC+AGG - chr7.1:4248273-4248292 None:intergenic 25.0%
!! ATTTTCAGTTAATTATGCCA+TGG - chr7.1:4246869-4246888 None:intergenic 25.0%
!! TTTTATGCAAAAAAGGATAC+AGG - chr7.1:4247388-4247407 None:intergenic 25.0%
!! TTTTGTAATGATGGTAGAAA+TGG - chr7.1:4247834-4247853 None:intergenic 25.0%
!!! TAGAGGTATTTCTTCTTATT+TGG + chr7.1:4246770-4246789 MS.gene050805:intron 25.0%
!!! TTCAGTTTTGTCAAATAGTT+AGG + chr7.1:4248172-4248191 MS.gene050805:intron 25.0%
AACATTGGACACTATACTAA+CGG + chr7.1:4248459-4248478 MS.gene050805:intron 30.0%
AATAAACCTGAAGAAAATCC+AGG + chr7.1:4247040-4247059 MS.gene050805:CDS 30.0%
ACATGGTTGTAACATTTGTA+AGG + chr7.1:4248038-4248057 MS.gene050805:intron 30.0%
AGGTTGTATTGTTTGTTTGT+AGG - chr7.1:4246626-4246645 None:intergenic 30.0%
ATCAATGATTATGATTACCG+AGG - chr7.1:4248145-4248164 None:intergenic 30.0%
TATGGGTTTGAATTAGGATA+TGG + chr7.1:4246448-4246467 MS.gene050805:CDS 30.0%
TCAATACTGCTTATGATTCA+TGG + chr7.1:4248346-4248365 MS.gene050805:CDS 30.0%
TTACTAAGTATTCCTGTGAA+TGG - chr7.1:4247022-4247041 None:intergenic 30.0%
TTATCACCAACTTGGTTTAT+GGG + chr7.1:4246431-4246450 MS.gene050805:CDS 30.0%
TTCTCAAGATCAAACAAGAA+TGG + chr7.1:4248865-4248884 MS.gene050805:CDS 30.0%
TTGGTTTATGGGTTTGAATT+AGG + chr7.1:4246442-4246461 MS.gene050805:CDS 30.0%
TTTAATATTGAGAGGAAAGG+TGG - chr7.1:4246653-4246672 None:intergenic 30.0%
! ATTAAACCTGGATTTTCTTC+AGG - chr7.1:4247049-4247068 None:intergenic 30.0%
! CATGGCTATGTTATTTAACA+TGG + chr7.1:4248021-4248040 MS.gene050805:intron 30.0%
! CTTTATTTACGTATGTTGTC+TGG + chr7.1:4247544-4247563 MS.gene050805:intron 30.0%
AAAAAGTGGTGTTCTAACAC+TGG - chr7.1:4248322-4248341 None:intergenic 35.0%
AATGATGGTAGAAATGGCAT+TGG - chr7.1:4247828-4247847 None:intergenic 35.0%
AGGATTTCTAACTGTCATCA+GGG + chr7.1:4246911-4246930 MS.gene050805:intron 35.0%
AGGTGATTAGTACAAATCTG+TGG - chr7.1:4248114-4248133 None:intergenic 35.0%
ATACACTGTGATGAATTTCG+AGG + chr7.1:4247704-4247723 MS.gene050805:CDS 35.0%
ATACATCACCTTGCAGAAAT+TGG - chr7.1:4248708-4248727 None:intergenic 35.0%
ATGAGCAACAATAACATGAG+AGG - chr7.1:4247133-4247152 None:intergenic 35.0%
ATGATTATGATTACCGAGGT+AGG - chr7.1:4248141-4248160 None:intergenic 35.0%
ATTTCCATTACCCTCAAGAA+AGG - chr7.1:4246545-4246564 None:intergenic 35.0%
CAAAAAAGGATACAGGTCTA+CGG - chr7.1:4247381-4247400 None:intergenic 35.0%
CAAGTCATGTATCTCAACAA+TGG - chr7.1:4247480-4247499 None:intergenic 35.0%
CACAGTGTATAATAGTAGCT+AGG - chr7.1:4247694-4247713 None:intergenic 35.0%
CTTGACTGAATCTGATAACA+AGG - chr7.1:4248604-4248623 None:intergenic 35.0%
GACTACCAATTGACAAACTT+AGG - chr7.1:4248383-4248402 None:intergenic 35.0%
GTAAAGCTTCGTTATTGTGA+TGG + chr7.1:4247186-4247205 MS.gene050805:CDS 35.0%
GTGTTTATCGCAAGAAAACA+CGG + chr7.1:4246963-4246982 MS.gene050805:CDS 35.0%
GTTATCACCAACTTGGTTTA+TGG + chr7.1:4246430-4246449 MS.gene050805:CDS 35.0%
TAAACCATGCTAAATGCACA+AGG + chr7.1:4248674-4248693 MS.gene050805:CDS 35.0%
TAGGATTTCTAACTGTCATC+AGG + chr7.1:4246910-4246929 MS.gene050805:intron 35.0%
TGAAGAACTCTTTCTGTTAG+AGG + chr7.1:4246501-4246520 MS.gene050805:CDS 35.0%
TGGTATTCTTGTGATTAGTG+TGG - chr7.1:4247974-4247993 None:intergenic 35.0%
TGTAACATGCATATATGCCA+TGG + chr7.1:4246849-4246868 MS.gene050805:intron 35.0%
TTAGTACCATTCATTGCAAG+TGG + chr7.1:4248733-4248752 MS.gene050805:intron 35.0%
TTCAAACCCATAAACCAAGT+TGG - chr7.1:4246440-4246459 None:intergenic 35.0%
! ATGGTTTTCAGACAATTCTC+CGG + chr7.1:4248939-4248958 MS.gene050805:CDS 35.0%
! GCAGTATTGAGAAGAAAAAG+TGG - chr7.1:4248336-4248355 None:intergenic 35.0%
! TTCTGGGTTTTCATTGCAAT+AGG + chr7.1:4246403-4246422 MS.gene050805:CDS 35.0%
! TTTTCTCCACTTGCAATGAA+TGG - chr7.1:4248742-4248761 None:intergenic 35.0%
!! AATATGTACAGTGGTGTTGT+AGG + chr7.1:4247935-4247954 MS.gene050805:CDS 35.0%
!! ATATGTACAGTGGTGTTGTA+GGG + chr7.1:4247936-4247955 MS.gene050805:CDS 35.0%
!! CAGTTGGCTTGTTAATTTAG+AGG + chr7.1:4246753-4246772 MS.gene050805:CDS 35.0%
AAACCATGTATCTTGCCTCT+CGG - chr7.1:4248926-4248945 None:intergenic 40.0%
AAGCTTCGTTATTGTGATGG+TGG + chr7.1:4247189-4247208 MS.gene050805:CDS 40.0%
AATTCAGAGGACAGCGAATT+TGG + chr7.1:4247588-4247607 MS.gene050805:CDS 40.0%
AATTTCGAGGTCTCTTTCCA+AGG + chr7.1:4247717-4247736 MS.gene050805:CDS 40.0%
ACACTGGCAATCAAATTCTG+AGG - chr7.1:4248306-4248325 None:intergenic 40.0%
AGCAGAAACTTGTAAGAGCA+AGG + chr7.1:4247433-4247452 MS.gene050805:intron 40.0%
ATCCATATCCACGATGCAAA+TGG - chr7.1:4246723-4246742 None:intergenic 40.0%
ATTCAGAGGACAGCGAATTT+GGG + chr7.1:4247589-4247608 MS.gene050805:CDS 40.0%
ATTTCTAACTGTCATCAGGG+AGG + chr7.1:4246914-4246933 MS.gene050805:intron 40.0%
CAACACCACTGTACATATTC+CGG - chr7.1:4247934-4247953 None:intergenic 40.0%
CACTGGCAATCAAATTCTGA+GGG - chr7.1:4248305-4248324 None:intergenic 40.0%
CACTTCACTTTAGTAGTCCT+TGG - chr7.1:4247737-4247756 None:intergenic 40.0%
CAGACAATTCTCCGGTTATT+AGG + chr7.1:4248947-4248966 MS.gene050805:CDS 40.0%
CCACAAATCCAATTTCTGCA+AGG + chr7.1:4248697-4248716 MS.gene050805:CDS 40.0%
CCTTGCAGAAATTGGATTTG+TGG - chr7.1:4248700-4248719 None:intergenic 40.0%
GAAAAGGAGATACCATTCAC+AGG + chr7.1:4247007-4247026 MS.gene050805:CDS 40.0%
GACTGAATCTGATAACAAGG+AGG - chr7.1:4248601-4248620 None:intergenic 40.0%
GAGGGAAGAAACACTGAAAA+AGG - chr7.1:4248287-4248306 None:intergenic 40.0%
GCGTGGATCATCATTATACA+TGG + chr7.1:4246985-4247004 MS.gene050805:CDS 40.0%
TAATCACCTTGATCCTACCT+CGG + chr7.1:4248125-4248144 MS.gene050805:CDS 40.0%
TACCATTTGCATCGTGGATA+TGG + chr7.1:4246718-4246737 MS.gene050805:CDS 40.0%
TACTGCTTATGATTCATGGC+AGG + chr7.1:4248350-4248369 MS.gene050805:CDS 40.0%
TAGGTAACTGACTGACAAAC+TGG + chr7.1:4247269-4247288 MS.gene050805:intron 40.0%
TGAACCCTGTATTCAAGAGA+CGG - chr7.1:4248816-4248835 None:intergenic 40.0%
TGTGGCAGTAACACAAACAT+TGG + chr7.1:4248444-4248463 MS.gene050805:intron 40.0%
! GGGAATGCATTTTGCTAATC+AGG + chr7.1:4247640-4247659 MS.gene050805:CDS 40.0%
!! AGGACTTGTTATCACCAACT+TGG + chr7.1:4246423-4246442 MS.gene050805:CDS 40.0%
AAACCGAGAGGCAAGATACA+TGG + chr7.1:4248920-4248939 MS.gene050805:CDS 45.0%
AATGGAAATCCTCTGCTCGT+AGG + chr7.1:4246556-4246575 MS.gene050805:CDS 45.0%
ACATGCAGCATCCTTTCTTG+AGG + chr7.1:4246531-4246550 MS.gene050805:CDS 45.0%
ACCACTGTACATATTCCGGA+GGG - chr7.1:4247930-4247949 None:intergenic 45.0%
AGCAGCTGCATTGTGGATAA+GGG - chr7.1:4246587-4246606 None:intergenic 45.0%
AGTGTCGTGTCAATGCTACA+TGG + chr7.1:4248532-4248551 MS.gene050805:intron 45.0%
ATCCACAATGCAGCTGCTAA+AGG + chr7.1:4246589-4246608 MS.gene050805:CDS 45.0%
ATGGATCAGGAGCAAACAGT+TGG + chr7.1:4246737-4246756 MS.gene050805:CDS 45.0%
ATGTATCTTGCCTCTCGGTT+TGG - chr7.1:4248921-4248940 None:intergenic 45.0%
CATGCAGCATCCTTTCTTGA+GGG + chr7.1:4246532-4246551 MS.gene050805:CDS 45.0%
CATTCATGCCAATAGCCATG+GGG - chr7.1:4248649-4248668 None:intergenic 45.0%
GAAGCAGAACTGCAATTCAG+AGG + chr7.1:4247575-4247594 MS.gene050805:CDS 45.0%
GCATCCTTTCTTGAGGGTAA+TGG + chr7.1:4246538-4246557 MS.gene050805:CDS 45.0%
GCATTCATGCCAATAGCCAT+GGG - chr7.1:4248650-4248669 None:intergenic 45.0%
GCTAATCAGGCTCTTCTTTC+CGG + chr7.1:4247653-4247672 MS.gene050805:CDS 45.0%
GTCTCTTGAATACAGGGTTC+AGG + chr7.1:4248815-4248834 MS.gene050805:intron 45.0%
TACTGGAGATGGTGAAGATC+AGG + chr7.1:4247218-4247237 MS.gene050805:CDS 45.0%
TAGCAGCTGCATTGTGGATA+AGG - chr7.1:4246588-4246607 None:intergenic 45.0%
TCTTCTTTCCGGATGTTCAG+CGG + chr7.1:4247664-4247683 MS.gene050805:CDS 45.0%
TGATTACCGAGGTAGGATCA+AGG - chr7.1:4248134-4248153 None:intergenic 45.0%
TGCATTCATGCCAATAGCCA+TGG - chr7.1:4248651-4248670 None:intergenic 45.0%
TGCTTGGATGGAACATTACC+TGG + chr7.1:4246694-4246713 MS.gene050805:CDS 45.0%
TTCGCCGTCTCTTGAATACA+GGG + chr7.1:4248809-4248828 MS.gene050805:intron 45.0%
TTGAGAGGAAAGGTGGAGAA+AGG - chr7.1:4246646-4246665 None:intergenic 45.0%
TTGCATCGTGGATATGGATC+AGG + chr7.1:4246724-4246743 MS.gene050805:CDS 45.0%
TTGGTTTCTTGCAGTGTGCT+TGG + chr7.1:4246678-4246697 MS.gene050805:intron 45.0%
TTTCGCCGTCTCTTGAATAC+AGG + chr7.1:4248808-4248827 MS.gene050805:intron 45.0%
TTTCTTGCAGTGTGCTTGGA+TGG + chr7.1:4246682-4246701 MS.gene050805:intron 45.0%
! TGAAGTGTCTTAGCGATGCA+GGG + chr7.1:4247750-4247769 MS.gene050805:CDS 45.0%
!! TGTGATGGTGGCTCATTTAC+TGG + chr7.1:4247201-4247220 MS.gene050805:CDS 45.0%
AATGCAGCTGCTAAAGGAGC+AGG + chr7.1:4246595-4246614 MS.gene050805:CDS 50.0%
ACCCTCCGGAATATGTACAG+TGG + chr7.1:4247926-4247945 MS.gene050805:CDS 50.0%
CACCACTGTACATATTCCGG+AGG - chr7.1:4247931-4247950 None:intergenic 50.0%
CCACGATGCAAATGGTAACC+AGG - chr7.1:4246715-4246734 None:intergenic 50.0%
CCTGGTTACCATTTGCATCG+TGG + chr7.1:4246712-4246731 MS.gene050805:CDS 50.0%
CGTATGTTGTCTGGTGAGAC+AGG + chr7.1:4247553-4247572 MS.gene050805:intron 50.0%
CTCCTTTAGCAGCTGCATTG+TGG - chr7.1:4246594-4246613 None:intergenic 50.0%
CTTCTTTCCGGATGTTCAGC+GGG + chr7.1:4247665-4247684 MS.gene050805:CDS 50.0%
GGTGGCTCATTTACTGGAGA+TGG + chr7.1:4247207-4247226 MS.gene050805:CDS 50.0%
TATCGCAAGAAAACACGGCG+TGG + chr7.1:4246968-4246987 MS.gene050805:CDS 50.0%
TCTAACTGTCATCAGGGAGG+TGG + chr7.1:4246917-4246936 MS.gene050805:intron 50.0%
! GTGAAGTGTCTTAGCGATGC+AGG + chr7.1:4247749-4247768 MS.gene050805:CDS 50.0%
!! GTGGCCTTGTGCATTTAGCA+TGG - chr7.1:4248681-4248700 None:intergenic 50.0%
ACTGTCATCAGGGAGGTGGA+TGG + chr7.1:4246921-4246940 MS.gene050805:intron 55.0%
CAGCAGATCCCCATGGCTAT+TGG + chr7.1:4248638-4248657 MS.gene050805:CDS 55.0%
GCGAATTTGGGCAGCTGCAA+TGG + chr7.1:4247601-4247620 MS.gene050805:CDS 55.0%
TAGCCATGGGGATCTGCTGA+TGG - chr7.1:4248637-4248656 None:intergenic 55.0%
!! CAGTGGTGTTGTAGGGATGC+AGG + chr7.1:4247943-4247962 MS.gene050805:CDS 55.0%
AGGGTGAGTCCTACGAGCAG+AGG - chr7.1:4246568-4246587 None:intergenic 60.0%
CCATGGGGATCTGCTGATGG+AGG - chr7.1:4248634-4248653 None:intergenic 60.0%
CCTCCATCAGCAGATCCCCA+TGG + chr7.1:4248631-4248650 MS.gene050805:CDS 60.0%
CTTTCCGGATGTTCAGCGGG+TGG + chr7.1:4247668-4247687 MS.gene050805:CDS 60.0%
TAGGCCACCCGCTGAACATC+CGG - chr7.1:4247675-4247694 None:intergenic 60.0%
TCGCTCACTGCCAAACCGAG+AGG + chr7.1:4248908-4248927 MS.gene050805:CDS 60.0%
TATCTGGCGAGCGCACCCTC+CGG + chr7.1:4247912-4247931 MS.gene050805:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4246391 4248975 4246391 ID=MS.gene050805
chr7.1 mRNA 4246391 4248975 4246391 ID=MS.gene050805.t1;Parent=MS.gene050805
chr7.1 exon 4246391 4246616 4246391 ID=MS.gene050805.t1.exon1;Parent=MS.gene050805.t1
chr7.1 CDS 4246391 4246616 4246391 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4246692 4246774 4246692 ID=MS.gene050805.t1.exon2;Parent=MS.gene050805.t1
chr7.1 CDS 4246692 4246774 4246692 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4246932 4247061 4246932 ID=MS.gene050805.t1.exon3;Parent=MS.gene050805.t1
chr7.1 CDS 4246932 4247061 4246932 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4247166 4247239 4247166 ID=MS.gene050805.t1.exon4;Parent=MS.gene050805.t1
chr7.1 CDS 4247166 4247239 4247166 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4247575 4247786 4247575 ID=MS.gene050805.t1.exon5;Parent=MS.gene050805.t1
chr7.1 CDS 4247575 4247786 4247575 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4247904 4247964 4247904 ID=MS.gene050805.t1.exon6;Parent=MS.gene050805.t1
chr7.1 CDS 4247904 4247964 4247904 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4248093 4248146 4248093 ID=MS.gene050805.t1.exon7;Parent=MS.gene050805.t1
chr7.1 CDS 4248093 4248146 4248093 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4248294 4248371 4248294 ID=MS.gene050805.t1.exon8;Parent=MS.gene050805.t1
chr7.1 CDS 4248294 4248371 4248294 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4248613 4248718 4248613 ID=MS.gene050805.t1.exon9;Parent=MS.gene050805.t1
chr7.1 CDS 4248613 4248718 4248613 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
chr7.1 exon 4248830 4248975 4248830 ID=MS.gene050805.t1.exon10;Parent=MS.gene050805.t1
chr7.1 CDS 4248830 4248975 4248830 ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1
Gene Sequence

>MS.gene050805

ATGGCTAAACTTTTCTGGGTTTTCATTGCAATAGGACTTGTTATCACCAACTTGGTTTATGGGTTTGAATTAGGATATGGTCAACAACATGATCACTTCTTCAATGAAACTGAAGAACTCTTTCTGTTAGAGGCTCATGAACATGCAGCATCCTTTCTTGAGGGTAATGGAAATCCTCTGCTCGTAGGACTCACCCTTATCCACAATGCAGCTGCTAAAGGAGCAGGTACTACCTACAAACAAACAATACAACCTTTCTCCACCTTTCCTCTCAATATTAAATATTTTTGGTTTCTTGCAGTGTGCTTGGATGGAACATTACCTGGTTACCATTTGCATCGTGGATATGGATCAGGAGCAAACAGTTGGCTTGTTAATTTAGAGGTATTTCTTCTTATTTGGTTGATGAACTTTTCTTTTCTTTTCTTTTCTTTTGGTATTTCTTCAAAAGCATTTCTTGTAACATGCATATATGCCATGGCATAATTAACTGAAAATATTTAGAAATAATTAAAGTTTTAGGATTTCTAACTGTCATCAGGGAGGTGGATGGTGCAACAATGTCAGAACATGTGTTTATCGCAAGAAAACACGGCGTGGATCATCATTATACATGGAAAAGGAGATACCATTCACAGGAATACTTAGTAATAAACCTGAAGAAAATCCAGGTTTAATTTTCATTCAATTTATCTATTTATATTTCATTTTTGCTTTTTTAATTTGTTATAGGCAATAGCCTCTCATGTTATTGTTGCTCATATTTAATTTGCAGATTTTTTCAATTGGAATAGAGTAAAGCTTCGTTATTGTGATGGTGGCTCATTTACTGGAGATGGTGAAGATCAGGTACTATTAGATGTAAAAATTAATTACACTAGGTAACTGACTGACAAACTGGCGTAATTAATTAAATAGTGTAACTAACTTTTACATTTAATATGTAAAATTTGATATTTTGGGTTCTTCAAATGATACTTGTTTATACCGTAGACCTGTATCCTTTTTTGCATAAAAGTTAACTTTTGAGACTCAATTTTATAGCAGAAACTTGTAAGAGCAAGGTATAAAAGAGAAAAAATAACACCATTGTTGAGATACATGACTTGAACTTACTTGACATTCATTCATGTGATGAAATGAGTATTTACTACTTTATTTACGTATGTTGTCTGGTGAGACAGGAAGCAGAACTGCAATTCAGAGGACAGCGAATTTGGGCAGCTGCAATGGAAGATTTGATGTTAAAGGGAATGCATTTTGCTAATCAGGCTCTTCTTTCCGGATGTTCAGCGGGTGGCCTAGCTACTATTATACACTGTGATGAATTTCGAGGTCTCTTTCCAAGGACTACTAAAGTGAAGTGTCTTAGCGATGCAGGGTTGTTTCTTGATTCGTAAGCAACAAACAAACAAACTGCATTATTTCATGCTTCCAATGCCATTTCTACCATCATTACAAAAAAAATTAATCTTTAGTTAGTTGTTAATTTTTGTTTGCATTGAAATTATAGGATTGATATATCTGGCGAGCGCACCCTCCGGAATATGTACAGTGGTGTTGTAGGGATGCAGGTAACGCCACACTAATCACAAGAATACCAACTTATTACAAATAGTTTATATTCTTTCATGGCTATGTTATTTAACATGGTTGTAACATTTGTAAGGCATGCTGAGAATTATTTGTTTGATCACTGTAGGAAGCACAGAAGAATCTACCACAGATTTGTACTAATCACCTTGATCCTACCTCGGTAATCATAATCATTGATAATTGATTTCAGTTTTGTCAAATAGTTAGGAGTGTTAGTTTCATTTGAAAGAACAAAAAATTGATTTCTCTGCTAATACTTGCTTATAACTTGAACTTTCAGTGACCTGTTTTATTACTCCTTTTTCAGTGTTTCTTCCCTCAGAATTTGATTGCCAGTGTTAGAACACCACTTTTTCTTCTCAATACTGCTTATGATTCATGGCAGGTAAATATCCTAAGTTTGTCAATTGGTAGTCTTTAGTTTTTACTTGTGATAAATAAATAATAGTATATGAGATGTGGCAGTAACACAAACATTGGACACTATACTAACGGCTAACACATAGACACCGATAATGAAATGATTAAATGTATCGGTACGTGTCAGTGTCGTGTCAATGCTACATGGTAGTGATCATTACATTATTGTTTGTTCTAAACGATCGCATTTTCCTCCTTGTTATCAGATTCAGTCAAGTTTAGCTCCTCCATCAGCAGATCCCCATGGCTATTGGCATGAATGCAGATTAAACCATGCTAAATGCACAAGGCCACAAATCCAATTTCTGCAAGGTGATGTATAAGAATTAGTACCATTCATTGCAAGTGGAGAAAAATATTCAATAACTTATTATTACTATATTATTCAGTTGGTTAACACATTTCGCCGTCTCTTGAATACAGGGTTCAGGACTCATATGTTGAATTCTATTAAAGACTTCTCAAGATCAAACAAGAATGGATTGTTTATCAATTCGTGTTTCGCTCACTGCCAAACCGAGAGGCAAGATACATGGTTTTCAGACAATTCTCCGGTTATTAGGAACAAG

Protein sequence

>MS.gene050805.t1

MAKLFWVFIAIGLVITNLVYGFELGYGQQHDHFFNETEELFLLEAHEHAASFLEGNGNPLLVGLTLIHNAAAKGAVCLDGTLPGYHLHRGYGSGANSWLVNLEGGGWCNNVRTCVYRKKTRRGSSLYMEKEIPFTGILSNKPEENPDFFNWNRVKLRYCDGGSFTGDGEDQEAELQFRGQRIWAAAMEDLMLKGMHFANQALLSGCSAGGLATIIHCDEFRGLFPRTTKVKCLSDAGLFLDSIDISGERTLRNMYSGVVGMQEAQKNLPQICTNHLDPTSCFFPQNLIASVRTPLFLLNTAYDSWQIQSSLAPPSADPHGYWHECRLNHAKCTRPQIQFLQGFRTHMLNSIKDFSRSNKNGLFINSCFAHCQTERQDTWFSDNSPVIRNK