Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050805.t1 | XP_003626125.1 | 94.9 | 391 | 12 | 3 | 1 | 390 | 1 | 384 | 5.60E-221 | 776.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050805.t1 | Q9SFF6 | 67.8 | 382 | 117 | 2 | 9 | 390 | 5 | 380 | 3.6e-160 | 565.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050805.t1 | Q2HRU2 | 94.9 | 391 | 12 | 3 | 1 | 390 | 1 | 384 | 4.0e-221 | 776.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050805 | MS.gene050806 | 0.989114 | 9.48E-177 | -1.69E-46 |
MS.gene050805 | MS.gene051263 | 0.819956 | 8.84E-53 | -1.69E-46 |
MS.gene050805 | MS.gene072607 | 0.943525 | 1.03E-102 | -1.69E-46 |
MS.gene050805 | MS.gene23104 | 0.987486 | 1.97E-170 | -1.69E-46 |
MS.gene050805 | MS.gene90010 | 0.813923 | 2.00E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene071630 | MS.gene050805 | PPI |
MS.gene050825 | MS.gene050805 | PPI |
MS.gene34152 | MS.gene050805 | PPI |
MS.gene20926 | MS.gene050805 | PPI |
MS.gene005408 | MS.gene050805 | PPI |
MS.gene061169 | MS.gene050805 | PPI |
MS.gene006279 | MS.gene050805 | PPI |
MS.gene072631 | MS.gene050805 | PPI |
MS.gene21120 | MS.gene050805 | PPI |
MS.gene061170 | MS.gene050805 | PPI |
MS.gene34153 | MS.gene050805 | PPI |
MS.gene21119 | MS.gene050805 | PPI |
MS.gene49106 | MS.gene050805 | PPI |
MS.gene49105 | MS.gene050805 | PPI |
MS.gene07380 | MS.gene050805 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050805.t1 | MTR_7g111280 | 94.885 | 391 | 12 | 3 | 1 | 390 | 1 | 384 | 0.0 | 767 |
MS.gene050805.t1 | MTR_1g085070 | 71.355 | 391 | 87 | 5 | 1 | 390 | 1 | 367 | 0.0 | 563 |
MS.gene050805.t1 | MTR_7g110900 | 71.903 | 331 | 93 | 0 | 59 | 389 | 49 | 379 | 0.0 | 531 |
MS.gene050805.t1 | MTR_4g124320 | 64.962 | 391 | 118 | 2 | 3 | 390 | 12 | 386 | 0.0 | 531 |
MS.gene050805.t1 | MTR_7g110900 | 71.903 | 331 | 93 | 0 | 59 | 389 | 49 | 379 | 0.0 | 530 |
MS.gene050805.t1 | MTR_1g085620 | 68.182 | 352 | 110 | 1 | 41 | 390 | 17 | 368 | 0.0 | 521 |
MS.gene050805.t1 | MTR_4g124320 | 64.194 | 310 | 92 | 2 | 3 | 309 | 12 | 305 | 4.91e-145 | 415 |
MS.gene050805.t1 | MTR_1g085620 | 69.962 | 263 | 79 | 0 | 128 | 390 | 1 | 263 | 4.53e-143 | 409 |
MS.gene050805.t1 | MTR_8g072010 | 52.199 | 341 | 159 | 2 | 52 | 390 | 19 | 357 | 9.96e-134 | 389 |
MS.gene050805.t1 | MTR_8g072000 | 50.909 | 330 | 160 | 1 | 60 | 387 | 26 | 355 | 5.86e-127 | 371 |
MS.gene050805.t1 | MTR_8g072000 | 50.909 | 330 | 160 | 1 | 60 | 387 | 57 | 386 | 1.47e-126 | 371 |
MS.gene050805.t1 | MTR_1g101000 | 52.836 | 335 | 153 | 3 | 60 | 389 | 37 | 371 | 3.20e-126 | 369 |
MS.gene050805.t1 | MTR_1g101020 | 52.836 | 335 | 153 | 3 | 60 | 389 | 37 | 371 | 1.78e-125 | 368 |
MS.gene050805.t1 | MTR_1g101000 | 52.836 | 335 | 153 | 3 | 60 | 389 | 37 | 371 | 2.05e-125 | 368 |
MS.gene050805.t1 | MTR_1g101000 | 52.836 | 335 | 153 | 3 | 60 | 389 | 37 | 371 | 2.84e-125 | 368 |
MS.gene050805.t1 | MTR_5g042650 | 49.849 | 331 | 160 | 2 | 61 | 389 | 28 | 354 | 3.21e-121 | 357 |
MS.gene050805.t1 | MTR_7g060760 | 49.699 | 332 | 161 | 2 | 61 | 390 | 56 | 383 | 7.49e-120 | 354 |
MS.gene050805.t1 | MTR_1g036590 | 60.000 | 80 | 32 | 0 | 243 | 322 | 271 | 350 | 9.12e-25 | 105 |
MS.gene050805.t1 | MTR_7g006750 | 50.000 | 94 | 47 | 0 | 201 | 294 | 467 | 560 | 1.45e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050805.t1 | AT3G05910 | 67.624 | 383 | 118 | 2 | 8 | 390 | 4 | 380 | 0.0 | 559 |
MS.gene050805.t1 | AT5G26670 | 68.286 | 391 | 113 | 3 | 1 | 390 | 1 | 381 | 0.0 | 553 |
MS.gene050805.t1 | AT1G57590 | 73.333 | 330 | 88 | 0 | 61 | 390 | 79 | 408 | 0.0 | 533 |
MS.gene050805.t1 | AT3G62060 | 61.323 | 393 | 132 | 3 | 4 | 390 | 5 | 383 | 0.0 | 513 |
MS.gene050805.t1 | AT3G62060 | 61.323 | 393 | 132 | 3 | 4 | 390 | 5 | 383 | 0.0 | 512 |
MS.gene050805.t1 | AT2G46930 | 59.845 | 386 | 137 | 3 | 5 | 390 | 14 | 381 | 9.02e-177 | 498 |
MS.gene050805.t1 | AT1G09550 | 58.475 | 354 | 143 | 2 | 40 | 390 | 17 | 369 | 2.41e-155 | 443 |
MS.gene050805.t1 | AT3G05910 | 64.725 | 309 | 103 | 2 | 8 | 316 | 4 | 306 | 1.07e-149 | 426 |
MS.gene050805.t1 | AT5G26670 | 72.243 | 263 | 73 | 0 | 128 | 390 | 1 | 263 | 4.24e-146 | 416 |
MS.gene050805.t1 | AT5G26670 | 72.243 | 263 | 73 | 0 | 128 | 390 | 1 | 263 | 4.24e-146 | 416 |
MS.gene050805.t1 | AT5G26670 | 72.243 | 263 | 73 | 0 | 128 | 390 | 1 | 263 | 4.24e-146 | 416 |
MS.gene050805.t1 | AT4G19420 | 53.982 | 339 | 154 | 1 | 51 | 387 | 14 | 352 | 2.32e-137 | 398 |
MS.gene050805.t1 | AT4G19420 | 53.982 | 339 | 154 | 1 | 51 | 387 | 14 | 352 | 2.32e-137 | 398 |
MS.gene050805.t1 | AT4G19420 | 53.666 | 341 | 156 | 1 | 49 | 387 | 12 | 352 | 2.96e-137 | 399 |
MS.gene050805.t1 | AT5G23870 | 52.994 | 334 | 152 | 3 | 62 | 390 | 35 | 368 | 1.27e-132 | 386 |
MS.gene050805.t1 | AT5G23870 | 52.994 | 334 | 152 | 3 | 62 | 390 | 35 | 368 | 1.27e-132 | 386 |
MS.gene050805.t1 | AT5G23870 | 52.994 | 334 | 152 | 3 | 62 | 390 | 35 | 368 | 2.00e-132 | 387 |
MS.gene050805.t1 | AT5G23870 | 52.994 | 334 | 152 | 3 | 62 | 390 | 35 | 368 | 2.68e-132 | 387 |
MS.gene050805.t1 | AT5G45280 | 50.000 | 330 | 163 | 1 | 62 | 389 | 24 | 353 | 3.86e-126 | 369 |
MS.gene050805.t1 | AT3G09410 | 46.429 | 392 | 192 | 4 | 2 | 390 | 16 | 392 | 4.97e-126 | 369 |
MS.gene050805.t1 | AT3G09410 | 46.429 | 392 | 192 | 4 | 2 | 390 | 16 | 392 | 3.90e-125 | 368 |
MS.gene050805.t1 | AT4G19410 | 49.091 | 330 | 166 | 1 | 62 | 389 | 24 | 353 | 2.48e-123 | 362 |
MS.gene050805.t1 | AT4G19410 | 49.091 | 330 | 166 | 1 | 62 | 389 | 24 | 353 | 2.64e-122 | 363 |
MS.gene050805.t1 | AT3G09405 | 44.133 | 392 | 192 | 4 | 2 | 390 | 13 | 380 | 8.89e-119 | 351 |
MS.gene050805.t1 | AT5G45280 | 52.128 | 282 | 133 | 1 | 62 | 341 | 24 | 305 | 5.51e-110 | 327 |
MS.gene050805.t1 | AT4G19420 | 56.522 | 230 | 98 | 1 | 51 | 278 | 14 | 243 | 5.06e-91 | 276 |
MS.gene050805.t1 | AT3G09405 | 47.445 | 274 | 139 | 2 | 120 | 390 | 2 | 273 | 6.29e-91 | 276 |
Find 98 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTATCACCAACTTGGTTTA+TGG | 0.071657 | 7.1:+4246430 | MS.gene050805:CDS |
AATTCAGAGGACAGCGAATT+TGG | 0.187648 | 7.1:+4247588 | MS.gene050805:CDS |
GCTAATCAGGCTCTTCTTTC+CGG | 0.191020 | 7.1:+4247653 | MS.gene050805:CDS |
ATACATCACCTTGCAGAAAT+TGG | 0.207626 | 7.1:-4248705 | None:intergenic |
CAGACAATTCTCCGGTTATT+AGG | 0.224305 | 7.1:+4248947 | MS.gene050805:CDS |
AATGGAAGATTTGATGTTAA+AGG | 0.242008 | 7.1:+4247619 | MS.gene050805:CDS |
TGTGATGGTGGCTCATTTAC+TGG | 0.246928 | 7.1:+4247201 | MS.gene050805:CDS |
TACCATTTGCATCGTGGATA+TGG | 0.251407 | 7.1:+4246718 | MS.gene050805:CDS |
TTGGTTTATGGGTTTGAATT+AGG | 0.260228 | 7.1:+4246442 | MS.gene050805:CDS |
TATGGGTTTGAATTAGGATA+TGG | 0.270691 | 7.1:+4246448 | MS.gene050805:CDS |
TTATCACCAACTTGGTTTAT+GGG | 0.298292 | 7.1:+4246431 | MS.gene050805:CDS |
TCAATACTGCTTATGATTCA+TGG | 0.299224 | 7.1:+4248346 | MS.gene050805:CDS |
TGAAGAACTCTTTCTGTTAG+AGG | 0.300195 | 7.1:+4246501 | MS.gene050805:CDS |
CAGTTGGCTTGTTAATTTAG+AGG | 0.330535 | 7.1:+4246753 | MS.gene050805:CDS |
AATTATAGGATTGATATATC+TGG | 0.336116 | 7.1:+4247896 | MS.gene050805:intron |
TAGCAGCTGCATTGTGGATA+AGG | 0.344441 | 7.1:-4246585 | None:intergenic |
ATGGAAGATTTGATGTTAAA+GGG | 0.348581 | 7.1:+4247620 | MS.gene050805:CDS |
CACTTCACTTTAGTAGTCCT+TGG | 0.363666 | 7.1:-4247734 | None:intergenic |
CCTTGCAGAAATTGGATTTG+TGG | 0.382065 | 7.1:-4248697 | None:intergenic |
TTCACCTTGTTCCTAATAAC+CGG | 0.384001 | 7.1:-4248958 | None:intergenic |
CAGCAGATCCCCATGGCTAT+TGG | 0.396660 | 7.1:+4248638 | MS.gene050805:CDS |
CTTCTTTCCGGATGTTCAGC+GGG | 0.402249 | 7.1:+4247665 | MS.gene050805:CDS |
ATTCAGAGGACAGCGAATTT+GGG | 0.404061 | 7.1:+4247589 | MS.gene050805:CDS |
CAACACCACTGTACATATTC+CGG | 0.405411 | 7.1:-4247931 | None:intergenic |
TTACTAAGTATTCCTGTGAA+TGG | 0.407702 | 7.1:-4247019 | None:intergenic |
ATGTATCTTGCCTCTCGGTT+TGG | 0.417685 | 7.1:-4248918 | None:intergenic |
AGCAGCTGCATTGTGGATAA+GGG | 0.417871 | 7.1:-4246584 | None:intergenic |
GCATCCTTTCTTGAGGGTAA+TGG | 0.436523 | 7.1:+4246538 | MS.gene050805:CDS |
TTGGTTTCTTGCAGTGTGCT+TGG | 0.438110 | 7.1:+4246678 | MS.gene050805:intron |
AATATGTACAGTGGTGTTGT+AGG | 0.448233 | 7.1:+4247935 | MS.gene050805:CDS |
TAGGCCACCCGCTGAACATC+CGG | 0.448568 | 7.1:-4247672 | None:intergenic |
GCGAATTTGGGCAGCTGCAA+TGG | 0.455500 | 7.1:+4247601 | MS.gene050805:CDS |
TACTGGAGATGGTGAAGATC+AGG | 0.456973 | 7.1:+4247218 | MS.gene050805:CDS |
TTTCTTGCAGTGTGCTTGGA+TGG | 0.462046 | 7.1:+4246682 | MS.gene050805:intron |
GTCTCTTGAATACAGGGTTC+AGG | 0.466892 | 7.1:+4248815 | MS.gene050805:intron |
AATAAACCTGAAGAAAATCC+AGG | 0.477981 | 7.1:+4247040 | MS.gene050805:CDS |
ATCCACAATGCAGCTGCTAA+AGG | 0.480879 | 7.1:+4246589 | MS.gene050805:CDS |
GTGAAGTGTCTTAGCGATGC+AGG | 0.481043 | 7.1:+4247749 | MS.gene050805:CDS |
ATTTCCATTACCCTCAAGAA+AGG | 0.487996 | 7.1:-4246542 | None:intergenic |
TTCTCAAGATCAAACAAGAA+TGG | 0.489491 | 7.1:+4248865 | MS.gene050805:CDS |
TTGCATCGTGGATATGGATC+AGG | 0.495342 | 7.1:+4246724 | MS.gene050805:CDS |
AATTTCGAGGTCTCTTTCCA+AGG | 0.497114 | 7.1:+4247717 | MS.gene050805:CDS |
ATCATCATTATACATGGAAA+AGG | 0.501178 | 7.1:+4246991 | MS.gene050805:CDS |
CTCCTTTAGCAGCTGCATTG+TGG | 0.510189 | 7.1:-4246591 | None:intergenic |
TGCATTCATGCCAATAGCCA+TGG | 0.510756 | 7.1:-4248648 | None:intergenic |
ATCCATATCCACGATGCAAA+TGG | 0.517887 | 7.1:-4246720 | None:intergenic |
CATGCAGCATCCTTTCTTGA+GGG | 0.518276 | 7.1:+4246532 | MS.gene050805:CDS |
ATACACTGTGATGAATTTCG+AGG | 0.519543 | 7.1:+4247704 | MS.gene050805:CDS |
ACCCAGAAAAGTTTAGCCAT+TGG | 0.528435 | 7.1:-4246388 | None:intergenic |
TAGCCATGGGGATCTGCTGA+TGG | 0.530490 | 7.1:-4248634 | None:intergenic |
AGGACTTGTTATCACCAACT+TGG | 0.533797 | 7.1:+4246423 | MS.gene050805:CDS |
CCACGATGCAAATGGTAACC+AGG | 0.545374 | 7.1:-4246712 | None:intergenic |
GCATTCATGCCAATAGCCAT+GGG | 0.548266 | 7.1:-4248647 | None:intergenic |
TATCTGGCGAGCGCACCCTC+CGG | 0.549827 | 7.1:+4247912 | MS.gene050805:CDS |
GTAAAGCTTCGTTATTGTGA+TGG | 0.550885 | 7.1:+4247186 | MS.gene050805:CDS |
CAGTGGTGTTGTAGGGATGC+AGG | 0.553790 | 7.1:+4247943 | MS.gene050805:CDS |
TGCTTGGATGGAACATTACC+TGG | 0.558834 | 7.1:+4246694 | MS.gene050805:CDS |
TTCAAACCCATAAACCAAGT+TGG | 0.559248 | 7.1:-4246437 | None:intergenic |
AATGCAGCTGCTAAAGGAGC+AGG | 0.563358 | 7.1:+4246595 | MS.gene050805:CDS |
AAACCGAGAGGCAAGATACA+TGG | 0.565165 | 7.1:+4248920 | MS.gene050805:CDS |
GCGTGGATCATCATTATACA+TGG | 0.565339 | 7.1:+4246985 | MS.gene050805:CDS |
TACTGCTTATGATTCATGGC+AGG | 0.565480 | 7.1:+4248350 | MS.gene050805:CDS |
TCTTCTTTCCGGATGTTCAG+CGG | 0.565522 | 7.1:+4247664 | MS.gene050805:CDS |
GTGGCCTTGTGCATTTAGCA+TGG | 0.567737 | 7.1:-4248678 | None:intergenic |
GTGTTTATCGCAAGAAAACA+CGG | 0.570483 | 7.1:+4246963 | MS.gene050805:CDS |
ACATGCAGCATCCTTTCTTG+AGG | 0.576567 | 7.1:+4246531 | MS.gene050805:CDS |
CACAGTGTATAATAGTAGCT+AGG | 0.579094 | 7.1:-4247691 | None:intergenic |
GGTGGCTCATTTACTGGAGA+TGG | 0.581728 | 7.1:+4247207 | MS.gene050805:CDS |
TCTAACTGTCATCAGGGAGG+TGG | 0.582270 | 7.1:+4246917 | MS.gene050805:intron |
ACACTGGCAATCAAATTCTG+AGG | 0.583315 | 7.1:-4248303 | None:intergenic |
ATGATTATGATTACCGAGGT+AGG | 0.584023 | 7.1:-4248138 | None:intergenic |
ATGGATCAGGAGCAAACAGT+TGG | 0.589134 | 7.1:+4246737 | MS.gene050805:CDS |
CACTGGCAATCAAATTCTGA+GGG | 0.591267 | 7.1:-4248302 | None:intergenic |
CTTTCCGGATGTTCAGCGGG+TGG | 0.596559 | 7.1:+4247668 | MS.gene050805:CDS |
GAAAAGGAGATACCATTCAC+AGG | 0.596897 | 7.1:+4247007 | MS.gene050805:CDS |
AAACCATGTATCTTGCCTCT+CGG | 0.596928 | 7.1:-4248923 | None:intergenic |
AAGCTTCGTTATTGTGATGG+TGG | 0.600562 | 7.1:+4247189 | MS.gene050805:CDS |
TGAAGTGTCTTAGCGATGCA+GGG | 0.608865 | 7.1:+4247750 | MS.gene050805:CDS |
CCTGGTTACCATTTGCATCG+TGG | 0.609738 | 7.1:+4246712 | MS.gene050805:CDS |
TGATTACCGAGGTAGGATCA+AGG | 0.612410 | 7.1:-4248131 | None:intergenic |
ATATGTACAGTGGTGTTGTA+GGG | 0.613917 | 7.1:+4247936 | MS.gene050805:CDS |
CCATGGGGATCTGCTGATGG+AGG | 0.617825 | 7.1:-4248631 | None:intergenic |
ACTGTCATCAGGGAGGTGGA+TGG | 0.626588 | 7.1:+4246921 | MS.gene050805:intron |
AGGGTGAGTCCTACGAGCAG+AGG | 0.626989 | 7.1:-4246565 | None:intergenic |
TTCTCCGGTTATTAGGAACA+AGG | 0.636482 | 7.1:+4248954 | MS.gene050805:CDS |
CACCACTGTACATATTCCGG+AGG | 0.638914 | 7.1:-4247928 | None:intergenic |
AATGGAAATCCTCTGCTCGT+AGG | 0.640827 | 7.1:+4246556 | MS.gene050805:CDS |
CCTCCATCAGCAGATCCCCA+TGG | 0.647413 | 7.1:+4248631 | MS.gene050805:CDS |
CCACAAATCCAATTTCTGCA+AGG | 0.649408 | 7.1:+4248697 | MS.gene050805:CDS |
TAATCACCTTGATCCTACCT+CGG | 0.661838 | 7.1:+4248125 | MS.gene050805:CDS |
GAAGCAGAACTGCAATTCAG+AGG | 0.664323 | 7.1:+4247575 | MS.gene050805:CDS |
ACCACTGTACATATTCCGGA+GGG | 0.680732 | 7.1:-4247927 | None:intergenic |
TATCGCAAGAAAACACGGCG+TGG | 0.683797 | 7.1:+4246968 | MS.gene050805:CDS |
AGGTGATTAGTACAAATCTG+TGG | 0.684849 | 7.1:-4248111 | None:intergenic |
TCGCTCACTGCCAAACCGAG+AGG | 0.692246 | 7.1:+4248908 | MS.gene050805:CDS |
TAAACCATGCTAAATGCACA+AGG | 0.692567 | 7.1:+4248674 | MS.gene050805:CDS |
ACCCTCCGGAATATGTACAG+TGG | 0.725020 | 7.1:+4247926 | MS.gene050805:CDS |
CATTCATGCCAATAGCCATG+GGG | 0.744235 | 7.1:-4248646 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATGTAAAATTTGATATTT+TGG | + | chr7.1:4247330-4247349 | MS.gene050805:intron | 10.0% |
!!! | ATTAATTTTTTTTGTAATGA+TGG | - | chr7.1:4247843-4247862 | None:intergenic | 10.0% |
!!! | TATGTAAAATTTGATATTTT+GGG | + | chr7.1:4247331-4247350 | MS.gene050805:intron | 10.0% |
!!! | TTAGAAATAATTAAAGTTTT+AGG | + | chr7.1:4246891-4246910 | MS.gene050805:intron | 10.0% |
!! | AAATAGTTTATATTCTTTCA+TGG | + | chr7.1:4248003-4248022 | MS.gene050805:intron | 15.0% |
!! | AATGAAATGATTAAATGTAT+CGG | + | chr7.1:4248501-4248520 | MS.gene050805:intron | 15.0% |
!! | ACATTTAATCATTTCATTAT+CGG | - | chr7.1:4248499-4248518 | None:intergenic | 15.0% |
!! | ATAAACTATTTGTAATAAGT+TGG | - | chr7.1:4247994-4248013 | None:intergenic | 15.0% |
!! | ATGTAAAAATTAATTACACT+AGG | + | chr7.1:4247250-4247269 | MS.gene050805:intron | 15.0% |
!! | CAAAAATATTTAATATTGAG+AGG | - | chr7.1:4246661-4246680 | None:intergenic | 15.0% |
!! | TTATTACTATATTATTCAGT+TGG | + | chr7.1:4248777-4248796 | MS.gene050805:intron | 15.0% |
!!! | CTCTCAATATTAAATATTTT+TGG | + | chr7.1:4246659-4246678 | MS.gene050805:intron | 15.0% |
!!! | TTGCTTTTTTAATTTGTTAT+AGG | + | chr7.1:4247101-4247120 | MS.gene050805:intron | 15.0% |
!! | AAATAATAGTATATGAGATG+TGG | + | chr7.1:4248426-4248445 | MS.gene050805:intron | 20.0% |
!! | AATTATAGGATTGATATATC+TGG | + | chr7.1:4247896-4247915 | MS.gene050805:intron | 20.0% |
!! | AATTGAATGAAAATTAAACC+TGG | - | chr7.1:4247061-4247080 | None:intergenic | 20.0% |
!! | ATATTTAATATTGAGAGGAA+AGG | - | chr7.1:4246656-4246675 | None:intergenic | 20.0% |
!! | TTTGTTTGCATTGAAATTAT+AGG | + | chr7.1:4247882-4247901 | MS.gene050805:intron | 20.0% |
!!! | AATTTGCAGATTTTTTCAAT+TGG | + | chr7.1:4247157-4247176 | MS.gene050805:intron | 20.0% |
!!! | AGTTAACTTTTATGCAAAAA+AGG | - | chr7.1:4247395-4247414 | None:intergenic | 20.0% |
!!! | TCTTTTCTTTTCTTTTCTTT+TGG | + | chr7.1:4246805-4246824 | MS.gene050805:intron | 20.0% |
! | AATATCCTAAGTTTGTCAAT+TGG | + | chr7.1:4248375-4248394 | MS.gene050805:intron | 25.0% |
! | AATGGAAGATTTGATGTTAA+AGG | + | chr7.1:4247619-4247638 | MS.gene050805:CDS | 25.0% |
! | ATCATCATTATACATGGAAA+AGG | + | chr7.1:4246991-4247010 | MS.gene050805:CDS | 25.0% |
! | ATGGAAGATTTGATGTTAAA+GGG | + | chr7.1:4247620-4247639 | MS.gene050805:CDS | 25.0% |
! | ATTATTTGTTTGATCACTGT+AGG | + | chr7.1:4248071-4248090 | MS.gene050805:intron | 25.0% |
! | TGAAAAAGGAGTAATAAAAC+AGG | - | chr7.1:4248273-4248292 | None:intergenic | 25.0% |
!! | ATTTTCAGTTAATTATGCCA+TGG | - | chr7.1:4246869-4246888 | None:intergenic | 25.0% |
!! | TTTTATGCAAAAAAGGATAC+AGG | - | chr7.1:4247388-4247407 | None:intergenic | 25.0% |
!! | TTTTGTAATGATGGTAGAAA+TGG | - | chr7.1:4247834-4247853 | None:intergenic | 25.0% |
!!! | TAGAGGTATTTCTTCTTATT+TGG | + | chr7.1:4246770-4246789 | MS.gene050805:intron | 25.0% |
!!! | TTCAGTTTTGTCAAATAGTT+AGG | + | chr7.1:4248172-4248191 | MS.gene050805:intron | 25.0% |
AACATTGGACACTATACTAA+CGG | + | chr7.1:4248459-4248478 | MS.gene050805:intron | 30.0% | |
AATAAACCTGAAGAAAATCC+AGG | + | chr7.1:4247040-4247059 | MS.gene050805:CDS | 30.0% | |
ACATGGTTGTAACATTTGTA+AGG | + | chr7.1:4248038-4248057 | MS.gene050805:intron | 30.0% | |
AGGTTGTATTGTTTGTTTGT+AGG | - | chr7.1:4246626-4246645 | None:intergenic | 30.0% | |
ATCAATGATTATGATTACCG+AGG | - | chr7.1:4248145-4248164 | None:intergenic | 30.0% | |
TATGGGTTTGAATTAGGATA+TGG | + | chr7.1:4246448-4246467 | MS.gene050805:CDS | 30.0% | |
TCAATACTGCTTATGATTCA+TGG | + | chr7.1:4248346-4248365 | MS.gene050805:CDS | 30.0% | |
TTACTAAGTATTCCTGTGAA+TGG | - | chr7.1:4247022-4247041 | None:intergenic | 30.0% | |
TTATCACCAACTTGGTTTAT+GGG | + | chr7.1:4246431-4246450 | MS.gene050805:CDS | 30.0% | |
TTCTCAAGATCAAACAAGAA+TGG | + | chr7.1:4248865-4248884 | MS.gene050805:CDS | 30.0% | |
TTGGTTTATGGGTTTGAATT+AGG | + | chr7.1:4246442-4246461 | MS.gene050805:CDS | 30.0% | |
TTTAATATTGAGAGGAAAGG+TGG | - | chr7.1:4246653-4246672 | None:intergenic | 30.0% | |
! | ATTAAACCTGGATTTTCTTC+AGG | - | chr7.1:4247049-4247068 | None:intergenic | 30.0% |
! | CATGGCTATGTTATTTAACA+TGG | + | chr7.1:4248021-4248040 | MS.gene050805:intron | 30.0% |
! | CTTTATTTACGTATGTTGTC+TGG | + | chr7.1:4247544-4247563 | MS.gene050805:intron | 30.0% |
AAAAAGTGGTGTTCTAACAC+TGG | - | chr7.1:4248322-4248341 | None:intergenic | 35.0% | |
AATGATGGTAGAAATGGCAT+TGG | - | chr7.1:4247828-4247847 | None:intergenic | 35.0% | |
AGGATTTCTAACTGTCATCA+GGG | + | chr7.1:4246911-4246930 | MS.gene050805:intron | 35.0% | |
AGGTGATTAGTACAAATCTG+TGG | - | chr7.1:4248114-4248133 | None:intergenic | 35.0% | |
ATACACTGTGATGAATTTCG+AGG | + | chr7.1:4247704-4247723 | MS.gene050805:CDS | 35.0% | |
ATACATCACCTTGCAGAAAT+TGG | - | chr7.1:4248708-4248727 | None:intergenic | 35.0% | |
ATGAGCAACAATAACATGAG+AGG | - | chr7.1:4247133-4247152 | None:intergenic | 35.0% | |
ATGATTATGATTACCGAGGT+AGG | - | chr7.1:4248141-4248160 | None:intergenic | 35.0% | |
ATTTCCATTACCCTCAAGAA+AGG | - | chr7.1:4246545-4246564 | None:intergenic | 35.0% | |
CAAAAAAGGATACAGGTCTA+CGG | - | chr7.1:4247381-4247400 | None:intergenic | 35.0% | |
CAAGTCATGTATCTCAACAA+TGG | - | chr7.1:4247480-4247499 | None:intergenic | 35.0% | |
CACAGTGTATAATAGTAGCT+AGG | - | chr7.1:4247694-4247713 | None:intergenic | 35.0% | |
CTTGACTGAATCTGATAACA+AGG | - | chr7.1:4248604-4248623 | None:intergenic | 35.0% | |
GACTACCAATTGACAAACTT+AGG | - | chr7.1:4248383-4248402 | None:intergenic | 35.0% | |
GTAAAGCTTCGTTATTGTGA+TGG | + | chr7.1:4247186-4247205 | MS.gene050805:CDS | 35.0% | |
GTGTTTATCGCAAGAAAACA+CGG | + | chr7.1:4246963-4246982 | MS.gene050805:CDS | 35.0% | |
GTTATCACCAACTTGGTTTA+TGG | + | chr7.1:4246430-4246449 | MS.gene050805:CDS | 35.0% | |
TAAACCATGCTAAATGCACA+AGG | + | chr7.1:4248674-4248693 | MS.gene050805:CDS | 35.0% | |
TAGGATTTCTAACTGTCATC+AGG | + | chr7.1:4246910-4246929 | MS.gene050805:intron | 35.0% | |
TGAAGAACTCTTTCTGTTAG+AGG | + | chr7.1:4246501-4246520 | MS.gene050805:CDS | 35.0% | |
TGGTATTCTTGTGATTAGTG+TGG | - | chr7.1:4247974-4247993 | None:intergenic | 35.0% | |
TGTAACATGCATATATGCCA+TGG | + | chr7.1:4246849-4246868 | MS.gene050805:intron | 35.0% | |
TTAGTACCATTCATTGCAAG+TGG | + | chr7.1:4248733-4248752 | MS.gene050805:intron | 35.0% | |
TTCAAACCCATAAACCAAGT+TGG | - | chr7.1:4246440-4246459 | None:intergenic | 35.0% | |
! | ATGGTTTTCAGACAATTCTC+CGG | + | chr7.1:4248939-4248958 | MS.gene050805:CDS | 35.0% |
! | GCAGTATTGAGAAGAAAAAG+TGG | - | chr7.1:4248336-4248355 | None:intergenic | 35.0% |
! | TTCTGGGTTTTCATTGCAAT+AGG | + | chr7.1:4246403-4246422 | MS.gene050805:CDS | 35.0% |
! | TTTTCTCCACTTGCAATGAA+TGG | - | chr7.1:4248742-4248761 | None:intergenic | 35.0% |
!! | AATATGTACAGTGGTGTTGT+AGG | + | chr7.1:4247935-4247954 | MS.gene050805:CDS | 35.0% |
!! | ATATGTACAGTGGTGTTGTA+GGG | + | chr7.1:4247936-4247955 | MS.gene050805:CDS | 35.0% |
!! | CAGTTGGCTTGTTAATTTAG+AGG | + | chr7.1:4246753-4246772 | MS.gene050805:CDS | 35.0% |
AAACCATGTATCTTGCCTCT+CGG | - | chr7.1:4248926-4248945 | None:intergenic | 40.0% | |
AAGCTTCGTTATTGTGATGG+TGG | + | chr7.1:4247189-4247208 | MS.gene050805:CDS | 40.0% | |
AATTCAGAGGACAGCGAATT+TGG | + | chr7.1:4247588-4247607 | MS.gene050805:CDS | 40.0% | |
AATTTCGAGGTCTCTTTCCA+AGG | + | chr7.1:4247717-4247736 | MS.gene050805:CDS | 40.0% | |
ACACTGGCAATCAAATTCTG+AGG | - | chr7.1:4248306-4248325 | None:intergenic | 40.0% | |
AGCAGAAACTTGTAAGAGCA+AGG | + | chr7.1:4247433-4247452 | MS.gene050805:intron | 40.0% | |
ATCCATATCCACGATGCAAA+TGG | - | chr7.1:4246723-4246742 | None:intergenic | 40.0% | |
ATTCAGAGGACAGCGAATTT+GGG | + | chr7.1:4247589-4247608 | MS.gene050805:CDS | 40.0% | |
ATTTCTAACTGTCATCAGGG+AGG | + | chr7.1:4246914-4246933 | MS.gene050805:intron | 40.0% | |
CAACACCACTGTACATATTC+CGG | - | chr7.1:4247934-4247953 | None:intergenic | 40.0% | |
CACTGGCAATCAAATTCTGA+GGG | - | chr7.1:4248305-4248324 | None:intergenic | 40.0% | |
CACTTCACTTTAGTAGTCCT+TGG | - | chr7.1:4247737-4247756 | None:intergenic | 40.0% | |
CAGACAATTCTCCGGTTATT+AGG | + | chr7.1:4248947-4248966 | MS.gene050805:CDS | 40.0% | |
CCACAAATCCAATTTCTGCA+AGG | + | chr7.1:4248697-4248716 | MS.gene050805:CDS | 40.0% | |
CCTTGCAGAAATTGGATTTG+TGG | - | chr7.1:4248700-4248719 | None:intergenic | 40.0% | |
GAAAAGGAGATACCATTCAC+AGG | + | chr7.1:4247007-4247026 | MS.gene050805:CDS | 40.0% | |
GACTGAATCTGATAACAAGG+AGG | - | chr7.1:4248601-4248620 | None:intergenic | 40.0% | |
GAGGGAAGAAACACTGAAAA+AGG | - | chr7.1:4248287-4248306 | None:intergenic | 40.0% | |
GCGTGGATCATCATTATACA+TGG | + | chr7.1:4246985-4247004 | MS.gene050805:CDS | 40.0% | |
TAATCACCTTGATCCTACCT+CGG | + | chr7.1:4248125-4248144 | MS.gene050805:CDS | 40.0% | |
TACCATTTGCATCGTGGATA+TGG | + | chr7.1:4246718-4246737 | MS.gene050805:CDS | 40.0% | |
TACTGCTTATGATTCATGGC+AGG | + | chr7.1:4248350-4248369 | MS.gene050805:CDS | 40.0% | |
TAGGTAACTGACTGACAAAC+TGG | + | chr7.1:4247269-4247288 | MS.gene050805:intron | 40.0% | |
TGAACCCTGTATTCAAGAGA+CGG | - | chr7.1:4248816-4248835 | None:intergenic | 40.0% | |
TGTGGCAGTAACACAAACAT+TGG | + | chr7.1:4248444-4248463 | MS.gene050805:intron | 40.0% | |
! | GGGAATGCATTTTGCTAATC+AGG | + | chr7.1:4247640-4247659 | MS.gene050805:CDS | 40.0% |
!! | AGGACTTGTTATCACCAACT+TGG | + | chr7.1:4246423-4246442 | MS.gene050805:CDS | 40.0% |
AAACCGAGAGGCAAGATACA+TGG | + | chr7.1:4248920-4248939 | MS.gene050805:CDS | 45.0% | |
AATGGAAATCCTCTGCTCGT+AGG | + | chr7.1:4246556-4246575 | MS.gene050805:CDS | 45.0% | |
ACATGCAGCATCCTTTCTTG+AGG | + | chr7.1:4246531-4246550 | MS.gene050805:CDS | 45.0% | |
ACCACTGTACATATTCCGGA+GGG | - | chr7.1:4247930-4247949 | None:intergenic | 45.0% | |
AGCAGCTGCATTGTGGATAA+GGG | - | chr7.1:4246587-4246606 | None:intergenic | 45.0% | |
AGTGTCGTGTCAATGCTACA+TGG | + | chr7.1:4248532-4248551 | MS.gene050805:intron | 45.0% | |
ATCCACAATGCAGCTGCTAA+AGG | + | chr7.1:4246589-4246608 | MS.gene050805:CDS | 45.0% | |
ATGGATCAGGAGCAAACAGT+TGG | + | chr7.1:4246737-4246756 | MS.gene050805:CDS | 45.0% | |
ATGTATCTTGCCTCTCGGTT+TGG | - | chr7.1:4248921-4248940 | None:intergenic | 45.0% | |
CATGCAGCATCCTTTCTTGA+GGG | + | chr7.1:4246532-4246551 | MS.gene050805:CDS | 45.0% | |
CATTCATGCCAATAGCCATG+GGG | - | chr7.1:4248649-4248668 | None:intergenic | 45.0% | |
GAAGCAGAACTGCAATTCAG+AGG | + | chr7.1:4247575-4247594 | MS.gene050805:CDS | 45.0% | |
GCATCCTTTCTTGAGGGTAA+TGG | + | chr7.1:4246538-4246557 | MS.gene050805:CDS | 45.0% | |
GCATTCATGCCAATAGCCAT+GGG | - | chr7.1:4248650-4248669 | None:intergenic | 45.0% | |
GCTAATCAGGCTCTTCTTTC+CGG | + | chr7.1:4247653-4247672 | MS.gene050805:CDS | 45.0% | |
GTCTCTTGAATACAGGGTTC+AGG | + | chr7.1:4248815-4248834 | MS.gene050805:intron | 45.0% | |
TACTGGAGATGGTGAAGATC+AGG | + | chr7.1:4247218-4247237 | MS.gene050805:CDS | 45.0% | |
TAGCAGCTGCATTGTGGATA+AGG | - | chr7.1:4246588-4246607 | None:intergenic | 45.0% | |
TCTTCTTTCCGGATGTTCAG+CGG | + | chr7.1:4247664-4247683 | MS.gene050805:CDS | 45.0% | |
TGATTACCGAGGTAGGATCA+AGG | - | chr7.1:4248134-4248153 | None:intergenic | 45.0% | |
TGCATTCATGCCAATAGCCA+TGG | - | chr7.1:4248651-4248670 | None:intergenic | 45.0% | |
TGCTTGGATGGAACATTACC+TGG | + | chr7.1:4246694-4246713 | MS.gene050805:CDS | 45.0% | |
TTCGCCGTCTCTTGAATACA+GGG | + | chr7.1:4248809-4248828 | MS.gene050805:intron | 45.0% | |
TTGAGAGGAAAGGTGGAGAA+AGG | - | chr7.1:4246646-4246665 | None:intergenic | 45.0% | |
TTGCATCGTGGATATGGATC+AGG | + | chr7.1:4246724-4246743 | MS.gene050805:CDS | 45.0% | |
TTGGTTTCTTGCAGTGTGCT+TGG | + | chr7.1:4246678-4246697 | MS.gene050805:intron | 45.0% | |
TTTCGCCGTCTCTTGAATAC+AGG | + | chr7.1:4248808-4248827 | MS.gene050805:intron | 45.0% | |
TTTCTTGCAGTGTGCTTGGA+TGG | + | chr7.1:4246682-4246701 | MS.gene050805:intron | 45.0% | |
! | TGAAGTGTCTTAGCGATGCA+GGG | + | chr7.1:4247750-4247769 | MS.gene050805:CDS | 45.0% |
!! | TGTGATGGTGGCTCATTTAC+TGG | + | chr7.1:4247201-4247220 | MS.gene050805:CDS | 45.0% |
AATGCAGCTGCTAAAGGAGC+AGG | + | chr7.1:4246595-4246614 | MS.gene050805:CDS | 50.0% | |
ACCCTCCGGAATATGTACAG+TGG | + | chr7.1:4247926-4247945 | MS.gene050805:CDS | 50.0% | |
CACCACTGTACATATTCCGG+AGG | - | chr7.1:4247931-4247950 | None:intergenic | 50.0% | |
CCACGATGCAAATGGTAACC+AGG | - | chr7.1:4246715-4246734 | None:intergenic | 50.0% | |
CCTGGTTACCATTTGCATCG+TGG | + | chr7.1:4246712-4246731 | MS.gene050805:CDS | 50.0% | |
CGTATGTTGTCTGGTGAGAC+AGG | + | chr7.1:4247553-4247572 | MS.gene050805:intron | 50.0% | |
CTCCTTTAGCAGCTGCATTG+TGG | - | chr7.1:4246594-4246613 | None:intergenic | 50.0% | |
CTTCTTTCCGGATGTTCAGC+GGG | + | chr7.1:4247665-4247684 | MS.gene050805:CDS | 50.0% | |
GGTGGCTCATTTACTGGAGA+TGG | + | chr7.1:4247207-4247226 | MS.gene050805:CDS | 50.0% | |
TATCGCAAGAAAACACGGCG+TGG | + | chr7.1:4246968-4246987 | MS.gene050805:CDS | 50.0% | |
TCTAACTGTCATCAGGGAGG+TGG | + | chr7.1:4246917-4246936 | MS.gene050805:intron | 50.0% | |
! | GTGAAGTGTCTTAGCGATGC+AGG | + | chr7.1:4247749-4247768 | MS.gene050805:CDS | 50.0% |
!! | GTGGCCTTGTGCATTTAGCA+TGG | - | chr7.1:4248681-4248700 | None:intergenic | 50.0% |
ACTGTCATCAGGGAGGTGGA+TGG | + | chr7.1:4246921-4246940 | MS.gene050805:intron | 55.0% | |
CAGCAGATCCCCATGGCTAT+TGG | + | chr7.1:4248638-4248657 | MS.gene050805:CDS | 55.0% | |
GCGAATTTGGGCAGCTGCAA+TGG | + | chr7.1:4247601-4247620 | MS.gene050805:CDS | 55.0% | |
TAGCCATGGGGATCTGCTGA+TGG | - | chr7.1:4248637-4248656 | None:intergenic | 55.0% | |
!! | CAGTGGTGTTGTAGGGATGC+AGG | + | chr7.1:4247943-4247962 | MS.gene050805:CDS | 55.0% |
AGGGTGAGTCCTACGAGCAG+AGG | - | chr7.1:4246568-4246587 | None:intergenic | 60.0% | |
CCATGGGGATCTGCTGATGG+AGG | - | chr7.1:4248634-4248653 | None:intergenic | 60.0% | |
CCTCCATCAGCAGATCCCCA+TGG | + | chr7.1:4248631-4248650 | MS.gene050805:CDS | 60.0% | |
CTTTCCGGATGTTCAGCGGG+TGG | + | chr7.1:4247668-4247687 | MS.gene050805:CDS | 60.0% | |
TAGGCCACCCGCTGAACATC+CGG | - | chr7.1:4247675-4247694 | None:intergenic | 60.0% | |
TCGCTCACTGCCAAACCGAG+AGG | + | chr7.1:4248908-4248927 | MS.gene050805:CDS | 60.0% | |
TATCTGGCGAGCGCACCCTC+CGG | + | chr7.1:4247912-4247931 | MS.gene050805:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 4246391 | 4248975 | 4246391 | ID=MS.gene050805 |
chr7.1 | mRNA | 4246391 | 4248975 | 4246391 | ID=MS.gene050805.t1;Parent=MS.gene050805 |
chr7.1 | exon | 4246391 | 4246616 | 4246391 | ID=MS.gene050805.t1.exon1;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4246391 | 4246616 | 4246391 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4246692 | 4246774 | 4246692 | ID=MS.gene050805.t1.exon2;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4246692 | 4246774 | 4246692 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4246932 | 4247061 | 4246932 | ID=MS.gene050805.t1.exon3;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4246932 | 4247061 | 4246932 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4247166 | 4247239 | 4247166 | ID=MS.gene050805.t1.exon4;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4247166 | 4247239 | 4247166 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4247575 | 4247786 | 4247575 | ID=MS.gene050805.t1.exon5;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4247575 | 4247786 | 4247575 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4247904 | 4247964 | 4247904 | ID=MS.gene050805.t1.exon6;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4247904 | 4247964 | 4247904 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4248093 | 4248146 | 4248093 | ID=MS.gene050805.t1.exon7;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4248093 | 4248146 | 4248093 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4248294 | 4248371 | 4248294 | ID=MS.gene050805.t1.exon8;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4248294 | 4248371 | 4248294 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4248613 | 4248718 | 4248613 | ID=MS.gene050805.t1.exon9;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4248613 | 4248718 | 4248613 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
chr7.1 | exon | 4248830 | 4248975 | 4248830 | ID=MS.gene050805.t1.exon10;Parent=MS.gene050805.t1 |
chr7.1 | CDS | 4248830 | 4248975 | 4248830 | ID=cds.MS.gene050805.t1;Parent=MS.gene050805.t1 |
Gene Sequence |
Protein sequence |