Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072918.t1 | XP_003603428.2 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.40E-94 | 355.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072918.t1 | O13801 | 29.8 | 161 | 87 | 5 | 3 | 163 | 343 | 477 | 2.4e-07 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072918.t1 | G7JB51 | 97.1 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 9.8e-95 | 355.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049660 | MS.gene072918 | 0.807873 | 4.09E-50 | -1.69E-46 |
| MS.gene049989 | MS.gene072918 | 0.801142 | 1.04E-48 | -1.69E-46 |
| MS.gene05054 | MS.gene072918 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene072918 | 0.825599 | 4.29E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene072918 | 0.831762 | 1.39E-55 | -1.69E-46 |
| MS.gene056042 | MS.gene072918 | 0.811891 | 5.58E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene072918 | 0.818167 | 2.26E-52 | -1.69E-46 |
| MS.gene060565 | MS.gene072918 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene060825 | MS.gene072918 | 0.804584 | 2.01E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene61472 | MS.gene072918 | PPI |
| MS.gene64407 | MS.gene072918 | PPI |
| MS.gene59076 | MS.gene072918 | PPI |
| MS.gene038852 | MS.gene072918 | PPI |
| MS.gene83340 | MS.gene072918 | PPI |
| MS.gene072918 | MS.gene62452 | PPI |
| MS.gene036823 | MS.gene072918 | PPI |
| MS.gene067346 | MS.gene072918 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072918.t1 | MTR_3g107610 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.76e-108 | 306 |
| MS.gene072918.t1 | MTR_3g107610 | 90.789 | 152 | 12 | 2 | 1 | 152 | 1 | 150 | 2.53e-85 | 248 |
| MS.gene072918.t1 | MTR_4g011190 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 2.09e-55 | 172 |
| MS.gene072918.t1 | MTR_4g113840 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 4.59e-33 | 114 |
| MS.gene072918.t1 | MTR_2g054750 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 8.07e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072918.t1 | AT3G15680 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.32e-61 | 187 |
| MS.gene072918.t1 | AT3G15680 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.32e-61 | 187 |
| MS.gene072918.t1 | AT5G25490 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.37e-55 | 173 |
| MS.gene072918.t1 | AT5G25490 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.37e-55 | 173 |
| MS.gene072918.t1 | AT2G26695 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 1.99e-32 | 113 |
| MS.gene072918.t1 | AT2G26695 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 1.99e-32 | 113 |
| MS.gene072918.t1 | AT2G17975 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.56e-16 | 73.9 |
Find 71 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3.4:-93460477 | MS.gene072918:CDS |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3.4:-93460255 | MS.gene072918:CDS |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3.4:-93460501 | MS.gene072918:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3.4:+93459780 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3.4:+93459840 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3.4:-93460453 | MS.gene072918:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3.4:+93460306 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3.4:-93460204 | MS.gene072918:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3.4:-93460212 | MS.gene072918:CDS |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3.4:+93460420 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3.4:+93460399 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3.4:-93460398 | MS.gene072918:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3.4:-93460581 | MS.gene072918:CDS |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3.4:+93460570 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3.4:+93460541 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3.4:+93460329 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3.4:-93460234 | MS.gene072918:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3.4:+93460338 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3.4:-93460333 | MS.gene072918:CDS |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3.4:-93460322 | MS.gene072918:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3.4:+93460198 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3.4:-93460197 | MS.gene072918:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3.4:+93460449 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3.4:-93459851 | MS.gene072918:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3.4:+93459808 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3.4:+93460538 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3.4:-93460459 | MS.gene072918:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3.4:-93460588 | None:intergenic |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3.4:+93460334 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3.4:+93460421 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3.4:+93460307 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3.4:-93460572 | MS.gene072918:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3.4:-93459825 | MS.gene072918:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3.4:+93460206 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3.4:-93460492 | MS.gene072918:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3.4:+93460221 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3.4:+93460290 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3.4:+93460197 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3.4:+93460511 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3.4:-93460405 | MS.gene072918:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3.4:-93459811 | MS.gene072918:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3.4:-93460237 | MS.gene072918:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3.4:-93460521 | MS.gene072918:CDS |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3.4:-93460384 | MS.gene072918:CDS |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3.4:+93460414 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3.4:+93459821 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3.4:+93460209 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3.4:-93460185 | MS.gene072918:intron |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3.4:+93460246 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3.4:+93460404 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3.4:+93460467 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3.4:-93459824 | MS.gene072918:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3.4:-93460216 | MS.gene072918:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3.4:+93460185 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3.4:-93460522 | MS.gene072918:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3.4:-93460520 | MS.gene072918:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3.4:+93460275 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3.4:+93460284 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3.4:+93460407 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3.4:-93460495 | MS.gene072918:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3.4:-93459832 | MS.gene072918:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3.4:-93460375 | MS.gene072918:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3.4:-93460261 | MS.gene072918:CDS |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3.4:+93460400 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3.4:+93460422 | None:intergenic |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3.4:+93460387 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3.4:-93460498 | MS.gene072918:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3.4:+93460391 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3.4:+93460264 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3.4:+93460308 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3.4:+93460199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3.4:93460251-93460270 | None:intergenic | 15.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3.4:93460347-93460366 | MS.gene072918:CDS | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3.4:93460318-93460337 | MS.gene072918:CDS | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3.4:93460447-93460466 | None:intergenic | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3.4:93460349-93460368 | None:intergenic | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3.4:93460322-93460341 | MS.gene072918:CDS | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3.4:93460448-93460467 | None:intergenic | 25.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3.4:93460292-93460311 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3.4:93459833-93459852 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3.4:93460064-93460083 | None:intergenic | 30.0% |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3.4:93460485-93460504 | MS.gene072918:CDS | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3.4:93460107-93460126 | MS.gene072918:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3.4:93460204-93460223 | None:intergenic | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3.4:93460486-93460505 | MS.gene072918:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3.4:93460485-93460504 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3.4:93460480-93460499 | MS.gene072918:CDS | 35.0% | |
| TATGGTGATCTCAATAATCG+TGG | + | chr3.4:93460107-93460126 | None:intergenic | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3.4:93459993-93460012 | MS.gene072918:intron | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3.4:93460063-93460082 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3.4:93460065-93460084 | None:intergenic | 35.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3.4:93459904-93459923 | None:intergenic | 40.0% | |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3.4:93460237-93460256 | None:intergenic | 40.0% | |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3.4:93460472-93460491 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3.4:93460517-93460536 | MS.gene072918:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3.4:93460531-93460550 | None:intergenic | 40.0% | |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3.4:93459830-93459849 | None:intergenic | 40.0% |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3.4:93460235-93460254 | MS.gene072918:CDS | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3.4:93459870-93459889 | MS.gene072918:intron | 40.0% |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3.4:93460113-93460132 | MS.gene072918:intron | 40.0% |
| ACAGTACAATACCAGTCACC+AGG | + | chr3.4:93459984-93460003 | None:intergenic | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3.4:93459848-93459867 | MS.gene072918:CDS | 45.0% | |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3.4:93459846-93459865 | MS.gene072918:CDS | 45.0% | |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3.4:93460536-93460555 | MS.gene072918:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3.4:93460096-93460115 | None:intergenic | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3.4:93460563-93460582 | None:intergenic | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3.4:93459847-93459866 | MS.gene072918:CDS | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3.4:93459867-93459886 | MS.gene072918:CDS | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3.4:93459984-93460003 | MS.gene072918:intron | 45.0% | |
| TACAATACCAGTCACCAGGA+CGG | + | chr3.4:93459980-93459999 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3.4:93460116-93460135 | MS.gene072918:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3.4:93459906-93459925 | MS.gene072918:intron | 45.0% |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3.4:93459873-93459892 | MS.gene072918:intron | 45.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3.4:93459922-93459941 | None:intergenic | 50.0% | |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3.4:93460550-93460569 | None:intergenic | 50.0% | |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3.4:93460046-93460065 | MS.gene072918:intron | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3.4:93460557-93460576 | MS.gene072918:CDS | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3.4:93459860-93459879 | None:intergenic | 50.0% | |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3.4:93460037-93460056 | None:intergenic | 50.0% |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3.4:93459945-93459964 | MS.gene072918:intron | 50.0% |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3.4:93459909-93459928 | MS.gene072918:intron | 50.0% |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3.4:93460119-93460138 | MS.gene072918:intron | 50.0% |
| AGTCACCAGGACGGACATCA+GGG | + | chr3.4:93459971-93459990 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3.4:93460186-93460205 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3.4:93460035-93460054 | MS.gene072918:intron | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3.4:93460544-93460563 | MS.gene072918:CDS | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3.4:93460125-93460144 | None:intergenic | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3.4:93459796-93459815 | MS.gene072918:CDS | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3.4:93459949-93459968 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3.4:93459950-93459969 | None:intergenic | 55.0% | |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3.4:93459915-93459934 | MS.gene072918:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3.4:93459801-93459820 | None:intergenic | 55.0% | |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3.4:93460081-93460100 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3.4:93460087-93460106 | None:intergenic | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3.4:93460042-93460061 | None:intergenic | 55.0% |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3.4:93459876-93459895 | MS.gene072918:intron | 55.0% |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3.4:93459957-93459976 | None:intergenic | 60.0% | |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3.4:93460172-93460191 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3.4:93459972-93459991 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3.4:93460173-93460192 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3.4:93460174-93460193 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3.4:93460183-93460202 | MS.gene072918:intron | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3.4:93459970-93459989 | MS.gene072918:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3.4:93460543-93460562 | MS.gene072918:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3.4:93459951-93459970 | None:intergenic | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3.4:93460033-93460052 | None:intergenic | 60.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3.4:93459967-93459986 | None:intergenic | 65.0% | |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3.4:93460164-93460183 | MS.gene072918:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3.4:93460171-93460190 | MS.gene072918:intron | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3.4:93459894-93459913 | MS.gene072918:intron | 65.0% |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3.4:93460128-93460147 | MS.gene072918:intron | 65.0% |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3.4:93459963-93459982 | MS.gene072918:intron | 70.0% | |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3.4:93459964-93459983 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3.4:93460165-93460184 | None:intergenic | 70.0% | |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3.4:93460162-93460181 | None:intergenic | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3.4:93460131-93460150 | MS.gene072918:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3.4:93460150-93460169 | None:intergenic | 70.0% |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3.4:93459891-93459910 | MS.gene072918:intron | 70.0% |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3.4:93460152-93460171 | MS.gene072918:intron | 75.0% | |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3.4:93460156-93460175 | MS.gene072918:intron | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3.4:93460134-93460153 | MS.gene072918:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93459789 | 93460601 | 93459789 | ID=MS.gene072918 |
| chr3.4 | mRNA | 93459789 | 93460601 | 93459789 | ID=MS.gene072918.t1;Parent=MS.gene072918 |
| chr3.4 | exon | 93460186 | 93460601 | 93460186 | ID=MS.gene072918.t1.exon1;Parent=MS.gene072918.t1 |
| chr3.4 | CDS | 93460186 | 93460601 | 93460186 | ID=cds.MS.gene072918.t1;Parent=MS.gene072918.t1 |
| chr3.4 | exon | 93459789 | 93459888 | 93459789 | ID=MS.gene072918.t1.exon2;Parent=MS.gene072918.t1 |
| chr3.4 | CDS | 93459789 | 93459888 | 93459789 | ID=cds.MS.gene072918.t1;Parent=MS.gene072918.t1 |
| Gene Sequence |
| Protein sequence |
