Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073063.t1 | XP_003603595.1 | 88.5 | 599 | 39 | 7 | 1 | 571 | 1 | 597 | 9.00E-236 | 826.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073063.t1 | Q93YU8 | 31.2 | 685 | 355 | 16 | 1 | 570 | 1 | 684 | 7.0e-27 | 123.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073063.t1 | G7J2X7 | 88.5 | 599 | 39 | 7 | 1 | 571 | 1 | 597 | 6.5e-236 | 826.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051914 | MS.gene073063 | 0.820743 | 5.84E-53 | -1.69E-46 |
| MS.gene052169 | MS.gene073063 | 0.817872 | 2.63E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene073063 | 0.829493 | 4.99E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene073063 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene054633 | MS.gene073063 | 0.820204 | 7.76E-53 | -1.69E-46 |
| MS.gene054662 | MS.gene073063 | 0.851196 | 1.04E-60 | -1.69E-46 |
| MS.gene055308 | MS.gene073063 | 0.809331 | 1.99E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene073063 | 0.82778 | 1.29E-54 | -1.69E-46 |
| MS.gene05652 | MS.gene073063 | 0.80884 | 2.54E-50 | -1.69E-46 |
| MS.gene057367 | MS.gene073063 | 0.830252 | 3.26E-55 | -1.69E-46 |
| MS.gene057669 | MS.gene073063 | 0.819542 | 1.10E-52 | -1.69E-46 |
| MS.gene058128 | MS.gene073063 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene073063 | 0.813724 | 2.21E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene073063 | 0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene060291 | MS.gene073063 | 0.806362 | 8.53E-50 | -1.69E-46 |
| MS.gene06093 | MS.gene073063 | 0.866501 | 2.72E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073063.t1 | MTR_3g109450 | 89.816 | 599 | 31 | 7 | 1 | 571 | 1 | 597 | 0.0 | 855 |
| MS.gene073063.t1 | MTR_2g102050 | 52.558 | 430 | 153 | 8 | 167 | 553 | 204 | 625 | 1.65e-126 | 389 |
| MS.gene073063.t1 | MTR_4g012430 | 56.026 | 307 | 116 | 6 | 265 | 553 | 117 | 422 | 6.32e-104 | 323 |
| MS.gene073063.t1 | MTR_4g012430 | 64.407 | 59 | 21 | 0 | 1 | 59 | 1 | 59 | 1.30e-13 | 73.9 |
| MS.gene073063.t1 | MTR_3g078830 | 25.268 | 653 | 343 | 24 | 1 | 529 | 1 | 632 | 7.52e-36 | 143 |
| MS.gene073063.t1 | MTR_4g127620 | 25.123 | 609 | 344 | 19 | 1 | 510 | 1 | 596 | 1.69e-34 | 139 |
| MS.gene073063.t1 | MTR_8g006850 | 30.696 | 316 | 176 | 10 | 273 | 553 | 279 | 586 | 2.40e-33 | 135 |
| MS.gene073063.t1 | MTR_8g006850 | 55.932 | 59 | 26 | 0 | 1 | 59 | 1 | 59 | 2.14e-14 | 76.6 |
| MS.gene073063.t1 | MTR_8g091250 | 26.030 | 607 | 313 | 24 | 1 | 518 | 1 | 560 | 2.17e-31 | 129 |
| MS.gene073063.t1 | MTR_7g081705 | 30.225 | 311 | 183 | 8 | 267 | 550 | 401 | 704 | 6.84e-30 | 125 |
| MS.gene073063.t1 | MTR_7g081705 | 57.627 | 59 | 25 | 0 | 1 | 59 | 1 | 59 | 1.32e-14 | 77.8 |
| MS.gene073063.t1 | MTR_1g112850 | 28.529 | 333 | 176 | 11 | 211 | 510 | 236 | 539 | 1.53e-27 | 118 |
| MS.gene073063.t1 | MTR_5g022530 | 26.879 | 346 | 200 | 9 | 247 | 553 | 181 | 512 | 2.00e-27 | 117 |
| MS.gene073063.t1 | MTR_2g048360 | 29.553 | 291 | 174 | 8 | 251 | 513 | 179 | 466 | 2.14e-23 | 105 |
| MS.gene073063.t1 | MTR_5g087740 | 27.070 | 314 | 165 | 10 | 271 | 527 | 308 | 614 | 4.27e-23 | 104 |
| MS.gene073063.t1 | MTR_2g036920 | 27.957 | 279 | 156 | 8 | 271 | 510 | 503 | 775 | 2.96e-22 | 102 |
| MS.gene073063.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 7.62e-13 | 72.0 |
| MS.gene073063.t1 | MTR_2g036920 | 27.957 | 279 | 156 | 8 | 271 | 510 | 474 | 746 | 3.57e-22 | 101 |
| MS.gene073063.t1 | MTR_2g036920 | 44.048 | 84 | 40 | 3 | 1 | 78 | 1 | 83 | 7.07e-13 | 72.0 |
| MS.gene073063.t1 | MTR_5g098980 | 27.801 | 241 | 157 | 5 | 284 | 510 | 367 | 604 | 1.09e-21 | 100 |
| MS.gene073063.t1 | MTR_3g115120 | 26.538 | 260 | 162 | 7 | 270 | 510 | 280 | 529 | 7.29e-18 | 87.8 |
| MS.gene073063.t1 | MTR_3g088190 | 25.091 | 275 | 164 | 7 | 273 | 514 | 456 | 721 | 6.61e-17 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073063.t1 | AT5G25590 | 52.214 | 655 | 225 | 18 | 1 | 571 | 1 | 651 | 5.37e-176 | 517 |
| MS.gene073063.t1 | AT1G52320 | 61.562 | 320 | 98 | 6 | 258 | 553 | 10 | 328 | 1.00e-123 | 372 |
| MS.gene073063.t1 | AT1G52320 | 61.562 | 320 | 98 | 6 | 258 | 553 | 10 | 328 | 1.00e-123 | 372 |
| MS.gene073063.t1 | AT1G52320 | 61.442 | 319 | 100 | 4 | 258 | 553 | 336 | 654 | 1.78e-120 | 374 |
| MS.gene073063.t1 | AT1G52320 | 61.442 | 319 | 100 | 4 | 258 | 553 | 336 | 654 | 1.78e-120 | 374 |
| MS.gene073063.t1 | AT1G52320 | 61.442 | 319 | 100 | 4 | 258 | 553 | 313 | 631 | 2.45e-120 | 374 |
| MS.gene073063.t1 | AT2G27090 | 25.198 | 631 | 361 | 21 | 1 | 534 | 1 | 617 | 8.64e-38 | 149 |
| MS.gene073063.t1 | AT2G27090 | 25.198 | 631 | 361 | 21 | 1 | 534 | 1 | 617 | 8.64e-38 | 149 |
| MS.gene073063.t1 | AT1G02110 | 29.747 | 316 | 185 | 7 | 267 | 553 | 266 | 573 | 8.11e-34 | 137 |
| MS.gene073063.t1 | AT1G02110 | 52.542 | 59 | 28 | 0 | 1 | 59 | 1 | 59 | 4.05e-13 | 72.8 |
| MS.gene073063.t1 | AT4G39790 | 25.970 | 593 | 325 | 20 | 1 | 524 | 9 | 556 | 2.01e-33 | 135 |
| MS.gene073063.t1 | AT3G51290 | 28.869 | 336 | 195 | 9 | 273 | 570 | 202 | 531 | 3.07e-30 | 126 |
| MS.gene073063.t1 | AT4G30130 | 25.321 | 624 | 349 | 22 | 1 | 532 | 1 | 599 | 4.02e-30 | 125 |
| MS.gene073063.t1 | AT4G30130 | 25.321 | 624 | 349 | 22 | 1 | 532 | 1 | 599 | 4.02e-30 | 125 |
| MS.gene073063.t1 | AT3G51290 | 28.869 | 336 | 195 | 9 | 273 | 570 | 202 | 531 | 5.17e-30 | 125 |
| MS.gene073063.t1 | AT3G60320 | 28.529 | 333 | 198 | 9 | 273 | 570 | 357 | 684 | 3.24e-29 | 123 |
| MS.gene073063.t1 | AT3G60320 | 46.847 | 111 | 55 | 2 | 1 | 111 | 1 | 107 | 5.16e-16 | 82.0 |
| MS.gene073063.t1 | AT3G51290 | 28.743 | 334 | 192 | 9 | 273 | 570 | 202 | 525 | 1.38e-28 | 120 |
| MS.gene073063.t1 | AT1G20530 | 23.551 | 535 | 325 | 17 | 1 | 510 | 1 | 476 | 3.38e-24 | 107 |
| MS.gene073063.t1 | AT2G19090 | 27.778 | 306 | 169 | 8 | 271 | 532 | 385 | 682 | 3.91e-20 | 95.1 |
| MS.gene073063.t1 | AT1G77500 | 27.273 | 264 | 162 | 7 | 273 | 510 | 451 | 710 | 9.78e-19 | 90.9 |
| MS.gene073063.t1 | AT4G35240 | 25.379 | 264 | 165 | 7 | 275 | 515 | 423 | 677 | 4.14e-18 | 89.0 |
| MS.gene073063.t1 | AT4G35240 | 25.379 | 264 | 165 | 7 | 275 | 515 | 423 | 677 | 4.14e-18 | 89.0 |
| MS.gene073063.t1 | AT4G35240 | 25.379 | 264 | 165 | 7 | 275 | 515 | 423 | 677 | 4.59e-18 | 88.6 |
| MS.gene073063.t1 | AT4G35240 | 25.379 | 264 | 165 | 7 | 275 | 515 | 423 | 677 | 4.59e-18 | 88.6 |
| MS.gene073063.t1 | AT1G21740 | 24.926 | 337 | 203 | 10 | 211 | 514 | 443 | 762 | 6.89e-18 | 88.2 |
| MS.gene073063.t1 | AT2G17110 | 24.903 | 257 | 172 | 6 | 275 | 510 | 313 | 569 | 4.91e-16 | 82.0 |
| MS.gene073063.t1 | AT4G30130 | 38.554 | 83 | 51 | 0 | 352 | 434 | 398 | 480 | 7.37e-14 | 74.7 |
| MS.gene073063.t1 | AT4G30130 | 38.554 | 83 | 51 | 0 | 352 | 434 | 398 | 480 | 7.37e-14 | 74.7 |
| MS.gene073063.t1 | AT2G34670 | 48.333 | 60 | 31 | 0 | 1 | 60 | 1 | 60 | 4.90e-11 | 66.2 |
| MS.gene073063.t1 | AT2G34670 | 48.333 | 60 | 31 | 0 | 1 | 60 | 1 | 60 | 5.68e-11 | 65.9 |
Find 132 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTATGGATATGGATAATA+TGG | 0.114095 | 3.3:-89906374 | MS.gene073063:CDS |
| GGCTTGGGATTATTTCTTTA+TGG | 0.126467 | 3.3:-89906389 | MS.gene073063:CDS |
| GCGCCATCTTCTCCTTCTTC+TGG | 0.159074 | 3.3:-89906457 | MS.gene073063:CDS |
| GGATTATTTCTTTATGGATA+TGG | 0.176860 | 3.3:-89906383 | MS.gene073063:CDS |
| GCCTTCGCCGCCGGTCATTC+AGG | 0.243027 | 3.3:-89906808 | MS.gene073063:CDS |
| ATAACAAGAGCAACAAGTTT+TGG | 0.264787 | 3.3:+89905164 | None:intergenic |
| AGAAACACATGCCACTGTTT+TGG | 0.288622 | 3.3:-89905628 | MS.gene073063:CDS |
| GGTGAGAATGTTGATGTTAA+TGG | 0.289655 | 3.3:-89906295 | MS.gene073063:CDS |
| GAGGAAGAGGATGAAGTTAA+AGG | 0.292857 | 3.3:-89904166 | MS.gene073063:CDS |
| CTCAACTTTCTCCGGTGTCT+TGG | 0.318035 | 3.3:+89906246 | None:intergenic |
| TTCTAATTTCGCTGATGGTC+GGG | 0.320744 | 3.3:-89905987 | MS.gene073063:CDS |
| ACAACTGAGAATCGCGAATA+TGG | 0.320972 | 3.3:+89905189 | None:intergenic |
| TCCAAAGGCGGTGGAGGTTT+AGG | 0.322625 | 3.3:+89906679 | None:intergenic |
| CGCCATCTTCTCCTTCTTCT+GGG | 0.323153 | 3.3:-89906456 | MS.gene073063:CDS |
| TGAGGTTGATGTGTATAATA+AGG | 0.342260 | 3.3:-89906227 | MS.gene073063:CDS |
| TCCTAAACCTCCACCGCCTT+TGG | 0.343046 | 3.3:-89906680 | MS.gene073063:CDS |
| ATAATCCCAAGCCATGTTCT+TGG | 0.359746 | 3.3:+89906399 | None:intergenic |
| TGAGTTTAGAAGAGCAATTA+AGG | 0.371298 | 3.3:-89906128 | MS.gene073063:CDS |
| AGAGAAGCCGGTGAGAAATT+AGG | 0.374879 | 3.3:+89906625 | None:intergenic |
| TCAACTTTCTCCGGTGTCTT+GGG | 0.378191 | 3.3:+89906247 | None:intergenic |
| GGCGGAAGAGGCGGTGGAGG+AGG | 0.380266 | 3.3:+89906646 | None:intergenic |
| GAACATATTCTCCCACATAT+TGG | 0.386881 | 3.3:+89904576 | None:intergenic |
| GATGCCGCCACCGCCTTTGC+CGG | 0.392756 | 3.3:-89906425 | MS.gene073063:CDS |
| GCAGATTTCGCTAGCTCGTC+AGG | 0.404088 | 3.3:+89904237 | None:intergenic |
| TGATATTTCTCAAGATCATA+AGG | 0.409383 | 3.3:-89904506 | MS.gene073063:CDS |
| GAAGAGGCGGTGGAGGAGGG+AGG | 0.409543 | 3.3:+89906650 | None:intergenic |
| GCTCGTAATGCCTTCGCCGC+CGG | 0.417087 | 3.3:-89906817 | MS.gene073063:CDS |
| GAGAAATATCAAGAGATTTG+AGG | 0.419497 | 3.3:+89904518 | None:intergenic |
| GAGAACTAAGAATCTGCATA+AGG | 0.420407 | 3.3:+89906089 | None:intergenic |
| GATAAAGACGATCATACTTC+AGG | 0.426327 | 3.3:-89904192 | MS.gene073063:CDS |
| CTAAGATGCTTGAAGCTACT+AGG | 0.436626 | 3.3:-89906021 | MS.gene073063:CDS |
| CAAGCCATGTTCTTGGAATC+CGG | 0.447999 | 3.3:+89906406 | None:intergenic |
| TTCAGGACTGGGCCAATATG+TGG | 0.450747 | 3.3:-89904588 | MS.gene073063:intron |
| TTGTTGAAGAGGTGGAAGAA+GGG | 0.456126 | 3.3:-89906519 | MS.gene073063:CDS |
| ATTCTAATTTCGCTGATGGT+CGG | 0.456595 | 3.3:-89905988 | MS.gene073063:CDS |
| AAGATCGGCGGTGGAATTAG+TGG | 0.472783 | 3.3:-89906553 | MS.gene073063:CDS |
| CGGATTCCAAGAACATGGCT+TGG | 0.478452 | 3.3:-89906405 | MS.gene073063:CDS |
| TATCATTCTAATTTCGCTGA+TGG | 0.478716 | 3.3:-89905992 | MS.gene073063:CDS |
| CATTCAAGGGTGTATCCAAT+GGG | 0.479178 | 3.3:-89905686 | MS.gene073063:CDS |
| ACATCCAAGCTCTTTATAGC+TGG | 0.481961 | 3.3:-89904382 | MS.gene073063:CDS |
| TTGGAATCCGGCAAAGGCGG+TGG | 0.482836 | 3.3:+89906418 | None:intergenic |
| ATACTTCAGGCAGGAGGAAG+AGG | 0.486062 | 3.3:-89904179 | MS.gene073063:CDS |
| GGATTCCAAGAACATGGCTT+GGG | 0.486447 | 3.3:-89906404 | MS.gene073063:CDS |
| ATTGTTGAAGAGGTGGAAGA+AGG | 0.490175 | 3.3:-89906520 | MS.gene073063:CDS |
| GATGAGATTGAGAATGAAGA+AGG | 0.491897 | 3.3:-89906328 | MS.gene073063:CDS |
| TTAGGCGGAAGAGGCGGTGG+AGG | 0.494227 | 3.3:+89906643 | None:intergenic |
| GAATCCGGCAAAGGCGGTGG+CGG | 0.494775 | 3.3:+89906421 | None:intergenic |
| ATTGCTCTTCTAAACTCAGC+AGG | 0.495940 | 3.3:+89906133 | None:intergenic |
| GGCGCCAGTGTTGAATCATT+AGG | 0.496446 | 3.3:-89905296 | MS.gene073063:CDS |
| CAGTTACAGCACCGCAAGAT+CGG | 0.497409 | 3.3:-89906568 | MS.gene073063:CDS |
| GGGAAGAGGTTCTTTGAATG+AGG | 0.498151 | 3.3:-89906353 | MS.gene073063:CDS |
| TCTAATTTCGCTGATGGTCG+GGG | 0.499933 | 3.3:-89905986 | MS.gene073063:intron |
| AGAACTAAGAATCTGCATAA+GGG | 0.500689 | 3.3:+89906090 | None:intergenic |
| ACCTGAATGACCGGCGGCGA+AGG | 0.502395 | 3.3:+89906807 | None:intergenic |
| TAATCATGCATGCATAAAGA+AGG | 0.506374 | 3.3:+89904273 | None:intergenic |
| AAATTAGGCGGAAGAGGCGG+TGG | 0.507309 | 3.3:+89906640 | None:intergenic |
| GATTCTTCCAAAGGCGGTGG+AGG | 0.508145 | 3.3:+89906673 | None:intergenic |
| TGCAAGTGATAACATGGAAT+CGG | 0.508476 | 3.3:-89905710 | MS.gene073063:CDS |
| GCGGAAGAGGCGGTGGAGGA+GGG | 0.508892 | 3.3:+89906647 | None:intergenic |
| TTTATGGATATGGATAATAT+GGG | 0.509779 | 3.3:-89906373 | MS.gene073063:CDS |
| TCTTGTGTGTAAATGACTTA+CGG | 0.517302 | 3.3:+89905259 | None:intergenic |
| CAGCACCGCAAGATCGGCGG+TGG | 0.518911 | 3.3:-89906562 | MS.gene073063:CDS |
| CGGTCATTCAGGTTATGCTA+TGG | 0.522813 | 3.3:-89906797 | MS.gene073063:CDS |
| GGTGAGAAATTAGGCGGAAG+AGG | 0.523496 | 3.3:+89906634 | None:intergenic |
| TGAGCCAGCTATAAAGAGCT+TGG | 0.525015 | 3.3:+89904378 | None:intergenic |
| GAAGGAGAAGATGGCGCGTG+AGG | 0.530503 | 3.3:+89906463 | None:intergenic |
| ACATCAACCTCAACTTTCTC+CGG | 0.530753 | 3.3:+89906238 | None:intergenic |
| TCATTCAAGGGTGTATCCAA+TGG | 0.533090 | 3.3:-89905687 | MS.gene073063:CDS |
| CTCCCAGAAGAAGGAGAAGA+TGG | 0.534623 | 3.3:+89906454 | None:intergenic |
| AACATGGAATCGGTCATTCA+AGG | 0.539680 | 3.3:-89905700 | MS.gene073063:CDS |
| GGTGTATCCAATGGGGAGGG+TGG | 0.541152 | 3.3:-89905678 | MS.gene073063:CDS |
| ATCACTTTACTCCCAGAAGA+AGG | 0.544452 | 3.3:+89906445 | None:intergenic |
| TTTATCCACTGCAGAAAATG+AGG | 0.547463 | 3.3:+89904209 | None:intergenic |
| GATATGGATAATATGGGAAG+AGG | 0.547615 | 3.3:-89906367 | MS.gene073063:CDS |
| GGCGGTGGAATTAGTGGTGG+AGG | 0.549912 | 3.3:-89906547 | MS.gene073063:CDS |
| ACAGAGCGTTTGAGAGAAGC+CGG | 0.551771 | 3.3:+89906613 | None:intergenic |
| GGATCAGAATGAAGAGGCGG+TGG | 0.555414 | 3.3:+89906700 | None:intergenic |
| TTTGGACAAGTTGTTAGCAT+GGG | 0.555933 | 3.3:-89905610 | MS.gene073063:CDS |
| AAGAGGCGGTGGAGGAGGGA+GGG | 0.557539 | 3.3:+89906651 | None:intergenic |
| TAATTCCACCGCCGATCTTG+CGG | 0.558644 | 3.3:+89906557 | None:intergenic |
| CATAGCATAACCTGAATGAC+CGG | 0.563400 | 3.3:+89906798 | None:intergenic |
| TGCTGTAACTGCAACGACAC+AGG | 0.563887 | 3.3:+89906580 | None:intergenic |
| ACATGGAATCGGTCATTCAA+GGG | 0.566506 | 3.3:-89905699 | MS.gene073063:CDS |
| TTCTTGGAATCCGGCAAAGG+CGG | 0.566851 | 3.3:+89906415 | None:intergenic |
| AGGGATTCTTCCAAAGGCGG+TGG | 0.573076 | 3.3:+89906670 | None:intergenic |
| AGTTTCGCCGTGAGCGTAGT+CGG | 0.573795 | 3.3:+89906747 | None:intergenic |
| AATGAAGAAGGTGAAATTGA+AGG | 0.580423 | 3.3:-89906316 | MS.gene073063:CDS |
| TATTGTTGATATGCAGTCGA+TGG | 0.581443 | 3.3:-89905234 | MS.gene073063:CDS |
| GAAGAGGTGGAAGAAGGGAA+AGG | 0.581945 | 3.3:-89906514 | MS.gene073063:CDS |
| GGGAAAGGCGGTGATGCTGA+TGG | 0.584993 | 3.3:-89906499 | MS.gene073063:CDS |
| TGGAGGTGACATTGTTGAAG+AGG | 0.585814 | 3.3:-89906530 | MS.gene073063:CDS |
| GAAACTCTATGAAGAAGTCA+AGG | 0.586792 | 3.3:-89905583 | MS.gene073063:intron |
| GAGGTGGAAGAAGGGAAAGG+CGG | 0.588013 | 3.3:-89906511 | MS.gene073063:CDS |
| GTAGTCGGAGAGAGCGGCGC+CGG | 0.592343 | 3.3:+89906762 | None:intergenic |
| AAGACGATCATACTTCAGGC+AGG | 0.592420 | 3.3:-89904188 | MS.gene073063:CDS |
| GAGTCATGCAAGTGATAACA+TGG | 0.593246 | 3.3:-89905716 | MS.gene073063:CDS |
| AGGTGACATTGTTGAAGAGG+TGG | 0.593877 | 3.3:-89906527 | MS.gene073063:CDS |
| GGACTCAACAGTTTCTGAAG+TGG | 0.596338 | 3.3:-89905213 | MS.gene073063:CDS |
| GCTGCGGTCGTAATGATGCT+TGG | 0.603311 | 3.3:+89904477 | None:intergenic |
| AATCATGCATGCATAAAGAA+GGG | 0.603816 | 3.3:+89904274 | None:intergenic |
| ATGTTCTTGGAATCCGGCAA+AGG | 0.605757 | 3.3:+89906412 | None:intergenic |
| TCTTCCGCCTAATTTCTCAC+CGG | 0.608905 | 3.3:-89906632 | MS.gene073063:CDS |
| GGAGGGAGGGATTCTTCCAA+AGG | 0.620699 | 3.3:+89906664 | None:intergenic |
| TCAGGACTGGGCCAATATGT+GGG | 0.620712 | 3.3:-89904587 | MS.gene073063:intron |
| CAAGGGTGTATCCAATGGGG+AGG | 0.622313 | 3.3:-89905682 | MS.gene073063:CDS |
| GCTCTCTCCGACTACGCTCA+CGG | 0.622545 | 3.3:-89906754 | MS.gene073063:CDS |
| ATCTGCATAAGGGTAACAGA+AGG | 0.622988 | 3.3:+89906100 | None:intergenic |
| CTGAACAAGCAGAAGAAGCG+TGG | 0.626103 | 3.3:-89905317 | MS.gene073063:CDS |
| TTTGCCGGATTCCAAGAACA+TGG | 0.627689 | 3.3:-89906410 | MS.gene073063:CDS |
| ATCGGCGGTGGAATTAGTGG+TGG | 0.630858 | 3.3:-89906550 | MS.gene073063:CDS |
| TGAGATTGAACCCAAGACAC+CGG | 0.633573 | 3.3:-89906257 | MS.gene073063:CDS |
| GGAGCATGAACATGTACATG+AGG | 0.635866 | 3.3:-89906206 | MS.gene073063:CDS |
| CAAGACACCGGAGAAAGTTG+AGG | 0.641109 | 3.3:-89906245 | MS.gene073063:CDS |
| TGAGGATGATGTGATAAGAG+AGG | 0.648109 | 3.3:-89906188 | MS.gene073063:CDS |
| GGCGGCGAAGGCATTACGAG+CGG | 0.649430 | 3.3:+89906819 | None:intergenic |
| GTGAGCGTAGTCGGAGAGAG+CGG | 0.649810 | 3.3:+89906756 | None:intergenic |
| GAGAAATTAGGCGGAAGAGG+CGG | 0.650849 | 3.3:+89906637 | None:intergenic |
| GGTTTAGGATCAGAATGAAG+AGG | 0.652248 | 3.3:+89906694 | None:intergenic |
| TTACAGCACCGCAAGATCGG+CGG | 0.652795 | 3.3:-89906565 | MS.gene073063:CDS |
| GAGAATGTTGATGTTAATGG+AGG | 0.660500 | 3.3:-89906292 | MS.gene073063:CDS |
| TGATGTTAATGGAGGACATG+TGG | 0.660982 | 3.3:-89906284 | MS.gene073063:CDS |
| AAGGGTGTATCCAATGGGGA+GGG | 0.663838 | 3.3:-89905681 | MS.gene073063:CDS |
| TGTTAATGGAGGACATGTGG+AGG | 0.675457 | 3.3:-89906281 | MS.gene073063:CDS |
| GAAGCCGGTGAGAAATTAGG+CGG | 0.684519 | 3.3:+89906628 | None:intergenic |
| GGGAGGGATTCTTCCAAAGG+CGG | 0.689716 | 3.3:+89906667 | None:intergenic |
| GTTTAGAAGAGCAATTAAGG+TGG | 0.690000 | 3.3:-89906125 | MS.gene073063:CDS |
| ACGATCATACTTCAGGCAGG+AGG | 0.694672 | 3.3:-89904185 | MS.gene073063:CDS |
| TGTAACTGCAACGACACAGG+CGG | 0.699824 | 3.3:+89906583 | None:intergenic |
| TTAGGATCAGAATGAAGAGG+CGG | 0.705551 | 3.3:+89906697 | None:intergenic |
| AGCATAACCTGAATGACCGG+CGG | 0.709251 | 3.3:+89906801 | None:intergenic |
| TAACAACTTGTCCAAAACAG+TGG | 0.715371 | 3.3:+89905617 | None:intergenic |
| ATTCAAGGGTGTATCCAATG+GGG | 0.730624 | 3.3:-89905685 | MS.gene073063:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACATTAAAATAAACTT+CGG | + | chr3.3:89906277-89906296 | None:intergenic | 15.0% |
| !!! | CAATAAGTGAAATTTTAAAA+AGG | + | chr3.3:89905675-89905694 | None:intergenic | 15.0% |
| !! | ACAACTAGAGTTTAAAAAAA+AGG | + | chr3.3:89905235-89905254 | None:intergenic | 20.0% |
| !! | ACTGAAGTTGAATAAAATAA+AGG | + | chr3.3:89905130-89905149 | None:intergenic | 20.0% |
| !! | TTTATGGATATGGATAATAT+GGG | - | chr3.3:89904691-89904710 | MS.gene073063:intron | 20.0% |
| !!! | GAAAGTATAAATGTCAAAAA+TGG | + | chr3.3:89905520-89905539 | None:intergenic | 20.0% |
| !!! | TAGAATATATTTTGCAACAT+CGG | + | chr3.3:89906155-89906174 | None:intergenic | 20.0% |
| !!! | TATTTGTCATTTAAATTCTG+AGG | - | chr3.3:89906243-89906262 | MS.gene073063:CDS | 20.0% |
| ! | ACAAATATAGATTGAGATCT+AGG | + | chr3.3:89906230-89906249 | None:intergenic | 25.0% |
| ! | AGAGTTTAAAAAAAAGGTCT+AGG | + | chr3.3:89905229-89905248 | None:intergenic | 25.0% |
| ! | ATCATTAGGAAAAACTAAAG+CGG | - | chr3.3:89905782-89905801 | MS.gene073063:intron | 25.0% |
| ! | CTTTATGGATATGGATAATA+TGG | - | chr3.3:89904690-89904709 | MS.gene073063:intron | 25.0% |
| ! | TAAAATAAACTTCGGTATCT+AGG | + | chr3.3:89906269-89906288 | None:intergenic | 25.0% |
| ! | TGATATTTCTCAAGATCATA+AGG | - | chr3.3:89906558-89906577 | MS.gene073063:CDS | 25.0% |
| ! | TGATGCAAAAAATAGAAACT+TGG | + | chr3.3:89906408-89906427 | None:intergenic | 25.0% |
| ! | TTTCTAGATTTCAATTGTTC+TGG | - | chr3.3:89906335-89906354 | MS.gene073063:CDS | 25.0% |
| !! | CATATAAAATGCTTTTCGAT+TGG | + | chr3.3:89906197-89906216 | None:intergenic | 25.0% |
| !! | GGATTATTTCTTTATGGATA+TGG | - | chr3.3:89904681-89904700 | MS.gene073063:intron | 25.0% |
| !!! | TCTATTTTTTGCATCACAAA+TGG | - | chr3.3:89906412-89906431 | MS.gene073063:CDS | 25.0% |
| AAAGCTAACTAACAAGATGA+AGG | + | chr3.3:89905542-89905561 | None:intergenic | 30.0% | |
| AATCATGCATGCATAAAGAA+GGG | + | chr3.3:89906793-89906812 | None:intergenic | 30.0% | |
| AATGAAGAAGGTGAAATTGA+AGG | - | chr3.3:89904748-89904767 | MS.gene073063:intron | 30.0% | |
| AGAACTAAGAATCTGCATAA+GGG | + | chr3.3:89904977-89904996 | None:intergenic | 30.0% | |
| CAATTTGGATAATGACATCA+AGG | + | chr3.3:89905202-89905221 | None:intergenic | 30.0% | |
| CTAACATTCAAGACTAATTC+AGG | + | chr3.3:89906108-89906127 | None:intergenic | 30.0% | |
| CTAAGATATCAAATAAGCAC+AGG | + | chr3.3:89905972-89905991 | None:intergenic | 30.0% | |
| GAATCTACTTGATTTCTTTC+AGG | - | chr3.3:89906459-89906478 | MS.gene073063:CDS | 30.0% | |
| GAGAAATATCAAGAGATTTG+AGG | + | chr3.3:89906549-89906568 | None:intergenic | 30.0% | |
| GATTTCAATTGTTCTGGTAT+TGG | - | chr3.3:89906341-89906360 | MS.gene073063:CDS | 30.0% | |
| GTGCTTATTTGATATCTTAG+TGG | - | chr3.3:89905972-89905991 | MS.gene073063:intron | 30.0% | |
| TAATCATGCATGCATAAAGA+AGG | + | chr3.3:89906794-89906813 | None:intergenic | 30.0% | |
| TATCATTCTAATTTCGCTGA+TGG | - | chr3.3:89905072-89905091 | MS.gene073063:intron | 30.0% | |
| TCAAGTAGATTCATGAATCA+TGG | + | chr3.3:89906451-89906470 | None:intergenic | 30.0% | |
| TCTTGTGTGTAAATGACTTA+CGG | + | chr3.3:89905808-89905827 | None:intergenic | 30.0% | |
| TGAGTTTAGAAGAGCAATTA+AGG | - | chr3.3:89904936-89904955 | MS.gene073063:intron | 30.0% | |
| TGATGTCATTATCCAAATTG+CGG | - | chr3.3:89905202-89905221 | MS.gene073063:CDS | 30.0% | |
| TGTAAAGTGACACGATTATT+AGG | + | chr3.3:89906308-89906327 | None:intergenic | 30.0% | |
| TTGGAATGTAATCCAAGAAT+GGG | - | chr3.3:89906620-89906639 | MS.gene073063:CDS | 30.0% | |
| ! | ATAACAAGAGCAACAAGTTT+TGG | + | chr3.3:89905903-89905922 | None:intergenic | 30.0% |
| ! | ATTGGTAAAGGAAGTTTTCA+AGG | + | chr3.3:89906056-89906075 | None:intergenic | 30.0% |
| ! | GATTGTGTGTAGCAAAATTT+TGG | + | chr3.3:89906380-89906399 | None:intergenic | 30.0% |
| ! | TTTGGAATGTAATCCAAGAA+TGG | - | chr3.3:89906619-89906638 | MS.gene073063:CDS | 30.0% |
| ! | TTTTCCTAATGATTCAACAC+TGG | + | chr3.3:89905775-89905794 | None:intergenic | 30.0% |
| !! | AAACTTGTTGCTCTTGTTAT+TGG | - | chr3.3:89905903-89905922 | MS.gene073063:intron | 30.0% |
| !! | AACTTGTTGCTCTTGTTATT+GGG | - | chr3.3:89905904-89905923 | MS.gene073063:intron | 30.0% |
| !! | TAACTTGTTGCTCTTAATGA+GGG | - | chr3.3:89905645-89905664 | MS.gene073063:CDS | 30.0% |
| !! | TGAGGTTGATGTGTATAATA+AGG | - | chr3.3:89904837-89904856 | MS.gene073063:intron | 30.0% |
| !!! | GAGACGAGATTTTTTCTTTT+AGG | + | chr3.3:89906740-89906759 | None:intergenic | 30.0% |
| !!! | GTTTAAGGTTTTTAGTTAGC+TGG | - | chr3.3:89905260-89905279 | MS.gene073063:CDS | 30.0% |
| ACTTGATTTCTTTCAGGACT+GGG | - | chr3.3:89906465-89906484 | MS.gene073063:CDS | 35.0% | |
| ATTCTAATTTCGCTGATGGT+CGG | - | chr3.3:89905076-89905095 | MS.gene073063:intron | 35.0% | |
| CTCTAGTTGTGTGAAGTTTA+AGG | - | chr3.3:89905245-89905264 | MS.gene073063:CDS | 35.0% | |
| GAAACTCTATGAAGAAGTCA+AGG | - | chr3.3:89905481-89905500 | MS.gene073063:intron | 35.0% | |
| GAACATATTCTCCCACATAT+TGG | + | chr3.3:89906491-89906510 | None:intergenic | 35.0% | |
| GAGAACTAAGAATCTGCATA+AGG | + | chr3.3:89904978-89904997 | None:intergenic | 35.0% | |
| GAGAATGTTGATGTTAATGG+AGG | - | chr3.3:89904772-89904791 | MS.gene073063:intron | 35.0% | |
| GATAAAGACGATCATACTTC+AGG | - | chr3.3:89906872-89906891 | MS.gene073063:CDS | 35.0% | |
| GATATGGATAATATGGGAAG+AGG | - | chr3.3:89904697-89904716 | MS.gene073063:intron | 35.0% | |
| GATGAGATTGAGAATGAAGA+AGG | - | chr3.3:89904736-89904755 | MS.gene073063:intron | 35.0% | |
| GGTGAGAATGTTGATGTTAA+TGG | - | chr3.3:89904769-89904788 | MS.gene073063:intron | 35.0% | |
| GTCCTAAATTTCATGCTTGT+TGG | - | chr3.3:89906082-89906101 | MS.gene073063:CDS | 35.0% | |
| GTTTAGAAGAGCAATTAAGG+TGG | - | chr3.3:89904939-89904958 | MS.gene073063:intron | 35.0% | |
| TAACAACTTGTCCAAAACAG+TGG | + | chr3.3:89905450-89905469 | None:intergenic | 35.0% | |
| TACTTGATTTCTTTCAGGAC+TGG | - | chr3.3:89906464-89906483 | MS.gene073063:CDS | 35.0% | |
| TATTGTTGATATGCAGTCGA+TGG | - | chr3.3:89905830-89905849 | MS.gene073063:intron | 35.0% | |
| TGCAAGTGATAACATGGAAT+CGG | - | chr3.3:89905354-89905373 | MS.gene073063:CDS | 35.0% | |
| TTTATCCACTGCAGAAAATG+AGG | + | chr3.3:89906858-89906877 | None:intergenic | 35.0% | |
| TTTGGACAAGTTGTTAGCAT+GGG | - | chr3.3:89905454-89905473 | MS.gene073063:intron | 35.0% | |
| ! | ATATCTCTTTGACTTCCCAT+TGG | + | chr3.3:89905939-89905958 | None:intergenic | 35.0% |
| ! | ATTGGGTAAGTATTGCCAAT+GGG | - | chr3.3:89905921-89905940 | MS.gene073063:intron | 35.0% |
| ! | CTTCACGCATTAAGTTTTTG+CGG | + | chr3.3:89904219-89904238 | None:intergenic | 35.0% |
| ! | GAAATTTAGGACGTTGTCAT+TGG | + | chr3.3:89906074-89906093 | None:intergenic | 35.0% |
| ! | GGCTTGGGATTATTTCTTTA+TGG | - | chr3.3:89904675-89904694 | MS.gene073063:intron | 35.0% |
| ! | TATTACCTCATTTTCTGCAG+TGG | - | chr3.3:89906850-89906869 | MS.gene073063:CDS | 35.0% |
| ! | TATTGGGTAAGTATTGCCAA+TGG | - | chr3.3:89905920-89905939 | MS.gene073063:intron | 35.0% |
| ! | TGATTTGCAATGACATTAGC+AGG | - | chr3.3:89905305-89905324 | MS.gene073063:CDS | 35.0% |
| ! | TTTTGGACAAGTTGTTAGCA+TGG | - | chr3.3:89905453-89905472 | MS.gene073063:intron | 35.0% |
| !! | AGTTTTCAAGGAAGTTCACA+AGG | + | chr3.3:89906044-89906063 | None:intergenic | 35.0% |
| !! | GTAACTTGTTGCTCTTAATG+AGG | - | chr3.3:89905644-89905663 | MS.gene073063:CDS | 35.0% |
| !!! | GTGACCAAAGTTTTAAATCG+CGG | - | chr3.3:89905164-89905183 | MS.gene073063:intron | 35.0% |
| !!! | TCTTTTAGGTTGCTTTCGAT+GGG | + | chr3.3:89906726-89906745 | None:intergenic | 35.0% |
| !!! | TGACCAAAGTTTTAAATCGC+GGG | - | chr3.3:89905165-89905184 | MS.gene073063:intron | 35.0% |
| !!! | TTCTTTTAGGTTGCTTTCGA+TGG | + | chr3.3:89906727-89906746 | None:intergenic | 35.0% |
| AACATGGAATCGGTCATTCA+AGG | - | chr3.3:89905364-89905383 | MS.gene073063:CDS | 40.0% | |
| ACAACTGAGAATCGCGAATA+TGG | + | chr3.3:89905878-89905897 | None:intergenic | 40.0% | |
| ACATCAACCTCAACTTTCTC+CGG | + | chr3.3:89904829-89904848 | None:intergenic | 40.0% | |
| ACATCCAAGCTCTTTATAGC+TGG | - | chr3.3:89906682-89906701 | MS.gene073063:CDS | 40.0% | |
| ACATGGAATCGGTCATTCAA+GGG | - | chr3.3:89905365-89905384 | MS.gene073063:CDS | 40.0% | |
| ATAATCCCAAGCCATGTTCT+TGG | + | chr3.3:89904668-89904687 | None:intergenic | 40.0% | |
| ATCACTTTACTCCCAGAAGA+AGG | + | chr3.3:89904622-89904641 | None:intergenic | 40.0% | |
| ATCTGCATAAGGGTAACAGA+AGG | + | chr3.3:89904967-89904986 | None:intergenic | 40.0% | |
| ATTACATTCCAAAGCTGGCA+CGG | + | chr3.3:89906612-89906631 | None:intergenic | 40.0% | |
| ATTGCTCTTCTAAACTCAGC+AGG | + | chr3.3:89904934-89904953 | None:intergenic | 40.0% | |
| ATTGTTGAAGAGGTGGAAGA+AGG | - | chr3.3:89904544-89904563 | MS.gene073063:CDS | 40.0% | |
| CAAATTGTGACTCCCATTCT+TGG | + | chr3.3:89906635-89906654 | None:intergenic | 40.0% | |
| CATAGCATAACCTGAATGAC+CGG | + | chr3.3:89904269-89904288 | None:intergenic | 40.0% | |
| CTAAGATGCTTGAAGCTACT+AGG | - | chr3.3:89905043-89905062 | MS.gene073063:intron | 40.0% | |
| CTTGGATTACATTCCAAAGC+TGG | + | chr3.3:89906617-89906636 | None:intergenic | 40.0% | |
| GAGGAAGAGGATGAAGTTAA+AGG | - | chr3.3:89906898-89906917 | MS.gene073063:CDS | 40.0% | |
| GAGTCATGCAAGTGATAACA+TGG | - | chr3.3:89905348-89905367 | MS.gene073063:CDS | 40.0% | |
| GGCCAACAAGCATGAAATTT+AGG | + | chr3.3:89906087-89906106 | None:intergenic | 40.0% | |
| TAGAAAACACGACAGTACAG+TGG | + | chr3.3:89905592-89905611 | None:intergenic | 40.0% | |
| TAGGACGTTGTCATTGGTAA+AGG | + | chr3.3:89906068-89906087 | None:intergenic | 40.0% | |
| TGAGGATGATGTGATAAGAG+AGG | - | chr3.3:89904876-89904895 | MS.gene073063:intron | 40.0% | |
| TGATGTTAATGGAGGACATG+TGG | - | chr3.3:89904780-89904799 | MS.gene073063:intron | 40.0% | |
| TTAGCTGGAATTGACATGCA+AGG | - | chr3.3:89905275-89905294 | MS.gene073063:CDS | 40.0% | |
| TTAGGATCAGAATGAAGAGG+CGG | + | chr3.3:89904370-89904389 | None:intergenic | 40.0% | |
| TTCACTTATTGTCGACAGCA+AGG | - | chr3.3:89905684-89905703 | MS.gene073063:CDS | 40.0% | |
| TTCTAATTTCGCTGATGGTC+GGG | - | chr3.3:89905077-89905096 | MS.gene073063:intron | 40.0% | |
| TTGTTGAAGAGGTGGAAGAA+GGG | - | chr3.3:89904545-89904564 | MS.gene073063:CDS | 40.0% | |
| ! | AGAAACACATGCCACTGTTT+TGG | - | chr3.3:89905436-89905455 | MS.gene073063:intron | 40.0% |
| ! | ATTCAAGGGTGTATCCAATG+GGG | - | chr3.3:89905379-89905398 | MS.gene073063:intron | 40.0% |
| ! | CATTCAAGGGTGTATCCAAT+GGG | - | chr3.3:89905378-89905397 | MS.gene073063:intron | 40.0% |
| ! | GGTCTGTAACTATTTTCAGC+TGG | + | chr3.3:89906528-89906547 | None:intergenic | 40.0% |
| ! | GGTTTAGGATCAGAATGAAG+AGG | + | chr3.3:89904373-89904392 | None:intergenic | 40.0% |
| ! | TCATTCAAGGGTGTATCCAA+TGG | - | chr3.3:89905377-89905396 | MS.gene073063:intron | 40.0% |
| ! | TTGCAACATCGGTTACTACT+AGG | + | chr3.3:89906144-89906163 | None:intergenic | 40.0% |
| AAGACGATCATACTTCAGGC+AGG | - | chr3.3:89906876-89906895 | MS.gene073063:CDS | 45.0% | |
| AGAGAAGCCGGTGAGAAATT+AGG | + | chr3.3:89904442-89904461 | None:intergenic | 45.0% | |
| AGGTGACATTGTTGAAGAGG+TGG | - | chr3.3:89904537-89904556 | MS.gene073063:CDS | 45.0% | |
| ATCGGTTACTACTAGGATGC+TGG | + | chr3.3:89906137-89906156 | None:intergenic | 45.0% | |
| ATGTTCTTGGAATCCGGCAA+AGG | + | chr3.3:89904655-89904674 | None:intergenic | 45.0% | |
| CAAGCCATGTTCTTGGAATC+CGG | + | chr3.3:89904661-89904680 | None:intergenic | 45.0% | |
| GCATAAAGAAGGGCTTGGAT+TGG | + | chr3.3:89906783-89906802 | None:intergenic | 45.0% | |
| GCTATGGCTCTCAAAAACAC+CGG | - | chr3.3:89904283-89904302 | MS.gene073063:intron | 45.0% | |
| GGAATTGACATGCAAGGTTG+AGG | - | chr3.3:89905281-89905300 | MS.gene073063:CDS | 45.0% | |
| GGAGCATGAACATGTACATG+AGG | - | chr3.3:89904858-89904877 | MS.gene073063:intron | 45.0% | |
| GGATTCCAAGAACATGGCTT+GGG | - | chr3.3:89904660-89904679 | MS.gene073063:intron | 45.0% | |
| GGGAAGAGGTTCTTTGAATG+AGG | - | chr3.3:89904711-89904730 | MS.gene073063:intron | 45.0% | |
| TCAACTTTCTCCGGTGTCTT+GGG | + | chr3.3:89904820-89904839 | None:intergenic | 45.0% | |
| TCGGTTACTACTAGGATGCT+GGG | + | chr3.3:89906136-89906155 | None:intergenic | 45.0% | |
| TCTAATTTCGCTGATGGTCG+GGG | - | chr3.3:89905078-89905097 | MS.gene073063:intron | 45.0% | |
| TCTTCCGCCTAATTTCTCAC+CGG | - | chr3.3:89904432-89904451 | MS.gene073063:intron | 45.0% | |
| TGAGATTGAACCCAAGACAC+CGG | - | chr3.3:89904807-89904826 | MS.gene073063:intron | 45.0% | |
| TGAGCCAGCTATAAAGAGCT+TGG | + | chr3.3:89906689-89906708 | None:intergenic | 45.0% | |
| TGCATGCATAAAGAAGGGCT+TGG | + | chr3.3:89906788-89906807 | None:intergenic | 45.0% | |
| TGGAGGTGACATTGTTGAAG+AGG | - | chr3.3:89904534-89904553 | MS.gene073063:CDS | 45.0% | |
| TGTTAATGGAGGACATGTGG+AGG | - | chr3.3:89904783-89904802 | MS.gene073063:intron | 45.0% | |
| TTTGCCGGATTCCAAGAACA+TGG | - | chr3.3:89904654-89904673 | MS.gene073063:intron | 45.0% | |
| ! | AAAGGTCTAGGACCGCAATT+TGG | + | chr3.3:89905217-89905236 | None:intergenic | 45.0% |
| ! | CGGTCATTCAGGTTATGCTA+TGG | - | chr3.3:89904267-89904286 | MS.gene073063:CDS | 45.0% |
| ! | GGACTCAACAGTTTCTGAAG+TGG | - | chr3.3:89905851-89905870 | MS.gene073063:intron | 45.0% |
| ! | GTGCCCGCGATTTAAAACTT+TGG | + | chr3.3:89905171-89905190 | None:intergenic | 45.0% |
| ! | TAAAGAAGGGCTTGGATTGG+TGG | + | chr3.3:89906780-89906799 | None:intergenic | 45.0% |
| !!! | ATTGGTGGATTTTGGGCTCT+TGG | + | chr3.3:89906765-89906784 | None:intergenic | 45.0% |
| !!! | GGCTTGGATTGGTGGATTTT+GGG | + | chr3.3:89906772-89906791 | None:intergenic | 45.0% |
| AAGATCGGCGGTGGAATTAG+TGG | - | chr3.3:89904511-89904530 | MS.gene073063:CDS | 50.0% | |
| ACGATCATACTTCAGGCAGG+AGG | - | chr3.3:89906879-89906898 | MS.gene073063:CDS | 50.0% | |
| AGCATAACCTGAATGACCGG+CGG | + | chr3.3:89904266-89904285 | None:intergenic | 50.0% | |
| ATACTTCAGGCAGGAGGAAG+AGG | - | chr3.3:89906885-89906904 | MS.gene073063:CDS | 50.0% | |
| CAAGACACCGGAGAAAGTTG+AGG | - | chr3.3:89904819-89904838 | MS.gene073063:intron | 50.0% | |
| CAGTTACAGCACCGCAAGAT+CGG | - | chr3.3:89904496-89904515 | MS.gene073063:CDS | 50.0% | |
| CGCCATCTTCTCCTTCTTCT+GGG | - | chr3.3:89904608-89904627 | MS.gene073063:intron | 50.0% | |
| CGGATTCCAAGAACATGGCT+TGG | - | chr3.3:89904659-89904678 | MS.gene073063:intron | 50.0% | |
| CTCAACTTTCTCCGGTGTCT+TGG | + | chr3.3:89904821-89904840 | None:intergenic | 50.0% | |
| CTCCCAGAAGAAGGAGAAGA+TGG | + | chr3.3:89904613-89904632 | None:intergenic | 50.0% | |
| CTGAACAAGCAGAAGAAGCG+TGG | - | chr3.3:89905747-89905766 | MS.gene073063:intron | 50.0% | |
| GAAGAGGTGGAAGAAGGGAA+AGG | - | chr3.3:89904550-89904569 | MS.gene073063:CDS | 50.0% | |
| GAAGCCGGTGAGAAATTAGG+CGG | + | chr3.3:89904439-89904458 | None:intergenic | 50.0% | |
| GAGAAATTAGGCGGAAGAGG+CGG | + | chr3.3:89904430-89904449 | None:intergenic | 50.0% | |
| GGTGAGAAATTAGGCGGAAG+AGG | + | chr3.3:89904433-89904452 | None:intergenic | 50.0% | |
| TAATTCCACCGCCGATCTTG+CGG | + | chr3.3:89904510-89904529 | None:intergenic | 50.0% | |
| TCAGGACTGGGCCAATATGT+GGG | - | chr3.3:89906477-89906496 | MS.gene073063:CDS | 50.0% | |
| TGCTGTAACTGCAACGACAC+AGG | + | chr3.3:89904487-89904506 | None:intergenic | 50.0% | |
| TGTAACTGCAACGACACAGG+CGG | + | chr3.3:89904484-89904503 | None:intergenic | 50.0% | |
| TTCAGGACTGGGCCAATATG+TGG | - | chr3.3:89906476-89906495 | MS.gene073063:CDS | 50.0% | |
| TTCTTGGAATCCGGCAAAGG+CGG | + | chr3.3:89904652-89904671 | None:intergenic | 50.0% | |
| ! | AAGGGTGTATCCAATGGGGA+GGG | - | chr3.3:89905383-89905402 | MS.gene073063:intron | 50.0% |
| ! | ACAGAGCGTTTGAGAGAAGC+CGG | + | chr3.3:89904454-89904473 | None:intergenic | 50.0% |
| ! | ATCTTTTCCACCCTCCCCAT+TGG | + | chr3.3:89905396-89905415 | None:intergenic | 50.0% |
| ! | GGCGCCAGTGTTGAATCATT+AGG | - | chr3.3:89905768-89905787 | MS.gene073063:intron | 50.0% |
| !!! | GGGCTTGGATTGGTGGATTT+TGG | + | chr3.3:89906773-89906792 | None:intergenic | 50.0% |
| AAATTAGGCGGAAGAGGCGG+TGG | + | chr3.3:89904427-89904446 | None:intergenic | 55.0% | |
| AGGGATTCTTCCAAAGGCGG+TGG | + | chr3.3:89904397-89904416 | None:intergenic | 55.0% | |
| AGTTTCGCCGTGAGCGTAGT+CGG | + | chr3.3:89904320-89904339 | None:intergenic | 55.0% | |
| ATCGGCGGTGGAATTAGTGG+TGG | - | chr3.3:89904514-89904533 | MS.gene073063:CDS | 55.0% | |
| GAGGTGGAAGAAGGGAAAGG+CGG | - | chr3.3:89904553-89904572 | MS.gene073063:CDS | 55.0% | |
| GATTCTTCCAAAGGCGGTGG+AGG | + | chr3.3:89904394-89904413 | None:intergenic | 55.0% | |
| GCAGATTTCGCTAGCTCGTC+AGG | + | chr3.3:89906830-89906849 | None:intergenic | 55.0% | |
| GCGCCATCTTCTCCTTCTTC+TGG | - | chr3.3:89904607-89904626 | MS.gene073063:intron | 55.0% | |
| GCTGCGGTCGTAATGATGCT+TGG | + | chr3.3:89906590-89906609 | None:intergenic | 55.0% | |
| GGAGGGAGGGATTCTTCCAA+AGG | + | chr3.3:89904403-89904422 | None:intergenic | 55.0% | |
| GGATCAGAATGAAGAGGCGG+TGG | + | chr3.3:89904367-89904386 | None:intergenic | 55.0% | |
| GGGAGGGATTCTTCCAAAGG+CGG | + | chr3.3:89904400-89904419 | None:intergenic | 55.0% | |
| TCCAAAGGCGGTGGAGGTTT+AGG | + | chr3.3:89904388-89904407 | None:intergenic | 55.0% | |
| TCCTAAACCTCCACCGCCTT+TGG | - | chr3.3:89904384-89904403 | MS.gene073063:CDS | 55.0% | |
| TTACAGCACCGCAAGATCGG+CGG | - | chr3.3:89904499-89904518 | MS.gene073063:CDS | 55.0% | |
| ! | CAAGGGTGTATCCAATGGGG+AGG | - | chr3.3:89905382-89905401 | MS.gene073063:intron | 55.0% |
| !! | GGTGGATTTTGGGCTCTTGG+CGG | + | chr3.3:89906762-89906781 | None:intergenic | 55.0% |
| GAAGGAGAAGATGGCGCGTG+AGG | + | chr3.3:89904604-89904623 | None:intergenic | 60.0% | |
| GCTCTCTCCGACTACGCTCA+CGG | - | chr3.3:89904310-89904329 | MS.gene073063:intron | 60.0% | |
| GGCGGTGGAATTAGTGGTGG+AGG | - | chr3.3:89904517-89904536 | MS.gene073063:CDS | 60.0% | |
| GGGAAAGGCGGTGATGCTGA+TGG | - | chr3.3:89904565-89904584 | MS.gene073063:CDS | 60.0% | |
| GGTGTATCCAATGGGGAGGG+TGG | - | chr3.3:89905386-89905405 | MS.gene073063:intron | 60.0% | |
| GTGAGCGTAGTCGGAGAGAG+CGG | + | chr3.3:89904311-89904330 | None:intergenic | 60.0% | |
| TTCCAAAGCTGGCACGGCTG+CGG | + | chr3.3:89906606-89906625 | None:intergenic | 60.0% | |
| TTGGAATCCGGCAAAGGCGG+TGG | + | chr3.3:89904649-89904668 | None:intergenic | 60.0% | |
| AAGAGGCGGTGGAGGAGGGA+GGG | + | chr3.3:89904416-89904435 | None:intergenic | 65.0% | |
| ACCTGAATGACCGGCGGCGA+AGG | + | chr3.3:89904260-89904279 | None:intergenic | 65.0% | |
| GAATCCGGCAAAGGCGGTGG+CGG | + | chr3.3:89904646-89904665 | None:intergenic | 65.0% | |
| GCTCGTAATGCCTTCGCCGC+CGG | - | chr3.3:89904247-89904266 | MS.gene073063:CDS | 65.0% | |
| TTAGGCGGAAGAGGCGGTGG+AGG | + | chr3.3:89904424-89904443 | None:intergenic | 65.0% | |
| !! | GGCGGCGAAGGCATTACGAG+CGG | + | chr3.3:89904248-89904267 | None:intergenic | 65.0% |
| CAGCACCGCAAGATCGGCGG+TGG | - | chr3.3:89904502-89904521 | MS.gene073063:CDS | 70.0% | |
| GAAGAGGCGGTGGAGGAGGG+AGG | + | chr3.3:89904417-89904436 | None:intergenic | 70.0% | |
| GACCGCAGCCGTGCCAGCTT+TGG | - | chr3.3:89906601-89906620 | MS.gene073063:CDS | 70.0% | |
| GATGCCGCCACCGCCTTTGC+CGG | - | chr3.3:89904639-89904658 | MS.gene073063:intron | 70.0% | |
| GCCTTCGCCGCCGGTCATTC+AGG | - | chr3.3:89904256-89904275 | MS.gene073063:CDS | 70.0% | |
| GCGGAAGAGGCGGTGGAGGA+GGG | + | chr3.3:89904420-89904439 | None:intergenic | 70.0% | |
| GTAGTCGGAGAGAGCGGCGC+CGG | + | chr3.3:89904305-89904324 | None:intergenic | 70.0% | |
| GGCGGAAGAGGCGGTGGAGG+AGG | + | chr3.3:89904421-89904440 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 89904160 | 89906926 | 89904160 | ID=MS.gene073063 |
| chr3.3 | mRNA | 89904160 | 89906926 | 89904160 | ID=MS.gene073063.t1;Parent=MS.gene073063 |
| chr3.3 | exon | 89905987 | 89906926 | 89905987 | ID=MS.gene073063.t1.exon1;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89905987 | 89906926 | 89905987 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| chr3.3 | exon | 89905584 | 89905759 | 89905584 | ID=MS.gene073063.t1.exon2;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89905584 | 89905759 | 89905584 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| chr3.3 | exon | 89905169 | 89905384 | 89905169 | ID=MS.gene073063.t1.exon3;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89905169 | 89905384 | 89905169 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| chr3.3 | exon | 89904479 | 89904605 | 89904479 | ID=MS.gene073063.t1.exon4;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89904479 | 89904605 | 89904479 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| chr3.3 | exon | 89904332 | 89904449 | 89904332 | ID=MS.gene073063.t1.exon5;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89904332 | 89904449 | 89904332 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| chr3.3 | exon | 89904160 | 89904296 | 89904160 | ID=MS.gene073063.t1.exon6;Parent=MS.gene073063.t1 |
| chr3.3 | CDS | 89904160 | 89904296 | 89904160 | ID=cds.MS.gene073063.t1;Parent=MS.gene073063.t1 |
| Gene Sequence |
| Protein sequence |
