Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074096.t1 | XP_003618833.1 | 94.4 | 269 | 15 | 0 | 1 | 269 | 1 | 269 | 2.30E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074096.t1 | Q5C9I9 | 56.0 | 248 | 109 | 0 | 12 | 259 | 6 | 253 | 2.2e-68 | 260.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074096.t1 | G7KNM8 | 94.4 | 269 | 15 | 0 | 1 | 269 | 1 | 269 | 1.6e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene074096 | 0.848546 | 5.72E-60 | -1.69E-46 |
| MS.gene050584 | MS.gene074096 | 0.854786 | 9.76E-62 | -1.69E-46 |
| MS.gene050585 | MS.gene074096 | 0.816679 | 4.88E-52 | -1.69E-46 |
| MS.gene050587 | MS.gene074096 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene05143 | MS.gene074096 | 0.815134 | 1.08E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene074096 | 0.844335 | 8.06E-59 | -1.69E-46 |
| MS.gene052142 | MS.gene074096 | 0.857304 | 1.79E-62 | -1.69E-46 |
| MS.gene053074 | MS.gene074096 | 0.878841 | 2.03E-69 | -1.69E-46 |
| MS.gene05456 | MS.gene074096 | 0.840966 | 6.32E-58 | -1.69E-46 |
| MS.gene054596 | MS.gene074096 | 0.8295 | 4.97E-55 | -1.69E-46 |
| MS.gene055207 | MS.gene074096 | 0.810702 | 1.01E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene074096 | 0.850084 | 2.13E-60 | -1.69E-46 |
| MS.gene058168 | MS.gene074096 | 0.821359 | 4.21E-53 | -1.69E-46 |
| MS.gene059006 | MS.gene074096 | 0.901978 | 1.55E-78 | -1.69E-46 |
| MS.gene059124 | MS.gene074096 | 0.806437 | 8.23E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074096.t1 | MTR_6g023610 | 94.424 | 269 | 15 | 0 | 1 | 269 | 1 | 269 | 0.0 | 521 |
| MS.gene074096.t1 | MTR_6g023910 | 80.669 | 269 | 52 | 0 | 1 | 269 | 1 | 269 | 1.01e-161 | 449 |
| MS.gene074096.t1 | MTR_6g023590 | 71.321 | 265 | 76 | 0 | 1 | 265 | 1 | 265 | 2.29e-141 | 398 |
| MS.gene074096.t1 | MTR_6g023990 | 70.301 | 266 | 78 | 1 | 1 | 265 | 1 | 266 | 3.93e-137 | 387 |
| MS.gene074096.t1 | MTR_6g023600 | 71.698 | 265 | 75 | 0 | 1 | 265 | 1 | 265 | 5.98e-136 | 384 |
| MS.gene074096.t1 | MTR_6g023950 | 72.797 | 261 | 71 | 0 | 1 | 261 | 1 | 261 | 2.48e-132 | 375 |
| MS.gene074096.t1 | MTR_6g023600 | 70.189 | 265 | 73 | 1 | 1 | 265 | 1 | 259 | 6.90e-130 | 369 |
| MS.gene074096.t1 | MTR_7g110130 | 50.000 | 250 | 124 | 1 | 12 | 261 | 5 | 253 | 1.46e-80 | 244 |
| MS.gene074096.t1 | MTR_2g090165 | 49.600 | 250 | 124 | 2 | 12 | 261 | 5 | 252 | 5.08e-77 | 234 |
| MS.gene074096.t1 | MTR_7g110140 | 48.207 | 251 | 128 | 2 | 11 | 261 | 4 | 252 | 9.20e-75 | 229 |
| MS.gene074096.t1 | MTR_7g110160 | 47.200 | 250 | 112 | 2 | 12 | 261 | 5 | 234 | 1.40e-70 | 218 |
| MS.gene074096.t1 | MTR_7g105460 | 42.912 | 261 | 147 | 2 | 1 | 261 | 1 | 259 | 3.82e-69 | 215 |
| MS.gene074096.t1 | MTR_4g052300 | 45.238 | 252 | 133 | 3 | 8 | 259 | 3 | 249 | 1.99e-66 | 207 |
| MS.gene074096.t1 | MTR_4g052320 | 44.094 | 254 | 138 | 3 | 8 | 261 | 3 | 252 | 2.17e-66 | 207 |
| MS.gene074096.t1 | MTR_4g052340 | 44.177 | 249 | 134 | 3 | 12 | 260 | 13 | 256 | 2.51e-65 | 205 |
| MS.gene074096.t1 | MTR_4g052350 | 44.269 | 253 | 136 | 3 | 12 | 264 | 13 | 260 | 7.76e-65 | 204 |
| MS.gene074096.t1 | MTR_6g035395 | 45.600 | 250 | 121 | 3 | 12 | 261 | 4 | 238 | 9.58e-65 | 202 |
| MS.gene074096.t1 | MTR_6g023940 | 54.673 | 214 | 35 | 3 | 1 | 214 | 1 | 152 | 2.11e-64 | 199 |
| MS.gene074096.t1 | MTR_4g078630 | 45.098 | 255 | 129 | 4 | 12 | 259 | 18 | 268 | 2.20e-62 | 198 |
| MS.gene074096.t1 | MTR_7g071680 | 42.697 | 267 | 131 | 6 | 12 | 259 | 28 | 291 | 1.06e-60 | 194 |
| MS.gene074096.t1 | MTR_7g107670 | 38.722 | 266 | 153 | 5 | 6 | 265 | 26 | 287 | 8.45e-57 | 184 |
| MS.gene074096.t1 | MTR_7g083870 | 39.245 | 265 | 146 | 7 | 6 | 261 | 28 | 286 | 2.25e-54 | 178 |
| MS.gene074096.t1 | MTR_7g105590 | 44.503 | 191 | 104 | 2 | 10 | 200 | 5 | 193 | 1.84e-51 | 167 |
| MS.gene074096.t1 | MTR_7g105580 | 40.800 | 250 | 128 | 4 | 12 | 261 | 7 | 236 | 9.13e-50 | 164 |
| MS.gene074096.t1 | MTR_3g020670 | 36.823 | 277 | 156 | 5 | 4 | 268 | 7 | 276 | 1.37e-48 | 162 |
| MS.gene074096.t1 | MTR_4g084800 | 50.000 | 140 | 69 | 1 | 1 | 140 | 1 | 139 | 3.78e-44 | 147 |
| MS.gene074096.t1 | MTR_3g113870 | 39.070 | 215 | 115 | 6 | 21 | 231 | 29 | 231 | 7.99e-44 | 149 |
| MS.gene074096.t1 | MTR_7g105570 | 34.137 | 249 | 111 | 2 | 13 | 261 | 21 | 216 | 1.97e-37 | 132 |
| MS.gene074096.t1 | MTR_7g094510 | 32.171 | 258 | 163 | 5 | 11 | 262 | 4 | 255 | 5.70e-30 | 113 |
| MS.gene074096.t1 | MTR_1g082760 | 32.830 | 265 | 151 | 8 | 12 | 262 | 39 | 290 | 1.82e-28 | 110 |
| MS.gene074096.t1 | MTR_7g113650 | 31.439 | 264 | 156 | 8 | 12 | 262 | 39 | 290 | 2.19e-28 | 110 |
| MS.gene074096.t1 | MTR_7g094520 | 32.197 | 264 | 169 | 5 | 4 | 262 | 2 | 260 | 4.14e-28 | 108 |
| MS.gene074096.t1 | MTR_4g132850 | 32.271 | 251 | 157 | 6 | 12 | 259 | 6 | 246 | 9.71e-27 | 104 |
| MS.gene074096.t1 | MTR_3g085740 | 29.889 | 271 | 166 | 10 | 1 | 262 | 64 | 319 | 6.25e-23 | 95.9 |
| MS.gene074096.t1 | MTR_4g131740 | 30.418 | 263 | 155 | 8 | 12 | 259 | 39 | 288 | 2.17e-21 | 91.3 |
| MS.gene074096.t1 | MTR_4g058840 | 28.627 | 255 | 155 | 8 | 13 | 252 | 11 | 253 | 5.02e-20 | 87.4 |
| MS.gene074096.t1 | MTR_4g058820 | 28.627 | 255 | 155 | 8 | 13 | 252 | 11 | 253 | 5.02e-20 | 87.4 |
| MS.gene074096.t1 | MTR_4g064887 | 29.545 | 264 | 174 | 8 | 1 | 259 | 1 | 257 | 1.42e-19 | 85.9 |
| MS.gene074096.t1 | MTR_4g058810 | 26.800 | 250 | 166 | 6 | 13 | 252 | 11 | 253 | 1.20e-18 | 83.6 |
| MS.gene074096.t1 | MTR_1g068955 | 30.350 | 257 | 164 | 6 | 11 | 259 | 12 | 261 | 7.53e-18 | 81.6 |
| MS.gene074096.t1 | MTR_1g051165 | 27.132 | 258 | 174 | 8 | 12 | 258 | 13 | 267 | 9.61e-18 | 81.3 |
| MS.gene074096.t1 | MTR_1196s0010 | 31.274 | 259 | 145 | 10 | 16 | 262 | 277 | 514 | 2.72e-17 | 81.6 |
| MS.gene074096.t1 | MTR_3g068175 | 30.075 | 266 | 166 | 10 | 3 | 259 | 5 | 259 | 1.13e-16 | 78.2 |
| MS.gene074096.t1 | MTR_4g064887 | 30.516 | 213 | 139 | 6 | 1 | 208 | 1 | 209 | 1.64e-16 | 76.6 |
| MS.gene074096.t1 | MTR_7g063320 | 29.688 | 256 | 168 | 7 | 13 | 262 | 15 | 264 | 5.04e-16 | 76.3 |
| MS.gene074096.t1 | MTR_7g105560 | 59.701 | 67 | 26 | 1 | 1 | 67 | 1 | 66 | 6.08e-16 | 73.6 |
| MS.gene074096.t1 | MTR_7g063330 | 27.165 | 254 | 174 | 7 | 13 | 261 | 15 | 262 | 1.11e-15 | 75.1 |
| MS.gene074096.t1 | MTR_3g068085 | 28.571 | 273 | 177 | 9 | 2 | 267 | 4 | 265 | 1.73e-15 | 74.7 |
| MS.gene074096.t1 | MTR_8g096580 | 29.148 | 223 | 130 | 8 | 16 | 230 | 48 | 250 | 2.89e-15 | 74.7 |
| MS.gene074096.t1 | MTR_7g063270 | 26.538 | 260 | 168 | 7 | 13 | 261 | 16 | 263 | 8.15e-15 | 72.8 |
| MS.gene074096.t1 | MTR_7g063260 | 27.059 | 255 | 174 | 7 | 13 | 261 | 16 | 264 | 1.10e-14 | 72.4 |
| MS.gene074096.t1 | MTR_3g068175 | 29.630 | 270 | 166 | 11 | 3 | 259 | 5 | 263 | 1.44e-14 | 72.4 |
| MS.gene074096.t1 | MTR_7g063390 | 26.740 | 273 | 179 | 9 | 1 | 261 | 1 | 264 | 1.60e-13 | 68.9 |
| MS.gene074096.t1 | MTR_8g096620 | 27.919 | 197 | 130 | 6 | 13 | 204 | 45 | 234 | 2.67e-13 | 69.3 |
| MS.gene074096.t1 | MTR_7g063360 | 26.667 | 270 | 183 | 8 | 1 | 261 | 1 | 264 | 1.75e-12 | 66.2 |
| MS.gene074096.t1 | MTR_4g134660 | 25.243 | 206 | 149 | 5 | 10 | 212 | 3 | 206 | 8.50e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074096.t1 | AT2G47140 | 49.802 | 253 | 125 | 2 | 9 | 261 | 2 | 252 | 2.39e-81 | 245 |
| MS.gene074096.t1 | AT2G47130 | 48.828 | 256 | 122 | 4 | 9 | 261 | 2 | 251 | 2.57e-76 | 233 |
| MS.gene074096.t1 | AT3G29260 | 50.198 | 253 | 123 | 3 | 9 | 261 | 2 | 251 | 2.26e-75 | 230 |
| MS.gene074096.t1 | AT2G47120 | 47.036 | 253 | 130 | 4 | 9 | 261 | 2 | 250 | 1.01e-73 | 226 |
| MS.gene074096.t1 | AT3G29250 | 46.304 | 257 | 136 | 2 | 5 | 261 | 34 | 288 | 1.72e-72 | 224 |
| MS.gene074096.t1 | AT3G29250 | 46.640 | 253 | 133 | 2 | 9 | 261 | 2 | 252 | 2.13e-72 | 223 |
| MS.gene074096.t1 | AT2G47120 | 46.800 | 250 | 129 | 4 | 12 | 261 | 6 | 251 | 4.01e-72 | 222 |
| MS.gene074096.t1 | AT3G29250 | 45.946 | 259 | 136 | 3 | 5 | 261 | 34 | 290 | 1.47e-70 | 219 |
| MS.gene074096.t1 | AT3G51680 | 42.599 | 277 | 137 | 5 | 1 | 259 | 20 | 292 | 7.66e-61 | 194 |
| MS.gene074096.t1 | AT3G26760 | 40.840 | 262 | 144 | 6 | 12 | 265 | 35 | 293 | 1.11e-58 | 189 |
| MS.gene074096.t1 | AT3G26770 | 38.911 | 257 | 142 | 6 | 12 | 259 | 40 | 290 | 3.36e-54 | 177 |
| MS.gene074096.t1 | AT1G52340 | 40.000 | 260 | 144 | 5 | 12 | 261 | 17 | 274 | 6.24e-51 | 169 |
| MS.gene074096.t1 | AT4G03140 | 38.039 | 255 | 150 | 4 | 12 | 261 | 77 | 328 | 1.10e-50 | 169 |
| MS.gene074096.t1 | AT3G42960 | 40.304 | 263 | 143 | 6 | 8 | 261 | 3 | 260 | 1.38e-49 | 165 |
| MS.gene074096.t1 | AT5G18210 | 32.946 | 258 | 160 | 5 | 13 | 262 | 8 | 260 | 2.62e-29 | 112 |
| MS.gene074096.t1 | AT2G47150 | 33.865 | 251 | 107 | 9 | 13 | 261 | 1 | 194 | 1.21e-27 | 105 |
| MS.gene074096.t1 | AT5G18210 | 34.583 | 240 | 144 | 5 | 13 | 244 | 8 | 242 | 5.43e-27 | 106 |
| MS.gene074096.t1 | AT3G03980 | 31.502 | 273 | 166 | 6 | 4 | 262 | 5 | 270 | 1.23e-26 | 105 |
| MS.gene074096.t1 | AT3G04000 | 32.601 | 273 | 165 | 6 | 1 | 259 | 1 | 268 | 1.27e-26 | 105 |
| MS.gene074096.t1 | AT1G54870 | 34.000 | 200 | 120 | 4 | 12 | 203 | 83 | 278 | 1.47e-26 | 106 |
| MS.gene074096.t1 | AT1G54870 | 34.000 | 200 | 120 | 4 | 12 | 203 | 81 | 276 | 1.49e-26 | 106 |
| MS.gene074096.t1 | AT3G05260 | 34.434 | 212 | 124 | 5 | 2 | 203 | 24 | 230 | 2.12e-26 | 104 |
| MS.gene074096.t1 | AT4G13180 | 26.882 | 279 | 170 | 8 | 1 | 262 | 1 | 262 | 9.43e-22 | 91.7 |
| MS.gene074096.t1 | AT4G05530 | 31.727 | 249 | 161 | 6 | 12 | 259 | 8 | 248 | 1.55e-21 | 90.9 |
| MS.gene074096.t1 | AT1G24360 | 26.848 | 257 | 165 | 7 | 12 | 259 | 73 | 315 | 2.05e-19 | 86.3 |
| MS.gene074096.t1 | AT1G63380 | 27.413 | 259 | 166 | 9 | 13 | 258 | 15 | 264 | 5.40e-19 | 84.7 |
| MS.gene074096.t1 | AT1G63380 | 27.413 | 259 | 166 | 9 | 13 | 258 | 17 | 266 | 5.84e-19 | 84.7 |
| MS.gene074096.t1 | AT1G63380 | 27.413 | 259 | 166 | 9 | 13 | 258 | 19 | 268 | 6.65e-19 | 84.3 |
| MS.gene074096.t1 | AT1G63380 | 27.413 | 259 | 166 | 9 | 13 | 258 | 22 | 271 | 8.30e-19 | 84.3 |
| MS.gene074096.t1 | AT1G62610 | 27.016 | 248 | 169 | 7 | 13 | 252 | 13 | 256 | 3.82e-18 | 82.4 |
| MS.gene074096.t1 | AT1G62610 | 27.165 | 254 | 173 | 7 | 13 | 258 | 19 | 268 | 3.90e-18 | 82.4 |
| MS.gene074096.t1 | AT1G62610 | 27.016 | 248 | 169 | 7 | 13 | 252 | 14 | 257 | 3.91e-18 | 82.4 |
| MS.gene074096.t1 | AT1G62610 | 27.016 | 248 | 169 | 7 | 13 | 252 | 15 | 258 | 3.96e-18 | 82.4 |
| MS.gene074096.t1 | AT3G46170 | 25.483 | 259 | 172 | 7 | 12 | 258 | 25 | 274 | 1.64e-17 | 80.5 |
| MS.gene074096.t1 | AT5G06060 | 27.536 | 276 | 154 | 8 | 7 | 261 | 3 | 253 | 1.10e-16 | 78.2 |
| MS.gene074096.t1 | AT2G29340 | 28.063 | 253 | 166 | 7 | 13 | 259 | 7 | 249 | 5.49e-16 | 75.9 |
| MS.gene074096.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 5.80e-16 | 76.6 |
| MS.gene074096.t1 | AT3G47350 | 25.381 | 197 | 135 | 5 | 13 | 204 | 44 | 233 | 8.50e-16 | 76.3 |
| MS.gene074096.t1 | AT2G29340 | 28.063 | 253 | 166 | 7 | 13 | 259 | 7 | 249 | 9.55e-16 | 75.9 |
| MS.gene074096.t1 | AT2G29150 | 30.189 | 265 | 164 | 10 | 3 | 259 | 6 | 257 | 1.13e-15 | 75.1 |
| MS.gene074096.t1 | AT3G55310 | 25.769 | 260 | 168 | 8 | 13 | 258 | 17 | 265 | 1.41e-15 | 75.1 |
| MS.gene074096.t1 | AT3G55290 | 25.194 | 258 | 172 | 7 | 13 | 258 | 17 | 265 | 2.08e-15 | 74.7 |
| MS.gene074096.t1 | AT3G55290 | 25.194 | 258 | 172 | 7 | 13 | 258 | 18 | 266 | 2.21e-15 | 74.7 |
| MS.gene074096.t1 | AT3G47360 | 28.643 | 199 | 126 | 8 | 13 | 204 | 45 | 234 | 3.78e-15 | 74.3 |
| MS.gene074096.t1 | AT2G29370 | 27.519 | 258 | 179 | 6 | 13 | 268 | 16 | 267 | 4.44e-15 | 73.6 |
| MS.gene074096.t1 | AT5G50770 | 30.481 | 187 | 122 | 5 | 13 | 196 | 45 | 226 | 5.81e-15 | 73.9 |
| MS.gene074096.t1 | AT2G30670 | 25.984 | 254 | 170 | 7 | 13 | 259 | 7 | 249 | 8.73e-15 | 72.8 |
| MS.gene074096.t1 | AT5G50690 | 28.333 | 180 | 114 | 6 | 12 | 184 | 44 | 215 | 8.77e-15 | 72.4 |
| MS.gene074096.t1 | AT5G50590 | 28.333 | 180 | 114 | 6 | 12 | 184 | 44 | 215 | 8.77e-15 | 72.4 |
| MS.gene074096.t1 | AT2G29360 | 27.586 | 261 | 175 | 8 | 13 | 268 | 16 | 267 | 9.35e-15 | 72.8 |
| MS.gene074096.t1 | AT2G29310 | 26.866 | 268 | 164 | 10 | 13 | 266 | 7 | 256 | 1.21e-14 | 72.4 |
| MS.gene074096.t1 | AT5G50690 | 29.189 | 185 | 106 | 5 | 12 | 184 | 44 | 215 | 1.52e-14 | 72.4 |
| MS.gene074096.t1 | AT5G50590 | 29.189 | 185 | 106 | 5 | 12 | 184 | 44 | 215 | 1.52e-14 | 72.4 |
| MS.gene074096.t1 | AT2G29260 | 28.346 | 254 | 164 | 8 | 13 | 259 | 68 | 310 | 1.72e-14 | 72.4 |
| MS.gene074096.t1 | AT5G50600 | 24.742 | 194 | 140 | 4 | 13 | 204 | 45 | 234 | 3.85e-14 | 71.6 |
| MS.gene074096.t1 | AT5G50700 | 24.742 | 194 | 140 | 4 | 13 | 204 | 45 | 234 | 3.85e-14 | 71.6 |
| MS.gene074096.t1 | AT2G29300 | 29.213 | 267 | 157 | 12 | 13 | 264 | 7 | 256 | 4.19e-14 | 70.9 |
| MS.gene074096.t1 | AT2G29300 | 28.679 | 265 | 158 | 11 | 13 | 263 | 7 | 254 | 4.28e-14 | 70.9 |
| MS.gene074096.t1 | AT4G10020 | 28.652 | 178 | 108 | 6 | 16 | 184 | 50 | 217 | 1.93e-13 | 70.1 |
| MS.gene074096.t1 | AT2G29340 | 28.713 | 202 | 131 | 6 | 13 | 208 | 7 | 201 | 2.08e-13 | 67.8 |
| MS.gene074096.t1 | AT2G29340 | 28.713 | 202 | 131 | 6 | 13 | 208 | 7 | 201 | 2.08e-13 | 67.8 |
| MS.gene074096.t1 | AT2G29320 | 28.352 | 261 | 156 | 11 | 13 | 259 | 13 | 256 | 2.99e-13 | 68.6 |
| MS.gene074096.t1 | AT2G17845 | 26.437 | 261 | 168 | 9 | 13 | 258 | 47 | 298 | 6.06e-13 | 68.2 |
| MS.gene074096.t1 | AT1G07450 | 28.077 | 260 | 168 | 11 | 9 | 261 | 4 | 251 | 1.75e-12 | 66.2 |
| MS.gene074096.t1 | AT2G29290 | 27.200 | 250 | 172 | 6 | 13 | 259 | 7 | 249 | 1.83e-12 | 66.2 |
| MS.gene074096.t1 | AT2G29310 | 28.571 | 210 | 121 | 8 | 13 | 208 | 7 | 201 | 3.84e-12 | 64.3 |
| MS.gene074096.t1 | AT1G07440 | 27.668 | 253 | 166 | 7 | 13 | 259 | 12 | 253 | 2.03e-11 | 63.2 |
| MS.gene074096.t1 | AT2G29350 | 28.856 | 201 | 134 | 6 | 8 | 204 | 10 | 205 | 2.49e-11 | 62.4 |
| MS.gene074096.t1 | AT3G47350 | 30.189 | 106 | 68 | 2 | 13 | 116 | 44 | 145 | 3.95e-11 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCTGATCAGACTATTT+TGG | 0.219303 | 6.1:-7060735 | MS.gene074096:CDS |
| ATATCGAAGCATGCAATAAT+AGG | 0.242360 | 6.1:-7060542 | MS.gene074096:CDS |
| CCATTGACTATGAGATTGTT+AGG | 0.292303 | 6.1:-7060440 | MS.gene074096:CDS |
| CATCTACTAACAATGGTCTT+AGG | 0.292454 | 6.1:-7061687 | MS.gene074096:CDS |
| GTGGATGGCAGCTATGTTTA+TGG | 0.299988 | 6.1:-7060275 | MS.gene074096:CDS |
| GGCAGATGCTGTGTTGTTCT+TGG | 0.317529 | 6.1:-7060339 | MS.gene074096:CDS |
| CAATCAACGGTCAATGCTTA+TGG | 0.322095 | 6.1:-7061454 | MS.gene074096:CDS |
| CTGCATCCATTGGCGGCAAC+AGG | 0.359068 | 6.1:-7061531 | MS.gene074096:CDS |
| GATATTATGTTTAGCAATGC+TGG | 0.362324 | 6.1:-7060767 | MS.gene074096:CDS |
| GCCAATGCCACTGGCACCTC+CGG | 0.395916 | 6.1:+7061639 | None:intergenic |
| AACTTGCAAAATACGGGATA+AGG | 0.405544 | 6.1:-7060496 | MS.gene074096:CDS |
| CGTCTCTTTGCCAATGCCAC+TGG | 0.416288 | 6.1:+7061630 | None:intergenic |
| AATGGTGTTGCTAATCCATT+TGG | 0.430166 | 6.1:+7060458 | None:intergenic |
| CACCATGCGTGCACCTTGAT+CGG | 0.442941 | 6.1:+7061594 | None:intergenic |
| ACCGGAGGTGCCAGTGGCAT+TGG | 0.446047 | 6.1:-7061640 | MS.gene074096:CDS |
| CAATGGTGGAGGGGCACGTG+AGG | 0.446854 | 6.1:-7060631 | MS.gene074096:CDS |
| TATCGAAGCATGCAATAATA+GGG | 0.448557 | 6.1:-7060541 | MS.gene074096:CDS |
| GTGAATTGTGTCTCGCCAAA+TGG | 0.451124 | 6.1:-7060473 | MS.gene074096:CDS |
| AGTGTGCAACTTGCAAAATA+CGG | 0.458623 | 6.1:-7060503 | MS.gene074096:CDS |
| AATCGAGTGGCTGCATCCAT+TGG | 0.459458 | 6.1:-7061541 | MS.gene074096:CDS |
| CGCAGCGCGTGCAATGGTGG+AGG | 0.464320 | 6.1:-7060642 | MS.gene074096:CDS |
| GTGTGCACAGCGAGCGTCCT+GGG | 0.473161 | 6.1:-7060599 | MS.gene074096:CDS |
| GCGCATCTCTTTGCCGATCA+AGG | 0.473582 | 6.1:-7061607 | MS.gene074096:CDS |
| ACTTGCAAAATACGGGATAA+GGG | 0.476659 | 6.1:-7060495 | MS.gene074096:CDS |
| GGCCTTGATCTTCGTGTGGA+TGG | 0.478190 | 6.1:-7060290 | MS.gene074096:CDS |
| TTGTTTGCAGTTAACATTCG+AGG | 0.480174 | 6.1:-7060686 | MS.gene074096:CDS |
| GCTGACATTCAAGACGAGTT+GGG | 0.480846 | 6.1:-7061565 | MS.gene074096:CDS |
| CATTGACTATGAGATTGTTA+GGG | 0.487258 | 6.1:-7060439 | MS.gene074096:CDS |
| TGCTGACATTCAAGACGAGT+TGG | 0.487544 | 6.1:-7061566 | MS.gene074096:CDS |
| GGTGACGATGGCTACTTTGC+CGG | 0.490347 | 6.1:+7061660 | None:intergenic |
| TGTGTGCACAGCGAGCGTCC+TGG | 0.491477 | 6.1:-7060600 | MS.gene074096:CDS |
| GGTGCTCCTGTTGCCGCCAA+TGG | 0.495505 | 6.1:+7061525 | None:intergenic |
| GAATGTTAACTGCAAACAAA+TGG | 0.501473 | 6.1:+7060690 | None:intergenic |
| AACAATGGTCTTAGGTTAGC+CGG | 0.516122 | 6.1:-7061679 | MS.gene074096:CDS |
| TTATGAACAAAACAAGAGGT+TGG | 0.516866 | 6.1:-7060390 | MS.gene074096:CDS |
| CCTAACAATCTCATAGTCAA+TGG | 0.517810 | 6.1:+7060440 | None:intergenic |
| ATATTATGTTTAGCAATGCT+GGG | 0.517928 | 6.1:-7060766 | MS.gene074096:CDS |
| AACGGTCAATGCTTATGGAC+AGG | 0.524985 | 6.1:-7061449 | MS.gene074096:intron |
| AATGGTGGAGGGGCACGTGA+GGG | 0.527778 | 6.1:-7060630 | MS.gene074096:CDS |
| ATGGTGGAGGGGCACGTGAG+GGG | 0.528282 | 6.1:-7060629 | MS.gene074096:CDS |
| TCCAAAATAGTCTGATCAGA+TGG | 0.534810 | 6.1:+7060734 | None:intergenic |
| GGCAAAGTAGCCATCGTCAC+CGG | 0.538495 | 6.1:-7061658 | MS.gene074096:CDS |
| GCAGCGCGTGCAATGGTGGA+GGG | 0.539737 | 6.1:-7060641 | MS.gene074096:CDS |
| GTGTGCAACTTGCAAAATAC+GGG | 0.541723 | 6.1:-7060502 | MS.gene074096:CDS |
| AAACAAGAGGTTGGAAGGAG+TGG | 0.542973 | 6.1:-7060381 | MS.gene074096:CDS |
| TGCCGATCAAGGTGCACGCA+TGG | 0.543365 | 6.1:-7061596 | MS.gene074096:CDS |
| CGAGTGGCTGCATCCATTGG+CGG | 0.543859 | 6.1:-7061538 | MS.gene074096:CDS |
| TGCCATCCACACGAAGATCA+AGG | 0.546878 | 6.1:+7060288 | None:intergenic |
| AGTGAATCTGACTTTGTCAC+TGG | 0.549507 | 6.1:-7060311 | MS.gene074096:CDS |
| GAACAAAACAAGAGGTTGGA+AGG | 0.555611 | 6.1:-7060386 | MS.gene074096:CDS |
| GAAATACGCAGCGCGTGCAA+TGG | 0.556343 | 6.1:-7060648 | MS.gene074096:CDS |
| CACTGGCCTTGATCTTCGTG+TGG | 0.560496 | 6.1:-7060294 | MS.gene074096:CDS |
| CAGTGGCATTGGCAAAGAGA+CGG | 0.560685 | 6.1:-7061629 | MS.gene074096:CDS |
| ACTGGCACCTCCGGTGACGA+TGG | 0.561243 | 6.1:+7061648 | None:intergenic |
| ATCGTCACCGGAGGTGCCAG+TGG | 0.562053 | 6.1:-7061646 | MS.gene074096:CDS |
| ATACGCAGCGCGTGCAATGG+TGG | 0.568872 | 6.1:-7060645 | MS.gene074096:CDS |
| TCAAGACACCTTCGCTACCC+AGG | 0.581633 | 6.1:+7060582 | None:intergenic |
| GCGAGCGTCCTGGGTAGCGA+AGG | 0.582173 | 6.1:-7060590 | MS.gene074096:CDS |
| TGCTATGTCACAATGGATGA+AGG | 0.590504 | 6.1:+7061504 | None:intergenic |
| CAGCGCGTGCAATGGTGGAG+GGG | 0.604964 | 6.1:-7060640 | MS.gene074096:CDS |
| GAAGCTTCATCTACTAACAA+TGG | 0.610588 | 6.1:-7061694 | MS.gene074096:CDS |
| AGACGAGTTGGGCAATCGAG+TGG | 0.629056 | 6.1:-7061554 | MS.gene074096:CDS |
| TGATTTATGAACAAAACAAG+AGG | 0.629161 | 6.1:-7060394 | MS.gene074096:CDS |
| GTTAACTGCAAACAAATGGT+CGG | 0.630397 | 6.1:+7060694 | None:intergenic |
| CTTCATTTGCTATGTCACAA+TGG | 0.633784 | 6.1:+7061497 | None:intergenic |
| AAAGTAGCCATCGTCACCGG+AGG | 0.651370 | 6.1:-7061655 | MS.gene074096:CDS |
| ATTGACTATGAGATTGTTAG+GGG | 0.661906 | 6.1:-7060438 | MS.gene074096:CDS |
| TGGGTAGCGAAGGTGTCTTG+AGG | 0.664401 | 6.1:-7060580 | MS.gene074096:CDS |
| CGATCAAGGTGCACGCATGG+TGG | 0.678300 | 6.1:-7061593 | MS.gene074096:CDS |
| GGTTCTTAACACTAAACATG+TGG | 0.680290 | 6.1:-7060360 | MS.gene074096:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAATTTTTTTTTATA+GGG | - | chr6.1:7060998-7061017 | MS.gene074096:intron | 0.0% |
| !!! | TAAATTAAATTTTTTTTTAT+AGG | - | chr6.1:7060997-7061016 | MS.gene074096:intron | 0.0% |
| !! | ACATTATAATGTAGAAATTA+TGG | + | chr6.1:7060846-7060865 | None:intergenic | 15.0% |
| !! | AGGTAAAATAAAAATTAACT+AGG | - | chr6.1:7060527-7060546 | MS.gene074096:CDS | 15.0% |
| !! | GGTAAAATAAAAATTAACTA+GGG | - | chr6.1:7060528-7060547 | MS.gene074096:CDS | 15.0% |
| !!! | AAAGAAAAAGTTGTTTTTTA+GGG | + | chr6.1:7061152-7061171 | None:intergenic | 15.0% |
| !!! | ATAAAGTCTTATATAGTAAA+TGG | + | chr6.1:7061043-7061062 | None:intergenic | 15.0% |
| !!! | TAAAGTCTTATATAGTAAAT+GGG | + | chr6.1:7061042-7061061 | None:intergenic | 15.0% |
| !! | AAAAAATCTCATTCAATCAA+CGG | - | chr6.1:7060489-7060508 | MS.gene074096:CDS | 20.0% |
| !!! | AAAGTCTTATATAGTAAATG+GGG | + | chr6.1:7061041-7061060 | None:intergenic | 20.0% |
| !!! | GAAAGAAAAAGTTGTTTTTT+AGG | + | chr6.1:7061153-7061172 | None:intergenic | 20.0% |
| !!! | TGAAGAATTTGAAGTTTTTT+GGG | + | chr6.1:7060696-7060715 | None:intergenic | 20.0% |
| !!! | TTGAAGAATTTGAAGTTTTT+TGG | + | chr6.1:7060697-7060716 | None:intergenic | 20.0% |
| ! | ATATTATGTTTAGCAATGCT+GGG | - | chr6.1:7061190-7061209 | MS.gene074096:intron | 25.0% |
| ! | CAAAATTTCATAATACACGT+AGG | + | chr6.1:7060572-7060591 | None:intergenic | 25.0% |
| ! | TGATTTATGAACAAAACAAG+AGG | - | chr6.1:7061562-7061581 | MS.gene074096:CDS | 25.0% |
| !!! | GTGAATGAACTTGTTATAAT+GGG | + | chr6.1:7060748-7060767 | None:intergenic | 25.0% |
| !!! | TGTGAATGAACTTGTTATAA+TGG | + | chr6.1:7060749-7060768 | None:intergenic | 25.0% |
| AACATAATATCTACCTGTTG+TGG | + | chr6.1:7061180-7061199 | None:intergenic | 30.0% | |
| ATATCGAAGCATGCAATAAT+AGG | - | chr6.1:7061414-7061433 | MS.gene074096:intron | 30.0% | |
| ATTGACTATGAGATTGTTAG+GGG | - | chr6.1:7061518-7061537 | MS.gene074096:CDS | 30.0% | |
| GAATGTTAACTGCAAACAAA+TGG | + | chr6.1:7061269-7061288 | None:intergenic | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | - | chr6.1:7061189-7061208 | MS.gene074096:intron | 30.0% | |
| TATCGAAGCATGCAATAATA+GGG | - | chr6.1:7061415-7061434 | MS.gene074096:intron | 30.0% | |
| TTATGAACAAAACAAGAGGT+TGG | - | chr6.1:7061566-7061585 | MS.gene074096:CDS | 30.0% | |
| ! | CATTGACTATGAGATTGTTA+GGG | - | chr6.1:7061517-7061536 | MS.gene074096:CDS | 30.0% |
| ! | TTTTCTTTCTTTTCCACAAC+AGG | - | chr6.1:7061164-7061183 | MS.gene074096:intron | 30.0% |
| AACTTGCAAAATACGGGATA+AGG | - | chr6.1:7061460-7061479 | MS.gene074096:CDS | 35.0% | |
| ACTTGCAAAATACGGGATAA+GGG | - | chr6.1:7061461-7061480 | MS.gene074096:CDS | 35.0% | |
| AGTGTGCAACTTGCAAAATA+CGG | - | chr6.1:7061453-7061472 | MS.gene074096:CDS | 35.0% | |
| CATCTACTAACAATGGTCTT+AGG | - | chr6.1:7060269-7060288 | MS.gene074096:CDS | 35.0% | |
| CCTAACAATCTCATAGTCAA+TGG | + | chr6.1:7061519-7061538 | None:intergenic | 35.0% | |
| GAAGCTTCATCTACTAACAA+TGG | - | chr6.1:7060262-7060281 | MS.gene074096:CDS | 35.0% | |
| GGTTCTTAACACTAAACATG+TGG | - | chr6.1:7061596-7061615 | MS.gene074096:CDS | 35.0% | |
| GTTAACTGCAAACAAATGGT+CGG | + | chr6.1:7061265-7061284 | None:intergenic | 35.0% | |
| TAACTTTAATCAGTCTCTGC+TGG | + | chr6.1:7060915-7060934 | None:intergenic | 35.0% | |
| TCCAAAATAGTCTGATCAGA+TGG | + | chr6.1:7061225-7061244 | None:intergenic | 35.0% | |
| TTGTTTGCAGTTAACATTCG+AGG | - | chr6.1:7061270-7061289 | MS.gene074096:intron | 35.0% | |
| ! | CCATTGACTATGAGATTGTT+AGG | - | chr6.1:7061516-7061535 | MS.gene074096:CDS | 35.0% |
| ! | TCCATCTGATCAGACTATTT+TGG | - | chr6.1:7061221-7061240 | MS.gene074096:intron | 35.0% |
| !! | AATGGTGTTGCTAATCCATT+TGG | + | chr6.1:7061501-7061520 | None:intergenic | 35.0% |
| !! | CTTCATTTGCTATGTCACAA+TGG | + | chr6.1:7060462-7060481 | None:intergenic | 35.0% |
| AGTGAATCTGACTTTGTCAC+TGG | - | chr6.1:7061645-7061664 | MS.gene074096:CDS | 40.0% | |
| CAATCAACGGTCAATGCTTA+TGG | - | chr6.1:7060502-7060521 | MS.gene074096:CDS | 40.0% | |
| GAACAAAACAAGAGGTTGGA+AGG | - | chr6.1:7061570-7061589 | MS.gene074096:CDS | 40.0% | |
| GTGTGCAACTTGCAAAATAC+GGG | - | chr6.1:7061454-7061473 | MS.gene074096:CDS | 40.0% | |
| TGCTATGTCACAATGGATGA+AGG | + | chr6.1:7060455-7060474 | None:intergenic | 40.0% | |
| ! | AACAATGGTCTTAGGTTAGC+CGG | - | chr6.1:7060277-7060296 | MS.gene074096:CDS | 40.0% |
| AAACAAGAGGTTGGAAGGAG+TGG | - | chr6.1:7061575-7061594 | MS.gene074096:CDS | 45.0% | |
| AACGGTCAATGCTTATGGAC+AGG | - | chr6.1:7060507-7060526 | MS.gene074096:CDS | 45.0% | |
| GCTGACATTCAAGACGAGTT+GGG | - | chr6.1:7060391-7060410 | MS.gene074096:CDS | 45.0% | |
| GTGAATTGTGTCTCGCCAAA+TGG | - | chr6.1:7061483-7061502 | MS.gene074096:CDS | 45.0% | |
| GTGGATGGCAGCTATGTTTA+TGG | - | chr6.1:7061681-7061700 | MS.gene074096:CDS | 45.0% | |
| TGCTGACATTCAAGACGAGT+TGG | - | chr6.1:7060390-7060409 | MS.gene074096:CDS | 45.0% | |
| AATCGAGTGGCTGCATCCAT+TGG | - | chr6.1:7060415-7060434 | MS.gene074096:CDS | 50.0% | |
| TGCCATCCACACGAAGATCA+AGG | + | chr6.1:7061671-7061690 | None:intergenic | 50.0% | |
| ! | GGCAGATGCTGTGTTGTTCT+TGG | - | chr6.1:7061617-7061636 | MS.gene074096:CDS | 50.0% |
| !! | CAGTGGCATTGGCAAAGAGA+CGG | - | chr6.1:7060327-7060346 | MS.gene074096:CDS | 50.0% |
| AAAGTAGCCATCGTCACCGG+AGG | - | chr6.1:7060301-7060320 | MS.gene074096:CDS | 55.0% | |
| CACCATGCGTGCACCTTGAT+CGG | + | chr6.1:7060365-7060384 | None:intergenic | 55.0% | |
| CGTCTCTTTGCCAATGCCAC+TGG | + | chr6.1:7060329-7060348 | None:intergenic | 55.0% | |
| GAAATACGCAGCGCGTGCAA+TGG | - | chr6.1:7061308-7061327 | MS.gene074096:intron | 55.0% | |
| GCGCATCTCTTTGCCGATCA+AGG | - | chr6.1:7060349-7060368 | MS.gene074096:CDS | 55.0% | |
| GGCAAAGTAGCCATCGTCAC+CGG | - | chr6.1:7060298-7060317 | MS.gene074096:CDS | 55.0% | |
| GGCCTTGATCTTCGTGTGGA+TGG | - | chr6.1:7061666-7061685 | MS.gene074096:CDS | 55.0% | |
| TCAAGACACCTTCGCTACCC+AGG | + | chr6.1:7061377-7061396 | None:intergenic | 55.0% | |
| ! | AGACGAGTTGGGCAATCGAG+TGG | - | chr6.1:7060402-7060421 | MS.gene074096:CDS | 55.0% |
| ! | GGTGACGATGGCTACTTTGC+CGG | + | chr6.1:7060299-7060318 | None:intergenic | 55.0% |
| !! | CACTGGCCTTGATCTTCGTG+TGG | - | chr6.1:7061662-7061681 | MS.gene074096:CDS | 55.0% |
| !! | TGGGTAGCGAAGGTGTCTTG+AGG | - | chr6.1:7061376-7061395 | MS.gene074096:intron | 55.0% |
| ATACGCAGCGCGTGCAATGG+TGG | - | chr6.1:7061311-7061330 | MS.gene074096:intron | 60.0% | |
| CGAGTGGCTGCATCCATTGG+CGG | - | chr6.1:7060418-7060437 | MS.gene074096:CDS | 60.0% | |
| CGATCAAGGTGCACGCATGG+TGG | - | chr6.1:7060363-7060382 | MS.gene074096:CDS | 60.0% | |
| CTGCATCCATTGGCGGCAAC+AGG | - | chr6.1:7060425-7060444 | MS.gene074096:CDS | 60.0% | |
| TGCCGATCAAGGTGCACGCA+TGG | - | chr6.1:7060360-7060379 | MS.gene074096:CDS | 60.0% | |
| ! | AATGGTGGAGGGGCACGTGA+GGG | - | chr6.1:7061326-7061345 | MS.gene074096:intron | 60.0% |
| ACTGGCACCTCCGGTGACGA+TGG | + | chr6.1:7060311-7060330 | None:intergenic | 65.0% | |
| GCCAATGCCACTGGCACCTC+CGG | + | chr6.1:7060320-7060339 | None:intergenic | 65.0% | |
| GGTGCTCCTGTTGCCGCCAA+TGG | + | chr6.1:7060434-7060453 | None:intergenic | 65.0% | |
| GTGTGCACAGCGAGCGTCCT+GGG | - | chr6.1:7061357-7061376 | MS.gene074096:intron | 65.0% | |
| TGTGTGCACAGCGAGCGTCC+TGG | - | chr6.1:7061356-7061375 | MS.gene074096:intron | 65.0% | |
| ! | ATGGTGGAGGGGCACGTGAG+GGG | - | chr6.1:7061327-7061346 | MS.gene074096:intron | 65.0% |
| ! | CAATGGTGGAGGGGCACGTG+AGG | - | chr6.1:7061325-7061344 | MS.gene074096:intron | 65.0% |
| ! | CAGCGCGTGCAATGGTGGAG+GGG | - | chr6.1:7061316-7061335 | MS.gene074096:intron | 65.0% |
| ! | GCAGCGCGTGCAATGGTGGA+GGG | - | chr6.1:7061315-7061334 | MS.gene074096:intron | 65.0% |
| !! | ACCGGAGGTGCCAGTGGCAT+TGG | - | chr6.1:7060316-7060335 | MS.gene074096:CDS | 65.0% |
| !! | ATCGTCACCGGAGGTGCCAG+TGG | - | chr6.1:7060310-7060329 | MS.gene074096:CDS | 65.0% |
| CGCAGCGCGTGCAATGGTGG+AGG | - | chr6.1:7061314-7061333 | MS.gene074096:intron | 70.0% | |
| GCGAGCGTCCTGGGTAGCGA+AGG | - | chr6.1:7061366-7061385 | MS.gene074096:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 7060256 | 7061722 | 7060256 | ID=MS.gene074096 |
| chr6.1 | mRNA | 7060256 | 7061722 | 7060256 | ID=MS.gene074096.t1;Parent=MS.gene074096 |
| chr6.1 | exon | 7061450 | 7061722 | 7061450 | ID=MS.gene074096.t1.exon1;Parent=MS.gene074096.t1 |
| chr6.1 | CDS | 7061450 | 7061722 | 7061450 | ID=cds.MS.gene074096.t1;Parent=MS.gene074096.t1 |
| chr6.1 | exon | 7060256 | 7060792 | 7060256 | ID=MS.gene074096.t1.exon2;Parent=MS.gene074096.t1 |
| chr6.1 | CDS | 7060256 | 7060792 | 7060256 | ID=cds.MS.gene074096.t1;Parent=MS.gene074096.t1 |
| Gene Sequence |
| Protein sequence |
