Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074262.t1 | XP_013443288.1 | 100 | 105 | 0 | 0 | 2 | 106 | 8 | 112 | 4.20E-54 | 220.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074262.t1 | O49884 | 97.1 | 105 | 3 | 0 | 2 | 106 | 8 | 112 | 2.5e-55 | 215.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074262.t1 | A0A072TK88 | 100.0 | 105 | 0 | 0 | 2 | 106 | 8 | 112 | 3.0e-54 | 220.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050290 | MS.gene074262 | 0.874776 | 5.18E-68 | -1.69E-46 |
| MS.gene051903 | MS.gene074262 | 0.812482 | 4.15E-51 | -1.69E-46 |
| MS.gene052412 | MS.gene074262 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene074262 | 0.871993 | 4.47E-67 | -1.69E-46 |
| MS.gene057206 | MS.gene074262 | 0.81333 | 2.70E-51 | -1.69E-46 |
| MS.gene058364 | MS.gene074262 | 0.802977 | 4.34E-49 | -1.69E-46 |
| MS.gene060856 | MS.gene074262 | 0.8636 | 2.22E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074262 | MS.gene43173 | PPI |
| MS.gene074262 | MS.gene022106 | PPI |
| MS.gene97300 | MS.gene074262 | PPI |
| MS.gene074262 | MS.gene23883 | PPI |
| MS.gene022106 | MS.gene074262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074262.t1 | MTR_0024s0220 | 100.000 | 105 | 0 | 0 | 2 | 106 | 8 | 112 | 2.29e-74 | 216 |
| MS.gene074262.t1 | MTR_7g021030 | 98.095 | 105 | 2 | 0 | 2 | 106 | 8 | 112 | 3.26e-73 | 213 |
| MS.gene074262.t1 | MTR_5g088740 | 90.476 | 105 | 10 | 0 | 2 | 106 | 8 | 112 | 2.30e-68 | 200 |
| MS.gene074262.t1 | MTR_0024s0220 | 98.936 | 94 | 1 | 0 | 2 | 95 | 8 | 101 | 3.93e-65 | 192 |
| MS.gene074262.t1 | MTR_7g021030 | 93.056 | 72 | 5 | 0 | 2 | 73 | 8 | 79 | 2.63e-44 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074262.t1 | AT1G77940 | 87.619 | 105 | 13 | 0 | 2 | 106 | 8 | 112 | 1.02e-66 | 196 |
| MS.gene074262.t1 | AT3G18740 | 86.667 | 105 | 14 | 0 | 2 | 106 | 8 | 112 | 2.73e-66 | 195 |
| MS.gene074262.t1 | AT1G36240 | 85.714 | 105 | 15 | 0 | 2 | 106 | 8 | 112 | 1.03e-65 | 194 |
Find 25 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAGTGGGAAGTATACTT+TGG | 0.455456 | 6.2:-14210790 | MS.gene074262:CDS |
| TTGGAGTTCATCACTACAAC+GGG | 0.460582 | 6.2:-14208934 | MS.gene074262:CDS |
| AAGAGTGGGAAGTATACTTT+GGG | 0.468018 | 6.2:-14210789 | MS.gene074262:CDS |
| CAACAACTCTATTGGTCTCC+AGG | 0.486404 | 6.2:+14207373 | None:intergenic |
| GACATCATCAAGACCATACC+TGG | 0.503017 | 6.2:-14207391 | MS.gene074262:CDS |
| ACTCTATTGGTCTCCAGGTA+TGG | 0.504048 | 6.2:+14207378 | None:intergenic |
| TGTCTCAGCATTGTTGATCC+TGG | 0.506683 | 6.2:-14207507 | MS.gene074262:intron |
| GTCTGTTGTTAATAGACTCA+TGG | 0.514949 | 6.2:+14210826 | None:intergenic |
| TATGCTATGTTGGCGAAGGT+TGG | 0.517939 | 6.2:-14208953 | MS.gene074262:CDS |
| ATCTCGGACTTCCTCAATGG+TGG | 0.525281 | 6.2:+14208983 | None:intergenic |
| CTCGCTCTTGTGATGAAGAG+TGG | 0.527491 | 6.2:-14210804 | MS.gene074262:CDS |
| TCAATCTCGGACTTCCTCAA+TGG | 0.529674 | 6.2:+14208980 | None:intergenic |
| AAACTGTTCTCAAATCTCTC+AGG | 0.530584 | 6.2:-14210761 | MS.gene074262:CDS |
| GTGGACCTCGGCACTGCTTG+CGG | 0.537789 | 6.2:-14207549 | MS.gene074262:CDS |
| CTAACAATTGCCCACCATTG+AGG | 0.560937 | 6.2:-14208994 | MS.gene074262:CDS |
| TCGCTCTTGTGATGAAGAGT+GGG | 0.561153 | 6.2:-14210803 | MS.gene074262:CDS |
| CATAGCATAGTACTCAATCT+CGG | 0.571083 | 6.2:+14208967 | None:intergenic |
| GATTGAGTACTATGCTATGT+TGG | 0.583486 | 6.2:-14208963 | MS.gene074262:CDS |
| TCTGTTGTTAATAGACTCAT+GGG | 0.588441 | 6.2:+14210827 | None:intergenic |
| TCTCGGACTTCCTCAATGGT+GGG | 0.591390 | 6.2:+14208984 | None:intergenic |
| CTTATAGACAATGTGGACCT+CGG | 0.603044 | 6.2:-14207561 | MS.gene074262:intron |
| TTTCTTGCTTATAGACAATG+TGG | 0.618691 | 6.2:-14207568 | MS.gene074262:intron |
| GTACTATGCTATGTTGGCGA+AGG | 0.638030 | 6.2:-14208957 | MS.gene074262:CDS |
| AAATCTCTCAGGAACAACAA+AGG | 0.657253 | 6.2:-14210750 | MS.gene074262:intron |
| GTTGGAGTTCATCACTACAA+CGG | 0.670664 | 6.2:-14208935 | MS.gene074262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAGTGTTATAATAT+TGG | + | chr6.2:14209204-14209223 | None:intergenic | 10.0% |
| !!! | AAAAAAAGTGTTATAATATT+GGG | + | chr6.2:14209203-14209222 | None:intergenic | 10.0% |
| !!! | AAATTTTAAGAGATAAAAAT+AGG | + | chr6.2:14210279-14210298 | None:intergenic | 10.0% |
| !!! | TTTATAATTTTGTTTTGATT+CGG | - | chr6.2:14208961-14208980 | MS.gene074262:CDS | 10.0% |
| !!! | TTTTTATTTTATGAATACAT+TGG | - | chr6.2:14207863-14207882 | MS.gene074262:intron | 10.0% |
| !! | ATAAACACTAAATGATTAAT+GGG | - | chr6.2:14209475-14209494 | MS.gene074262:intron | 15.0% |
| !! | TATAAACACTAAATGATTAA+TGG | - | chr6.2:14209474-14209493 | MS.gene074262:intron | 15.0% |
| !! | TTACTTTCTCAATTTATTAA+TGG | - | chr6.2:14209853-14209872 | MS.gene074262:intron | 15.0% |
| !!! | ACTTTTTTTTTTAACTATTG+TGG | - | chr6.2:14209214-14209233 | MS.gene074262:intron | 15.0% |
| !!! | CTAAAAAAATTCGATTTTTT+TGG | - | chr6.2:14207744-14207763 | MS.gene074262:intron | 15.0% |
| !!! | TTATAATTTTGTTTTGATTC+GGG | - | chr6.2:14208962-14208981 | MS.gene074262:CDS | 15.0% |
| !!! | TTATTTTATATTCTGTTTTC+AGG | - | chr6.2:14210921-14210940 | MS.gene074262:intron | 15.0% |
| !!! | TTTTTTAAGAATCATTAGTT+TGG | - | chr6.2:14209059-14209078 | MS.gene074262:intron | 15.0% |
| !! | AAGTAAAATAACAACAACAA+AGG | + | chr6.2:14210717-14210736 | None:intergenic | 20.0% |
| !! | AATATTGTTTGTAACTATTG+TGG | - | chr6.2:14208580-14208599 | MS.gene074262:intron | 20.0% |
| !! | CAATAATTTCAAATCTAATC+GGG | + | chr6.2:14208473-14208492 | None:intergenic | 20.0% |
| !! | CCAATAATTTCAAATCTAAT+CGG | + | chr6.2:14208474-14208493 | None:intergenic | 20.0% |
| !! | TAGACTATTGTTAACTTAAA+CGG | - | chr6.2:14210078-14210097 | MS.gene074262:intron | 20.0% |
| !! | TCTGATTTATAGTATTTGTT+TGG | - | chr6.2:14207659-14207678 | MS.gene074262:intron | 20.0% |
| !!! | GAAATTGTTGATTAAATCAA+TGG | - | chr6.2:14209115-14209134 | MS.gene074262:intron | 20.0% |
| !!! | GTTAATTTGAGTTTTGTTTA+GGG | - | chr6.2:14207966-14207985 | MS.gene074262:intron | 20.0% |
| !!! | TGTTAATTTGAGTTTTGTTT+AGG | - | chr6.2:14207965-14207984 | MS.gene074262:intron | 20.0% |
| !!! | TTATTTTATGAATACATTGG+AGG | - | chr6.2:14207866-14207885 | MS.gene074262:intron | 20.0% |
| !!! | TTCACTTTTCTGTTAATTTT+TGG | - | chr6.2:14207450-14207469 | MS.gene074262:intron | 20.0% |
| !!! | TTCTTAAGAATGAAAGTTTT+TGG | - | chr6.2:14208833-14208852 | MS.gene074262:intron | 20.0% |
| !!! | TTTGACATTTTCATTGTTTT+CGG | + | chr6.2:14210370-14210389 | None:intergenic | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr6.2:14208169-14208188 | MS.gene074262:intron | 25.0% |
| ! | AATAGTGCATTATATCAAGT+GGG | + | chr6.2:14209663-14209682 | None:intergenic | 25.0% |
| ! | ATACAAAATCCAATGAATCT+TGG | + | chr6.2:14208397-14208416 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGGAGAAATG+TGG | - | chr6.2:14209125-14209144 | MS.gene074262:intron | 25.0% |
| ! | ATTGTTATCACAAAGTAAAC+AGG | + | chr6.2:14210255-14210274 | None:intergenic | 25.0% |
| ! | TAATAGTGCATTATATCAAG+TGG | + | chr6.2:14209664-14209683 | None:intergenic | 25.0% |
| ! | TACAAAATCCAATGAATCTT+GGG | + | chr6.2:14208396-14208415 | None:intergenic | 25.0% |
| ! | TTGTTATCACAAAGTAAACA+GGG | + | chr6.2:14210254-14210273 | None:intergenic | 25.0% |
| ! | TTTACTTACTATTTCACTCT+GGG | - | chr6.2:14210125-14210144 | MS.gene074262:intron | 25.0% |
| !! | AAATTATTGGTCTCTTTGAT+TGG | - | chr6.2:14208484-14208503 | MS.gene074262:intron | 25.0% |
| !! | AAGATTCATTGGATTTTGTA+TGG | - | chr6.2:14208396-14208415 | MS.gene074262:intron | 25.0% |
| !! | AATTATTGGTCTCTTTGATT+GGG | - | chr6.2:14208485-14208504 | MS.gene074262:intron | 25.0% |
| !! | AGATTTTTCGTTGCAATATT+AGG | - | chr6.2:14210228-14210247 | MS.gene074262:intron | 25.0% |
| !! | AGGAGTAAGTTTGTAATTTT+TGG | - | chr6.2:14208877-14208896 | MS.gene074262:intron | 25.0% |
| !! | CCGATTAGATTTGAAATTAT+TGG | - | chr6.2:14208471-14208490 | MS.gene074262:intron | 25.0% |
| !! | CTATTTTCCTACAACATTAA+GGG | + | chr6.2:14208196-14208215 | None:intergenic | 25.0% |
| !! | GGGAAGAATGAATTTAATTT+GGG | - | chr6.2:14208732-14208751 | MS.gene074262:intron | 25.0% |
| !! | GGTTTTTACAAAATTGAAGT+TGG | - | chr6.2:14208274-14208293 | MS.gene074262:intron | 25.0% |
| !! | GTAGGAAAATAGATTTTGTA+TGG | - | chr6.2:14208204-14208223 | MS.gene074262:intron | 25.0% |
| !! | TCATTGATTGATAGAGAAAT+GGG | - | chr6.2:14208308-14208327 | MS.gene074262:intron | 25.0% |
| !! | TCTAGCTCAATTGAATTAAT+GGG | - | chr6.2:14207686-14207705 | MS.gene074262:intron | 25.0% |
| !! | TCTATTTTCCTACAACATTA+AGG | + | chr6.2:14208197-14208216 | None:intergenic | 25.0% |
| !! | TTAGTTTGGTTTCGTAAATA+TGG | - | chr6.2:14209073-14209092 | MS.gene074262:intron | 25.0% |
| !! | TTTATGAATGTGTTTGGAAT+GGG | - | chr6.2:14208433-14208452 | MS.gene074262:intron | 25.0% |
| !! | TTTTACTTACTATTTCACTC+TGG | - | chr6.2:14210124-14210143 | MS.gene074262:intron | 25.0% |
| !!! | AACATTTTTCGATTTTATGC+AGG | - | chr6.2:14209308-14209327 | MS.gene074262:intron | 25.0% |
| !!! | ACATTTTTCGATTTTATGCA+GGG | - | chr6.2:14209309-14209328 | MS.gene074262:intron | 25.0% |
| !!! | AGTTTTTGGTTTGAGATTTA+TGG | - | chr6.2:14208847-14208866 | MS.gene074262:intron | 25.0% |
| !!! | ATTTGCTGTATACATTTTGT+TGG | - | chr6.2:14209617-14209636 | MS.gene074262:intron | 25.0% |
| !!! | GGAAATTTGATTTTGATTCT+GGG | - | chr6.2:14207471-14207490 | MS.gene074262:intron | 25.0% |
| !!! | GTTAGTTTAACTTGTTAACA+AGG | - | chr6.2:14210301-14210320 | MS.gene074262:intron | 25.0% |
| !!! | TATTTTTGACATGGGAAATA+TGG | - | chr6.2:14208253-14208272 | MS.gene074262:intron | 25.0% |
| !!! | TGGAAATTTGATTTTGATTC+TGG | - | chr6.2:14207470-14207489 | MS.gene074262:intron | 25.0% |
| !!! | TTATGGTTTTGTTTGGATTT+GGG | - | chr6.2:14207900-14207919 | MS.gene074262:intron | 25.0% |
| !!! | TTCTAGCTCAATTGAATTAA+TGG | - | chr6.2:14207685-14207704 | MS.gene074262:intron | 25.0% |
| !!! | TTGAGATTTATGGTTTTTTC+AGG | - | chr6.2:14208857-14208876 | MS.gene074262:intron | 25.0% |
| !!! | TTTATGGTTTTGTTTGGATT+TGG | - | chr6.2:14207899-14207918 | MS.gene074262:intron | 25.0% |
| !!! | TTTTTTAACTATTGTGGATG+TGG | - | chr6.2:14209220-14209239 | MS.gene074262:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr6.2:14208170-14208189 | MS.gene074262:intron | 30.0% | |
| AAACACATCAACACAAATTG+AGG | + | chr6.2:14210016-14210035 | None:intergenic | 30.0% | |
| AAAGTTAAGTCAATCCAAAC+AGG | + | chr6.2:14207992-14208011 | None:intergenic | 30.0% | |
| AAGCAATGTTCAATGTATTC+AGG | - | chr6.2:14208651-14208670 | MS.gene074262:intron | 30.0% | |
| AAGTTAACAATAGTCTAGCT+AGG | + | chr6.2:14210075-14210094 | None:intergenic | 30.0% | |
| AATATACAACATACAGCTCA+TGG | + | chr6.2:14209154-14209173 | None:intergenic | 30.0% | |
| AGACATAATGCACTTCTTAA+GGG | + | chr6.2:14210555-14210574 | None:intergenic | 30.0% | |
| ATAGTGCATTATATCAAGTG+GGG | + | chr6.2:14209662-14209681 | None:intergenic | 30.0% | |
| CACACATAACAAAATACTCA+TGG | + | chr6.2:14208522-14208541 | None:intergenic | 30.0% | |
| CTTTATGAATGTGTTTGGAA+TGG | - | chr6.2:14208432-14208451 | MS.gene074262:intron | 30.0% | |
| GACTTCTTTATGAATGTGTT+TGG | - | chr6.2:14208427-14208446 | MS.gene074262:intron | 30.0% | |
| GGGGAAGAATGAATTTAATT+TGG | - | chr6.2:14208731-14208750 | MS.gene074262:intron | 30.0% | |
| GTTCAATGTATTCAGGAAAA+TGG | - | chr6.2:14208658-14208677 | MS.gene074262:intron | 30.0% | |
| TAAATGTCAAATTCCTGATG+TGG | + | chr6.2:14210655-14210674 | None:intergenic | 30.0% | |
| TAGACATAATGCACTTCTTA+AGG | + | chr6.2:14210556-14210575 | None:intergenic | 30.0% | |
| TCTGTTGTTAATAGACTCAT+GGG | + | chr6.2:14207518-14207537 | None:intergenic | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | + | chr6.2:14208121-14208140 | None:intergenic | 30.0% | |
| TTGATATGTGTTGAAACAAC+AGG | + | chr6.2:14209732-14209751 | None:intergenic | 30.0% | |
| TTTCTTGCTTATAGACAATG+TGG | - | chr6.2:14210774-14210793 | MS.gene074262:CDS | 30.0% | |
| ! | AACGTTTTCACAAAGTAAAC+AGG | - | chr6.2:14210529-14210548 | MS.gene074262:intron | 30.0% |
| ! | AGAGATTGAAATGGATTTGT+AGG | - | chr6.2:14208544-14208563 | MS.gene074262:intron | 30.0% |
| ! | CAAAACTGTTGTGAACATTT+TGG | + | chr6.2:14210607-14210626 | None:intergenic | 30.0% |
| ! | GAGATTGAAATGGATTTGTA+GGG | - | chr6.2:14208545-14208564 | MS.gene074262:intron | 30.0% |
| ! | GATACGACTTCGATTTTAAA+AGG | + | chr6.2:14209766-14209785 | None:intergenic | 30.0% |
| ! | GTCATTGATTGATAGAGAAA+TGG | - | chr6.2:14208307-14208326 | MS.gene074262:intron | 30.0% |
| ! | TGTTGTATTGTTTGACTTTG+AGG | - | chr6.2:14208687-14208706 | MS.gene074262:intron | 30.0% |
| ! | TTTGATTCAAGTGTTGTGTT+CGG | - | chr6.2:14209564-14209583 | MS.gene074262:intron | 30.0% |
| !! | ACGAACGAATATTTTTGACA+TGG | - | chr6.2:14208244-14208263 | MS.gene074262:intron | 30.0% |
| !! | CATGAGTATTTTGTTATGTG+TGG | - | chr6.2:14208520-14208539 | MS.gene074262:intron | 30.0% |
| !! | CGAACGAATATTTTTGACAT+GGG | - | chr6.2:14208245-14208264 | MS.gene074262:intron | 30.0% |
| !! | GTATTGACTAATGAGTTCTT+TGG | - | chr6.2:14209259-14209278 | MS.gene074262:intron | 30.0% |
| !! | TGCTTTTTGTTAGATGTTGT+AGG | - | chr6.2:14208777-14208796 | MS.gene074262:intron | 30.0% |
| !! | TTAATTTGGGTTGTGAAATC+TGG | - | chr6.2:14208745-14208764 | MS.gene074262:intron | 30.0% |
| !!! | AGATTGGTTTTGTATGGATT+TGG | - | chr6.2:14208710-14208729 | MS.gene074262:intron | 30.0% |
| !!! | ATTGGTTTTGTATGGATTTG+GGG | - | chr6.2:14208712-14208731 | MS.gene074262:intron | 30.0% |
| !!! | GAGGTTTTTATGGTTTTGTT+TGG | - | chr6.2:14207893-14207912 | MS.gene074262:intron | 30.0% |
| !!! | GATTGGTTTTGTATGGATTT+GGG | - | chr6.2:14208711-14208730 | MS.gene074262:intron | 30.0% |
| !!! | GTAATTTTTGGTTTTCTCGA+TGG | - | chr6.2:14208889-14208908 | MS.gene074262:intron | 30.0% |
| !!! | GTTTTTTGGTTTGTGAAATG+TGG | - | chr6.2:14208995-14209014 | MS.gene074262:CDS | 30.0% |
| !!! | TATGGTTTTGTTTGGATTTG+GGG | - | chr6.2:14207901-14207920 | MS.gene074262:intron | 30.0% |
| !!! | TATTCTGTTTTCAGGTGATT+CGG | - | chr6.2:14210929-14210948 | MS.gene074262:intron | 30.0% |
| AAAAGTTAACAAGTCTGGCT+AGG | + | chr6.2:14209927-14209946 | None:intergenic | 35.0% | |
| AAACTGTTCTCAAATCTCTC+AGG | - | chr6.2:14207581-14207600 | MS.gene074262:intron | 35.0% | |
| AAATCTCTCAGGAACAACAA+AGG | - | chr6.2:14207592-14207611 | MS.gene074262:intron | 35.0% | |
| AATCTTGGGAAACCTATTCA+CGG | + | chr6.2:14208382-14208401 | None:intergenic | 35.0% | |
| AGTCTAGCTAGGTTATACAA+AGG | + | chr6.2:14210064-14210083 | None:intergenic | 35.0% | |
| ATAGGTTTCCCAAGATTCAT+TGG | - | chr6.2:14208385-14208404 | MS.gene074262:intron | 35.0% | |
| ATGTGTGGAAGAGATTGAAA+TGG | - | chr6.2:14208535-14208554 | MS.gene074262:intron | 35.0% | |
| CATACAGAACAGAATACTCA+TGG | + | chr6.2:14208338-14208357 | None:intergenic | 35.0% | |
| CATAGCATAGTACTCAATCT+CGG | + | chr6.2:14209378-14209397 | None:intergenic | 35.0% | |
| CATTATGTCTATCAGATCTG+AGG | - | chr6.2:14210565-14210584 | MS.gene074262:intron | 35.0% | |
| CCTTCAAAAGTTAACAAGTC+TGG | + | chr6.2:14209932-14209951 | None:intergenic | 35.0% | |
| GAATGTAACCAATGTATCAG+TGG | + | chr6.2:14209980-14209999 | None:intergenic | 35.0% | |
| GAGTATTCTGTTCTGTATGT+TGG | - | chr6.2:14208339-14208358 | MS.gene074262:intron | 35.0% | |
| GATTGAGTACTATGCTATGT+TGG | - | chr6.2:14209379-14209398 | MS.gene074262:intron | 35.0% | |
| GTCTGTTGTTAATAGACTCA+TGG | + | chr6.2:14207519-14207538 | None:intergenic | 35.0% | |
| GTGTCGAATAATATGTTACC+AGG | + | chr6.2:14210856-14210875 | None:intergenic | 35.0% | |
| TGAATACATTGGAGGAAATG+AGG | - | chr6.2:14207874-14207893 | MS.gene074262:intron | 35.0% | |
| TGTAATGTTGCAACTGTTGT+AGG | - | chr6.2:14209027-14209046 | MS.gene074262:intron | 35.0% | |
| TTAACTTAAACGGCTGTTGT+TGG | - | chr6.2:14210088-14210107 | MS.gene074262:intron | 35.0% | |
| TTTGAATGTGACCAATGCAT+CGG | + | chr6.2:14209829-14209848 | None:intergenic | 35.0% | |
| ! | AAGAGTGGGAAGTATACTTT+GGG | - | chr6.2:14207553-14207572 | MS.gene074262:CDS | 35.0% |
| ! | AGCTTTTGTATGCTTCTGTT+GGG | - | chr6.2:14208805-14208824 | MS.gene074262:intron | 35.0% |
| ! | GAACTCATTGATTATGCTTG+CGG | - | chr6.2:14209283-14209302 | MS.gene074262:intron | 35.0% |
| ! | GAGTATTTTGTTCTGTGTGT+TGG | - | chr6.2:14208925-14208944 | MS.gene074262:intron | 35.0% |
| ! | TAGCTTTTGTATGCTTCTGT+TGG | - | chr6.2:14208804-14208823 | MS.gene074262:intron | 35.0% |
| ! | TGGAGGAAATGAGGTTTTTA+TGG | - | chr6.2:14207883-14207902 | MS.gene074262:intron | 35.0% |
| ! | TGTGTTTGGAATGGGAAATA+TGG | - | chr6.2:14208441-14208460 | MS.gene074262:intron | 35.0% |
| ! | TTGTTTGACTTTGAGGAGAT+TGG | - | chr6.2:14208694-14208713 | MS.gene074262:intron | 35.0% |
| !! | AACAGGCTATTTTACGTATG+AGG | + | chr6.2:14209715-14209734 | None:intergenic | 35.0% |
| !! | AATGCATGGCTTTTGGAAAT+GGG | - | chr6.2:14207930-14207949 | MS.gene074262:intron | 35.0% |
| !! | TTGGTTTTCTCGATGGATAT+TGG | - | chr6.2:14208896-14208915 | MS.gene074262:intron | 35.0% |
| !!! | CCAGACTTGTTAACTTTTGA+AGG | - | chr6.2:14209929-14209948 | MS.gene074262:intron | 35.0% |
| !!! | TTGAGGAGATTGGTTTTGTA+TGG | - | chr6.2:14208704-14208723 | MS.gene074262:intron | 35.0% |
| ATCGAAGTCGTATCTAGTGT+CGG | - | chr6.2:14209772-14209791 | MS.gene074262:intron | 40.0% | |
| ATTGTAGGACTGACAGTCTT+TGG | - | chr6.2:14209591-14209610 | MS.gene074262:intron | 40.0% | |
| ATTTGGGGAGAATGAATGCA+TGG | - | chr6.2:14207916-14207935 | MS.gene074262:intron | 40.0% | |
| CTTATAGACAATGTGGACCT+CGG | - | chr6.2:14210781-14210800 | MS.gene074262:CDS | 40.0% | |
| GAAACCTATTCACGGCAATT+AGG | + | chr6.2:14208374-14208393 | None:intergenic | 40.0% | |
| GAATCAAAAGCTAGAGAACG+TGG | + | chr6.2:14209552-14209571 | None:intergenic | 40.0% | |
| GTCTCTTTGATTGGGAAATG+TGG | - | chr6.2:14208493-14208512 | MS.gene074262:intron | 40.0% | |
| GTTGGAGTTCATCACTACAA+CGG | - | chr6.2:14209407-14209426 | MS.gene074262:intron | 40.0% | |
| TGTTGATGTGTTGTCTTGTC+CGG | - | chr6.2:14209876-14209895 | MS.gene074262:intron | 40.0% | |
| TTGGAGTTCATCACTACAAC+GGG | - | chr6.2:14209408-14209427 | MS.gene074262:intron | 40.0% | |
| ! | GAAGAGTGGGAAGTATACTT+TGG | - | chr6.2:14207552-14207571 | MS.gene074262:CDS | 40.0% |
| ! | GAGAATGAATGCATGGCTTT+TGG | - | chr6.2:14207923-14207942 | MS.gene074262:intron | 40.0% |
| ! | TATCAGTGGTGTGTCAGTTT+TGG | + | chr6.2:14209966-14209985 | None:intergenic | 40.0% |
| !! | ATGCATGGCTTTTGGAAATG+GGG | - | chr6.2:14207931-14207950 | MS.gene074262:intron | 40.0% |
| !! | GAATGCATGGCTTTTGGAAA+TGG | - | chr6.2:14207929-14207948 | MS.gene074262:intron | 40.0% |
| !! | TGCTGCTGCTAAATTTTGAC+TGG | - | chr6.2:14210179-14210198 | MS.gene074262:intron | 40.0% |
| !!! | AGTTTTGTTTAGGGCCTGTT+TGG | - | chr6.2:14207975-14207994 | MS.gene074262:intron | 40.0% |
| !!! | CGGGAAGAGTGAATGTTTTT+TGG | - | chr6.2:14208981-14209000 | MS.gene074262:CDS | 40.0% |
| AAACGGGCCCTTAATGTTGT+AGG | - | chr6.2:14208186-14208205 | MS.gene074262:intron | 45.0% | |
| AGAGAGAGAGAGAGAGAGTA+CGG | + | chr6.2:14207403-14207422 | None:intergenic | 45.0% | |
| ATAGGCACTAGCACAGATAC+CGG | + | chr6.2:14209898-14209917 | None:intergenic | 45.0% | |
| CTAACAATTGCCCACCATTG+AGG | - | chr6.2:14209348-14209367 | MS.gene074262:intron | 45.0% | |
| CTGACACACCACTGATACAT+TGG | - | chr6.2:14209969-14209988 | MS.gene074262:intron | 45.0% | |
| GAAGAGAGAATGCTAGCTAG+AGG | + | chr6.2:14210425-14210444 | None:intergenic | 45.0% | |
| GAAGCCTAATTGCCGTGAAT+AGG | - | chr6.2:14208367-14208386 | MS.gene074262:intron | 45.0% | |
| GACATCATCAAGACCATACC+TGG | - | chr6.2:14210951-14210970 | MS.gene074262:intron | 45.0% | |
| GGGGTTAAGCTACTTAAGAC+TGG | + | chr6.2:14209643-14209662 | None:intergenic | 45.0% | |
| GTACTATGCTATGTTGGCGA+AGG | - | chr6.2:14209385-14209404 | MS.gene074262:intron | 45.0% | |
| GTTGATGTGTTTGTCGTGTC+CGG | - | chr6.2:14210024-14210043 | MS.gene074262:intron | 45.0% | |
| GTTGTGTTCGGTCACATTGT+AGG | - | chr6.2:14209576-14209595 | MS.gene074262:intron | 45.0% | |
| TACAACATTAAGGGCCCGTT+TGG | + | chr6.2:14208187-14208206 | None:intergenic | 45.0% | |
| TATGCTATGTTGGCGAAGGT+TGG | - | chr6.2:14209389-14209408 | MS.gene074262:intron | 45.0% | |
| TCAATCTCGGACTTCCTCAA+TGG | + | chr6.2:14209365-14209384 | None:intergenic | 45.0% | |
| TCGCTCTTGTGATGAAGAGT+GGG | - | chr6.2:14207539-14207558 | MS.gene074262:CDS | 45.0% | |
| TGTCTCAGCATTGTTGATCC+TGG | - | chr6.2:14210835-14210854 | MS.gene074262:CDS | 45.0% | |
| TTGATCAGTTGAGCCACATC+AGG | - | chr6.2:14210639-14210658 | MS.gene074262:intron | 45.0% | |
| AAAGGCAGTAGCACAGACAC+CGG | + | chr6.2:14210046-14210065 | None:intergenic | 50.0% | |
| AGTCTGGCTAGGCTATGCAT+AGG | + | chr6.2:14209916-14209935 | None:intergenic | 50.0% | |
| ATCTCGGACTTCCTCAATGG+TGG | + | chr6.2:14209362-14209381 | None:intergenic | 50.0% | |
| CATTAAGGGCCCGTTTGGAT+TGG | + | chr6.2:14208182-14208201 | None:intergenic | 50.0% | |
| CTCGCTCTTGTGATGAAGAG+TGG | - | chr6.2:14207538-14207557 | MS.gene074262:CDS | 50.0% | |
| TCTCGGACTTCCTCAATGGT+GGG | + | chr6.2:14209361-14209380 | None:intergenic | 50.0% | |
| ! | GAACGTGGCTTGCAAGTTCA+AGG | + | chr6.2:14209537-14209556 | None:intergenic | 50.0% |
| !! | CATCGGTGTTGTGTCGGTAT+TGG | + | chr6.2:14209812-14209831 | None:intergenic | 50.0% |
| !! | CCAATGCATCGGTGTTGTGT+CGG | + | chr6.2:14209818-14209837 | None:intergenic | 50.0% |
| CCGACACAACACCGATGCAT+TGG | - | chr6.2:14209815-14209834 | MS.gene074262:intron | 55.0% | |
| ! | ATTTTCCGCAAGCAGTGCCG+AGG | + | chr6.2:14210801-14210820 | None:intergenic | 55.0% |
| GTGGACCTCGGCACTGCTTG+CGG | - | chr6.2:14210793-14210812 | MS.gene074262:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 14207381 | 14210983 | 14207381 | ID=MS.gene074262 |
| chr6.2 | mRNA | 14207381 | 14210983 | 14207381 | ID=MS.gene074262.t1;Parent=MS.gene074262 |
| chr6.2 | exon | 14210981 | 14210983 | 14210981 | ID=MS.gene074262.t1.exon1;Parent=MS.gene074262.t1 |
| chr6.2 | CDS | 14210981 | 14210983 | 14210981 | ID=cds.MS.gene074262.t1;Parent=MS.gene074262.t1 |
| chr6.2 | exon | 14210751 | 14210856 | 14210751 | ID=MS.gene074262.t1.exon2;Parent=MS.gene074262.t1 |
| chr6.2 | CDS | 14210751 | 14210856 | 14210751 | ID=cds.MS.gene074262.t1;Parent=MS.gene074262.t1 |
| chr6.2 | exon | 14208933 | 14209034 | 14208933 | ID=MS.gene074262.t1.exon3;Parent=MS.gene074262.t1 |
| chr6.2 | CDS | 14208933 | 14209034 | 14208933 | ID=cds.MS.gene074262.t1;Parent=MS.gene074262.t1 |
| chr6.2 | exon | 14207508 | 14207576 | 14207508 | ID=MS.gene074262.t1.exon4;Parent=MS.gene074262.t1 |
| chr6.2 | CDS | 14207508 | 14207576 | 14207508 | ID=cds.MS.gene074262.t1;Parent=MS.gene074262.t1 |
| chr6.2 | exon | 14207381 | 14207421 | 14207381 | ID=MS.gene074262.t1.exon5;Parent=MS.gene074262.t1 |
| chr6.2 | CDS | 14207381 | 14207421 | 14207381 | ID=cds.MS.gene074262.t1;Parent=MS.gene074262.t1 |
| Gene Sequence |
| Protein sequence |
