Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07462.t1 | XP_013468821.1 | 98 | 688 | 14 | 0 | 1 | 688 | 66 | 753 | 0.00E+00 | 1341.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07462.t1 | A0A072VNA2 | 98.0 | 688 | 14 | 0 | 1 | 688 | 66 | 753 | 0.0e+00 | 1341.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene07462 | -0.865171 | 7.16E-65 | -1.69E-46 |
| MS.gene050955 | MS.gene07462 | -0.870904 | 1.03E-66 | -1.69E-46 |
| MS.gene051033 | MS.gene07462 | 0.840292 | 9.49E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene07462 | -0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene07462 | -0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene07462 | -0.867272 | 1.55E-65 | -1.69E-46 |
| MS.gene055555 | MS.gene07462 | -0.806725 | 7.15E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene07462 | -0.846216 | 2.50E-59 | -1.69E-46 |
| MS.gene06118 | MS.gene07462 | -0.82124 | 4.48E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07462.t1 | MTR_1g077190 | 97.965 | 688 | 14 | 0 | 1 | 688 | 66 | 753 | 0.0 | 1398 |
| MS.gene07462.t1 | MTR_1g077190 | 97.093 | 688 | 14 | 1 | 1 | 688 | 66 | 747 | 0.0 | 1382 |
| MS.gene07462.t1 | MTR_8g010360 | 31.551 | 561 | 315 | 10 | 122 | 681 | 45 | 537 | 1.50e-75 | 253 |
| MS.gene07462.t1 | MTR_8g010360 | 31.512 | 549 | 307 | 10 | 122 | 669 | 45 | 525 | 3.99e-74 | 249 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07462.t1 | AT5G23490 | 52.514 | 716 | 274 | 9 | 1 | 688 | 52 | 729 | 0.0 | 661 |
| MS.gene07462.t1 | AT5G23490 | 58.574 | 589 | 209 | 5 | 101 | 688 | 6 | 560 | 0.0 | 649 |
| MS.gene07462.t1 | AT5G23490 | 52.639 | 701 | 266 | 9 | 1 | 673 | 52 | 714 | 0.0 | 644 |
| MS.gene07462.t1 | AT5G23490 | 52.117 | 685 | 262 | 9 | 1 | 657 | 52 | 698 | 0.0 | 619 |
| MS.gene07462.t1 | AT5G08440 | 50.621 | 725 | 271 | 13 | 1 | 688 | 52 | 726 | 0.0 | 617 |
| MS.gene07462.t1 | AT5G08440 | 50.483 | 725 | 271 | 13 | 1 | 688 | 52 | 725 | 0.0 | 616 |
| MS.gene07462.t1 | AT5G08440 | 47.662 | 770 | 269 | 15 | 1 | 688 | 52 | 769 | 0.0 | 595 |
| MS.gene07462.t1 | AT5G23510 | 56.985 | 272 | 99 | 5 | 414 | 683 | 6 | 261 | 8.40e-98 | 302 |
| MS.gene07462.t1 | AT5G23510 | 57.249 | 269 | 97 | 5 | 417 | 683 | 48 | 300 | 1.11e-97 | 303 |
| MS.gene07462.t1 | AT5G23510 | 57.915 | 259 | 92 | 4 | 414 | 671 | 6 | 248 | 1.98e-96 | 298 |
| MS.gene07462.t1 | AT3G03560 | 42.396 | 217 | 119 | 2 | 465 | 680 | 309 | 520 | 2.98e-56 | 200 |
| MS.gene07462.t1 | AT3G03560 | 36.943 | 157 | 94 | 1 | 116 | 267 | 20 | 176 | 1.20e-20 | 96.7 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATATGGCTCTGCATTTC+AGG | 0.154329 | 1.3:-55474824 | None:intergenic |
| TTCGCGTTCCCGGGCCTTAA+TGG | 0.170056 | 1.3:-55465201 | None:intergenic |
| CCGGCTTAGGTCCGAGCTTC+TGG | 0.184157 | 1.3:+55462044 | MS.gene07462:CDS |
| ACTGTAACCTTCTTTCTTAA+TGG | 0.211432 | 1.3:-55475050 | None:intergenic |
| GAATTAGAATTATTTGTTTC+AGG | 0.218422 | 1.3:-55465083 | None:intergenic |
| ATAGAGGGCCTTCAAATTTC+AGG | 0.222760 | 1.3:+55473046 | MS.gene07462:CDS |
| TTTGAGAATAGTCAAATAAA+TGG | 0.241991 | 1.3:+55464780 | MS.gene07462:CDS |
| TTCTTAATGGCCAATGTTGC+TGG | 0.248850 | 1.3:-55475037 | None:intergenic |
| AGACCGGATATCTTGATATA+TGG | 0.266924 | 1.3:+55475011 | MS.gene07462:intron |
| TTATTTGACTATTCTCAAAA+TGG | 0.271174 | 1.3:-55464776 | None:intergenic |
| TATTTAGGATCTGGCCATTA+AGG | 0.274115 | 1.3:+55465187 | MS.gene07462:intron |
| AACACCTTCAATATAATTAA+AGG | 0.279049 | 1.3:-55473307 | None:intergenic |
| TCAAGAACTGGTGGTAAATA+TGG | 0.296011 | 1.3:-55472370 | None:intergenic |
| AAGAAGAGATCATTCTATTA+AGG | 0.307921 | 1.3:+55465222 | MS.gene07462:CDS |
| TGATCTCTTCTTCGCGTTCC+CGG | 0.309511 | 1.3:-55465211 | None:intergenic |
| ATTTCAGGAGATCCCTTTCC+AGG | 0.328097 | 1.3:+55473061 | MS.gene07462:CDS |
| CATGCCTGAAGTTCCCTTCC+TGG | 0.336429 | 1.3:-55473079 | None:intergenic |
| CGAGCTTCTGGGTAAAATTC+AGG | 0.341286 | 1.3:+55462056 | MS.gene07462:CDS |
| TGTGAAAACTCCTCTCTATA+TGG | 0.343377 | 1.3:-55474838 | None:intergenic |
| GAACTCCATTGGTGCACCTT+TGG | 0.344778 | 1.3:+55470045 | MS.gene07462:CDS |
| CAGAAAGAGGGGAAGGAGGA+AGG | 0.345676 | 1.3:+55476907 | MS.gene07462:CDS |
| TCCACAGGCAGCTGATCATT+TGG | 0.346400 | 1.3:-55464819 | None:intergenic |
| TCTGTTATTACAACTCCATT+TGG | 0.355033 | 1.3:-55475088 | None:intergenic |
| AGAGAGAGACACCTGCTAAC+TGG | 0.357400 | 1.3:+55472290 | MS.gene07462:CDS |
| GCATTGCCATCAAGCCTTGC+CGG | 0.368979 | 1.3:-55465061 | None:intergenic |
| ACGTCTTACCTATGCATTGC+AGG | 0.369003 | 1.3:+55465631 | MS.gene07462:CDS |
| TTCATATAAAGTTTCTCTTT+CGG | 0.374444 | 1.3:+55474871 | MS.gene07462:CDS |
| CGAGAATCATGATCTCCTTC+TGG | 0.377181 | 1.3:-55465026 | None:intergenic |
| GGAGAGATTGACCTCATAAA+TGG | 0.378578 | 1.3:-55464870 | None:intergenic |
| AAGTCCAGCCTCTGGATAAC+AGG | 0.378730 | 1.3:+55473474 | MS.gene07462:CDS |
| TGTTGGACTTCCAGTGGATT+CGG | 0.379090 | 1.3:+55473268 | MS.gene07462:intron |
| CTTCCAGTGGATTCGGCACC+TGG | 0.381674 | 1.3:+55473275 | MS.gene07462:intron |
| ATATGGAGAATATGAGGAAC+TGG | 0.382361 | 1.3:-55472353 | None:intergenic |
| CATTGCCATCAAGCCTTGCC+GGG | 0.385101 | 1.3:-55465060 | None:intergenic |
| CATCAGGAACAGGTGGCTGC+AGG | 0.385975 | 1.3:-55465897 | None:intergenic |
| CCATGACCTGGTTCCTTCCA+TGG | 0.392679 | 1.3:-55464615 | None:intergenic |
| TTCACCCCGGCAAGGCTTGA+TGG | 0.393328 | 1.3:+55465055 | MS.gene07462:CDS |
| GGATTATTCTTCAACAAGTA+AGG | 0.396389 | 1.3:+55476929 | MS.gene07462:CDS |
| TTTCTTCAATTATGTCTTGT+CGG | 0.402541 | 1.3:-55465604 | None:intergenic |
| CTGTAGGTTGTGATTCCATA+TGG | 0.403740 | 1.3:+55475577 | MS.gene07462:intron |
| TCAGCACTGATAAGATAGTT+TGG | 0.405469 | 1.3:-55473425 | None:intergenic |
| CTTTCCAGGAAGGGAACTTC+AGG | 0.406810 | 1.3:+55473075 | MS.gene07462:CDS |
| GATCTCTTCTTCGCGTTCCC+GGG | 0.408170 | 1.3:-55465210 | None:intergenic |
| TACCAGAGTGGCATAGGTGG+TGG | 0.408446 | 1.3:+55470261 | MS.gene07462:CDS |
| TCTGGGTAAAATTCAGGAAC+TGG | 0.414732 | 1.3:+55462062 | MS.gene07462:CDS |
| CTGAGTAACTACCTGGTGAT+TGG | 0.414916 | 1.3:-55472155 | None:intergenic |
| TCATCAACAGTAGTATTATA+AGG | 0.416528 | 1.3:-55472328 | None:intergenic |
| TCCACTTCATTGTTGCTGAC+AGG | 0.416586 | 1.3:-55472238 | None:intergenic |
| CACCACTAGTTGTAACTTTG+AGG | 0.421962 | 1.3:+55473120 | MS.gene07462:CDS |
| TCCTCAGGCAGGCACTGGTT+GGG | 0.425250 | 1.3:+55470224 | MS.gene07462:CDS |
| TCAGCCCTCTGTTGATCCTC+AGG | 0.428770 | 1.3:+55470209 | MS.gene07462:CDS |
| CTAACAATGGACTGGGCATC+AGG | 0.432424 | 1.3:-55465913 | None:intergenic |
| GACACTCCGCATGAATACTA+TGG | 0.433972 | 1.3:+55472181 | MS.gene07462:CDS |
| CGGCTTAGGTCCGAGCTTCT+GGG | 0.434396 | 1.3:+55462045 | MS.gene07462:CDS |
| TTCTAATTCCTTACTGAAGC+AGG | 0.435542 | 1.3:+55465097 | MS.gene07462:CDS |
| AGGCACTGGTTGGGATGCGA+TGG | 0.436458 | 1.3:+55470233 | MS.gene07462:CDS |
| GACAGGTAGAAGAGGATAAC+CGG | 0.436912 | 1.3:+55462025 | None:intergenic |
| GGTTCCTTTAATTATATTGA+AGG | 0.440684 | 1.3:+55473303 | MS.gene07462:CDS |
| AGAAAGAGGGGAAGGAGGAA+GGG | 0.441587 | 1.3:+55476908 | MS.gene07462:CDS |
| ATCCTCAGGCAGGCACTGGT+TGG | 0.441633 | 1.3:+55470223 | MS.gene07462:CDS |
| TTGGGGAGATATTCACCTCT+TGG | 0.442696 | 1.3:+55470312 | MS.gene07462:CDS |
| CGTCAGTCATTTCCATCATC+AGG | 0.444341 | 1.3:+55464651 | MS.gene07462:CDS |
| ATTGTGTAGCAACATTTGTA+TGG | 0.452679 | 1.3:-55470015 | None:intergenic |
| GGTTCCTTCCATGGAGCACC+TGG | 0.453869 | 1.3:-55464606 | None:intergenic |
| AATTCTGAAATATGACCATA+TGG | 0.456009 | 1.3:-55475592 | None:intergenic |
| GAAGAAGGTTCTTCAAGAAC+TGG | 0.456615 | 1.3:-55472382 | None:intergenic |
| TGATCCATTACCAGCTATAG+AGG | 0.460172 | 1.3:+55473030 | MS.gene07462:CDS |
| GAGTGGCATAGGTGGTGGGC+TGG | 0.461565 | 1.3:+55470266 | MS.gene07462:CDS |
| TGCCATTGAAGTCCAGCCTC+TGG | 0.462909 | 1.3:+55473466 | MS.gene07462:CDS |
| CTATGGTCCCCATCACCCTC+TGG | 0.462959 | 1.3:-55472265 | None:intergenic |
| GTTGATCCTCAGGCAGGCAC+TGG | 0.467798 | 1.3:+55470219 | MS.gene07462:CDS |
| TTTGATATCACGTACATGCT+TGG | 0.469259 | 1.3:-55464891 | None:intergenic |
| GGGACAGAAAGAGGGGAAGG+AGG | 0.474019 | 1.3:+55476903 | MS.gene07462:CDS |
| CCCTCTGTTGATCCTCAGGC+AGG | 0.474269 | 1.3:+55470213 | MS.gene07462:CDS |
| ATGGACTGGGCATCAGGAAC+AGG | 0.474301 | 1.3:-55465907 | None:intergenic |
| GACCGGATATCTTGATATAT+GGG | 0.476335 | 1.3:+55475012 | MS.gene07462:intron |
| CCACTTCATTGTTGCTGACA+GGG | 0.480306 | 1.3:-55472237 | None:intergenic |
| CATATTCAATTACCTGATGA+TGG | 0.481725 | 1.3:-55464663 | None:intergenic |
| GTCAGGATGCACAGCAAGAA+AGG | 0.482547 | 1.3:+55465830 | MS.gene07462:intron |
| ATCAAATGCAGCGGACCAAA+TGG | 0.483199 | 1.3:+55475073 | MS.gene07462:CDS |
| TTTGTTATACGTGGCTCCAC+TGG | 0.483383 | 1.3:+55475613 | MS.gene07462:CDS |
| TGACATTGCTAACAATGGAC+TGG | 0.485025 | 1.3:-55465921 | None:intergenic |
| ACTTACCCACTAACATCTGT+TGG | 0.486028 | 1.3:-55475667 | None:intergenic |
| AGGGATCTCCTGAAATTTGA+AGG | 0.487131 | 1.3:-55473054 | None:intergenic |
| TGAAGTTCCCTTCCTGGAAA+GGG | 0.487655 | 1.3:-55473073 | None:intergenic |
| GAATGTTGATGCTGATGACT+TGG | 0.489516 | 1.3:+55470293 | MS.gene07462:CDS |
| TGGATGATCCAGAGGGTGAT+GGG | 0.490634 | 1.3:+55472257 | MS.gene07462:CDS |
| ACATTGGCCATTAAGAAAGA+AGG | 0.491563 | 1.3:+55475043 | MS.gene07462:CDS |
| ACGCAATGAAAAGTATGTCT+TGG | 0.493375 | 1.3:+55465382 | MS.gene07462:CDS |
| TTCCCATATATCAAGATATC+CGG | 0.496905 | 1.3:-55475014 | None:intergenic |
| TGCAGGCAGGGGACAGAAAG+AGG | 0.498091 | 1.3:+55476894 | MS.gene07462:intron |
| CCTGGTGATTGGGTACATCA+TGG | 0.498164 | 1.3:-55472144 | None:intergenic |
| AGCTGTCTTCACCATTTATG+AGG | 0.498949 | 1.3:+55464859 | MS.gene07462:CDS |
| TAGAAGAGGATAACCGGCTT+AGG | 0.499786 | 1.3:+55462031 | MS.gene07462:CDS |
| AGGATCTGGCCATTAAGGCC+CGG | 0.504471 | 1.3:+55465192 | MS.gene07462:intron |
| GTCTTGTTGCTGTTGATCAA+AGG | 0.508842 | 1.3:-55465549 | None:intergenic |
| GGATCTGGCCATTAAGGCCC+GGG | 0.508867 | 1.3:+55465193 | MS.gene07462:intron |
| TGAGTAACTACCTGGTGATT+GGG | 0.510016 | 1.3:-55472154 | None:intergenic |
| CTGAAGTTCCCTTCCTGGAA+AGG | 0.510257 | 1.3:-55473074 | None:intergenic |
| ATTTGAAGGCCCTCTATAGC+TGG | 0.510743 | 1.3:-55473040 | None:intergenic |
| TTGTCAGAACTCCAGTTAGC+AGG | 0.513672 | 1.3:-55472301 | None:intergenic |
| CTTACCCACTAACATCTGTT+GGG | 0.517206 | 1.3:-55475666 | None:intergenic |
| TGGATTCGGCACCTGGATGA+TGG | 0.517246 | 1.3:+55473282 | MS.gene07462:CDS |
| GATATTCACCTCTTGGAAGC+AGG | 0.517742 | 1.3:+55470319 | MS.gene07462:CDS |
| CAGGGGACAGAAAGAGGGGA+AGG | 0.523467 | 1.3:+55476900 | MS.gene07462:CDS |
| AGGAGATCCCTTTCCAGGAA+GGG | 0.524902 | 1.3:+55473066 | MS.gene07462:CDS |
| CCTTGTAGATGCCGCATCAA+AGG | 0.525427 | 1.3:+55465571 | MS.gene07462:CDS |
| GCGCATAGCATATATGCGTC+TGG | 0.526607 | 1.3:+55465409 | MS.gene07462:CDS |
| CAGGAGATCCCTTTCCAGGA+AGG | 0.528847 | 1.3:+55473065 | MS.gene07462:CDS |
| GTGGATGATCCAGAGGGTGA+TGG | 0.531365 | 1.3:+55472256 | MS.gene07462:CDS |
| CAATCACCAGGTAGTTACTC+AGG | 0.531437 | 1.3:+55472156 | MS.gene07462:CDS |
| ATCAGGAACAGGTGGCTGCA+GGG | 0.531462 | 1.3:-55465896 | None:intergenic |
| GCTTCCTGTTATCCAGAGGC+TGG | 0.536268 | 1.3:-55473478 | None:intergenic |
| GGTCGCTACCAGAGTGGCAT+AGG | 0.536873 | 1.3:+55470255 | MS.gene07462:CDS |
| TATGCTGAGGTACCAGTTCG+AGG | 0.537178 | 1.3:-55470167 | None:intergenic |
| AATGTTGATGCTGATGACTT+GGG | 0.538781 | 1.3:+55470294 | MS.gene07462:CDS |
| CAATCACCATTGAACTCCAT+TGG | 0.539365 | 1.3:+55470034 | MS.gene07462:CDS |
| GCTTCATACGTTCCATGACC+TGG | 0.539584 | 1.3:-55464627 | None:intergenic |
| CTGGTGATTGGGTACATCAT+GGG | 0.542003 | 1.3:-55472143 | None:intergenic |
| CGCTACCAGAGTGGCATAGG+TGG | 0.542611 | 1.3:+55470258 | MS.gene07462:CDS |
| TTGGGTACATCATGGGCTAA+AGG | 0.544021 | 1.3:-55472136 | None:intergenic |
| GCCCACCACCTATGCCACTC+TGG | 0.544882 | 1.3:-55470263 | None:intergenic |
| CCAGAAGCTCGGACCTAAGC+CGG | 0.547460 | 1.3:-55462044 | None:intergenic |
| AGGCCCTCTATAGCTGGTAA+TGG | 0.547579 | 1.3:-55473034 | None:intergenic |
| AATCAAGTCCAGGTGCTCCA+TGG | 0.547704 | 1.3:+55464598 | MS.gene07462:CDS |
| GCAGGCAGGGGACAGAAAGA+GGG | 0.548443 | 1.3:+55476895 | MS.gene07462:intron |
| CCTTTGATGCGGCATCTACA+AGG | 0.548663 | 1.3:-55465571 | None:intergenic |
| GGCACTGGTTGGGATGCGAT+GGG | 0.549474 | 1.3:+55470234 | MS.gene07462:CDS |
| CCTTCAGAAAACGAAGAAGA+AGG | 0.549574 | 1.3:-55472397 | None:intergenic |
| TGGTAAATATGGAGAATATG+AGG | 0.550745 | 1.3:-55472359 | None:intergenic |
| CCATGGAAGGAACCAGGTCA+TGG | 0.552046 | 1.3:+55464615 | MS.gene07462:CDS |
| ATCCAGAGGCTGGACTTCAA+TGG | 0.552235 | 1.3:-55473468 | None:intergenic |
| GATTATTCTTCAACAAGTAA+GGG | 0.552399 | 1.3:+55476930 | MS.gene07462:CDS |
| ACAGAGGTTATATGAACCAC+TGG | 0.556656 | 1.3:+55464569 | MS.gene07462:intron |
| CATTGAGATTATTCATCCGA+AGG | 0.558865 | 1.3:+55476379 | MS.gene07462:CDS |
| ACAACTAGTGGTGCCGTGGA+TGG | 0.559737 | 1.3:-55473110 | None:intergenic |
| CGATTTAGTTCACCCCGGCA+AGG | 0.559852 | 1.3:+55465047 | MS.gene07462:CDS |
| TGTGTTACAGTCGAAGCTAA+AGG | 0.561737 | 1.3:+55469952 | MS.gene07462:intron |
| AGGTGGTACCTGCTTCAGTA+AGG | 0.563007 | 1.3:-55465105 | None:intergenic |
| AGTTGCCAAAGGTGCACCAA+TGG | 0.564389 | 1.3:-55470050 | None:intergenic |
| AACAGCCCAACAGATGTTAG+TGG | 0.564825 | 1.3:+55475661 | MS.gene07462:CDS |
| CACCTCAAAGTTACAACTAG+TGG | 0.566565 | 1.3:-55473122 | None:intergenic |
| TATATGGGAACCAGCAACAT+TGG | 0.568462 | 1.3:+55475027 | MS.gene07462:CDS |
| CAGGTGTCTCTCTCTCGCTA+TGG | 0.572083 | 1.3:-55472282 | None:intergenic |
| CCATGATGTACCCAATCACC+AGG | 0.574672 | 1.3:+55472144 | MS.gene07462:CDS |
| CCCTGTCAGCAACAATGAAG+TGG | 0.574916 | 1.3:+55472237 | MS.gene07462:CDS |
| GGTGCACCAATGGAGTTCAA+TGG | 0.577278 | 1.3:-55470040 | None:intergenic |
| AAAACTAACCTGCAATGCAT+AGG | 0.577316 | 1.3:-55465639 | None:intergenic |
| CATTGTTGCTGACAGGGTCA+CGG | 0.578004 | 1.3:-55472231 | None:intergenic |
| TAACAGATGTTCAGCACCAG+TGG | 0.579121 | 1.3:-55475629 | None:intergenic |
| ACCAGAGTGGCATAGGTGGT+GGG | 0.579460 | 1.3:+55470262 | MS.gene07462:CDS |
| AAGTCCAGGTGCTCCATGGA+AGG | 0.580114 | 1.3:+55464602 | MS.gene07462:CDS |
| CACAGTATCAAATGACACCT+TGG | 0.585021 | 1.3:+55469978 | MS.gene07462:CDS |
| ATTTCAGAATTTGTTATACG+TGG | 0.589942 | 1.3:+55475604 | MS.gene07462:CDS |
| CAACAGTAGTATTATAAGGA+GGG | 0.592804 | 1.3:-55472324 | None:intergenic |
| TCAACAGTAGTATTATAAGG+AGG | 0.593250 | 1.3:-55472325 | None:intergenic |
| TCCCAACCAGTGCCTGCCTG+AGG | 0.593859 | 1.3:-55470225 | None:intergenic |
| AATTAAAGGAACCATCATCC+AGG | 0.596209 | 1.3:-55473293 | None:intergenic |
| CAGGCAGGGGACAGAAAGAG+GGG | 0.596293 | 1.3:+55476896 | MS.gene07462:intron |
| ATTGAGATTATTCATCCGAA+GGG | 0.596981 | 1.3:+55476380 | MS.gene07462:CDS |
| GACTGGGCATCAGGAACAGG+TGG | 0.598965 | 1.3:-55465904 | None:intergenic |
| GACCTTGACATTGCTAACAA+TGG | 0.599564 | 1.3:-55465926 | None:intergenic |
| GGTGCTCCATGGAAGGAACC+AGG | 0.601865 | 1.3:+55464609 | MS.gene07462:CDS |
| TCTAGCGGATTATTCTGCTA+AGG | 0.602226 | 1.3:+55465250 | MS.gene07462:CDS |
| GTCCATTGTTAGCAATGTCA+AGG | 0.604470 | 1.3:+55465924 | MS.gene07462:CDS |
| GGAAGGGAACTTCAGGCATG+TGG | 0.605716 | 1.3:+55473082 | MS.gene07462:CDS |
| GACATTGCTAACAATGGACT+GGG | 0.606388 | 1.3:-55465920 | None:intergenic |
| CAGCTGCCTGTGGATAATGT+TGG | 0.611413 | 1.3:+55464828 | MS.gene07462:CDS |
| AAATGCAGAGCCATATAGAG+AGG | 0.617175 | 1.3:+55474828 | MS.gene07462:CDS |
| CAATGAAGTGGATGATCCAG+AGG | 0.619876 | 1.3:+55472249 | MS.gene07462:CDS |
| AGGGAGTATTCTGCAAGAAG+AGG | 0.620512 | 1.3:-55465877 | None:intergenic |
| GAAGGTTCTTCAAGAACTGG+TGG | 0.621112 | 1.3:-55472379 | None:intergenic |
| AGTTACAACTAGTGGTGCCG+TGG | 0.622502 | 1.3:-55473114 | None:intergenic |
| GAGTGGCCAACATTATCCAC+AGG | 0.622844 | 1.3:-55464834 | None:intergenic |
| ATTGCCATCAAGCCTTGCCG+GGG | 0.623363 | 1.3:-55465059 | None:intergenic |
| TTGCGCTTCCTGTTATCCAG+AGG | 0.625641 | 1.3:-55473482 | None:intergenic |
| TCCAAATGATCAGCTGCCTG+TGG | 0.625830 | 1.3:+55464818 | MS.gene07462:CDS |
| ATAAGACATACATTGGTCGA+TGG | 0.629639 | 1.3:-55475121 | None:intergenic |
| TCGAACTGGTACCTCAGCAT+AGG | 0.629724 | 1.3:+55470169 | MS.gene07462:CDS |
| ATCTCTCCATAGTATTCATG+CGG | 0.631461 | 1.3:-55472187 | None:intergenic |
| CCTGCCTGAGGATCAACAGA+GGG | 0.633473 | 1.3:-55470213 | None:intergenic |
| GATCCATTACCAGCTATAGA+GGG | 0.634668 | 1.3:+55473031 | MS.gene07462:CDS |
| GCATGTGGATACTCCATCCA+CGG | 0.637591 | 1.3:+55473097 | MS.gene07462:CDS |
| TATGGAGAATATGAGGAACT+GGG | 0.638214 | 1.3:-55472352 | None:intergenic |
| ACAGCCCAACAGATGTTAGT+GGG | 0.640263 | 1.3:+55475662 | MS.gene07462:CDS |
| GATAACAAGAAGATCACTTG+TGG | 0.640928 | 1.3:+55474260 | MS.gene07462:CDS |
| GGATGATCCAGAGGGTGATG+GGG | 0.641317 | 1.3:+55472258 | MS.gene07462:CDS |
| TGTCGTAGGCATCTACCAGA+AGG | 0.641674 | 1.3:+55465011 | MS.gene07462:intron |
| AAGCGTACTGAAGTTGCCAA+AGG | 0.655675 | 1.3:-55470061 | None:intergenic |
| AATCACCAGGTAGTTACTCA+GGG | 0.655884 | 1.3:+55472157 | MS.gene07462:CDS |
| TCTGGATAACAGGAAGCGCA+AGG | 0.658265 | 1.3:+55473484 | MS.gene07462:CDS |
| TGTCACCCTGAGTAACTACC+TGG | 0.658789 | 1.3:-55472162 | None:intergenic |
| ATGTTGATGCTGATGACTTG+GGG | 0.666256 | 1.3:+55470295 | MS.gene07462:CDS |
| ATGGTGAAGACAGCTGAGAG+TGG | 0.671201 | 1.3:-55464851 | None:intergenic |
| TCTATTAAGGAAACATCTAG+CGG | 0.673451 | 1.3:+55465235 | MS.gene07462:CDS |
| ATTCTCGATTTAGTTCACCC+CGG | 0.678246 | 1.3:+55465042 | MS.gene07462:CDS |
| ACTTGAGAGTACCTATGCTG+AGG | 0.680645 | 1.3:-55470180 | None:intergenic |
| GGTTACAGTATCAAATGCAG+CGG | 0.682350 | 1.3:+55475064 | MS.gene07462:CDS |
| CAGGCTCACCTGCTTCCAAG+AGG | 0.683191 | 1.3:-55470327 | None:intergenic |
| AATGAAGTGGATGATCCAGA+GGG | 0.696726 | 1.3:+55472250 | MS.gene07462:CDS |
| GCCTGCCTGAGGATCAACAG+AGG | 0.698053 | 1.3:-55470214 | None:intergenic |
| GTATGATAAAGCCTTTGATG+CGG | 0.698087 | 1.3:-55465582 | None:intergenic |
| GCGATGGGTCGCTACCAGAG+TGG | 0.709013 | 1.3:+55470249 | MS.gene07462:CDS |
| TGGTTCATATCTGAATGCCA+AGG | 0.720853 | 1.3:-55469995 | None:intergenic |
| TAATCTCAATGTGAGCACAA+TGG | 0.736755 | 1.3:-55476367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 55462030 | 55476949 | 55462030 | ID=MS.gene07462 |
| chr1.3 | mRNA | 55462030 | 55476949 | 55462030 | ID=MS.gene07462.t1;Parent=MS.gene07462 |
| chr1.3 | exon | 55462030 | 55462092 | 55462030 | ID=MS.gene07462.t1.exon1;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55462030 | 55462092 | 55462030 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55464573 | 55464672 | 55464573 | ID=MS.gene07462.t1.exon2;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55464573 | 55464672 | 55464573 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55464772 | 55464898 | 55464772 | ID=MS.gene07462.t1.exon3;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55464772 | 55464898 | 55464772 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55465019 | 55465118 | 55465019 | ID=MS.gene07462.t1.exon4;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55465019 | 55465118 | 55465019 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55465194 | 55465271 | 55465194 | ID=MS.gene07462.t1.exon5;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55465194 | 55465271 | 55465194 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55465371 | 55465430 | 55465371 | ID=MS.gene07462.t1.exon6;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55465371 | 55465430 | 55465371 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55465548 | 55465652 | 55465548 | ID=MS.gene07462.t1.exon7;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55465548 | 55465652 | 55465548 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55465835 | 55465945 | 55465835 | ID=MS.gene07462.t1.exon8;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55465835 | 55465945 | 55465835 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55469730 | 55469771 | 55469730 | ID=MS.gene07462.t1.exon9;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55469730 | 55469771 | 55469730 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55469962 | 55470075 | 55469962 | ID=MS.gene07462.t1.exon10;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55469962 | 55470075 | 55469962 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55470156 | 55470340 | 55470156 | ID=MS.gene07462.t1.exon11;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55470156 | 55470340 | 55470156 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55472132 | 55472418 | 55472132 | ID=MS.gene07462.t1.exon12;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55472132 | 55472418 | 55472132 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55473020 | 55473141 | 55473020 | ID=MS.gene07462.t1.exon13;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55473020 | 55473141 | 55473020 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55473282 | 55473324 | 55473282 | ID=MS.gene07462.t1.exon14;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55473282 | 55473324 | 55473282 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55473414 | 55473505 | 55473414 | ID=MS.gene07462.t1.exon15;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55473414 | 55473505 | 55473414 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55474233 | 55474281 | 55474233 | ID=MS.gene07462.t1.exon16;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55474233 | 55474281 | 55474233 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55474822 | 55474892 | 55474822 | ID=MS.gene07462.t1.exon17;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55474822 | 55474892 | 55474822 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55475013 | 55475132 | 55475013 | ID=MS.gene07462.t1.exon18;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55475013 | 55475132 | 55475013 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55475583 | 55475683 | 55475583 | ID=MS.gene07462.t1.exon19;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55475583 | 55475683 | 55475583 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55476356 | 55476401 | 55476356 | ID=MS.gene07462.t1.exon20;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55476356 | 55476401 | 55476356 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| chr1.3 | exon | 55476899 | 55476949 | 55476899 | ID=MS.gene07462.t1.exon21;Parent=MS.gene07462.t1 |
| chr1.3 | CDS | 55476899 | 55476949 | 55476899 | ID=cds.MS.gene07462.t1;Parent=MS.gene07462.t1 |
| Gene Sequence |
| Protein sequence |
