AlfalfaGEDB | MS.gene07830

M. sativa cultivar XinJiangDaYe / MS.gene07830

KEGG: K15718
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0016702 GO:0043167 GO:0043169 GO:0046872 GO:0051213 GO:0055114
PFAM: PF00305.22 PF01477.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07830.t1	XP_003627174.1	94.5	861	47	0	1	861	1	861	0.00E+00	1667.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07830.t1	P38414	78.2	866	184	2	1	861	1	866	0.0e+00	1405.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07830.t1	G7LIA0	94.5	861	47	0	1	861	1	861	0.0e+00	1667.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050780	MS.gene07830	0.823392	1.42E-53	-1.69E-46
MS.gene051789	MS.gene07830	0.806622	7.52E-50	-1.69E-46
MS.gene052142	MS.gene07830	0.827615	1.42E-54	-1.69E-46
MS.gene052698	MS.gene07830	0.928028	5.14E-92	-1.69E-46
MS.gene053074	MS.gene07830	0.814185	1.75E-51	-1.69E-46
MS.gene053383	MS.gene07830	0.808475	3.04E-50	-1.69E-46
MS.gene05456	MS.gene07830	0.817707	2.87E-52	-1.69E-46
MS.gene05468	MS.gene07830	0.80028	1.55E-48	-1.69E-46
MS.gene055359	MS.gene07830	0.835621	1.51E-56	-1.69E-46
MS.gene058168	MS.gene07830	0.817713	2.86E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene07830.t1	MTR_8g018430	94.541	861	47	0	1	861	1	861	1700
MS.gene07830.t1	MTR_8g018520	82.907	860	143	1	6	861	9	868	1487
MS.gene07830.t1	MTR_8g018510	81.640	866	152	3	2	861	5	869	1484
MS.gene07830.t1	MTR_8g018570	79.814	862	168	3	6	861	9	870	1456
MS.gene07830.t1	MTR_8g018550	80.581	860	163	1	6	861	9	868	1446
MS.gene07830.t1	MTR_8g020990	77.791	860	187	1	6	861	9	868	1423
MS.gene07830.t1	MTR_8g018690	77.146	862	186	2	6	861	9	865	1402
MS.gene07830.t1	MTR_8g018690	74.942	862	185	3	6	861	9	845	1352
MS.gene07830.t1	MTR_8g018450	76.525	869	155	8	1	861	1	828	1345
MS.gene07830.t1	MTR_2g099570	68.881	858	260	4	6	861	9	861	1249

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene07830.t1	AT1G55020	54.104	865	362	9	9	861	18	859	976
MS.gene07830.t1	AT3G22400	54.348	874	359	12	9	861	32	886	967
MS.gene07830.t1	AT1G72520	43.605	821	446	10	50	861	114	926	706
MS.gene07830.t1	AT1G17420	43.447	824	442	11	50	861	108	919	698
MS.gene07830.t1	AT3G45140	41.893	845	446	19	35	861	79	896	621
MS.gene07830.t1	AT3G45140	43.620	768	399	17	111	861	4	754	609
MS.gene07830.t1	AT1G67560	41.233	827	458	15	50	861	104	917	608

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Find 184 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGTTGATGGTTCCA+TGG	0.521970	8.3:-72153805	None:intergenic
AAAGTATACGGCATCTTTAC+CGG	0.367235	8.3:-72156887	None:intergenic
AAATATCACAGGTGGATTCA+AGG	0.457407	8.3:+72152861	MS.gene07830:CDS
AAATGCACGCACATCATCAA+AGG	0.579942	8.3:-72154662	None:intergenic
AACAAATAGGCATCTTAGTG+TGG	0.616014	8.3:+72155759	MS.gene07830:CDS
AAGCTAGATAGGCAACTCTA+CGG	0.589256	8.3:+72155128	MS.gene07830:CDS
AAGCTATCTGCCTGTGGATG+TGG	0.409669	8.3:-72155495	None:intergenic
AAGGAACTCCTCAGAACTGA+TGG	0.562150	8.3:+72154748	MS.gene07830:CDS
AAGGATCCTACTTCCCCACA+CGG	0.713360	8.3:+72156230	MS.gene07830:CDS
AAGGGTAGTCCTCTATCAGA+AGG	0.619758	8.3:-72156259	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAATGGAGCTGATACAA+AGG	+	chr8.3:72155398-72155417	MS.gene07830:CDS	30.0%
ACTCAATATATCCATATCTG+AGG	+	chr8.3:72155373-72155392	MS.gene07830:CDS	30.0%
AGAAGATTAATGCCTAAGAA+AGG	+	chr8.3:72156587-72156606	MS.gene07830:CDS	30.0%
AGTTTATAACCTTTCTTAGC+TGG	-	chr8.3:72154209-72154228	None:intergenic	30.0%
ATCATAACATACCCTATACT+AGG	-	chr8.3:72154354-72154373	None:intergenic	30.0%
CATTCATCATAGCAACAAAT+AGG	+	chr8.3:72155746-72155765	MS.gene07830:CDS	30.0%
CCATATCTGAGGAAAATAAA+TGG	+	chr8.3:72155384-72155403	MS.gene07830:CDS	30.0%
CTATAATGGTCAAGTCAATT+AGG	-	chr8.3:72156688-72156707	None:intergenic	30.0%
CTGCTGTATTATATAAGGAT+TGG	+	chr8.3:72155920-72155939	MS.gene07830:CDS	30.0%
GAACGTCAAATATAAACATG+TGG	+	chr8.3:72153380-72153399	MS.gene07830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	72152763	72156973	72152763	ID=MS.gene07830
chr8.3	mRNA	72152763	72156973	72152763	ID=MS.gene07830.t1;Parent=MS.gene07830
chr8.3	exon	72152763	72152979	72152763	ID=MS.gene07830.t1.exon1;Parent=MS.gene07830.t1
chr8.3	CDS	72152763	72152979	72152763	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72153603	72153889	72153603	ID=MS.gene07830.t1.exon2;Parent=MS.gene07830.t1
chr8.3	CDS	72153603	72153889	72153603	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72153978	72154218	72153978	ID=MS.gene07830.t1.exon3;Parent=MS.gene07830.t1
chr8.3	CDS	72153978	72154218	72153978	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72154491	72154811	72154491	ID=MS.gene07830.t1.exon4;Parent=MS.gene07830.t1
chr8.3	CDS	72154491	72154811	72154491	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72154900	72154985	72154900	ID=MS.gene07830.t1.exon5;Parent=MS.gene07830.t1
chr8.3	CDS	72154900	72154985	72154900	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72155110	72155217	72155110	ID=MS.gene07830.t1.exon6;Parent=MS.gene07830.t1
chr8.3	CDS	72155110	72155217	72155110	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72155333	72155637	72155333	ID=MS.gene07830.t1.exon7;Parent=MS.gene07830.t1
chr8.3	CDS	72155333	72155637	72155333	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72155720	72155983	72155720	ID=MS.gene07830.t1.exon8;Parent=MS.gene07830.t1
chr8.3	CDS	72155720	72155983	72155720	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1
chr8.3	exon	72156217	72156973	72156217	ID=MS.gene07830.t1.exon9;Parent=MS.gene07830.t1
chr8.3	CDS	72156217	72156973	72156217	ID=cds.MS.gene07830.t1;Parent=MS.gene07830.t1

Gene Sequence

>MS.gene07830

ATGTTTTCAAATCCATTTCACAGAAGCCAAAAGGTGAAGGGGACAGTGATATTGATGCATAGGAATGTGTTGGATATCAACGCCCTCACCGCTGGTTTAAATATCACAGGTGGATTCAAGGTTCTTGGTAATCTCACTAGCTCTATATTTGACACCTACGGTTCAATCTTGGGCCGTTCAGTGGCTCTCAGGTTGATTAGTGCTACTAGTGCTGATGGTAATTACATTTTTTTTTTACTTATAATTACTTAATCTCTCACTCTACTGTCTACAAACATAATGTTCACCACATGGATGTATACTTAACGGGTATTGTTAACTTGTGCTCTAAGGACATGTTAAACAATCCTAAAATAGAAATATTCCATTAATATTTGTGCATTCAACTAATTAAAAGTTAACAAATTAAATGCAATACACGAATTCTAACAAAAAGTTTTTACATTTGACTCATTAATCTGTGACTTGAGGGCACAAGTTAACATTTCCGGATACTCGTAACTCATTGTTATAAAACCTCTTTCTTTTTTGATACAAATATACTGTTACACTTCAATTTGCGAATATACAGTAAAAGTTCTCATATTTTAAACTCACAATTGGTTTCTATGTTTAGAGAACGTCAAATATAAACATGTGGTTCAAAGATAGACTTTACTATTTTTTTACTAAACTTTAATAAAATATTACACATGTTCTTCATTTTTTACAATTACTATAATTTCTTTAAAAAATTGTTTTAAGAGTATTTGTTAATTTTTCATTTGAGAATTATCATAATTTTTTTTTTTTTATAAATCTTTACTGAAATTGAAAAACAAACTTGTGACATATTTGTAGAAAGTGGAAAAGGTAAAGTGGGAAAGAGATCGTTTCTTGAAGGTTTTGTTACCTCCGCACCGATTCTAGGAGCTGGACAGTGTGCATACAAAGTTCATTTTCAATGGGATAGTGACATGGGAATTCCAGGAGCATTTTATATTGAGAATTTCATGCTAGGAGAATTTTTTCTTGTAAGTTTAACACTTGAAGATATTCCTAACCATGGAACCATCAACTTTGTTTGCAACTCATGGATTTACAACTGTCGAAAGTACAAAACTGAACGCATTTTCTTTGCCAACAAGGTAATTATGAAAAATATCATATTTATCTTACATCTTAAATATCTTACATTTTCCAAAATTTGACACTATTAAGTAAATATAAACATAGACATATCTTCCAAGTGAAACACCAGCTCTATTAGTCTACTATAGACAAGAAGAACTGAAGACTTTACGAGGAGATGGGACAGGTAAACGTGAAGAATGGGAAAGGATCTATGACTATGATGTCTACAATGATGTGGGTGATCCTGATAGAAAAGCTAGCTTAGCTCGTCCCGTTATTGGAGGATCCAACACCTTGCCTTACCCTCGAAGGGGGAGAACCGGCAGGAAACCAGCTAAGAAAGGTTATAAACTTTTATATTCTATTTAAACGATCAAGTTAGTATAGTATGTTTTAAGGTATTTCTGCACAAAGGAAAGTGATATGGTACAACTATATGAAATATTAATGTAACTATATAGTTAATGTTTTCATCCCTAGTATAGGGTATGTTATGATGGCATTATTTTTTTGGTTGAAAATGTGTCTTTATGTTGATCAAAATGTTTCATTTGTTTATGATTCTAAAGTCATTCTTCTTGCTAATGCATATTTTGCTATTTTGTATCTGAGCAGATCCTAAAAGTGAGAGACGGAGCGAGTATATTTATCTTCCAAGAGATGAATCATTTGGTCACTTGAAGTCTTCAGACTTTCTTGTTTACATACTTAAATCAGTATCTCAGAATGTCATACCTACATTAACATCTGCAGTTACATTACAATTCAACAAGCCAGAGTTTAACACCTTTGATGATGTGCGTGCATTTTACGAGGGTGGAATTAAATTGCATACTAATGAACTTAGCAAACTTAGCCCTATACCATTGTTCAAGGAACTCCTCAGAACTGATGGTGAAGCACCCCTTAAGTTTCCACCACCTAAAATCATTCAAGGTATCCATTAGAAACACATTTTTAGTCATGCAAAATTTGGAAAGAAATTAATTTCATAGATCTTTTATATTTCTCTTATTTTGAAAAGTGAATCAATCTGGATGGATGACTGATGAAGAATTTACAAGAGAGATGATTGCTGGTGTGAATCCTCACATTATCAAAAGAATTCAGGTAAACTTCATAGTTTAATATAATTGTTATGCAAACACCAAAACTAAAATAAGAATATTGTATCCATTTTTCATCCTAGTTTTTTAATTGTTAACCTTATTATTGCTTGATATATTTAATGTAGGAATTTCCACCAAAGAGCAAGCTAGATAGGCAACTCTACGGTGATAATACCAGCACAATAACCAAAGAACAGCTTCAACAAAACATGGGTGGGATCACAGTTGAACAAGTAATTACAAAATTTAACATCATTACTCAAAATAAATAATTTTGTTATTGTATTGCAAAATTGTTTCATTTTCATTCAATTTATTGCAATGACTAAATTATATATTTTTTAATAGGCTATCGAAACCAACAAATTGTACATACTTGATCACCATGACTCAATATATCCATATCTGAGGAAAATAAATGGAGCTGATACAAAGGCATATGCTACGAGAACCTTCCTTTTCTTACAAAATGATGGAACTTTGAAGCCGTTGGCCATTGAGCTAAGTAGCCCACATCCACAGGCAGATAGCTTTGGTCCTGTTAGTGATATTTACTTGCCTGCAAGTGATGGCGTTGAAGCTTCAATTTGGCTCCTTGCCAAGGCTTATGTAGTTGTAAACGACTCTTGCCATCACCAACTCATCAGCCATTGGTATAAATTCAATTGACAAGATTATAGAGAGTAAAACATACTTTATATATGAGTTATCCGTTAATATCTATATGTGTGACAGGTTGAACACTCATGCTGTTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCATCCTATTCATAAGCTTTTACTTCCGCACTATCGTGACACAATGAACATTAATGCACTTGCAAGGAGTGTCTTGGTAAATGCAGAGGGTGTTATTGAGAAGACGTTCTTGATGGGAAGTTATTCTCTAGAATTGTCTGCTGTATTATATAAGGATTGGGTTTTCACTGAGCAAGGTTTGCCTAATGATCTACTCAAAAGGTAACCTTACAAAACATTAGATCCTAGACATATATTCAGTAGTTAAAAAGAGGATTGAAAATTTGTTCGCAACCTCAATCTAAGATGGGATATTCAGGTTTTTAATGTCTAAACATCAATGGTTGTGGTCGCATCAACTGTATTTTGCCGCAATTTTAAACTTTCCGTTTATAATATTGATATCAAAAGTTTTTATTTTGATATTAATGATATCTTCCTTTCTTGTTATCTAGAGGTGTGGCTCTTAAGGATCCTACTTCCCCACACGGCCTTCGCCTTCTGATAGAGGACTACCCTTATGCTGCAGATGGATTAGAGATATGGGCTGTTATTAAGTCATGGGTTGAAGAATATGTGAATTTCTACTACAAGTCAGATGTAAATATTGCACAAGATTCTGAACTCCAAGCATTTTGGAAAGAACTTGTAGAGGTTGGTCACGGTGACTTGAAAAATGCAACATGGTGGGTTAAGATGCAAACTCGTACAGAGTTGATTGACACTTGCACCACCCTCATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAATATCCGTACGGAGGTTACATTCTTAACCGACCAACTAAAAGCAGAAGATTAATGCCTAAGAAAGGATCCCCCGAGTATGATGAGCTTTCTAAGAACTATCAAAAGGCGTTTTTGAGAACAATCACACCAAAAAATGACACCCTAATTGACTTGACCATTATAGAGGTCTTGTCAAGACATGCTTCTGATGAACAATACCTCGGACAGAGAATTGAAGGTGATCTTTGGACTTCTGATTCACAACCATTAGAGGCTTTCAAGAGATTTGGAACAAAGTTGGCTGAAATTGAACAAAAACTCACTCAAAGGAACAATGATGAGACTCTAAGGAATCGATATGGACCGGTAAAGATGCCGTATACTTTGCTTTATCCTTCAAGTGAGGAAGGATTGACTTGCAGAGGCATTCCAAATAGTATCTCCATCTAA

Protein sequence

>MS.gene07830.t1

MFSNPFHRSQKVKGTVILMHRNVLDINALTAGLNITGGFKVLGNLTSSIFDTYGSILGRSVALRLISATSADESGKGKVGKRSFLEGFVTSAPILGAGQCAYKVHFQWDSDMGIPGAFYIENFMLGEFFLVSLTLEDIPNHGTINFVCNSWIYNCRKYKTERIFFANKTYLPSETPALLVYYRQEELKTLRGDGTGKREEWERIYDYDVYNDVGDPDRKASLARPVIGGSNTLPYPRRGRTGRKPAKKDPKSERRSEYIYLPRDESFGHLKSSDFLVYILKSVSQNVIPTLTSAVTLQFNKPEFNTFDDVRAFYEGGIKLHTNELSKLSPIPLFKELLRTDGEAPLKFPPPKIIQVNQSGWMTDEEFTREMIAGVNPHIIKRIQEFPPKSKLDRQLYGDNTSTITKEQLQQNMGGITVEQAIETNKLYILDHHDSIYPYLRKINGADTKAYATRTFLFLQNDGTLKPLAIELSSPHPQADSFGPVSDIYLPASDGVEASIWLLAKAYVVVNDSCHHQLISHWLNTHAVVEPFIIATNRHLSVVHPIHKLLLPHYRDTMNINALARSVLVNAEGVIEKTFLMGSYSLELSAVLYKDWVFTEQGLPNDLLKRGVALKDPTSPHGLRLLIEDYPYAADGLEIWAVIKSWVEEYVNFYYKSDVNIAQDSELQAFWKELVEVGHGDLKNATWWVKMQTRTELIDTCTTLIWIASALHAAVNFGQYPYGGYILNRPTKSRRLMPKKGSPEYDELSKNYQKAFLRTITPKNDTLIDLTIIEVLSRHASDEQYLGQRIEGDLWTSDSQPLEAFKRFGTKLAEIEQKLTQRNNDETLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI