Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07905.t1 | XP_003627275.1 | 94.7 | 207 | 11 | 0 | 1 | 207 | 1 | 207 | 1.60E-102 | 382.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07905.t1 | O04012 | 53.8 | 208 | 94 | 1 | 1 | 206 | 1 | 208 | 6.8e-57 | 221.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07905.t1 | G7L6U7 | 94.7 | 207 | 11 | 0 | 1 | 207 | 1 | 207 | 1.2e-102 | 382.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene07905 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene07905 | 0.820625 | 6.21E-53 | -1.69E-46 |
| MS.gene054138 | MS.gene07905 | 0.807321 | 5.35E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene07905 | 0.802242 | 6.16E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene07905 | 0.80125 | 9.84E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene07905 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene07905 | 0.817705 | 2.87E-52 | -1.69E-46 |
| MS.gene059891 | MS.gene07905 | 0.82218 | 2.72E-53 | -1.69E-46 |
| MS.gene059892 | MS.gene07905 | 0.823421 | 1.40E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene07905 | 0.80414 | 2.49E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07905.t1 | MTR_8g020610 | 94.686 | 207 | 11 | 0 | 1 | 207 | 1 | 207 | 1.24e-142 | 396 |
| MS.gene07905.t1 | MTR_8g020590 | 58.373 | 209 | 84 | 2 | 1 | 207 | 1 | 208 | 1.11e-80 | 239 |
| MS.gene07905.t1 | MTR_8g020630 | 56.459 | 209 | 87 | 3 | 1 | 207 | 3 | 209 | 1.47e-76 | 229 |
| MS.gene07905.t1 | MTR_8g020670 | 56.796 | 206 | 85 | 3 | 4 | 207 | 6 | 209 | 4.45e-76 | 228 |
| MS.gene07905.t1 | MTR_2g041570 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 4.72e-73 | 220 |
| MS.gene07905.t1 | MTR_8g020650 | 58.333 | 192 | 76 | 3 | 18 | 207 | 20 | 209 | 9.10e-73 | 219 |
| MS.gene07905.t1 | MTR_2g041580 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 2.09e-72 | 218 |
| MS.gene07905.t1 | MTR_2g044040 | 54.067 | 209 | 92 | 3 | 1 | 207 | 3 | 209 | 3.13e-72 | 218 |
| MS.gene07905.t1 | MTR_2g041550 | 51.196 | 209 | 98 | 2 | 1 | 207 | 4 | 210 | 9.73e-72 | 217 |
| MS.gene07905.t1 | MTR_2g045100 | 53.883 | 206 | 91 | 3 | 4 | 207 | 6 | 209 | 2.14e-70 | 213 |
| MS.gene07905.t1 | MTR_3g019710 | 54.545 | 209 | 91 | 3 | 1 | 207 | 3 | 209 | 5.18e-70 | 212 |
| MS.gene07905.t1 | MTR_2g036120 | 51.923 | 208 | 96 | 3 | 1 | 206 | 3 | 208 | 6.10e-68 | 207 |
| MS.gene07905.t1 | MTR_8g020770 | 50.725 | 207 | 98 | 3 | 4 | 207 | 7 | 212 | 1.91e-66 | 203 |
| MS.gene07905.t1 | MTR_0284s0010 | 52.632 | 209 | 95 | 3 | 1 | 207 | 3 | 209 | 6.02e-66 | 202 |
| MS.gene07905.t1 | MTR_3g019650 | 52.427 | 206 | 93 | 4 | 4 | 207 | 6 | 208 | 2.81e-65 | 200 |
| MS.gene07905.t1 | MTR_4g010340 | 52.913 | 206 | 90 | 5 | 4 | 207 | 5 | 205 | 3.95e-65 | 200 |
| MS.gene07905.t1 | MTR_5g031460 | 50.239 | 209 | 100 | 3 | 1 | 207 | 3 | 209 | 2.23e-64 | 198 |
| MS.gene07905.t1 | MTR_3g019680 | 51.942 | 206 | 94 | 4 | 4 | 207 | 6 | 208 | 4.06e-64 | 197 |
| MS.gene07905.t1 | MTR_7g011340 | 53.093 | 194 | 87 | 3 | 16 | 207 | 18 | 209 | 3.38e-61 | 190 |
| MS.gene07905.t1 | MTR_3g073170 | 51.337 | 187 | 87 | 4 | 22 | 207 | 27 | 210 | 1.84e-59 | 186 |
| MS.gene07905.t1 | MTR_2g019780 | 49.048 | 210 | 100 | 5 | 2 | 207 | 6 | 212 | 1.91e-59 | 186 |
| MS.gene07905.t1 | MTR_8g020760 | 49.519 | 208 | 101 | 3 | 2 | 207 | 6 | 211 | 4.97e-58 | 182 |
| MS.gene07905.t1 | MTR_8g020750 | 45.894 | 207 | 108 | 3 | 4 | 207 | 7 | 212 | 1.06e-57 | 181 |
| MS.gene07905.t1 | MTR_3g019810 | 45.813 | 203 | 100 | 4 | 1 | 201 | 109 | 303 | 1.04e-51 | 169 |
| MS.gene07905.t1 | MTR_8g020763 | 46.995 | 183 | 94 | 2 | 27 | 207 | 9 | 190 | 1.61e-51 | 164 |
| MS.gene07905.t1 | MTR_1g060120 | 37.500 | 192 | 106 | 5 | 20 | 200 | 30 | 218 | 1.30e-36 | 127 |
| MS.gene07905.t1 | MTR_1g085140 | 37.838 | 185 | 109 | 4 | 22 | 201 | 30 | 213 | 2.27e-34 | 122 |
| MS.gene07905.t1 | MTR_4g027415 | 49.606 | 127 | 60 | 3 | 16 | 140 | 18 | 142 | 6.17e-33 | 115 |
| MS.gene07905.t1 | MTR_2g072560 | 51.351 | 111 | 51 | 2 | 4 | 112 | 6 | 115 | 7.80e-32 | 113 |
| MS.gene07905.t1 | MTR_1g112200 | 34.737 | 190 | 115 | 4 | 20 | 206 | 27 | 210 | 8.90e-32 | 115 |
| MS.gene07905.t1 | MTR_7g111240 | 37.975 | 158 | 96 | 1 | 22 | 177 | 26 | 183 | 1.21e-30 | 112 |
| MS.gene07905.t1 | MTR_6g005360 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 2.71e-30 | 111 |
| MS.gene07905.t1 | MTR_6g005330 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 3.98e-30 | 110 |
| MS.gene07905.t1 | MTR_6g005310 | 39.474 | 190 | 105 | 6 | 22 | 203 | 28 | 215 | 5.09e-30 | 110 |
| MS.gene07905.t1 | MTR_7g111240 | 37.975 | 158 | 93 | 2 | 22 | 177 | 26 | 180 | 1.38e-29 | 109 |
| MS.gene07905.t1 | MTR_5g036570 | 33.333 | 189 | 121 | 3 | 22 | 205 | 33 | 221 | 1.86e-29 | 109 |
| MS.gene07905.t1 | MTR_1g079490 | 37.838 | 185 | 104 | 5 | 3 | 177 | 6 | 189 | 2.26e-29 | 108 |
| MS.gene07905.t1 | MTR_6g005340 | 38.947 | 190 | 106 | 6 | 22 | 203 | 28 | 215 | 3.29e-29 | 108 |
| MS.gene07905.t1 | MTR_2g031270 | 35.638 | 188 | 112 | 4 | 22 | 203 | 29 | 213 | 1.35e-28 | 107 |
| MS.gene07905.t1 | MTR_2g030855 | 34.555 | 191 | 116 | 4 | 19 | 203 | 25 | 212 | 4.08e-28 | 105 |
| MS.gene07905.t1 | MTR_1g023770 | 35.468 | 203 | 118 | 5 | 8 | 203 | 13 | 209 | 6.01e-28 | 105 |
| MS.gene07905.t1 | MTR_1g085500 | 32.240 | 183 | 120 | 2 | 22 | 200 | 29 | 211 | 6.36e-28 | 105 |
| MS.gene07905.t1 | MTR_3g019610 | 50.000 | 102 | 48 | 2 | 4 | 103 | 6 | 106 | 3.48e-27 | 100 |
| MS.gene07905.t1 | MTR_2g019250 | 34.286 | 210 | 125 | 7 | 1 | 200 | 7 | 213 | 5.96e-27 | 102 |
| MS.gene07905.t1 | MTR_4g017040 | 35.829 | 187 | 109 | 6 | 1 | 179 | 7 | 190 | 7.60e-27 | 102 |
| MS.gene07905.t1 | MTR_4g017050 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 1.08e-26 | 102 |
| MS.gene07905.t1 | MTR_5g046410 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 1.29e-26 | 102 |
| MS.gene07905.t1 | MTR_5g046430 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 1.29e-26 | 102 |
| MS.gene07905.t1 | MTR_4g017030 | 33.810 | 210 | 126 | 7 | 1 | 200 | 7 | 213 | 1.29e-26 | 102 |
| MS.gene07905.t1 | MTR_2g030895 | 35.465 | 172 | 104 | 4 | 39 | 203 | 7 | 178 | 3.50e-25 | 97.1 |
| MS.gene07905.t1 | MTR_8g007300 | 32.308 | 195 | 126 | 4 | 2 | 191 | 11 | 204 | 5.06e-25 | 97.8 |
| MS.gene07905.t1 | MTR_6g005380 | 36.571 | 175 | 101 | 6 | 1 | 167 | 6 | 178 | 2.56e-24 | 95.5 |
| MS.gene07905.t1 | MTR_2g030865 | 34.884 | 172 | 105 | 4 | 39 | 203 | 7 | 178 | 1.15e-23 | 93.2 |
| MS.gene07905.t1 | MTR_3g096330 | 37.255 | 153 | 77 | 3 | 29 | 167 | 584 | 731 | 1.98e-22 | 94.7 |
| MS.gene07905.t1 | MTR_6g005350 | 33.333 | 189 | 117 | 6 | 22 | 203 | 28 | 214 | 2.06e-21 | 88.2 |
| MS.gene07905.t1 | MTR_2g086620 | 32.353 | 170 | 109 | 3 | 38 | 203 | 37 | 204 | 3.45e-20 | 84.7 |
| MS.gene07905.t1 | MTR_2g086630 | 31.765 | 170 | 110 | 3 | 38 | 203 | 37 | 204 | 1.20e-19 | 83.2 |
| MS.gene07905.t1 | MTR_4g052780 | 33.136 | 169 | 110 | 2 | 38 | 203 | 37 | 205 | 3.31e-19 | 82.0 |
| MS.gene07905.t1 | MTR_4g052770 | 33.136 | 169 | 110 | 2 | 38 | 203 | 37 | 205 | 4.35e-19 | 81.6 |
| MS.gene07905.t1 | MTR_2g086640 | 34.074 | 135 | 88 | 1 | 70 | 203 | 69 | 203 | 5.55e-19 | 81.6 |
| MS.gene07905.t1 | MTR_2g031300 | 32.500 | 160 | 82 | 4 | 39 | 192 | 7 | 146 | 1.38e-16 | 73.9 |
| MS.gene07905.t1 | MTR_2g096110 | 30.469 | 128 | 73 | 2 | 41 | 167 | 7 | 119 | 1.39e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07905.t1 | AT1G72610 | 53.368 | 193 | 88 | 1 | 17 | 207 | 16 | 208 | 5.13e-72 | 218 |
| MS.gene07905.t1 | AT5G20630 | 50.000 | 208 | 101 | 2 | 1 | 206 | 4 | 210 | 2.64e-68 | 208 |
| MS.gene07905.t1 | AT1G18980 | 37.073 | 205 | 125 | 2 | 3 | 203 | 14 | 218 | 1.10e-42 | 143 |
| MS.gene07905.t1 | AT1G18970 | 35.122 | 205 | 129 | 2 | 1 | 203 | 16 | 218 | 2.52e-39 | 134 |
| MS.gene07905.t1 | AT3G04200 | 40.838 | 191 | 105 | 4 | 22 | 204 | 33 | 223 | 8.38e-39 | 133 |
| MS.gene07905.t1 | AT5G26700 | 37.438 | 203 | 117 | 5 | 4 | 200 | 8 | 206 | 7.58e-35 | 123 |
| MS.gene07905.t1 | AT3G05930 | 37.363 | 182 | 110 | 3 | 2 | 179 | 8 | 189 | 8.05e-35 | 123 |
| MS.gene07905.t1 | AT1G09560 | 36.022 | 186 | 115 | 2 | 22 | 203 | 30 | 215 | 2.87e-33 | 119 |
| MS.gene07905.t1 | AT5G38960 | 37.306 | 193 | 110 | 7 | 22 | 204 | 32 | 223 | 6.10e-32 | 115 |
| MS.gene07905.t1 | AT3G10080 | 34.715 | 193 | 114 | 5 | 20 | 203 | 30 | 219 | 1.47e-31 | 115 |
| MS.gene07905.t1 | AT1G02335 | 35.443 | 158 | 100 | 1 | 22 | 177 | 30 | 187 | 1.76e-31 | 114 |
| MS.gene07905.t1 | AT3G04150 | 34.112 | 214 | 133 | 4 | 2 | 207 | 12 | 225 | 2.13e-31 | 114 |
| MS.gene07905.t1 | AT3G10080 | 34.715 | 193 | 114 | 5 | 20 | 203 | 101 | 290 | 8.28e-31 | 114 |
| MS.gene07905.t1 | AT3G04150 | 32.159 | 227 | 133 | 4 | 2 | 207 | 12 | 238 | 2.34e-30 | 112 |
| MS.gene07905.t1 | AT3G62020 | 30.918 | 207 | 138 | 3 | 3 | 204 | 10 | 216 | 2.55e-30 | 111 |
| MS.gene07905.t1 | AT3G05950 | 37.895 | 190 | 110 | 4 | 22 | 203 | 32 | 221 | 3.10e-30 | 111 |
| MS.gene07905.t1 | AT5G61750 | 34.091 | 176 | 100 | 3 | 2 | 167 | 5 | 174 | 3.23e-30 | 110 |
| MS.gene07905.t1 | AT5G39110 | 34.579 | 214 | 127 | 5 | 3 | 203 | 7 | 220 | 1.54e-29 | 109 |
| MS.gene07905.t1 | AT1G74820 | 32.558 | 172 | 110 | 1 | 1 | 166 | 15 | 186 | 1.77e-29 | 109 |
| MS.gene07905.t1 | AT5G38910 | 33.971 | 209 | 128 | 5 | 4 | 203 | 12 | 219 | 1.70e-28 | 107 |
| MS.gene07905.t1 | AT3G04190 | 36.649 | 191 | 111 | 6 | 22 | 203 | 32 | 221 | 2.57e-28 | 106 |
| MS.gene07905.t1 | AT5G38940 | 34.737 | 190 | 116 | 4 | 22 | 203 | 32 | 221 | 3.62e-28 | 105 |
| MS.gene07905.t1 | AT5G39160 | 34.896 | 192 | 111 | 5 | 22 | 204 | 30 | 216 | 4.34e-28 | 105 |
| MS.gene07905.t1 | AT5G38940 | 34.737 | 190 | 116 | 4 | 22 | 203 | 56 | 245 | 6.28e-28 | 105 |
| MS.gene07905.t1 | AT5G39160 | 34.896 | 192 | 115 | 5 | 22 | 204 | 30 | 220 | 9.52e-28 | 105 |
| MS.gene07905.t1 | AT5G39190 | 34.896 | 192 | 115 | 5 | 22 | 204 | 30 | 220 | 1.15e-27 | 104 |
| MS.gene07905.t1 | AT5G38930 | 34.737 | 190 | 116 | 5 | 22 | 203 | 32 | 221 | 1.79e-27 | 104 |
| MS.gene07905.t1 | AT5G39120 | 32.243 | 214 | 133 | 6 | 1 | 203 | 7 | 219 | 2.75e-27 | 103 |
| MS.gene07905.t1 | AT5G39130 | 33.488 | 215 | 129 | 6 | 3 | 204 | 7 | 220 | 1.61e-26 | 101 |
| MS.gene07905.t1 | AT5G39150 | 30.986 | 213 | 136 | 5 | 1 | 203 | 8 | 219 | 2.67e-26 | 101 |
| MS.gene07905.t1 | AT3G62020 | 31.609 | 174 | 114 | 3 | 35 | 203 | 13 | 186 | 3.02e-26 | 100 |
| MS.gene07905.t1 | AT5G39180 | 30.986 | 213 | 136 | 5 | 1 | 203 | 8 | 219 | 3.92e-26 | 100 |
| MS.gene07905.t1 | AT3G04180 | 35.204 | 196 | 107 | 7 | 22 | 203 | 32 | 221 | 1.01e-25 | 99.8 |
| MS.gene07905.t1 | AT4G14630 | 34.762 | 210 | 125 | 7 | 5 | 203 | 14 | 222 | 1.26e-25 | 99.4 |
| MS.gene07905.t1 | AT3G04170 | 36.082 | 194 | 105 | 8 | 22 | 203 | 32 | 218 | 1.57e-24 | 96.7 |
| MS.gene07905.t1 | AT1G10460 | 34.568 | 162 | 99 | 4 | 22 | 176 | 25 | 186 | 6.16e-24 | 94.7 |
| MS.gene07905.t1 | AT5G39160 | 35.065 | 154 | 94 | 3 | 56 | 204 | 46 | 198 | 2.13e-23 | 93.2 |
| MS.gene07905.t1 | AT5G39190 | 35.065 | 154 | 94 | 3 | 56 | 204 | 46 | 198 | 2.20e-23 | 93.2 |
Find 28 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAATTTCCTGCTGTTAA+TGG | 0.167755 | 8.3:-70537608 | MS.gene07905:CDS |
| GTTTACTCCAACTTCAATTC+AGG | 0.252771 | 8.3:-70537680 | MS.gene07905:CDS |
| ATTCTTGATCTTGCTTTGTT+TGG | 0.254800 | 8.3:-70537317 | MS.gene07905:CDS |
| ACTTTCTAAAGGTCAAATTT+TGG | 0.284643 | 8.3:-70537435 | MS.gene07905:CDS |
| TTTCCTGCTGTTAATGGTCT+TGG | 0.310444 | 8.3:-70537602 | MS.gene07905:CDS |
| TCTTCTCCACAAACCCCTTC+AGG | 0.334680 | 8.3:-70537740 | MS.gene07905:CDS |
| TGGTTTATCAGCAGCAAGAT+TGG | 0.394978 | 8.3:-70537582 | MS.gene07905:CDS |
| TAATACAGAAGCATTGGTTA+TGG | 0.446790 | 8.3:+70537784 | None:intergenic |
| GGGTAGCCTGAAGGGGTTTG+TGG | 0.451614 | 8.3:+70537734 | None:intergenic |
| GCATTCACATCGCGGCGCTT+CGG | 0.455830 | 8.3:-70537531 | MS.gene07905:CDS |
| GGAAATTGATTAACAGATGC+AGG | 0.477175 | 8.3:+70537620 | None:intergenic |
| TTTATCAAGACACTTTCTAA+AGG | 0.499284 | 8.3:-70537446 | MS.gene07905:CDS |
| GCAAGATTGGACTTCGAGGT+TGG | 0.499476 | 8.3:-70537569 | MS.gene07905:CDS |
| CGCTTCGGAGTTAATGATTG+TGG | 0.511937 | 8.3:-70537516 | MS.gene07905:CDS |
| GAAGTCTAATACAGAAGCAT+TGG | 0.518908 | 8.3:+70537778 | None:intergenic |
| AGTGTTTCCTGAATTGAAGT+TGG | 0.520987 | 8.3:+70537673 | None:intergenic |
| GTACAAGGTCGTATAACTGC+TGG | 0.537303 | 8.3:-70537494 | MS.gene07905:CDS |
| AGATCAAGAATTTGTGAACC+AGG | 0.540464 | 8.3:+70537329 | None:intergenic |
| TTTGCATGGGTAGCCTGAAG+GGG | 0.553451 | 8.3:+70537727 | None:intergenic |
| AGATTGGACTTCGAGGTTGG+AGG | 0.573052 | 8.3:-70537566 | MS.gene07905:CDS |
| GCGCCGCGATGTGAATGCAT+TGG | 0.582043 | 8.3:+70537536 | None:intergenic |
| AGCAGCAAGATTGGACTTCG+AGG | 0.583902 | 8.3:-70537573 | MS.gene07905:CDS |
| AAACCAAGACCATTAACAGC+AGG | 0.584052 | 8.3:+70537599 | None:intergenic |
| GAGTTAATGATTGTGGTACA+AGG | 0.597384 | 8.3:-70537509 | MS.gene07905:CDS |
| GATCAAGAATTTGTGAACCA+GGG | 0.620980 | 8.3:+70537330 | None:intergenic |
| AATGTGAGAGAAGAGTTAAG+AGG | 0.621704 | 8.3:+70537807 | None:intergenic |
| TGAAAATGCAACAAACCTTG+TGG | 0.665243 | 8.3:+70537407 | None:intergenic |
| ATACCAATGCATTCACATCG+CGG | 0.682883 | 8.3:-70537539 | MS.gene07905:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTATCAAGACACTTTCTAA+AGG | - | chr8.3:70537601-70537620 | MS.gene07905:CDS | 25.0% |
| !! | ATTTTCAATATAATGCTGGA+AGG | - | chr8.3:70537656-70537675 | MS.gene07905:CDS | 25.0% |
| !! | TTGCATTTTCAATATAATGC+TGG | - | chr8.3:70537652-70537671 | MS.gene07905:CDS | 25.0% |
| !!! | AAAAAGCTTAAGGCTATTTT+TGG | - | chr8.3:70537811-70537830 | MS.gene07905:CDS | 25.0% |
| !!! | ACTTTCTAAAGGTCAAATTT+TGG | - | chr8.3:70537612-70537631 | MS.gene07905:CDS | 25.0% |
| !!! | ATTGTTACTGATTTTTTGCA+TGG | + | chr8.3:70537337-70537356 | None:intergenic | 25.0% |
| !!! | TTGTTACTGATTTTTTGCAT+GGG | + | chr8.3:70537336-70537355 | None:intergenic | 25.0% |
| AATCAATTTCCTGCTGTTAA+TGG | - | chr8.3:70537439-70537458 | MS.gene07905:CDS | 30.0% | |
| TGCTCAAGTTAAAAAGCTTA+AGG | - | chr8.3:70537801-70537820 | MS.gene07905:CDS | 30.0% | |
| ! | ATTCTTGATCTTGCTTTGTT+TGG | - | chr8.3:70537730-70537749 | MS.gene07905:CDS | 30.0% |
| !! | TAATACAGAAGCATTGGTTA+TGG | + | chr8.3:70537266-70537285 | None:intergenic | 30.0% |
| !!! | TTAAGCTTTTTAACTTGAGC+AGG | + | chr8.3:70537802-70537821 | None:intergenic | 30.0% |
| AATGTGAGAGAAGAGTTAAG+AGG | + | chr8.3:70537243-70537262 | None:intergenic | 35.0% | |
| AGATCAAGAATTTGTGAACC+AGG | + | chr8.3:70537721-70537740 | None:intergenic | 35.0% | |
| AGTGTTTCCTGAATTGAAGT+TGG | + | chr8.3:70537377-70537396 | None:intergenic | 35.0% | |
| GAGTTAATGATTGTGGTACA+AGG | - | chr8.3:70537538-70537557 | MS.gene07905:CDS | 35.0% | |
| GATCAAGAATTTGTGAACCA+GGG | + | chr8.3:70537720-70537739 | None:intergenic | 35.0% | |
| GGAAATTGATTAACAGATGC+AGG | + | chr8.3:70537430-70537449 | None:intergenic | 35.0% | |
| GTTTACTCCAACTTCAATTC+AGG | - | chr8.3:70537367-70537386 | MS.gene07905:CDS | 35.0% | |
| TGAAAATGCAACAAACCTTG+TGG | + | chr8.3:70537643-70537662 | None:intergenic | 35.0% | |
| ! | GAAGTCTAATACAGAAGCAT+TGG | + | chr8.3:70537272-70537291 | None:intergenic | 35.0% |
| !!! | AAGCTTAAGGCTATTTTTGG+TGG | - | chr8.3:70537814-70537833 | MS.gene07905:CDS | 35.0% |
| !!! | AGCTTAAGGCTATTTTTGGT+GGG | - | chr8.3:70537815-70537834 | MS.gene07905:CDS | 35.0% |
| AAACCAAGACCATTAACAGC+AGG | + | chr8.3:70537451-70537470 | None:intergenic | 40.0% | |
| ATACCAATGCATTCACATCG+CGG | - | chr8.3:70537508-70537527 | MS.gene07905:CDS | 40.0% | |
| TGGTTTATCAGCAGCAAGAT+TGG | - | chr8.3:70537465-70537484 | MS.gene07905:CDS | 40.0% | |
| TTTCCTGCTGTTAATGGTCT+TGG | - | chr8.3:70537445-70537464 | MS.gene07905:CDS | 40.0% | |
| ! | ACTTTTAGTAGTGAGAACCC+TGG | - | chr8.3:70537700-70537719 | MS.gene07905:CDS | 40.0% |
| !!! | CAAATTTTGGCTCTACCACA+AGG | - | chr8.3:70537625-70537644 | MS.gene07905:CDS | 40.0% |
| CGCTTCGGAGTTAATGATTG+TGG | - | chr8.3:70537531-70537550 | MS.gene07905:CDS | 45.0% | |
| GTACAAGGTCGTATAACTGC+TGG | - | chr8.3:70537553-70537572 | MS.gene07905:CDS | 45.0% | |
| ! | TTTTGCATGGGTAGCCTGAA+GGG | + | chr8.3:70537324-70537343 | None:intergenic | 45.0% |
| ! | TTTTTGCATGGGTAGCCTGA+AGG | + | chr8.3:70537325-70537344 | None:intergenic | 45.0% |
| !!! | AAGGCTATTTTTGGTGGGAG+TGG | - | chr8.3:70537820-70537839 | MS.gene07905:CDS | 45.0% |
| AGATTGGACTTCGAGGTTGG+AGG | - | chr8.3:70537481-70537500 | MS.gene07905:CDS | 50.0% | |
| AGCAGCAAGATTGGACTTCG+AGG | - | chr8.3:70537474-70537493 | MS.gene07905:CDS | 50.0% | |
| GCAAGATTGGACTTCGAGGT+TGG | - | chr8.3:70537478-70537497 | MS.gene07905:CDS | 50.0% | |
| TCTTCTCCACAAACCCCTTC+AGG | - | chr8.3:70537307-70537326 | MS.gene07905:CDS | 50.0% | |
| TTTGCATGGGTAGCCTGAAG+GGG | + | chr8.3:70537323-70537342 | None:intergenic | 50.0% | |
| GCATTCACATCGCGGCGCTT+CGG | - | chr8.3:70537516-70537535 | MS.gene07905:CDS | 60.0% | |
| GCGCCGCGATGTGAATGCAT+TGG | + | chr8.3:70537514-70537533 | None:intergenic | 60.0% | |
| GGGTAGCCTGAAGGGGTTTG+TGG | + | chr8.3:70537316-70537335 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 70537223 | 70537846 | 70537223 | ID=MS.gene07905 |
| chr8.3 | mRNA | 70537223 | 70537846 | 70537223 | ID=MS.gene07905.t1;Parent=MS.gene07905 |
| chr8.3 | exon | 70537223 | 70537846 | 70537223 | ID=MS.gene07905.t1.exon1;Parent=MS.gene07905.t1 |
| chr8.3 | CDS | 70537223 | 70537846 | 70537223 | ID=cds.MS.gene07905.t1;Parent=MS.gene07905.t1 |
| Gene Sequence |
| Protein sequence |
