Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08930.t1 | XP_003629706.1 | 70.6 | 479 | 8 | 3 | 1 | 346 | 1 | 479 | 6.00E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08930.t1 | Q9LHN7 | 42.8 | 465 | 132 | 4 | 11 | 344 | 4 | 465 | 6.5e-84 | 312.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08930.t1 | G7LHY8 | 70.6 | 479 | 8 | 3 | 1 | 346 | 1 | 479 | 4.3e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene08930 | 0.803562 | 3.29E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene08930 | 0.806891 | 6.60E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene08930 | 0.840543 | 8.16E-58 | -1.69E-46 |
| MS.gene050680 | MS.gene08930 | 0.812421 | 4.28E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene08930 | 0.819122 | 1.37E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene08930 | 0.849993 | 2.26E-60 | -1.69E-46 |
| MS.gene052333 | MS.gene08930 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene052389 | MS.gene08930 | 0.814498 | 1.49E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene08930 | 0.800013 | 1.76E-48 | -1.69E-46 |
| MS.gene055225 | MS.gene08930 | 0.803357 | 3.62E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene08930 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene055701 | MS.gene08930 | 0.840078 | 1.08E-57 | -1.69E-46 |
| MS.gene056087 | MS.gene08930 | 0.810279 | 1.25E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene08930 | 0.809406 | 1.92E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene08930 | 0.811446 | 6.97E-51 | -1.69E-46 |
| MS.gene059247 | MS.gene08930 | 0.804601 | 2.00E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene08930 | 0.801487 | 8.80E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene08930 | -0.814784 | 1.29E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08930.t1 | MTR_8g085630 | 69.409 | 474 | 12 | 4 | 1 | 341 | 1 | 474 | 0.0 | 592 |
| MS.gene08930.t1 | MTR_5g064750 | 43.146 | 445 | 115 | 5 | 35 | 346 | 20 | 459 | 2.80e-101 | 306 |
| MS.gene08930.t1 | MTR_5g026780 | 34.852 | 439 | 155 | 3 | 28 | 335 | 18 | 456 | 1.51e-82 | 259 |
| MS.gene08930.t1 | MTR_5g026780 | 34.852 | 439 | 155 | 3 | 28 | 335 | 34 | 472 | 1.71e-82 | 259 |
| MS.gene08930.t1 | MTR_1g112950 | 35.227 | 440 | 155 | 3 | 26 | 335 | 12 | 451 | 1.69e-81 | 256 |
| MS.gene08930.t1 | MTR_0031s0060 | 35.167 | 418 | 165 | 5 | 34 | 345 | 134 | 551 | 2.34e-73 | 240 |
| MS.gene08930.t1 | MTR_5g005160 | 35.402 | 435 | 150 | 4 | 33 | 336 | 3 | 437 | 1.79e-64 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08930.t1 | AT3G13620 | 41.756 | 467 | 138 | 5 | 11 | 346 | 4 | 467 | 1.95e-105 | 318 |
| MS.gene08930.t1 | AT1G31830 | 35.189 | 449 | 161 | 3 | 28 | 346 | 21 | 469 | 1.72e-87 | 271 |
| MS.gene08930.t1 | AT1G31830 | 35.189 | 449 | 161 | 3 | 28 | 346 | 37 | 485 | 1.77e-87 | 272 |
| MS.gene08930.t1 | AT5G05630 | 35.080 | 439 | 153 | 3 | 29 | 335 | 42 | 480 | 1.51e-81 | 256 |
| MS.gene08930.t1 | AT1G31820 | 35.619 | 452 | 154 | 4 | 34 | 348 | 30 | 481 | 1.67e-81 | 256 |
| MS.gene08930.t1 | AT3G19553 | 37.313 | 469 | 150 | 8 | 18 | 346 | 4 | 468 | 3.43e-73 | 234 |
Find 68 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACTTTCTTAACATTCTT+AGG | 0.151243 | 4.4:-14486993 | MS.gene08930:CDS |
| CTCATCTACTTTGAGGTATC+TGG | 0.167645 | 4.4:-14488175 | MS.gene08930:CDS |
| AAGGTTCCACTTGGATTATT+TGG | 0.196544 | 4.4:-14487095 | MS.gene08930:CDS |
| TCTGGAATACTCCAAATAAA+TGG | 0.207381 | 4.4:+14488079 | None:intergenic |
| CTGGGAATTGGTTGAAATAT+TGG | 0.212399 | 4.4:-14487424 | MS.gene08930:CDS |
| TTGGATCTTCTTCTTCTCTT+TGG | 0.215166 | 4.4:+14488248 | None:intergenic |
| TGCTGGATTGTTAACTTGTT+TGG | 0.222119 | 4.4:-14487543 | MS.gene08930:CDS |
| ACTAGCCACAAATACAATTT+TGG | 0.228986 | 4.4:+14487013 | None:intergenic |
| TACAATGAAACGACCTTATA+AGG | 0.253963 | 4.4:-14487114 | MS.gene08930:CDS |
| TTGAAATATTGGATGGAAAT+TGG | 0.269249 | 4.4:-14487413 | MS.gene08930:CDS |
| GGTTATACTGCAGTTGGTTT+AGG | 0.285281 | 4.4:-14487782 | MS.gene08930:CDS |
| AATCCAAGTGGAACCTTATA+AGG | 0.308677 | 4.4:+14487101 | None:intergenic |
| TGCCACTTGATCAAGAAGTT+TGG | 0.318408 | 4.4:-14487484 | MS.gene08930:CDS |
| CTGGTTTGATTGCTGGGAAT+TGG | 0.320667 | 4.4:-14487436 | MS.gene08930:CDS |
| GGGTTATATAATTCCTTTGT+TGG | 0.320719 | 4.4:-14487522 | MS.gene08930:CDS |
| CAATGGAGTAGGAGATAAAT+TGG | 0.322700 | 4.4:-14486916 | MS.gene08930:CDS |
| GCCACTTGATCAAGAAGTTT+GGG | 0.332993 | 4.4:-14487483 | MS.gene08930:CDS |
| CATGTGGCTGGTTTGATTGC+TGG | 0.333123 | 4.4:-14487443 | MS.gene08930:CDS |
| GTATAGTTTAGGGATGCTTT+TGG | 0.333266 | 4.4:-14487174 | MS.gene08930:intron |
| GCTGGATTGTTAACTTGTTT+GGG | 0.336043 | 4.4:-14487542 | MS.gene08930:CDS |
| AATCTTTCTCATCTACTTTG+AGG | 0.359694 | 4.4:-14488182 | MS.gene08930:CDS |
| TAAACCAGAATAATTCAAAA+AGG | 0.378273 | 4.4:+14487814 | None:intergenic |
| GAGGTATCTGGTGGACCTTA+TGG | 0.387052 | 4.4:-14488163 | MS.gene08930:CDS |
| TTATAAGGTCGTTTCATTGT+AGG | 0.398852 | 4.4:+14487116 | None:intergenic |
| TGCTACCAAAATTGTATTTG+TGG | 0.406271 | 4.4:-14487018 | MS.gene08930:CDS |
| ATAACAAACCCACCATTTCC+AGG | 0.406978 | 4.4:+14488022 | None:intergenic |
| TATAAGGTCGTTTCATTGTA+GGG | 0.413037 | 4.4:+14487117 | None:intergenic |
| GTTTAGAAGATGTTGATGAT+AGG | 0.416793 | 4.4:+14488270 | None:intergenic |
| ATTCCTTTGTTGGCTACTAC+CGG | 0.417944 | 4.4:-14487512 | MS.gene08930:CDS |
| ATGTGGCTGGTTTGATTGCT+GGG | 0.424967 | 4.4:-14487442 | MS.gene08930:CDS |
| GTACTTTCTTAACATTCTTA+GGG | 0.425423 | 4.4:-14486992 | MS.gene08930:CDS |
| TATTCTGGTTTAGCTATAGT+TGG | 0.426561 | 4.4:-14487803 | MS.gene08930:CDS |
| CTGGAATACTCCAAATAAAT+GGG | 0.440921 | 4.4:+14488080 | None:intergenic |
| TCCTTTGTTGGCTACTACCG+GGG | 0.443324 | 4.4:-14487510 | MS.gene08930:CDS |
| ACATTAACACAAAGGGCAAA+AGG | 0.443673 | 4.4:+14487750 | None:intergenic |
| ACTGTTGCTTCTTCACCATA+AGG | 0.446104 | 4.4:+14488148 | None:intergenic |
| TCTGCAGTTAAAAGAGCCTC+TGG | 0.446328 | 4.4:+14488061 | None:intergenic |
| GCTACAACATTCCCTGGAAA+TGG | 0.446788 | 4.4:-14488034 | MS.gene08930:intron |
| AAGTAGATGAGAAAGATTAG+AGG | 0.454596 | 4.4:+14488187 | None:intergenic |
| TGAATCTTTGTAAGTCTAAG+AGG | 0.460463 | 4.4:-14486950 | MS.gene08930:CDS |
| TTCCTTTGTTGGCTACTACC+GGG | 0.460814 | 4.4:-14487511 | MS.gene08930:CDS |
| CGACCTTATAAGGTTCCACT+TGG | 0.461269 | 4.4:-14487104 | MS.gene08930:CDS |
| CTAAAATTGATCCTAGTAGA+TGG | 0.462759 | 4.4:-14487712 | MS.gene08930:intron |
| ATCAAAGACATTAACACAAA+GGG | 0.476966 | 4.4:+14487743 | None:intergenic |
| CCTAAACTTAACCATCTACT+AGG | 0.478755 | 4.4:+14487701 | None:intergenic |
| ATCAAGAAGTTTGGGTTGGT+GGG | 0.495054 | 4.4:-14487475 | MS.gene08930:CDS |
| GATCAAGAAGTTTGGGTTGG+TGG | 0.497496 | 4.4:-14487476 | MS.gene08930:CDS |
| CATTAACACAAAGGGCAAAA+GGG | 0.503892 | 4.4:+14487751 | None:intergenic |
| GATAGTGCTAGTACTTTAGC+TGG | 0.506350 | 4.4:-14487611 | MS.gene08930:intron |
| ATAGTTGGTTATACTGCAGT+TGG | 0.509080 | 4.4:-14487788 | MS.gene08930:CDS |
| GAAGCAACAGTAAGTGCTGC+AGG | 0.513783 | 4.4:-14488136 | MS.gene08930:CDS |
| AGTAGATGAGAAAGATTAGA+GGG | 0.514522 | 4.4:+14488188 | None:intergenic |
| GAATTAGCTACAACATTCCC+TGG | 0.531597 | 4.4:-14488040 | MS.gene08930:CDS |
| ACATAAACCAACAGCACAGA+TGG | 0.538480 | 4.4:+14487050 | None:intergenic |
| CTTGATCAAGAAGTTTGGGT+TGG | 0.540498 | 4.4:-14487479 | MS.gene08930:CDS |
| TGGATTGAATTCAATGGAGT+AGG | 0.540871 | 4.4:-14486927 | MS.gene08930:CDS |
| TTGCTTCTTTCCTTAAGTTG+AGG | 0.541531 | 4.4:-14487148 | MS.gene08930:CDS |
| AAGAGGTGGATTGAATTCAA+TGG | 0.542090 | 4.4:-14486933 | MS.gene08930:CDS |
| ATCTACTTTGAGGTATCTGG+TGG | 0.545094 | 4.4:-14488172 | MS.gene08930:CDS |
| ACCCAAACTTCTTGATCAAG+TGG | 0.548962 | 4.4:+14487482 | None:intergenic |
| TTGATCAAGTGGCATAGCCC+CGG | 0.575447 | 4.4:+14487493 | None:intergenic |
| TAACAAACCCACCATTTCCA+GGG | 0.582040 | 4.4:+14488023 | None:intergenic |
| ATCAAACCAAATAATCCAAG+TGG | 0.590306 | 4.4:+14487089 | None:intergenic |
| GAATTGGTTGAAATATTGGA+TGG | 0.593097 | 4.4:-14487420 | MS.gene08930:CDS |
| ATCTTTGTAAGTCTAAGAGG+TGG | 0.616056 | 4.4:-14486947 | MS.gene08930:CDS |
| ATTTATTTGGAGTATTCCAG+AGG | 0.619283 | 4.4:-14488077 | MS.gene08930:CDS |
| AATCAAAGACATTAACACAA+AGG | 0.619734 | 4.4:+14487742 | None:intergenic |
| GCCCCGGTAGTAGCCAACAA+AGG | 0.665760 | 4.4:+14487509 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTGTATAGTTTA+GGG | - | chr4.4:14488022-14488041 | MS.gene08930:intron | 10.0% |
| !!! | TTTTTTTCAATACTATTTTT+TGG | - | chr4.4:14487557-14487576 | MS.gene08930:CDS | 10.0% |
| !!! | GTTAATTTTTTGTATAGTTT+AGG | - | chr4.4:14488021-14488040 | MS.gene08930:intron | 15.0% |
| !!! | TTATAATTTTCCCATTTATT+TGG | - | chr4.4:14487116-14487135 | MS.gene08930:CDS | 15.0% |
| !! | ACTATACAAAAAATTAACAG+TGG | + | chr4.4:14488019-14488038 | None:intergenic | 20.0% |
| !! | AGATAATCTATACATAGAAT+TGG | + | chr4.4:14487298-14487317 | None:intergenic | 20.0% |
| !! | ATTTCAACAATAATATCACT+TGG | - | chr4.4:14487961-14487980 | MS.gene08930:intron | 20.0% |
| !! | GATAATCTATACATAGAATT+GGG | + | chr4.4:14487297-14487316 | None:intergenic | 20.0% |
| !! | TAAACCAGAATAATTCAAAA+AGG | + | chr4.4:14487395-14487414 | None:intergenic | 20.0% |
| !!! | TTTTTGGAACTTGAATTTTT+GGG | - | chr4.4:14487573-14487592 | MS.gene08930:CDS | 20.0% |
| !!! | TTTTTTGGAACTTGAATTTT+TGG | - | chr4.4:14487572-14487591 | MS.gene08930:CDS | 20.0% |
| !!! | TTTTTTTGTGATTTGGTTTT+GGG | + | chr4.4:14486986-14487005 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTGATTTGGTTT+TGG | + | chr4.4:14486987-14487006 | None:intergenic | 20.0% |
| ! | AATCAAAGACATTAACACAA+AGG | + | chr4.4:14487467-14487486 | None:intergenic | 25.0% |
| ! | AGTACTTTCTTAACATTCTT+AGG | - | chr4.4:14488213-14488232 | MS.gene08930:CDS | 25.0% |
| ! | ATCAAAGACATTAACACAAA+GGG | + | chr4.4:14487466-14487485 | None:intergenic | 25.0% |
| ! | GGATTCATACCAAAAATATT+TGG | - | chr4.4:14487895-14487914 | MS.gene08930:intron | 25.0% |
| ! | GTACTTTCTTAACATTCTTA+GGG | - | chr4.4:14488214-14488233 | MS.gene08930:CDS | 25.0% |
| ! | TTGAAATATTGGATGGAAAT+TGG | - | chr4.4:14487793-14487812 | MS.gene08930:CDS | 25.0% |
| !! | TACCAAAAATATTTGGTGAA+AGG | - | chr4.4:14487902-14487921 | MS.gene08930:intron | 25.0% |
| !! | TTGTCCTTTTTGAATTATTC+TGG | - | chr4.4:14487388-14487407 | MS.gene08930:CDS | 25.0% |
| !!! | TGCTAGTTTTTTTTGTGATT+TGG | + | chr4.4:14486993-14487012 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGATTTGGTTTTG+GGG | + | chr4.4:14486985-14487004 | None:intergenic | 25.0% |
| AAGTAGATGAGAAAGATTAG+AGG | + | chr4.4:14487022-14487041 | None:intergenic | 30.0% | |
| AATCCAAGAATTGCAAAAAG+TGG | + | chr4.4:14487097-14487116 | None:intergenic | 30.0% | |
| AATCTTTCTCATCTACTTTG+AGG | - | chr4.4:14487024-14487043 | MS.gene08930:CDS | 30.0% | |
| ACAAAAATAGACACAATACG+AGG | + | chr4.4:14487355-14487374 | None:intergenic | 30.0% | |
| AGTAGATGAGAAAGATTAGA+GGG | + | chr4.4:14487021-14487040 | None:intergenic | 30.0% | |
| ATCAAACCAAATAATCCAAG+TGG | + | chr4.4:14488120-14488139 | None:intergenic | 30.0% | |
| CTAAAATTGATCCTAGTAGA+TGG | - | chr4.4:14487494-14487513 | MS.gene08930:CDS | 30.0% | |
| CTGGAATACTCCAAATAAAT+GGG | + | chr4.4:14487129-14487148 | None:intergenic | 30.0% | |
| GAATTGGTTGAAATATTGGA+TGG | - | chr4.4:14487786-14487805 | MS.gene08930:CDS | 30.0% | |
| GGGTTATATAATTCCTTTGT+TGG | - | chr4.4:14487684-14487703 | MS.gene08930:intron | 30.0% | |
| TACAATGAAACGACCTTATA+AGG | - | chr4.4:14488092-14488111 | MS.gene08930:CDS | 30.0% | |
| TATAAGGTCGTTTCATTGTA+GGG | + | chr4.4:14488092-14488111 | None:intergenic | 30.0% | |
| TGAATCTTTGTAAGTCTAAG+AGG | - | chr4.4:14488256-14488275 | MS.gene08930:CDS | 30.0% | |
| TGCTACCAAAATTGTATTTG+TGG | - | chr4.4:14488188-14488207 | MS.gene08930:CDS | 30.0% | |
| TTATAAGGTCGTTTCATTGT+AGG | + | chr4.4:14488093-14488112 | None:intergenic | 30.0% | |
| ! | ACTAGCCACAAATACAATTT+TGG | + | chr4.4:14488196-14488215 | None:intergenic | 30.0% |
| ! | ATTTATTTGGAGTATTCCAG+AGG | - | chr4.4:14487129-14487148 | MS.gene08930:CDS | 30.0% |
| ! | CATCTACTAGGATCAATTTT+AGG | + | chr4.4:14487496-14487515 | None:intergenic | 30.0% |
| ! | GACCTTTCACCAAATATTTT+TGG | + | chr4.4:14487907-14487926 | None:intergenic | 30.0% |
| ! | GGATATTGGAAATTCTTTTG+TGG | - | chr4.4:14487250-14487269 | MS.gene08930:intron | 30.0% |
| ! | TCTGGAATACTCCAAATAAA+TGG | + | chr4.4:14487130-14487149 | None:intergenic | 30.0% |
| !! | AAATGGTGGGTTTGTTATTT+GGG | - | chr4.4:14487189-14487208 | MS.gene08930:intron | 30.0% |
| !! | GTTTAGAAGATGTTGATGAT+AGG | + | chr4.4:14486939-14486958 | None:intergenic | 30.0% |
| !! | TATTCTGGTTTAGCTATAGT+TGG | - | chr4.4:14487403-14487422 | MS.gene08930:CDS | 30.0% |
| !!! | GCTTTAGGAAAAGTTTTATG+TGG | + | chr4.4:14487634-14487653 | None:intergenic | 30.0% |
| !!! | GGAATTTTTTCCTCAACTTA+AGG | + | chr4.4:14488071-14488090 | None:intergenic | 30.0% |
| AAGGTTCCACTTGGATTATT+TGG | - | chr4.4:14488111-14488130 | MS.gene08930:CDS | 35.0% | |
| AATCCAAGTGGAACCTTATA+AGG | + | chr4.4:14488108-14488127 | None:intergenic | 35.0% | |
| ACATTAACACAAAGGGCAAA+AGG | + | chr4.4:14487459-14487478 | None:intergenic | 35.0% | |
| ATAGTTGGTTATACTGCAGT+TGG | - | chr4.4:14487418-14487437 | MS.gene08930:CDS | 35.0% | |
| ATCTTTGTAAGTCTAAGAGG+TGG | - | chr4.4:14488259-14488278 | MS.gene08930:CDS | 35.0% | |
| CAATGGAGTAGGAGATAAAT+TGG | - | chr4.4:14488290-14488309 | MS.gene08930:CDS | 35.0% | |
| CATTAACACAAAGGGCAAAA+GGG | + | chr4.4:14487458-14487477 | None:intergenic | 35.0% | |
| CCTAAACTTAACCATCTACT+AGG | + | chr4.4:14487508-14487527 | None:intergenic | 35.0% | |
| CCTAGTAGATGGTTAAGTTT+AGG | - | chr4.4:14487505-14487524 | MS.gene08930:CDS | 35.0% | |
| CTGGGAATTGGTTGAAATAT+TGG | - | chr4.4:14487782-14487801 | MS.gene08930:CDS | 35.0% | |
| GAAATCAAAATTGCCATCCA+AGG | + | chr4.4:14487946-14487965 | None:intergenic | 35.0% | |
| TGGATTGAATTCAATGGAGT+AGG | - | chr4.4:14488279-14488298 | MS.gene08930:CDS | 35.0% | |
| TTGGATCTTCTTCTTCTCTT+TGG | + | chr4.4:14486961-14486980 | None:intergenic | 35.0% | |
| ! | AAGAGGGTGTAGAAAAAGAT+TGG | - | chr4.4:14487530-14487549 | MS.gene08930:CDS | 35.0% |
| ! | AGTGCTGCATATCAACTTTT+AGG | - | chr4.4:14487859-14487878 | MS.gene08930:CDS | 35.0% |
| ! | ATGAAGCTTTTGGTCCATTT+TGG | - | chr4.4:14487215-14487234 | MS.gene08930:intron | 35.0% |
| ! | ATGGTTAAGTTTAGGACAAG+AGG | - | chr4.4:14487513-14487532 | MS.gene08930:CDS | 35.0% |
| ! | ATTTGGGCTAATGAAGCTTT+TGG | - | chr4.4:14487205-14487224 | MS.gene08930:intron | 35.0% |
| ! | GTATAGTTTAGGGATGCTTT+TGG | - | chr4.4:14488032-14488051 | MS.gene08930:intron | 35.0% |
| ! | TATTTGGTGAAAGGTCAAAG+TGG | - | chr4.4:14487911-14487930 | MS.gene08930:intron | 35.0% |
| ! | TGAAGCTTTTGGTCCATTTT+GGG | - | chr4.4:14487216-14487235 | MS.gene08930:intron | 35.0% |
| ! | TGGTTAAGTTTAGGACAAGA+GGG | - | chr4.4:14487514-14487533 | MS.gene08930:CDS | 35.0% |
| ! | TTGCTTCTTTCCTTAAGTTG+AGG | - | chr4.4:14488058-14488077 | MS.gene08930:CDS | 35.0% |
| !! | AAGAGGTGGATTGAATTCAA+TGG | - | chr4.4:14488273-14488292 | MS.gene08930:CDS | 35.0% |
| !! | ACTTTTAGGTATGTCTGACT+TGG | - | chr4.4:14487873-14487892 | MS.gene08930:intron | 35.0% |
| !! | CTTTTAGGTATGTCTGACTT+GGG | - | chr4.4:14487874-14487893 | MS.gene08930:intron | 35.0% |
| !! | GAAATGGTGGGTTTGTTATT+TGG | - | chr4.4:14487188-14487207 | MS.gene08930:intron | 35.0% |
| !! | GCTGGATTGTTAACTTGTTT+GGG | - | chr4.4:14487664-14487683 | MS.gene08930:intron | 35.0% |
| !! | TGCTGGATTGTTAACTTGTT+TGG | - | chr4.4:14487663-14487682 | MS.gene08930:intron | 35.0% |
| !!! | GGTGCTGTTTTGTCAATTAT+TGG | - | chr4.4:14487814-14487833 | MS.gene08930:CDS | 35.0% |
| ACATAAACCAACAGCACAGA+TGG | + | chr4.4:14488159-14488178 | None:intergenic | 40.0% | |
| ACCCAAACTTCTTGATCAAG+TGG | + | chr4.4:14487727-14487746 | None:intergenic | 40.0% | |
| ATAACAAACCCACCATTTCC+AGG | + | chr4.4:14487187-14487206 | None:intergenic | 40.0% | |
| CAAAGTGGTTTAACACACCT+TGG | - | chr4.4:14487926-14487945 | MS.gene08930:intron | 40.0% | |
| CCAGCAAAAAGCAAAGCTTT+AGG | + | chr4.4:14487649-14487668 | None:intergenic | 40.0% | |
| CTTGATCAAGAAGTTTGGGT+TGG | - | chr4.4:14487727-14487746 | MS.gene08930:CDS | 40.0% | |
| GAATTAGCTACAACATTCCC+TGG | - | chr4.4:14487166-14487185 | MS.gene08930:CDS | 40.0% | |
| GATAGTGCTAGTACTTTAGC+TGG | - | chr4.4:14487595-14487614 | MS.gene08930:CDS | 40.0% | |
| GCCACTTGATCAAGAAGTTT+GGG | - | chr4.4:14487723-14487742 | MS.gene08930:CDS | 40.0% | |
| GGTAAACCTGAAGACAAAAC+AGG | + | chr4.4:14487334-14487353 | None:intergenic | 40.0% | |
| TAACAAACCCACCATTTCCA+GGG | + | chr4.4:14487186-14487205 | None:intergenic | 40.0% | |
| ! | AAGCTTTTGGTCCATTTTGG+GGG | - | chr4.4:14487218-14487237 | MS.gene08930:intron | 40.0% |
| ! | AATTTTGTGCTGCAGAGTGA+AGG | + | chr4.4:14486916-14486935 | None:intergenic | 40.0% |
| ! | ACTGTTGCTTCTTCACCATA+AGG | + | chr4.4:14487061-14487080 | None:intergenic | 40.0% |
| ! | ATTCCTTTGTTGGCTACTAC+CGG | - | chr4.4:14487694-14487713 | MS.gene08930:intron | 40.0% |
| ! | ATTTTGTGCTGCAGAGTGAA+GGG | + | chr4.4:14486915-14486934 | None:intergenic | 40.0% |
| ! | GAAGCTTTTGGTCCATTTTG+GGG | - | chr4.4:14487217-14487236 | MS.gene08930:intron | 40.0% |
| ! | GGTTATACTGCAGTTGGTTT+AGG | - | chr4.4:14487424-14487443 | MS.gene08930:CDS | 40.0% |
| ! | GTGATTCCTGTTTTGTCTTC+AGG | - | chr4.4:14487325-14487344 | MS.gene08930:intron | 40.0% |
| ! | TGCCACTTGATCAAGAAGTT+TGG | - | chr4.4:14487722-14487741 | MS.gene08930:CDS | 40.0% |
| ! | TTTTGTTCCATCTGTGCTGT+TGG | - | chr4.4:14488149-14488168 | MS.gene08930:CDS | 40.0% |
| !! | ATCAAGAAGTTTGGGTTGGT+GGG | - | chr4.4:14487731-14487750 | MS.gene08930:CDS | 40.0% |
| !! | ATCTACTTTGAGGTATCTGG+TGG | - | chr4.4:14487034-14487053 | MS.gene08930:CDS | 40.0% |
| !! | CTCATCTACTTTGAGGTATC+TGG | - | chr4.4:14487031-14487050 | MS.gene08930:CDS | 40.0% |
| !!! | CCTAAAGCTTTGCTTTTTGC+TGG | - | chr4.4:14487646-14487665 | MS.gene08930:intron | 40.0% |
| !!! | GGTCCACTTTTTGCAATTCT+TGG | - | chr4.4:14487091-14487110 | MS.gene08930:CDS | 40.0% |
| !!! | TGTGATTTGGTTTTGGGGTT+TGG | + | chr4.4:14486980-14486999 | None:intergenic | 40.0% |
| ACAACATTCCCTGGAAATGG+TGG | - | chr4.4:14487175-14487194 | MS.gene08930:intron | 45.0% | |
| CAACATTCCCTGGAAATGGT+GGG | - | chr4.4:14487176-14487195 | MS.gene08930:intron | 45.0% | |
| CGACCTTATAAGGTTCCACT+TGG | - | chr4.4:14488102-14488121 | MS.gene08930:CDS | 45.0% | |
| GCTACAACATTCCCTGGAAA+TGG | - | chr4.4:14487172-14487191 | MS.gene08930:intron | 45.0% | |
| GTGGTTTAACACACCTTGGA+TGG | - | chr4.4:14487930-14487949 | MS.gene08930:intron | 45.0% | |
| TCTGCAGTTAAAAGAGCCTC+TGG | + | chr4.4:14487148-14487167 | None:intergenic | 45.0% | |
| ! | CTGGTTTGATTGCTGGGAAT+TGG | - | chr4.4:14487770-14487789 | MS.gene08930:CDS | 45.0% |
| ! | TTCCTTTGTTGGCTACTACC+GGG | - | chr4.4:14487695-14487714 | MS.gene08930:intron | 45.0% |
| !! | ATGTGGCTGGTTTGATTGCT+GGG | - | chr4.4:14487764-14487783 | MS.gene08930:CDS | 45.0% |
| !! | CCATTTTGGGGGTCTCTTAT+GGG | - | chr4.4:14487229-14487248 | MS.gene08930:intron | 45.0% |
| !! | GATCAAGAAGTTTGGGTTGG+TGG | - | chr4.4:14487730-14487749 | MS.gene08930:CDS | 45.0% |
| !! | TCCATTTTGGGGGTCTCTTA+TGG | - | chr4.4:14487228-14487247 | MS.gene08930:intron | 45.0% |
| !! | TGGTGGGTATTTTGCACATG+TGG | - | chr4.4:14487747-14487766 | MS.gene08930:CDS | 45.0% |
| CCCATAAGAGACCCCCAAAA+TGG | + | chr4.4:14487232-14487251 | None:intergenic | 50.0% | |
| GGGGGTCTCTTATGGGATAT+TGG | - | chr4.4:14487236-14487255 | MS.gene08930:intron | 50.0% | |
| TTGATCAAGTGGCATAGCCC+CGG | + | chr4.4:14487716-14487735 | None:intergenic | 50.0% | |
| ! | GAAGCAACAGTAAGTGCTGC+AGG | - | chr4.4:14487070-14487089 | MS.gene08930:CDS | 50.0% |
| ! | GAGGTATCTGGTGGACCTTA+TGG | - | chr4.4:14487043-14487062 | MS.gene08930:CDS | 50.0% |
| ! | GGGTATTTTGCACATGTGGC+TGG | - | chr4.4:14487751-14487770 | MS.gene08930:CDS | 50.0% |
| ! | TCCTTTGTTGGCTACTACCG+GGG | - | chr4.4:14487696-14487715 | MS.gene08930:intron | 50.0% |
| !! | CATGTGGCTGGTTTGATTGC+TGG | - | chr4.4:14487763-14487782 | MS.gene08930:CDS | 50.0% |
| GCCCCGGTAGTAGCCAACAA+AGG | + | chr4.4:14487700-14487719 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14486890 | 14488338 | 14486890 | ID=MS.gene08930 |
| chr4.4 | mRNA | 14486890 | 14488338 | 14486890 | ID=MS.gene08930.t1;Parent=MS.gene08930 |
| chr4.4 | exon | 14488035 | 14488338 | 14488035 | ID=MS.gene08930.t1.exon1;Parent=MS.gene08930.t1 |
| chr4.4 | CDS | 14488035 | 14488338 | 14488035 | ID=cds.MS.gene08930.t1;Parent=MS.gene08930.t1 |
| chr4.4 | exon | 14487713 | 14487881 | 14487713 | ID=MS.gene08930.t1.exon2;Parent=MS.gene08930.t1 |
| chr4.4 | CDS | 14487713 | 14487881 | 14487713 | ID=cds.MS.gene08930.t1;Parent=MS.gene08930.t1 |
| chr4.4 | exon | 14487348 | 14487628 | 14487348 | ID=MS.gene08930.t1.exon3;Parent=MS.gene08930.t1 |
| chr4.4 | CDS | 14487348 | 14487628 | 14487348 | ID=cds.MS.gene08930.t1;Parent=MS.gene08930.t1 |
| chr4.4 | exon | 14486890 | 14487185 | 14486890 | ID=MS.gene08930.t1.exon4;Parent=MS.gene08930.t1 |
| chr4.4 | CDS | 14486890 | 14487185 | 14486890 | ID=cds.MS.gene08930.t1;Parent=MS.gene08930.t1 |
| Gene Sequence |
| Protein sequence |
