AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09303

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09303.t1 MTR_8g085560 95.361 194 7 1 1 192 1 194 1.44e-131 367
MS.gene09303.t1 MTR_3g083760 47.059 187 80 2 23 192 18 202 1.27e-52 167
MS.gene09303.t1 MTR_3g083760 54.098 122 56 0 23 144 18 139 8.64e-47 150
MS.gene09303.t1 MTR_8g446830 38.728 173 104 2 15 185 13 185 5.61e-39 132
MS.gene09303.t1 MTR_7g014880 37.234 188 99 4 15 189 10 191 2.71e-38 130
MS.gene09303.t1 MTR_1g103450 37.736 106 58 3 9 113 6 104 4.57e-12 61.6
MS.gene09303.t1 MTR_1g103470 41.096 73 40 1 33 105 25 94 8.59e-12 60.8
MS.gene09303.t1 MTR_5g006950 27.778 144 94 4 15 154 12 149 4.09e-11 59.3
MS.gene09303.t1 MTR_5g006940 34.862 109 64 4 10 113 6 112 6.10e-11 59.7
MS.gene09303.t1 MTR_1g103490 39.024 82 48 2 33 113 25 105 8.01e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09303.t1 AT2G44300 36.275 204 110 3 6 192 3 203 4.46e-42 140
MS.gene09303.t1 AT2G44290 35.567 194 107 2 14 192 14 204 1.15e-41 139
MS.gene09303.t1 AT1G55260 41.622 185 96 5 10 190 50 226 1.35e-41 140
MS.gene09303.t1 AT1G55260 41.209 182 98 4 10 190 50 223 1.74e-41 139
MS.gene09303.t1 AT3G58550 39.333 150 88 2 8 154 10 159 2.84e-33 117
MS.gene09303.t1 AT3G22600 32.967 91 60 1 15 105 7 96 6.17e-14 67.0
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT2G48130 35.000 100 63 2 15 113 9 107 1.74e-13 65.9
MS.gene09303.t1 AT1G73890 36.471 85 54 0 29 113 23 107 4.03e-13 65.1
MS.gene09303.t1 AT4G14815 35.106 94 57 2 15 108 8 97 9.44e-12 60.8
MS.gene09303.t1 AT1G03103 32.967 91 57 1 15 105 8 94 3.82e-11 59.3
MS.gene09303.t1 AT1G05450 29.448 163 103 4 13 169 10 166 6.53e-11 59.3

Find 50 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAGCCTCATGTGATTT+AGG 0.238066 4.1:+14154311 None:intergenic
ACAATCTATGGTTGGAGATT+TGG 0.249161 4.1:+14154603 None:intergenic
TACAATCCTTTGGTAACTTA+AGG 0.268613 4.1:+14154473 None:intergenic
GACACCAGTGCAACAATCTA+TGG 0.281431 4.1:+14154591 None:intergenic
ACCAATACATTGAGTTATAT+TGG 0.304514 4.1:+14154441 None:intergenic
TTTATAGTTAAACCAAGGTT+TGG 0.345145 4.1:+14154508 None:intergenic
GGTCATCATGATCTTTGATA+AGG 0.380512 4.1:+14154530 None:intergenic
ACAATCCTTTGGTAACTTAA+GGG 0.380953 4.1:+14154474 None:intergenic
GACAAGAACGGTGGCGGTTG+TGG 0.396527 4.1:-14152590 MS.gene09303:CDS
CGGTGCATTCTGCTTTGTCT+TGG 0.411232 4.1:+14154674 None:intergenic
GACAAACTCCTTACTTTGGC+TGG 0.412680 4.1:-14154652 MS.gene09303:CDS
GTAGGTGAGTTACAATCCTT+TGG 0.416024 4.1:+14154463 None:intergenic
TTATAGTTAAACCAAGGTTT+GGG 0.422627 4.1:+14154509 None:intergenic
CTCTTGGTAGAGGTGCTTTG+TGG 0.443821 4.1:-14152557 MS.gene09303:CDS
ACCAATATAACTCAATGTAT+TGG 0.457228 4.1:-14154442 MS.gene09303:intron
CACCGACAAACTCCTTACTT+TGG 0.466376 4.1:-14154656 MS.gene09303:CDS
GAAGACAACCAGCCAAAGTA+AGG 0.470397 4.1:+14154644 None:intergenic
ACATGAGGCTAAGGTATTTG+AGG 0.480429 4.1:-14154303 MS.gene09303:CDS
ACCTAAATCACATGAGGCTA+AGG 0.495814 4.1:-14154312 MS.gene09303:CDS
TTTGTCTTGGTTAATATCTG+AGG 0.495906 4.1:+14154687 None:intergenic
AAGTAGGAAACTAAAACAAA+TGG 0.516446 4.1:+14152527 None:intergenic
AAAGAGGTGGCTCTTGGTAG+AGG 0.525495 4.1:-14152567 MS.gene09303:CDS
ACTTCCACCGCAGTTCCTCC+AGG 0.529242 4.1:-14154254 MS.gene09303:intron
CATAAGGACTAGGAAAATCA+AGG 0.531221 4.1:+14154723 None:intergenic
GATCATGATGACCCAAACCT+TGG 0.532203 4.1:-14154520 MS.gene09303:CDS
TTGGCTTGATTAGTCACAAA+GGG 0.535509 4.1:+14154622 None:intergenic
TTGTGGAAAGAGGTGGCTCT+TGG 0.535765 4.1:-14152573 MS.gene09303:CDS
AGTTCAAACTACGAAGAAGT+AGG 0.542772 4.1:+14152511 None:intergenic
CTTTGGTAACTTAAGGGCAA+GGG 0.546332 4.1:+14154480 None:intergenic
CCTTTGGTAACTTAAGGGCA+AGG 0.546657 4.1:+14154479 None:intergenic
AGGTTACAAGACCAAACATA+AGG 0.547469 4.1:+14154707 None:intergenic
CCAACCATAGATTGTTGCAC+TGG 0.548725 4.1:-14154595 MS.gene09303:CDS
TGTGCTTGTTTCATTTCCAG+TGG 0.551525 4.1:+14152622 None:intergenic
ATTGCAGCTAGTGGTACCAC+TGG 0.560811 4.1:-14152638 MS.gene09303:intron
CCTTGCCCTTAAGTTACCAA+AGG 0.561963 4.1:-14154479 MS.gene09303:CDS
ACGGTGGCGGTTGTGGAAAG+AGG 0.565669 4.1:-14152583 MS.gene09303:CDS
CAAGACCAAACATAAGGACT+AGG 0.566810 4.1:+14154713 None:intergenic
AGCCAAAGTAAGGAGTTTGT+CGG 0.567852 4.1:+14154654 None:intergenic
ATACATTGAGTTATATTGGT+AGG 0.586657 4.1:+14154445 None:intergenic
GCTCAAGACAAGAACGGTGG+CGG 0.587172 4.1:-14152596 MS.gene09303:CDS
CCAGTGCAACAATCTATGGT+TGG 0.604106 4.1:+14154595 None:intergenic
GTGGCGGTTGTGGAAAGAGG+TGG 0.614207 4.1:-14152580 MS.gene09303:CDS
TAACATTTATAGTTAAACCA+AGG 0.621795 4.1:+14154503 None:intergenic
TTTGGCTTGATTAGTCACAA+AGG 0.627914 4.1:+14154621 None:intergenic
TTTGAAACCTAAATCACATG+AGG 0.643872 4.1:-14154318 MS.gene09303:CDS
TTTACCTGGAGGAACTGCGG+TGG 0.660595 4.1:+14154250 None:intergenic
AAATTTACCTGGAGGAACTG+CGG 0.666666 4.1:+14154247 None:intergenic
ACAATTGCTCAAGACAAGAA+CGG 0.667135 4.1:-14152602 MS.gene09303:CDS
TTGTTGCACTGGTGTCAAAG+AGG 0.679195 4.1:-14154584 MS.gene09303:CDS
ATTGCTCAAGACAAGAACGG+TGG 0.760005 4.1:-14152599 MS.gene09303:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTAAAATATTTA+GGG - chr4.1:14153884-14153903 MS.gene09303:intron 0.0%
!! AAAAATGTACTATAAATAAA+GGG + chr4.1:14153571-14153590 None:intergenic 10.0%
!! AATTAAATATCAAATTTAAC+AGG + chr4.1:14154010-14154029 None:intergenic 10.0%
!! ATATATACATTATTATGTAA+TGG + chr4.1:14153308-14153327 None:intergenic 10.0%
!!! ATTTTGTATAATTTCATATT+AGG - chr4.1:14153954-14153973 MS.gene09303:intron 10.0%
!! AAAATGTACTATAAATAAAG+GGG + chr4.1:14153570-14153589 None:intergenic 15.0%
!! AATAGTAAATAAAATTTACC+TGG + chr4.1:14153044-14153063 None:intergenic 15.0%
!! AATATAAAAACAAAAGACTA+AGG - chr4.1:14153083-14153102 MS.gene09303:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr4.1:14153506-14153525 None:intergenic 15.0%
!! GAAAAATGTACTATAAATAA+AGG + chr4.1:14153572-14153591 None:intergenic 15.0%
!! GTTTAAAAATTAATGAAGTA+TGG - chr4.1:14153820-14153839 MS.gene09303:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr4.1:14153507-14153526 None:intergenic 15.0%
!! TTCTATTTGTTTGTTTATAT+GGG + chr4.1:14154284-14154303 None:intergenic 15.0%
!! TTTCTATTTGTTTGTTTATA+TGG + chr4.1:14154285-14154304 None:intergenic 15.0%
!!! ACAAATAAAAAGTATCATTT+GGG + chr4.1:14154452-14154471 None:intergenic 15.0%
!!! CAATTTCTTTTTTTAAAGTT+AGG + chr4.1:14154364-14154383 None:intergenic 15.0%
!!! GACACTTTTTTTTAAAAAAT+GGG + chr4.1:14153437-14153456 None:intergenic 15.0%
!!! TTTTTAAACTTTTAATGCAA+TGG - chr4.1:14154185-14154204 MS.gene09303:intron 15.0%
!! AAAAAAAGAAATTGATGTAG+AGG - chr4.1:14154370-14154389 MS.gene09303:intron 20.0%
!! GTTTGAAGAGAATAAAAATT+AGG - chr4.1:14153976-14153995 MS.gene09303:intron 20.0%
!! TAACATTTATAGTTAAACCA+AGG + chr4.1:14152777-14152796 None:intergenic 20.0%
!! TTATTAAAGATCATATAGTG+TGG + chr4.1:14153363-14153382 None:intergenic 20.0%
!!! GACAAATAAAAAGTATCATT+TGG + chr4.1:14154453-14154472 None:intergenic 20.0%
!!! GGACACTTTTTTTTAAAAAA+TGG + chr4.1:14153438-14153457 None:intergenic 20.0%
!!! TATTTTTGGATAAAAGTGAT+TGG - chr4.1:14154600-14154619 MS.gene09303:CDS 20.0%
!!! TCCTTGTATTTTACTAATTT+GGG + chr4.1:14153118-14153137 None:intergenic 20.0%
!!! TGAAACAAATATCAAACTTT+TGG + chr4.1:14152928-14152947 None:intergenic 20.0%
!!! TGATTTAAAATTTCCACTTT+TGG + chr4.1:14154155-14154174 None:intergenic 20.0%
!!! TTCCTTGTATTTTACTAATT+TGG + chr4.1:14153119-14153138 None:intergenic 20.0%
!!! TTTTCTATCACATAATAAAG+TGG - chr4.1:14153226-14153245 MS.gene09303:intron 20.0%
! AAGTAGGAAACTAAAACAAA+TGG + chr4.1:14154753-14154772 None:intergenic 25.0%
! ACCAATACATTGAGTTATAT+TGG + chr4.1:14152839-14152858 None:intergenic 25.0%
! ACCAATATAACTCAATGTAT+TGG - chr4.1:14152835-14152854 MS.gene09303:intron 25.0%
! ACCCAAATTAGTAAAATACA+AGG - chr4.1:14153114-14153133 MS.gene09303:intron 25.0%
! AGTAAATAAAATTTACCTGG+AGG + chr4.1:14153041-14153060 None:intergenic 25.0%
! ATACATTGAGTTATATTGGT+AGG + chr4.1:14152835-14152854 None:intergenic 25.0%
! TTATAGTTAAACCAAGGTTT+GGG + chr4.1:14152771-14152790 None:intergenic 25.0%
! TTTATAGTTAAACCAAGGTT+TGG + chr4.1:14152772-14152791 None:intergenic 25.0%
!! ATCTCATTTGATTTCATTCT+AGG - chr4.1:14154541-14154560 MS.gene09303:CDS 25.0%
!! TATTTTTCTCCAAGGATTTT+TGG + chr4.1:14153004-14153023 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4.1:14153460-14153479 None:intergenic 25.0%
!!! CACTATTTTGATTGACATTT+GGG + chr4.1:14153657-14153676 None:intergenic 25.0%
!!! TCACTATTTTGATTGACATT+TGG + chr4.1:14153658-14153677 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4.1:14153459-14153478 None:intergenic 25.0%
!!! TGATCTTGCTTGTTTATTTT+TGG - chr4.1:14154586-14154605 MS.gene09303:CDS 25.0%
AAAAAATGGGTCAGATATTC+TGG + chr4.1:14153424-14153443 None:intergenic 30.0%
AAAAATGGGTCAGATATTCT+GGG + chr4.1:14153423-14153442 None:intergenic 30.0%
AAAATACAAGGAAGTCAAGA+AGG - chr4.1:14153126-14153145 MS.gene09303:intron 30.0%
AAATACAAGGAAGTCAAGAA+GGG - chr4.1:14153127-14153146 MS.gene09303:intron 30.0%
AATTCATTAATTGCAGCTAG+TGG - chr4.1:14154630-14154649 MS.gene09303:CDS 30.0%
ACTATAAATAAAGGGGAAAG+TGG + chr4.1:14153563-14153582 None:intergenic 30.0%
AGACTCGAAAAACAAATTGA+GGG - chr4.1:14154425-14154444 MS.gene09303:intron 30.0%
CCTAGGTTTGTATATATCAA+CGG - chr4.1:14153167-14153186 MS.gene09303:intron 30.0%
CTAGGTTTGTATATATCAAC+GGG - chr4.1:14153168-14153187 MS.gene09303:intron 30.0%
CTTAATAGAGATTAGAGTGA+AGG + chr4.1:14154520-14154539 None:intergenic 30.0%
GTTCTCTTAACAAAACATGA+AGG + chr4.1:14154498-14154517 None:intergenic 30.0%
TTTACTAATTTGGGTCATGT+GGG + chr4.1:14153109-14153128 None:intergenic 30.0%
TTTGTCTTGGTTAATATCTG+AGG + chr4.1:14152593-14152612 None:intergenic 30.0%
! ACAATCCTTTGGTAACTTAA+GGG + chr4.1:14152806-14152825 None:intergenic 30.0%
! ATTTTCCTAGTCCTTATGTT+TGG - chr4.1:14152559-14152578 MS.gene09303:CDS 30.0%
! TACAATCCTTTGGTAACTTA+AGG + chr4.1:14152807-14152826 None:intergenic 30.0%
! TTTGAAACCTAAATCACATG+AGG - chr4.1:14152959-14152978 MS.gene09303:intron 30.0%
! TTTTACTAATTTGGGTCATG+TGG + chr4.1:14153110-14153129 None:intergenic 30.0%
ACAATCTATGGTTGGAGATT+TGG + chr4.1:14152677-14152696 None:intergenic 35.0%
ACAATTGCTCAAGACAAGAA+CGG - chr4.1:14154675-14154694 MS.gene09303:CDS 35.0%
AGGTTACAAGACCAAACATA+AGG + chr4.1:14152573-14152592 None:intergenic 35.0%
CATAAGGACTAGGAAAATCA+AGG + chr4.1:14152557-14152576 None:intergenic 35.0%
CCGTTGATATATACAAACCT+AGG + chr4.1:14153170-14153189 None:intergenic 35.0%
GAGACTCGAAAAACAAATTG+AGG - chr4.1:14154424-14154443 MS.gene09303:intron 35.0%
GATATATACAAACCTAGGTG+TGG + chr4.1:14153165-14153184 None:intergenic 35.0%
GGTCATCATGATCTTTGATA+AGG + chr4.1:14152750-14152769 None:intergenic 35.0%
TAACAAAACATGAAGGCCTA+AGG + chr4.1:14154491-14154510 None:intergenic 35.0%
! TTGGCTTGATTAGTCACAAA+GGG + chr4.1:14152658-14152677 None:intergenic 35.0%
!! TTTGGCTTGATTAGTCACAA+AGG + chr4.1:14152659-14152678 None:intergenic 35.0%
AAATTTACCTGGAGGAACTG+CGG + chr4.1:14153033-14153052 None:intergenic 40.0%
ACCTAAATCACATGAGGCTA+AGG - chr4.1:14152965-14152984 MS.gene09303:intron 40.0%
ACCTTAGCCTCATGTGATTT+AGG + chr4.1:14152969-14152988 None:intergenic 40.0%
AGCCAAAGTAAGGAGTTTGT+CGG + chr4.1:14152626-14152645 None:intergenic 40.0%
CAACGACTCTAAATAGCCTT+AGG - chr4.1:14154472-14154491 MS.gene09303:CDS 40.0%
CAAGACCAAACATAAGGACT+AGG + chr4.1:14152567-14152586 None:intergenic 40.0%
CATATAGTGTGGTCCAGTAA+GGG + chr4.1:14153352-14153371 None:intergenic 40.0%
CTGGTTAAGGAATCCAAAAG+TGG - chr4.1:14154139-14154158 MS.gene09303:intron 40.0%
GTAGGTGAGTTACAATCCTT+TGG + chr4.1:14152817-14152836 None:intergenic 40.0%
TATACAAACCTAGGTGTGGA+TGG + chr4.1:14153161-14153180 None:intergenic 40.0%
TCATATAGTGTGGTCCAGTA+AGG + chr4.1:14153353-14153372 None:intergenic 40.0%
TCCCAATTTATCTGAGCCAA+GGG + chr4.1:14153614-14153633 None:intergenic 40.0%
TGAGGACTTCCAAAAATCCT+TGG - chr4.1:14152992-14153011 MS.gene09303:intron 40.0%
TGTGCTTGTTTCATTTCCAG+TGG + chr4.1:14154658-14154677 None:intergenic 40.0%
TTGGCTCAGATAAATTGGGA+CGG - chr4.1:14153614-14153633 MS.gene09303:intron 40.0%
! ACATGAGGCTAAGGTATTTG+AGG - chr4.1:14152974-14152993 MS.gene09303:intron 40.0%
! AGCGTAGCATTGAAACTTCA+AGG - chr4.1:14154315-14154334 MS.gene09303:CDS 40.0%
! CTTTGGTAACTTAAGGGCAA+GGG + chr4.1:14152800-14152819 None:intergenic 40.0%
!!! GGTGGAAGTATTTTTCTCCA+AGG + chr4.1:14153012-14153031 None:intergenic 40.0%
AGCCCTTGGCTCAGATAAAT+TGG - chr4.1:14153609-14153628 MS.gene09303:intron 45.0%
ATCTGTGTGAAATGAGCCCT+TGG - chr4.1:14153595-14153614 MS.gene09303:intron 45.0%
ATTGCTCAAGACAAGAACGG+TGG - chr4.1:14154678-14154697 MS.gene09303:CDS 45.0%
CACCGACAAACTCCTTACTT+TGG - chr4.1:14152621-14152640 MS.gene09303:CDS 45.0%
CCAACCATAGATTGTTGCAC+TGG - chr4.1:14152682-14152701 MS.gene09303:intron 45.0%
CCAGTGCAACAATCTATGGT+TGG + chr4.1:14152685-14152704 None:intergenic 45.0%
CCTTGCCCTTAAGTTACCAA+AGG - chr4.1:14152798-14152817 MS.gene09303:intron 45.0%
CTCAGATAAATTGGGACGGA+GGG - chr4.1:14153618-14153637 MS.gene09303:intron 45.0%
GAAGACAACCAGCCAAAGTA+AGG + chr4.1:14152636-14152655 None:intergenic 45.0%
GACAAACTCCTTACTTTGGC+TGG - chr4.1:14152625-14152644 MS.gene09303:CDS 45.0%
GACACCAGTGCAACAATCTA+TGG + chr4.1:14152689-14152708 None:intergenic 45.0%
GATCATGATGACCCAAACCT+TGG - chr4.1:14152757-14152776 MS.gene09303:intron 45.0%
GCCCTTGGCTCAGATAAATT+GGG - chr4.1:14153610-14153629 MS.gene09303:intron 45.0%
GGTTGCACAACTTTCAAAGC+AGG - chr4.1:14154206-14154225 MS.gene09303:intron 45.0%
GTCCCAATTTATCTGAGCCA+AGG + chr4.1:14153615-14153634 None:intergenic 45.0%
TACAAGGAAGTCAAGAAGGG+TGG - chr4.1:14153130-14153149 MS.gene09303:intron 45.0%
TGGAATTTCCATCCACACCT+AGG - chr4.1:14153150-14153169 MS.gene09303:intron 45.0%
TTGACTCCTTAACCAGTGTC+CGG - chr4.1:14154241-14154260 MS.gene09303:intron 45.0%
! CCTTTGGTAACTTAAGGGCA+AGG + chr4.1:14152801-14152820 None:intergenic 45.0%
! TTGTTGCACTGGTGTCAAAG+AGG - chr4.1:14152693-14152712 MS.gene09303:intron 45.0%
!! GTAGATTTTAACCAGTGCCC+CGG - chr4.1:14154112-14154131 MS.gene09303:intron 45.0%
!! GTCAGATATTCTGGGACGAA+GGG + chr4.1:14153415-14153434 None:intergenic 45.0%
!! TAGATTTTAACCAGTGCCCC+GGG - chr4.1:14154113-14154132 MS.gene09303:intron 45.0%
!!! CATATTTTATTAAAATATTT+AGG - chr4.1:14153883-14153902 MS.gene09303:intron 5.0%
AAAGAGGTGGCTCTTGGTAG+AGG - chr4.1:14154710-14154729 MS.gene09303:CDS 50.0%
ATTGCAGCTAGTGGTACCAC+TGG - chr4.1:14154639-14154658 MS.gene09303:CDS 50.0%
CGGTGCATTCTGCTTTGTCT+TGG + chr4.1:14152606-14152625 None:intergenic 50.0%
GCTCAGATAAATTGGGACGG+AGG - chr4.1:14153617-14153636 MS.gene09303:intron 50.0%
GGAAATGTTAACCAGTGCCC+CGG + chr4.1:14154263-14154282 None:intergenic 50.0%
GTTAATCGAGCTGCCCTTAC+TGG - chr4.1:14153336-14153355 MS.gene09303:intron 50.0%
TGACTCCTTAACCAGTGTCC+GGG - chr4.1:14154242-14154261 MS.gene09303:intron 50.0%
TTGTGGAAAGAGGTGGCTCT+TGG - chr4.1:14154704-14154723 MS.gene09303:CDS 50.0%
!! AGATTTTAACCAGTGCCCCG+GGG - chr4.1:14154114-14154133 MS.gene09303:intron 50.0%
!! CTCTTGGTAGAGGTGCTTTG+TGG - chr4.1:14154720-14154739 MS.gene09303:CDS 50.0%
!! GGTCAGATATTCTGGGACGA+AGG + chr4.1:14153416-14153435 None:intergenic 50.0%
ATTCCTTAACCAGTGCCCCG+GGG + chr4.1:14154132-14154151 None:intergenic 55.0%
GACTCCTTAACCAGTGTCCG+GGG - chr4.1:14154243-14154262 MS.gene09303:intron 55.0%
GATTCCTTAACCAGTGCCCC+GGG + chr4.1:14154133-14154152 None:intergenic 55.0%
GCTCAAGACAAGAACGGTGG+CGG - chr4.1:14154681-14154700 MS.gene09303:CDS 55.0%
GGATTCCTTAACCAGTGCCC+CGG + chr4.1:14154134-14154153 None:intergenic 55.0%
TTTACCTGGAGGAACTGCGG+TGG + chr4.1:14153030-14153049 None:intergenic 55.0%
ACTTCCACCGCAGTTCCTCC+AGG - chr4.1:14153023-14153042 MS.gene09303:intron 60.0%
GTGGCGGTTGTGGAAAGAGG+TGG - chr4.1:14154697-14154716 MS.gene09303:CDS 60.0%
TTAACCAGTGCCCCGGACAC+TGG + chr4.1:14154256-14154275 None:intergenic 60.0%
TTAACCAGTGTCCGGGGCAC+TGG - chr4.1:14154249-14154268 MS.gene09303:intron 60.0%
! ACGGTGGCGGTTGTGGAAAG+AGG - chr4.1:14154694-14154713 MS.gene09303:CDS 60.0%
! AGTGCCCCGGACACTGGTTA+AGG + chr4.1:14154250-14154269 None:intergenic 60.0%
! GACAAGAACGGTGGCGGTTG+TGG - chr4.1:14154687-14154706 MS.gene09303:CDS 60.0%
TAACCAGTGCCCCGGGGCAC+TGG - chr4.1:14154120-14154139 MS.gene09303:intron 70.0%
TAACCAGTGCCCCGGGGCAC+TGG + chr4.1:14154139-14154120 None:intergenic 70.0%
!! GTGCCCCGGGGCACTGGTTA+AGG - chr4.1:14154126-14154145 MS.gene09303:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 14152514 14154785 14152514 ID=MS.gene09303
chr4.1 mRNA 14152514 14154785 14152514 ID=MS.gene09303.t1;Parent=MS.gene09303
chr4.1 exon 14154443 14154785 14154443 ID=MS.gene09303.t1.exon1;Parent=MS.gene09303.t1
chr4.1 CDS 14154443 14154785 14154443 ID=cds.MS.gene09303.t1;Parent=MS.gene09303.t1
chr4.1 exon 14154255 14154350 14154255 ID=MS.gene09303.t1.exon2;Parent=MS.gene09303.t1
chr4.1 CDS 14154255 14154350 14154255 ID=cds.MS.gene09303.t1;Parent=MS.gene09303.t1
chr4.1 exon 14152514 14152653 14152514 ID=MS.gene09303.t1.exon3;Parent=MS.gene09303.t1
chr4.1 CDS 14152514 14152653 14152514 ID=cds.MS.gene09303.t1;Parent=MS.gene09303.t1
Gene Sequence

>MS.gene09303

ATGGGTTGCAAAAGCACAACAAATCTATCACTCTTCTCTACCTTGATTTTCCTAGTCCTTATGTTTGGTCTTGTAACCTCAGATATTAACCAAGACAAAGCAGAATGCACCGACAAACTCCTTACTTTGGCTGGTTGTCTTCCCTTTGTGACTAATCAAGCCAAATCTCCAACCATAGATTGTTGCACTGGTGTCAAAGAGGTTGTTGATAAGAGTAAGAGATGTTTATGTATCCTTATCAAAGATCATGATGACCCAAACCTTGGTTTAACTATAAATGTTACCCTTGCCCTTAAGTTACCAAAGGATTGTAACTCACCTACCAATATAACTCAATGTATTGGTAAGTAAATATCTTATCTTCAATATATGACTCTAATTAGTCTTATGTTTATGCTTTTGTGTTTCAAGCCAAAAGTTTGATATTTGTTTCAGATATTTTGCATTTGAAACCTAAATCACATGAGGCTAAGGTATTTGAGGACTTCCAAAAATCCTTGGAGAAAAATACTTCCACCGCAGTTCCTCCAGGTAAATTTTATTTACTATTTTTTAATCTTAAATAAAATAATATAAAAACAAAAGACTAAGGCCCACATGACCCAAATTAGTAAAATACAAGGAAGTCAAGAAGGGTGGAATTTCCATCCACACCTAGGTTTGTATATATCAACGGGTCTTTGATGTGAAAGAACGCACTATATGATATTTTTTTTCTATCACATAATAAAGTGGCTAAATTTACTCACAATAAATATAAAGAAGTAGAGAATTTGATGTTTGAATCTCAACCATTACATAATAATGTATATATAAAAAATTGTTAATCGAGCTGCCCTTACTGGACCACACTATATGATCTTTAATAATTAATACATAAAATTATTAACTTAATACTCCCTTCGTCCCAGAATATCTGACCCATTTTTTAAAAAAAAGTGTCCCAAAATAACTGAGTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACACTAAATAATACTACTTTTATCATTCTCAATACAATATATTCCACTTTCCCCTTTATTTATAGTACATTTTTCTTAATCTGTGTGAAATGAGCCCTTGGCTCAGATAAATTGGGACGGAGGGAGTACTATATTATCCCAAATGTCAATCAAAATAGTGATTTATTTATAAAAAAATAAATAAAAATGTACTATTTCTATCTGCATTTTAAATTTTAAATGTTTAATTACATTGTTTGTCTCTATTGTTTGAGCAATGTGTGACTTTGATCTCTAGCTTTTTTGAGTGATTTAGTCGATCTTGTTTAAAAATTAATGAAGTATGGTCTACTATCAAGTGTATTTCACATAAATCATTTAAAGTATCATATTTTATTAAAATATTTAGGGTTCATGATGAATTTGAGATATAAAATAAAAAGTAAAATATTTGATCAATTTTGTATAATTTCATATTAGGTTTGAAGAGAATAAAAATTAGGATTTTTTTCCTGTTAAATTTGATATTTAATTTGTAAATTTTTAAGTGAAATAATGTTAAAAGTCATTTCATCAATACAAATTGTGAAATTTTTAAAATAGATTATGAAAATGTGTAGATTTTAACCAGTGCCCCGGGGCACTGGTTAAGGAATCCAAAAGTGGAAATTTTAAATCAAAAAGAACACTTTTTAAACTTTTAATGCAATGGTTGCACAACTTTCAAAGCAGGATACTACTATATTTGACTCCTTAACCAGTGTCCGGGGCACTGGTTAACATTTCCCATATAAACAAACAAATAGAAAATAGATGAAGAGCGTAGCATTGAAACTTCAAGGTGTCGATGAAAGATTTTTCTTTTCCTAACTTTAAAAAAAGAAATTGATGTAGAGGCTTAATTGAAACAATTAAAAACTTGAGTGCTGAGACTCGAAAAACAAATTGAGGGACCCAAATGATACTTTTTATTTGTCAACGACTCTAAATAGCCTTAGGCCTTCATGTTTTGTTAAGAGAACCTTCACTCTAATCTCTATTAAGAATCTCATTTGATTTCATTCTAGGTTTTTTTTTTTTTTGCTCAATGTGATCTTGCTTGTTTATTTTTGGATAAAAGTGATTGGAACTAGAAATTCATTAATTGCAGCTAGTGGTACCACTGGAAATGAAACAAGCACAATTGCTCAAGACAAGAACGGTGGCGGTTGTGGAAAGAGGTGGCTCTTGGTAGAGGTGCTTTGTGGCATTTTACCATTTGTTTTAGTTTCCTACTTCTTCGTAGTTTGA
Protein sequence

>MS.gene09303.t1

MGCKSTTNLSLFSTLIFLVLMFGLVTSDINQDKAECTDKLLTLAGCLPFVTNQAKSPTIDCCTGVKEVVDKSKRCLCILIKDHDDPNLGLTINVTLALKLPKDCNSPTNITQCIDILHLKPKSHEAKVFEDFQKSLEKNTSTAVPPASGTTGNETSTIAQDKNGGGCGKRWLLVEVLCGILPFVLVSYFFVV