Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21349.t1 | XP_003591636.2 | 92.4 | 225 | 17 | 0 | 1 | 225 | 1 | 225 | 1.40E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21349.t1 | Q03664 | 48.6 | 220 | 110 | 2 | 1 | 220 | 1 | 217 | 4.8e-56 | 219.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21349.t1 | Q1RSI2 | 92.4 | 225 | 17 | 0 | 1 | 225 | 1 | 225 | 9.8e-119 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene21349 | 0.831006 | 2.13E-55 | -1.69E-46 |
| MS.gene053549 | MS.gene21349 | 0.811864 | 5.66E-51 | -1.69E-46 |
| MS.gene053826 | MS.gene21349 | 0.820107 | 8.17E-53 | -1.69E-46 |
| MS.gene054435 | MS.gene21349 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene056408 | MS.gene21349 | 0.810436 | 1.15E-50 | -1.69E-46 |
| MS.gene05726 | MS.gene21349 | 0.84364 | 1.24E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21349.t1 | MTR_1g090060 | 92.444 | 225 | 17 | 0 | 1 | 225 | 1 | 225 | 6.66e-157 | 434 |
| MS.gene21349.t1 | MTR_1g090100 | 88.372 | 215 | 25 | 0 | 4 | 218 | 3 | 217 | 1.66e-140 | 392 |
| MS.gene21349.t1 | MTR_1g090090 | 83.111 | 225 | 38 | 0 | 1 | 225 | 1 | 225 | 5.12e-140 | 391 |
| MS.gene21349.t1 | MTR_1g090070 | 80.995 | 221 | 41 | 1 | 1 | 220 | 7 | 227 | 1.93e-134 | 377 |
| MS.gene21349.t1 | MTR_4g059730 | 69.302 | 215 | 66 | 0 | 3 | 217 | 4 | 218 | 3.03e-112 | 320 |
| MS.gene21349.t1 | MTR_1g115195 | 48.131 | 214 | 108 | 2 | 1 | 212 | 1 | 213 | 4.85e-67 | 206 |
| MS.gene21349.t1 | MTR_1g090150 | 50.000 | 212 | 103 | 2 | 1 | 211 | 1 | 210 | 6.62e-67 | 206 |
| MS.gene21349.t1 | MTR_3g099757 | 47.619 | 210 | 106 | 2 | 1 | 208 | 1 | 208 | 3.88e-64 | 199 |
| MS.gene21349.t1 | MTR_5g040430 | 42.661 | 218 | 121 | 2 | 2 | 215 | 6 | 223 | 3.35e-59 | 186 |
| MS.gene21349.t1 | MTR_4g019790 | 42.667 | 225 | 122 | 3 | 2 | 225 | 6 | 224 | 1.59e-58 | 184 |
| MS.gene21349.t1 | MTR_4g019780 | 44.444 | 216 | 116 | 3 | 3 | 217 | 8 | 220 | 3.55e-57 | 181 |
| MS.gene21349.t1 | MTR_7g065660 | 43.636 | 220 | 118 | 4 | 4 | 221 | 8 | 223 | 4.41e-56 | 178 |
| MS.gene21349.t1 | MTR_7g065740 | 43.925 | 214 | 113 | 4 | 3 | 213 | 7 | 216 | 8.26e-56 | 177 |
| MS.gene21349.t1 | MTR_7g065720 | 43.578 | 218 | 118 | 2 | 3 | 218 | 7 | 221 | 1.50e-55 | 177 |
| MS.gene21349.t1 | MTR_7g065230 | 43.891 | 221 | 115 | 4 | 3 | 222 | 7 | 219 | 1.86e-55 | 176 |
| MS.gene21349.t1 | MTR_6g080440 | 41.778 | 225 | 127 | 3 | 1 | 224 | 1 | 222 | 1.22e-54 | 174 |
| MS.gene21349.t1 | MTR_8g087410 | 42.466 | 219 | 124 | 1 | 3 | 221 | 6 | 222 | 4.03e-54 | 173 |
| MS.gene21349.t1 | MTR_8g087425 | 43.128 | 211 | 118 | 1 | 3 | 213 | 5 | 213 | 4.81e-54 | 173 |
| MS.gene21349.t1 | MTR_7g065590 | 41.892 | 222 | 123 | 4 | 3 | 222 | 7 | 224 | 9.63e-54 | 172 |
| MS.gene21349.t1 | MTR_2g070150 | 44.878 | 205 | 108 | 3 | 3 | 206 | 4 | 204 | 2.81e-53 | 170 |
| MS.gene21349.t1 | MTR_2g070120 | 43.602 | 211 | 114 | 3 | 3 | 212 | 4 | 210 | 4.22e-53 | 170 |
| MS.gene21349.t1 | MTR_7g065710 | 43.333 | 210 | 111 | 3 | 4 | 212 | 5 | 207 | 1.15e-52 | 169 |
| MS.gene21349.t1 | MTR_7g065630 | 41.364 | 220 | 121 | 3 | 3 | 221 | 25 | 237 | 1.26e-52 | 170 |
| MS.gene21349.t1 | MTR_2g070130 | 41.262 | 206 | 116 | 3 | 3 | 207 | 4 | 205 | 7.09e-52 | 167 |
| MS.gene21349.t1 | MTR_7g065600 | 41.176 | 221 | 124 | 4 | 4 | 222 | 8 | 224 | 8.31e-52 | 167 |
| MS.gene21349.t1 | MTR_7g065750 | 41.778 | 225 | 122 | 5 | 3 | 224 | 7 | 225 | 8.92e-52 | 167 |
| MS.gene21349.t1 | MTR_5g037380 | 41.589 | 214 | 119 | 3 | 3 | 210 | 5 | 218 | 8.00e-51 | 165 |
| MS.gene21349.t1 | MTR_2g070210 | 40.465 | 215 | 121 | 4 | 3 | 214 | 4 | 214 | 1.00e-50 | 164 |
| MS.gene21349.t1 | MTR_8g061950 | 43.172 | 227 | 121 | 5 | 2 | 221 | 4 | 229 | 1.35e-50 | 164 |
| MS.gene21349.t1 | MTR_2g070200 | 42.466 | 219 | 119 | 5 | 3 | 218 | 4 | 218 | 1.41e-50 | 164 |
| MS.gene21349.t1 | MTR_2g070180 | 42.233 | 206 | 114 | 3 | 3 | 207 | 4 | 205 | 2.91e-50 | 163 |
| MS.gene21349.t1 | MTR_7g065290 | 40.465 | 215 | 124 | 2 | 3 | 216 | 7 | 218 | 3.54e-50 | 163 |
| MS.gene21349.t1 | MTR_2g070140 | 43.655 | 197 | 106 | 3 | 16 | 211 | 1 | 193 | 8.57e-50 | 161 |
| MS.gene21349.t1 | MTR_7g065270 | 40.741 | 216 | 124 | 2 | 3 | 217 | 7 | 219 | 1.38e-49 | 161 |
| MS.gene21349.t1 | MTR_7g065640 | 40.639 | 219 | 108 | 3 | 4 | 221 | 8 | 205 | 1.80e-48 | 158 |
| MS.gene21349.t1 | MTR_7g065265 | 40.278 | 216 | 125 | 2 | 3 | 217 | 7 | 219 | 1.21e-47 | 156 |
| MS.gene21349.t1 | MTR_7g065700 | 43.810 | 210 | 110 | 3 | 3 | 211 | 7 | 209 | 7.56e-46 | 152 |
| MS.gene21349.t1 | MTR_3g467420 | 39.901 | 203 | 117 | 3 | 9 | 210 | 15 | 213 | 1.50e-45 | 151 |
| MS.gene21349.t1 | MTR_7g065260 | 42.152 | 223 | 122 | 5 | 3 | 222 | 14 | 232 | 2.81e-45 | 150 |
| MS.gene21349.t1 | MTR_2g070060 | 41.315 | 213 | 120 | 3 | 3 | 214 | 4 | 212 | 3.31e-45 | 150 |
| MS.gene21349.t1 | MTR_7g065680 | 41.096 | 219 | 121 | 3 | 3 | 220 | 7 | 218 | 3.66e-45 | 150 |
| MS.gene21349.t1 | MTR_3g467430 | 39.904 | 208 | 120 | 3 | 4 | 210 | 10 | 213 | 3.20e-44 | 148 |
| MS.gene21349.t1 | MTR_8g056940 | 40.887 | 203 | 115 | 4 | 10 | 211 | 11 | 209 | 1.14e-43 | 146 |
| MS.gene21349.t1 | MTR_4g124130 | 40.183 | 219 | 123 | 5 | 3 | 218 | 4 | 217 | 7.22e-43 | 144 |
| MS.gene21349.t1 | MTR_2g070070 | 40.376 | 213 | 122 | 3 | 3 | 214 | 4 | 212 | 2.93e-41 | 140 |
| MS.gene21349.t1 | MTR_5g076900 | 38.235 | 204 | 121 | 3 | 9 | 211 | 12 | 211 | 1.48e-40 | 138 |
| MS.gene21349.t1 | MTR_2g070110 | 39.631 | 217 | 117 | 5 | 3 | 214 | 4 | 211 | 6.16e-39 | 134 |
| MS.gene21349.t1 | MTR_0186s0030 | 46.565 | 131 | 69 | 1 | 10 | 139 | 11 | 141 | 1.35e-34 | 120 |
| MS.gene21349.t1 | MTR_2g072120 | 61.017 | 59 | 22 | 1 | 47 | 104 | 2 | 60 | 1.85e-20 | 82.4 |
| MS.gene21349.t1 | MTR_5g037390 | 46.250 | 80 | 40 | 1 | 29 | 105 | 13 | 92 | 3.56e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21349.t1 | AT2G29420 | 43.056 | 216 | 121 | 1 | 3 | 218 | 9 | 222 | 1.20e-57 | 182 |
| MS.gene21349.t1 | AT3G09270 | 45.205 | 219 | 116 | 3 | 4 | 220 | 7 | 223 | 2.14e-57 | 181 |
| MS.gene21349.t1 | AT2G29460 | 40.183 | 219 | 128 | 2 | 3 | 220 | 7 | 223 | 3.13e-56 | 179 |
| MS.gene21349.t1 | AT2G29470 | 40.455 | 220 | 127 | 3 | 4 | 221 | 8 | 225 | 1.52e-55 | 177 |
| MS.gene21349.t1 | AT2G29450 | 42.601 | 223 | 118 | 4 | 3 | 220 | 6 | 223 | 1.03e-54 | 175 |
| MS.gene21349.t1 | AT2G29440 | 42.152 | 223 | 120 | 4 | 3 | 221 | 6 | 223 | 1.33e-54 | 174 |
| MS.gene21349.t1 | AT2G29480 | 40.639 | 219 | 127 | 2 | 4 | 221 | 8 | 224 | 2.83e-54 | 174 |
| MS.gene21349.t1 | AT1G10370 | 42.857 | 224 | 123 | 3 | 2 | 220 | 4 | 227 | 5.22e-54 | 173 |
| MS.gene21349.t1 | AT2G29490 | 40.183 | 219 | 128 | 2 | 4 | 221 | 8 | 224 | 1.22e-52 | 169 |
| MS.gene21349.t1 | AT1G59670 | 40.969 | 227 | 128 | 4 | 3 | 223 | 6 | 232 | 2.57e-52 | 169 |
| MS.gene21349.t1 | AT1G59700 | 41.485 | 229 | 126 | 5 | 3 | 225 | 6 | 232 | 4.80e-50 | 163 |
| MS.gene21349.t1 | AT1G78340 | 42.105 | 209 | 116 | 3 | 3 | 210 | 4 | 208 | 2.89e-49 | 160 |
| MS.gene21349.t1 | AT1G10360 | 41.964 | 224 | 123 | 4 | 3 | 220 | 5 | 227 | 1.49e-48 | 159 |
| MS.gene21349.t1 | AT1G17180 | 39.171 | 217 | 127 | 3 | 3 | 218 | 4 | 216 | 1.89e-48 | 159 |
| MS.gene21349.t1 | AT5G62480 | 37.443 | 219 | 130 | 2 | 3 | 214 | 8 | 226 | 1.92e-48 | 159 |
| MS.gene21349.t1 | AT1G78370 | 41.262 | 206 | 116 | 4 | 6 | 210 | 7 | 208 | 2.40e-48 | 158 |
| MS.gene21349.t1 | AT1G17170 | 41.475 | 217 | 121 | 5 | 3 | 218 | 4 | 215 | 1.23e-47 | 156 |
| MS.gene21349.t1 | AT1G78380 | 41.667 | 216 | 121 | 4 | 3 | 217 | 4 | 215 | 4.73e-47 | 155 |
| MS.gene21349.t1 | AT1G74590 | 36.986 | 219 | 135 | 2 | 2 | 217 | 6 | 224 | 9.80e-47 | 154 |
| MS.gene21349.t1 | AT1G78320 | 40.097 | 207 | 119 | 3 | 3 | 208 | 4 | 206 | 4.10e-46 | 152 |
| MS.gene21349.t1 | AT1G69930 | 40.284 | 211 | 122 | 3 | 4 | 210 | 13 | 223 | 3.46e-44 | 148 |
| MS.gene21349.t1 | AT1G27130 | 40.845 | 213 | 120 | 4 | 4 | 210 | 7 | 219 | 4.99e-44 | 147 |
| MS.gene21349.t1 | AT1G78360 | 39.070 | 215 | 125 | 4 | 2 | 214 | 3 | 213 | 1.25e-43 | 146 |
| MS.gene21349.t1 | AT1G17190 | 35.000 | 220 | 138 | 3 | 3 | 221 | 5 | 220 | 2.06e-42 | 143 |
| MS.gene21349.t1 | AT3G43800 | 37.615 | 218 | 129 | 4 | 3 | 216 | 5 | 219 | 9.33e-42 | 142 |
| MS.gene21349.t1 | AT1G53680 | 38.614 | 202 | 117 | 4 | 9 | 207 | 13 | 210 | 3.10e-41 | 140 |
| MS.gene21349.t1 | AT1G27140 | 39.819 | 221 | 126 | 4 | 4 | 217 | 7 | 227 | 4.85e-41 | 140 |
| MS.gene21349.t1 | AT1G69920 | 38.498 | 213 | 125 | 4 | 4 | 210 | 35 | 247 | 1.24e-39 | 137 |
| MS.gene21349.t1 | AT5G62480 | 30.876 | 217 | 119 | 2 | 3 | 213 | 8 | 199 | 7.10e-32 | 115 |
| MS.gene21349.t1 | AT5G62480 | 30.876 | 217 | 118 | 2 | 3 | 213 | 8 | 198 | 7.46e-32 | 115 |
| MS.gene21349.t1 | AT1G78320 | 32.524 | 206 | 109 | 3 | 3 | 208 | 4 | 179 | 3.11e-28 | 105 |
Find 43 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCCCTCGATTGCATTTA+TGG | 0.096900 | 1.4:-71311744 | MS.gene21349:CDS |
| ACAGAGCTCAAGCCCGATTT+TGG | 0.174441 | 1.4:-71312689 | MS.gene21349:CDS |
| TGGTATACCCTTCAAATTTA+AGG | 0.193811 | 1.4:+71312893 | None:intergenic |
| AGAAGGCCAGAGAGAATTTA+TGG | 0.204560 | 1.4:-71311924 | MS.gene21349:CDS |
| GCACTCCTCTATAGCAAAAT+TGG | 0.275055 | 1.4:-71311958 | MS.gene21349:CDS |
| CATACTACCCTTAAAGTAAA+AGG | 0.285985 | 1.4:+71312918 | None:intergenic |
| AGCTATGTCTACAATGTTAA+TGG | 0.297246 | 1.4:+71311837 | None:intergenic |
| AGGTGAAACTACATGGATTT+TGG | 0.302285 | 1.4:-71312947 | MS.gene21349:CDS |
| TATCAAATTTATTGAGGTTC+AGG | 0.304577 | 1.4:-71311803 | MS.gene21349:CDS |
| CAACATATTTAACCCAAAAT+CGG | 0.352973 | 1.4:+71312676 | None:intergenic |
| GCCACCAACTTCTCTTGGTC+AGG | 0.366758 | 1.4:+71311679 | None:intergenic |
| TCGGGCTTGAGCTCTGTCAT+AGG | 0.384467 | 1.4:+71312695 | None:intergenic |
| AATGATCATGGACTCACATA+TGG | 0.394155 | 1.4:+71312770 | None:intergenic |
| GGTTAAATATGTTGATGAAT+TGG | 0.403400 | 1.4:-71312667 | MS.gene21349:intron |
| AGTTATTGAAGATAAGTGTT+TGG | 0.410970 | 1.4:-71311890 | MS.gene21349:CDS |
| AACATATTTAACCCAAAATC+GGG | 0.426033 | 1.4:+71312677 | None:intergenic |
| TTGAATACATTGATGAGATA+TGG | 0.441703 | 1.4:-71312746 | MS.gene21349:CDS |
| AACATTGTAGACATAGCTCT+TGG | 0.450264 | 1.4:-71311832 | MS.gene21349:CDS |
| TTCAATTAGAGAATTAAGAA+AGG | 0.461738 | 1.4:+71311657 | None:intergenic |
| GAAAGGCCACCAACTTCTCT+TGG | 0.471563 | 1.4:+71311674 | None:intergenic |
| AGTATGGACCTTAAATTTGA+AGG | 0.474244 | 1.4:-71312901 | MS.gene21349:CDS |
| AATGTATTCAACAATGATCA+TGG | 0.484642 | 1.4:+71312758 | None:intergenic |
| GAAGGCCAGAGAGAATTTAT+GGG | 0.489428 | 1.4:-71311923 | MS.gene21349:CDS |
| TCTTCCTCTATGTTCTCATA+TGG | 0.502605 | 1.4:+71312873 | None:intergenic |
| CACCCCTGACCAAGAGAAGT+TGG | 0.508213 | 1.4:-71311683 | MS.gene21349:CDS |
| TCGCTCCCATAAATTCTCTC+TGG | 0.520342 | 1.4:+71311918 | None:intergenic |
| TTTCCATCATGAACTAGCAC+TGG | 0.520703 | 1.4:+71312795 | None:intergenic |
| GATATGGTCACACAACTCAT+TGG | 0.531719 | 1.4:-71312730 | MS.gene21349:CDS |
| ATGATCATGGACTCACATAT+GGG | 0.533497 | 1.4:+71312771 | None:intergenic |
| CGGGCTTGAGCTCTGTCATA+GGG | 0.535527 | 1.4:+71312696 | None:intergenic |
| GCTCTGTCATAGGGATCAGC+AGG | 0.544103 | 1.4:+71312705 | None:intergenic |
| CCACCAACTTCTCTTGGTCA+GGG | 0.547093 | 1.4:+71311680 | None:intergenic |
| TTTACAGATTTCGGCAATTG+CGG | 0.548298 | 1.4:-71311980 | MS.gene21349:intron |
| GTATGGACCTTAAATTTGAA+GGG | 0.551809 | 1.4:-71312900 | MS.gene21349:CDS |
| ATGGCAGAGGTGAAACTACA+TGG | 0.553227 | 1.4:-71312954 | MS.gene21349:CDS |
| ACTCCAGTGCTAGTTCATGA+TGG | 0.566801 | 1.4:-71312798 | MS.gene21349:CDS |
| CACCAACTTCTCTTGGTCAG+GGG | 0.567960 | 1.4:+71311681 | None:intergenic |
| TTAAACCATAAATGCAATCG+AGG | 0.585366 | 1.4:+71311739 | None:intergenic |
| CCCTGACCAAGAGAAGTTGG+TGG | 0.614205 | 1.4:-71311680 | MS.gene21349:CDS |
| TAAACCATAAATGCAATCGA+GGG | 0.618785 | 1.4:+71311740 | None:intergenic |
| AATTGGTGAAGAGCGAGAGA+AGG | 0.634346 | 1.4:-71311941 | MS.gene21349:CDS |
| AGCACAAGCTAGGATGGCAG+AGG | 0.663463 | 1.4:-71312967 | None:intergenic |
| TATACCATATGAGAACATAG+AGG | 0.675165 | 1.4:-71312877 | MS.gene21349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGGATTTAATTTAATTTTAT+AGG | - | chr1.4:71312080-71312099 | MS.gene21349:intron | 10.0% |
| !!! | TTTATGGTTTAATAATTTTA+AGG | - | chr1.4:71312853-71312872 | MS.gene21349:CDS | 10.0% |
| !! | AAAATTAAATTAAATCCTCA+TGG | + | chr1.4:71312078-71312097 | None:intergenic | 15.0% |
| !! | ATGTAATTTATCTTTATGAA+TGG | - | chr1.4:71312299-71312318 | MS.gene21349:intron | 15.0% |
| !!! | ATCTTTTATCAAATTTATTG+AGG | - | chr1.4:71312772-71312791 | MS.gene21349:CDS | 15.0% |
| !!! | ATGATCAAAAGAAATTTTAT+GGG | - | chr1.4:71312714-71312733 | MS.gene21349:CDS | 15.0% |
| !! | AAATTAAGTTAAAGGATTCA+TGG | - | chr1.4:71312465-71312484 | MS.gene21349:intron | 20.0% |
| !! | AAGAATGAAAGTTGAATTAA+CGG | + | chr1.4:71312116-71312135 | None:intergenic | 20.0% |
| !! | CTTAATCTTAAGTTTCAAAA+AGG | + | chr1.4:71312422-71312441 | None:intergenic | 20.0% |
| !! | GAAACTTAAGATTAAGTTAA+AGG | - | chr1.4:71312426-71312445 | MS.gene21349:intron | 20.0% |
| !! | TGAAACATTCTTAATAGTAT+AGG | + | chr1.4:71312184-71312203 | None:intergenic | 20.0% |
| !! | TTCAATTAGAGAATTAAGAA+AGG | + | chr1.4:71312927-71312946 | None:intergenic | 20.0% |
| !!! | GATGATCAAAAGAAATTTTA+TGG | - | chr1.4:71312713-71312732 | MS.gene21349:CDS | 20.0% |
| !!! | TGATCAAAAGAAATTTTATG+GGG | - | chr1.4:71312715-71312734 | MS.gene21349:CDS | 20.0% |
| ! | AACATATTTAACCCAAAATC+GGG | + | chr1.4:71311907-71311926 | None:intergenic | 25.0% |
| ! | AATCTATAATTTACTTTCCC+TGG | - | chr1.4:71312506-71312525 | MS.gene21349:intron | 25.0% |
| ! | AATGTATTCAACAATGATCA+TGG | + | chr1.4:71311826-71311845 | None:intergenic | 25.0% |
| ! | AGTTATTGAAGATAAGTGTT+TGG | - | chr1.4:71312691-71312710 | MS.gene21349:CDS | 25.0% |
| ! | CAACATATTTAACCCAAAAT+CGG | + | chr1.4:71311908-71311927 | None:intergenic | 25.0% |
| ! | GAATGGTTAAGTATAACTTA+TGG | - | chr1.4:71312316-71312335 | MS.gene21349:intron | 25.0% |
| ! | GGATCAATATTTACAGATTT+CGG | - | chr1.4:71312592-71312611 | MS.gene21349:intron | 25.0% |
| ! | GTAATAATTATAAGACACCA+GGG | + | chr1.4:71312526-71312545 | None:intergenic | 25.0% |
| ! | TATCAAATTTATTGAGGTTC+AGG | - | chr1.4:71312778-71312797 | MS.gene21349:CDS | 25.0% |
| ! | TGATTCAGACTAACAATATT+TGG | - | chr1.4:71312571-71312590 | MS.gene21349:intron | 25.0% |
| ! | TTCTCTAATTGAAAAAGTCA+AGG | - | chr1.4:71312934-71312953 | MS.gene21349:CDS | 25.0% |
| ! | TTGAATACATTGATGAGATA+TGG | - | chr1.4:71311835-71311854 | MS.gene21349:CDS | 25.0% |
| ! | TTTATGTTCAAAAACGTCAA+CGG | + | chr1.4:71312368-71312387 | None:intergenic | 25.0% |
| !! | GATCAAAAGAAATTTTATGG+GGG | - | chr1.4:71312716-71312735 | MS.gene21349:CDS | 25.0% |
| !! | GGTTAAATATGTTGATGAAT+TGG | - | chr1.4:71311914-71311933 | MS.gene21349:CDS | 25.0% |
| !! | GTATAGTCCTTTTACTTTAA+GGG | - | chr1.4:71311656-71311675 | MS.gene21349:CDS | 25.0% |
| AACTTTGCCTATAAAATGAG+TGG | + | chr1.4:71312052-71312071 | None:intergenic | 30.0% | |
| AGCTATGTCTACAATGTTAA+TGG | + | chr1.4:71312747-71312766 | None:intergenic | 30.0% | |
| AGTATGGACCTTAAATTTGA+AGG | - | chr1.4:71311680-71311699 | MS.gene21349:CDS | 30.0% | |
| ATGTATTGTGCAAGTACAAT+TGG | + | chr1.4:71312026-71312045 | None:intergenic | 30.0% | |
| CATACTACCCTTAAAGTAAA+AGG | + | chr1.4:71311666-71311685 | None:intergenic | 30.0% | |
| GGTAATAATTATAAGACACC+AGG | + | chr1.4:71312527-71312546 | None:intergenic | 30.0% | |
| GTATGGACCTTAAATTTGAA+GGG | - | chr1.4:71311681-71311700 | MS.gene21349:CDS | 30.0% | |
| TAAACCATAAATGCAATCGA+GGG | + | chr1.4:71312844-71312863 | None:intergenic | 30.0% | |
| TATACCATATGAGAACATAG+AGG | - | chr1.4:71311704-71311723 | MS.gene21349:CDS | 30.0% | |
| TGAGATGGTTAGAACATATT+AGG | + | chr1.4:71312548-71312567 | None:intergenic | 30.0% | |
| TGGTATACCCTTCAAATTTA+AGG | + | chr1.4:71311691-71311710 | None:intergenic | 30.0% | |
| TTAAACCATAAATGCAATCG+AGG | + | chr1.4:71312845-71312864 | None:intergenic | 30.0% | |
| ! | ACATGTTCCACTCATTTTAT+AGG | - | chr1.4:71312042-71312061 | MS.gene21349:intron | 30.0% |
| ! | GGTATAGTCCTTTTACTTTA+AGG | - | chr1.4:71311655-71311674 | MS.gene21349:CDS | 30.0% |
| !! | CTTTTACTTTAAGGGTAGTA+TGG | - | chr1.4:71311664-71311683 | MS.gene21349:CDS | 30.0% |
| AACATTGTAGACATAGCTCT+TGG | - | chr1.4:71312749-71312768 | MS.gene21349:CDS | 35.0% | |
| AATGATCATGGACTCACATA+TGG | + | chr1.4:71311814-71311833 | None:intergenic | 35.0% | |
| ATGATCATGGACTCACATAT+GGG | + | chr1.4:71311813-71311832 | None:intergenic | 35.0% | |
| CAATTGGATTATGATCACGA+TGG | + | chr1.4:71312010-71312029 | None:intergenic | 35.0% | |
| TAGTCTGAATCAAGATGAGA+TGG | + | chr1.4:71312563-71312582 | None:intergenic | 35.0% | |
| TCTTCCTCTATGTTCTCATA+TGG | + | chr1.4:71311711-71311730 | None:intergenic | 35.0% | |
| TTTACAGATTTCGGCAATTG+CGG | - | chr1.4:71312601-71312620 | MS.gene21349:intron | 35.0% | |
| ! | ACTGGAGTTTTCTTGTGTAT+TGG | + | chr1.4:71311771-71311790 | None:intergenic | 35.0% |
| ! | AGGTGAAACTACATGGATTT+TGG | - | chr1.4:71311634-71311653 | MS.gene21349:CDS | 35.0% |
| ! | CTGGAGTTTTCTTGTGTATT+GGG | + | chr1.4:71311770-71311789 | None:intergenic | 35.0% |
| !! | CTTCACCAATTTTGCTATAG+AGG | + | chr1.4:71312631-71312650 | None:intergenic | 35.0% |
| !!! | CATCTTTTTTCGTGTCAAGT+TGG | + | chr1.4:71312394-71312413 | None:intergenic | 35.0% |
| AGAAGGCCAGAGAGAATTTA+TGG | - | chr1.4:71312657-71312676 | MS.gene21349:intron | 40.0% | |
| ATAGGCAAAGTTACACCATG+AGG | - | chr1.4:71312060-71312079 | MS.gene21349:intron | 40.0% | |
| GAAGGCCAGAGAGAATTTAT+GGG | - | chr1.4:71312658-71312677 | MS.gene21349:intron | 40.0% | |
| GATATGGTCACACAACTCAT+TGG | - | chr1.4:71311851-71311870 | MS.gene21349:CDS | 40.0% | |
| GATTCCCTCGATTGCATTTA+TGG | - | chr1.4:71312837-71312856 | MS.gene21349:CDS | 40.0% | |
| GCACTCCTCTATAGCAAAAT+TGG | - | chr1.4:71312623-71312642 | MS.gene21349:intron | 40.0% | |
| TGAAAAAGTCAAGGCAGTCA+AGG | - | chr1.4:71312943-71312962 | MS.gene21349:CDS | 40.0% | |
| TTTCCATCATGAACTAGCAC+TGG | + | chr1.4:71311789-71311808 | None:intergenic | 40.0% | |
| !!! | AGGGGTGTTTTCTTTGATGA+CGG | + | chr1.4:71312885-71312904 | None:intergenic | 40.0% |
| AATTGGTGAAGAGCGAGAGA+AGG | - | chr1.4:71312640-71312659 | MS.gene21349:intron | 45.0% | |
| ACTCCAGTGCTAGTTCATGA+TGG | - | chr1.4:71311783-71311802 | MS.gene21349:CDS | 45.0% | |
| ATGGCAGAGGTGAAACTACA+TGG | - | chr1.4:71311627-71311646 | MS.gene21349:CDS | 45.0% | |
| TCGCTCCCATAAATTCTCTC+TGG | + | chr1.4:71312666-71312685 | None:intergenic | 45.0% | |
| !! | GGGGTGTTTTCTTTGATGAC+GGG | + | chr1.4:71312884-71312903 | None:intergenic | 45.0% |
| !! | ATAAAAAAAAATTAAGTTAA+AGG | - | chr1.4:71312457-71312476 | MS.gene21349:intron | 5.0% |
| CACCAACTTCTCTTGGTCAG+GGG | + | chr1.4:71312903-71312922 | None:intergenic | 50.0% | |
| CCACCAACTTCTCTTGGTCA+GGG | + | chr1.4:71312904-71312923 | None:intergenic | 50.0% | |
| GAAAGGCCACCAACTTCTCT+TGG | + | chr1.4:71312910-71312929 | None:intergenic | 50.0% | |
| ! | ACAGAGCTCAAGCCCGATTT+TGG | - | chr1.4:71311892-71311911 | MS.gene21349:CDS | 50.0% |
| ! | CAGAGCTCAAGCCCGATTTT+GGG | - | chr1.4:71311893-71311912 | MS.gene21349:CDS | 50.0% |
| CACCCCTGACCAAGAGAAGT+TGG | - | chr1.4:71312898-71312917 | MS.gene21349:CDS | 55.0% | |
| CCCTGACCAAGAGAAGTTGG+TGG | - | chr1.4:71312901-71312920 | MS.gene21349:CDS | 55.0% | |
| CGGGCTTGAGCTCTGTCATA+GGG | + | chr1.4:71311888-71311907 | None:intergenic | 55.0% | |
| GCCACCAACTTCTCTTGGTC+AGG | + | chr1.4:71312905-71312924 | None:intergenic | 55.0% | |
| GCTCTGTCATAGGGATCAGC+AGG | + | chr1.4:71311879-71311898 | None:intergenic | 55.0% | |
| TCGGGCTTGAGCTCTGTCAT+AGG | + | chr1.4:71311889-71311908 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 71311627 | 71312976 | 71311627 | ID=MS.gene21349 |
| chr1.4 | mRNA | 71311627 | 71312976 | 71311627 | ID=MS.gene21349.t1;Parent=MS.gene21349 |
| chr1.4 | exon | 71312668 | 71312976 | 71312668 | ID=MS.gene21349.t1.exon1;Parent=MS.gene21349.t1 |
| chr1.4 | CDS | 71312668 | 71312976 | 71312668 | ID=cds.MS.gene21349.t1;Parent=MS.gene21349.t1 |
| chr1.4 | exon | 71311627 | 71311995 | 71311627 | ID=MS.gene21349.t1.exon2;Parent=MS.gene21349.t1 |
| chr1.4 | CDS | 71311627 | 71311995 | 71311627 | ID=cds.MS.gene21349.t1;Parent=MS.gene21349.t1 |
| Gene Sequence |
| Protein sequence |
