AlfalfaGEDB | MS.gene21380

M. sativa cultivar XinJiangDaYe / MS.gene21380

KEGG: -
GO: -
PFAM: PF13639.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21380.t1	XP_003591673.1	96.1	153	5	1	3	154	4	156	5.50E-79	303.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21380.t1	Q9FG21	55.6	81	29	2	79	153	98	177	1.1e-19	97.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21380.t1	G7ZYD4	96.1	153	5	1	3	154	4	156	4.0e-79	303.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051385	MS.gene21380	0.81051	1.11E-50	-1.69E-46
MS.gene051996	MS.gene21380	0.82703	1.96E-54	-1.69E-46
MS.gene052290	MS.gene21380	-0.802262	6.10E-49	-1.69E-46
MS.gene053406	MS.gene21380	0.800051	1.73E-48	-1.69E-46
MS.gene054421	MS.gene21380	0.834531	2.84E-56	-1.69E-46
MS.gene054742	MS.gene21380	0.83204	1.19E-55	-1.69E-46
MS.gene055595	MS.gene21380	0.80785	4.13E-50	-1.69E-46
MS.gene055597	MS.gene21380	0.800562	1.36E-48	-1.69E-46
MS.gene057926	MS.gene21380	-0.800835	1.20E-48	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21380.t1	MTR_1g090450	96.078	153	5	1	3	154	4	156	3.42e-108	305
MS.gene21380.t1	MTR_1g056350	52.326	86	37	2	69	153	69	151	1.54e-26	98.6
MS.gene21380.t1	MTR_1g090480	36.646	161	85	6	1	154	1	151	4.14e-25	94.7
MS.gene21380.t1	MTR_1g090460	51.429	70	32	1	80	147	68	137	1.61e-19	80.1
MS.gene21380.t1	MTR_5g064990	34.965	143	81	6	10	147	50	185	2.79e-19	83.2
MS.gene21380.t1	MTR_3g012550	29.299	157	98	4	7	153	3	156	3.68e-19	79.7
MS.gene21380.t1	MTR_1g090440	73.171	41	11	0	109	149	120	160	1.33e-18	77.8
MS.gene21380.t1	MTR_1g492830	32.540	126	83	2	25	149	8	132	1.58e-18	79.0
MS.gene21380.t1	MTR_7g076250	38.017	121	60	5	32	147	22	132	2.01e-18	78.2
MS.gene21380.t1	MTR_7g079280	37.805	82	51	0	72	153	75	156	4.78e-18	76.6
MS.gene21380.t1	MTR_6g087150	36.000	125	68	4	25	147	47	161	5.85e-18	79.3
MS.gene21380.t1	MTR_3g094000	32.215	149	86	6	5	149	26	163	6.72e-18	76.3
MS.gene21380.t1	MTR_2g090905	46.154	65	31	1	87	147	49	113	4.42e-17	72.8
MS.gene21380.t1	MTR_3g110190	34.646	127	69	4	25	147	18	134	4.95e-17	76.6
MS.gene21380.t1	MTR_8g028465	29.932	147	85	3	21	153	20	162	5.01e-17	74.7
MS.gene21380.t1	MTR_5g024730	30.714	140	83	4	10	148	22	148	5.69e-17	74.7
MS.gene21380.t1	MTR_7g073200	32.680	153	90	5	2	153	15	155	1.08e-16	73.2
MS.gene21380.t1	MTR_3g099650	34.375	128	68	6	25	147	62	178	1.10e-16	75.9
MS.gene21380.t1	MTR_6g055030	47.619	63	32	1	86	147	106	168	2.08e-16	74.7
MS.gene21380.t1	MTR_8g063660	31.655	139	84	5	20	149	2	138	2.83e-16	74.3
MS.gene21380.t1	MTR_8g099515	32.258	124	77	2	26	149	265	381	4.21e-16	74.3
MS.gene21380.t1	MTR_2g090950	43.662	71	36	1	81	147	95	165	4.51e-16	72.8
MS.gene21380.t1	MTR_7g113800	30.667	150	86	7	2	147	27	162	5.12e-16	73.9
MS.gene21380.t1	MTR_8g073120	29.167	144	88	4	5	147	10	140	5.16e-16	72.0
MS.gene21380.t1	MTR_5g026730	29.452	146	91	5	12	153	5	142	6.34e-16	71.2
MS.gene21380.t1	MTR_1g100737	42.647	68	36	1	83	147	98	165	6.76e-16	71.6
MS.gene21380.t1	MTR_5g009200	30.952	126	82	2	24	147	270	392	7.85e-16	73.6
MS.gene21380.t1	MTR_8g032690	58.140	43	18	0	105	147	19	61	8.11e-16	69.3
MS.gene21380.t1	MTR_2g096350	37.647	85	44	2	66	147	99	177	9.28e-16	71.6
MS.gene21380.t1	MTR_5g064980	41.791	67	36	2	83	147	114	179	2.08e-15	72.4
MS.gene21380.t1	MTR_1g082550	32.000	125	76	4	25	147	52	169	2.17e-15	72.4
MS.gene21380.t1	MTR_8g092985	28.571	154	100	3	1	153	42	186	2.57e-15	70.5
MS.gene21380.t1	MTR_2g044570	44.928	69	35	2	87	153	64	131	4.35e-15	70.9
MS.gene21380.t1	MTR_3g095560	30.719	153	82	5	5	148	42	179	5.46e-15	70.1
MS.gene21380.t1	MTR_5g009210	28.667	150	96	4	3	147	214	357	5.60e-15	70.9
MS.gene21380.t1	MTR_3g100400	52.000	50	24	0	98	147	149	198	6.20e-15	71.2
MS.gene21380.t1	MTR_5g034790	28.986	138	83	5	25	149	51	186	1.26e-14	70.1
MS.gene21380.t1	MTR_5g009190	29.134	127	85	2	23	147	213	336	1.85e-14	69.3
MS.gene21380.t1	MTR_6g007680	33.333	123	61	3	25	147	7	108	2.01e-14	66.6
MS.gene21380.t1	MTR_5g076990	29.412	136	76	3	21	147	24	148	2.21e-14	68.9
MS.gene21380.t1	MTR_3g086700	29.839	124	73	4	26	147	6	117	2.27e-14	67.4
MS.gene21380.t1	MTR_4g063070	24.812	133	88	2	24	147	249	378	2.49e-14	69.3
MS.gene21380.t1	MTR_8g066740	41.429	70	39	1	80	147	79	148	2.94e-14	68.6
MS.gene21380.t1	MTR_4g030070	44.118	68	35	1	84	151	92	156	3.22e-14	67.8
MS.gene21380.t1	MTR_3g086730	42.857	63	33	2	87	147	56	117	4.49e-14	67.4
MS.gene21380.t1	MTR_5g066250	34.524	84	46	2	64	147	128	202	4.55e-14	68.6
MS.gene21380.t1	MTR_7g079290	55.814	43	19	0	105	147	155	197	5.94e-14	66.6
MS.gene21380.t1	MTR_6g055030	51.852	54	25	1	95	147	84	137	6.44e-14	67.4
MS.gene21380.t1	MTR_3g071300	27.465	142	90	4	13	149	17	150	6.71e-14	65.9
MS.gene21380.t1	MTR_8g066780	28.777	139	89	4	22	153	55	190	7.45e-14	67.8
MS.gene21380.t1	MTR_5g022920	38.710	62	38	0	87	148	171	232	7.49e-14	66.6
MS.gene21380.t1	MTR_8g071815	31.655	139	82	5	17	153	11	138	8.55e-14	65.5
MS.gene21380.t1	MTR_8g089880	39.655	58	35	0	90	147	138	195	1.06e-13	67.0
MS.gene21380.t1	MTR_7g117350	32.331	133	78	4	25	153	238	362	1.11e-13	67.4
MS.gene21380.t1	MTR_7g117350	32.331	133	78	4	25	153	246	370	1.20e-13	67.4
MS.gene21380.t1	MTR_5g064890	28.571	168	92	6	2	147	35	196	1.20e-13	67.4
MS.gene21380.t1	MTR_5g026720	48.000	50	26	0	104	153	92	141	1.34e-13	64.7
MS.gene21380.t1	MTR_6g007737	40.580	69	38	2	80	147	135	201	1.58e-13	67.0
MS.gene21380.t1	MTR_8g099495	38.356	73	45	0	82	154	324	396	2.16e-13	66.6
MS.gene21380.t1	MTR_4g129420	48.980	49	25	0	103	151	142	190	2.95e-13	66.2
MS.gene21380.t1	MTR_5g092790	48.837	43	22	0	105	147	185	227	4.00e-13	64.7
MS.gene21380.t1	MTR_2g055790	47.917	48	25	0	100	147	95	142	4.02e-13	64.3
MS.gene21380.t1	MTR_8g092970	41.176	68	39	1	86	153	113	179	4.52e-13	64.3
MS.gene21380.t1	MTR_8g092990	41.176	68	39	1	86	153	123	189	4.53e-13	64.7
MS.gene21380.t1	MTR_2g035800	28.873	142	88	5	8	148	16	145	5.19e-13	63.2
MS.gene21380.t1	MTR_5g092750	48.837	43	22	0	105	147	185	227	5.43e-13	64.3
MS.gene21380.t1	MTR_8g074900	44.000	50	28	0	99	148	174	223	5.61e-13	64.3
MS.gene21380.t1	MTR_3g464780	37.209	86	51	2	67	149	91	176	5.86e-13	64.7
MS.gene21380.t1	MTR_8g009190	38.889	72	43	1	83	153	82	153	5.90e-13	65.1
MS.gene21380.t1	MTR_7g096690	25.735	136	89	3	25	154	20	149	8.16e-13	64.7
MS.gene21380.t1	MTR_7g117540	46.154	52	27	1	103	154	99	149	1.02e-12	64.3
MS.gene21380.t1	MTR_8g093010	26.144	153	98	4	2	153	44	182	1.04e-12	63.5
MS.gene21380.t1	MTR_1g043410	36.508	63	38	1	89	149	105	167	1.14e-12	64.3
MS.gene21380.t1	MTR_3g078450	34.921	63	41	0	85	147	84	146	1.15e-12	63.2
MS.gene21380.t1	MTR_5g082940	35.294	68	44	0	82	149	80	147	1.15e-12	62.4
MS.gene21380.t1	MTR_5g030010	39.344	61	36	1	93	152	135	195	1.57e-12	64.3
MS.gene21380.t1	MTR_8g027745	32.432	74	50	0	80	153	289	362	1.75e-12	63.9
MS.gene21380.t1	MTR_6g007670	39.744	78	44	2	70	147	1	75	1.86e-12	63.2
MS.gene21380.t1	MTR_6g007670	41.667	72	41	1	76	147	144	214	1.89e-11	60.5
MS.gene21380.t1	MTR_2g009310	51.163	43	21	0	105	147	161	203	2.04e-12	63.9
MS.gene21380.t1	MTR_3g078120	36.923	65	41	0	83	147	63	127	2.14e-12	61.2
MS.gene21380.t1	MTR_1g074190	38.462	52	32	0	98	149	124	175	2.23e-12	63.5
MS.gene21380.t1	MTR_8g092930	37.500	72	44	1	82	153	117	187	2.31e-12	62.8
MS.gene21380.t1	MTR_3g116000	52.273	44	21	0	105	148	104	147	3.22e-12	61.6
MS.gene21380.t1	MTR_8g092960	26.316	152	93	3	12	153	36	178	3.29e-12	62.0
MS.gene21380.t1	MTR_2g041200	32.061	131	73	5	24	147	30	151	3.32e-12	61.2
MS.gene21380.t1	MTR_7g116200	39.344	61	34	1	87	147	78	135	4.77e-12	60.8
MS.gene21380.t1	MTR_1g070140	42.000	50	29	0	105	154	130	179	5.63e-12	62.4
MS.gene21380.t1	MTR_4g093830	51.163	43	21	0	105	147	152	194	6.03e-12	62.4
MS.gene21380.t1	MTR_3g091200	35.294	68	44	0	82	149	308	375	7.32e-12	62.4
MS.gene21380.t1	MTR_4g120270	37.255	51	32	0	97	147	96	146	7.80e-12	61.6
MS.gene21380.t1	MTR_8g092840	29.710	138	90	5	17	153	57	188	7.87e-12	61.2
MS.gene21380.t1	MTR_4g094725	51.163	43	21	0	105	147	106	148	8.43e-12	59.7
MS.gene21380.t1	MTR_1g066430	42.188	64	34	1	88	151	637	697	1.44e-11	61.6
MS.gene21380.t1	MTR_3g078470	36.066	61	39	0	87	147	86	146	1.67e-11	60.1
MS.gene21380.t1	MTR_7g116210	38.983	59	33	1	89	147	22	77	2.09e-11	57.8
MS.gene21380.t1	MTR_8g023400	48.889	45	23	0	103	147	115	159	2.51e-11	60.5
MS.gene21380.t1	MTR_4g106680	36.905	84	43	3	64	147	101	174	2.88e-11	60.5
MS.gene21380.t1	MTR_4g108830	37.143	70	44	0	79	148	120	189	3.23e-11	58.9
MS.gene21380.t1	MTR_4g108830	37.143	70	44	0	79	148	148	217	3.71e-11	59.3
MS.gene21380.t1	MTR_5g071930	32.558	86	53	1	62	147	51	131	4.66e-11	58.5
MS.gene21380.t1	MTR_7g116180	34.375	64	41	1	85	147	75	138	5.69e-11	58.2
MS.gene21380.t1	MTR_1g070425	34.375	64	41	1	85	147	76	139	8.56e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21380.t1	AT5G06490	55.556	81	29	2	79	153	98	177	3.84e-25	95.9
MS.gene21380.t1	AT2G35910	50.000	74	35	1	80	153	124	195	4.13e-22	88.2
MS.gene21380.t1	AT4G10160	33.094	139	85	3	11	149	11	141	2.04e-19	81.6
MS.gene21380.t1	AT5G53110	34.146	123	75	2	27	149	258	374	1.84e-18	80.9
MS.gene21380.t1	AT2G46493	27.200	125	89	1	25	149	60	182	6.86e-18	76.6
MS.gene21380.t1	AT1G23980	31.343	134	79	4	25	147	55	186	1.50e-17	78.2
MS.gene21380.t1	AT2G46160	44.444	72	34	1	86	151	113	184	4.75e-17	75.1
MS.gene21380.t1	AT2G46160	44.444	72	34	1	86	151	113	184	4.75e-17	75.1
MS.gene21380.t1	AT1G76410	29.730	148	89	4	2	148	14	147	1.37e-16	73.2
MS.gene21380.t1	AT4G28890	32.215	149	85	5	10	147	22	165	2.01e-16	75.5
MS.gene21380.t1	AT1G20823	31.333	150	92	6	4	148	11	154	5.02e-16	72.0
MS.gene21380.t1	AT2G35000	30.709	127	79	2	22	147	59	177	6.06e-16	73.9
MS.gene21380.t1	AT4G10150	33.835	133	72	6	24	149	32	155	6.18e-16	72.4
MS.gene21380.t1	AT2G25410	29.577	142	89	3	14	147	231	369	7.80e-16	73.6
MS.gene21380.t1	AT3G61550	47.368	57	30	0	97	153	128	184	9.35e-16	71.6
MS.gene21380.t1	AT1G28040	28.682	129	84	2	26	149	172	297	1.01e-15	72.8
MS.gene21380.t1	AT5G07040	29.927	137	86	4	21	153	12	142	1.13e-15	70.1
MS.gene21380.t1	AT3G05200	45.455	66	33	2	84	147	106	170	1.71e-15	72.8
MS.gene21380.t1	AT4G40070	38.889	72	43	1	84	154	102	173	2.11e-15	72.0
MS.gene21380.t1	AT1G35330	43.939	66	34	2	86	149	109	173	3.06e-15	71.6
MS.gene21380.t1	AT2G34990	26.154	130	94	2	19	147	10	138	3.37e-15	71.2
MS.gene21380.t1	AT2G34990	26.154	130	94	2	19	147	32	160	3.91e-15	71.2
MS.gene21380.t1	AT5G27420	37.209	86	48	3	64	147	85	166	4.66e-15	71.2
MS.gene21380.t1	AT4G17905	35.135	111	66	2	47	154	123	230	6.37e-15	70.9
MS.gene21380.t1	AT2G20030	29.545	132	76	4	23	147	45	166	7.17e-15	70.9
MS.gene21380.t1	AT4G17905	35.135	111	66	2	47	154	97	204	7.84e-15	70.5
MS.gene21380.t1	AT1G04360	29.771	131	83	2	25	149	51	178	1.21e-14	70.1
MS.gene21380.t1	AT5G05280	52.000	50	24	0	102	151	110	159	1.33e-14	67.8
MS.gene21380.t1	AT3G03550	46.552	58	31	0	90	147	144	201	1.89e-14	69.7
MS.gene21380.t1	AT3G48030	38.571	70	42	1	80	149	105	173	2.80e-14	68.6
MS.gene21380.t1	AT4G09120	34.940	83	51	2	67	147	84	165	2.82e-14	68.9
MS.gene21380.t1	AT1G72200	30.400	125	82	3	25	147	65	186	3.45e-14	68.9
MS.gene21380.t1	AT3G48030	38.571	70	42	1	80	149	183	251	4.01e-14	68.6
MS.gene21380.t1	AT1G72310	39.773	88	43	3	67	152	95	174	4.02e-14	68.6
MS.gene21380.t1	AT5G05810	49.020	51	26	0	97	147	138	188	4.92e-14	68.6
MS.gene21380.t1	AT3G18773	32.432	148	91	6	1	147	33	172	8.02e-14	66.6
MS.gene21380.t1	AT2G46494	29.688	128	75	3	33	149	237	360	8.11e-14	67.8
MS.gene21380.t1	AT2G47560	44.262	61	34	0	87	147	90	150	8.82e-14	66.6
MS.gene21380.t1	AT2G18650	52.083	48	23	0	105	152	126	173	9.37e-14	67.8
MS.gene21380.t1	AT4G35840	30.233	129	80	3	30	148	106	234	9.48e-14	66.6
MS.gene21380.t1	AT4G09130	39.706	68	34	2	84	147	98	162	9.80e-14	67.4
MS.gene21380.t1	AT3G62690	43.284	67	36	1	81	147	91	155	1.04e-13	66.6
MS.gene21380.t1	AT4G09110	32.394	142	83	6	8	147	35	165	1.04e-13	67.0
MS.gene21380.t1	AT4G33565	45.283	53	29	0	95	147	207	259	1.19e-13	67.4
MS.gene21380.t1	AT2G46495	27.273	143	95	4	11	149	227	364	1.65e-13	67.0
MS.gene21380.t1	AT3G10910	48.000	50	26	0	102	151	111	160	2.04e-13	64.7
MS.gene21380.t1	AT5G17600	43.103	58	33	0	90	147	127	184	2.20e-13	66.6
MS.gene21380.t1	AT2G17730	28.682	129	82	2	30	148	111	239	2.45e-13	65.5
MS.gene21380.t1	AT1G49220	32.847	137	82	5	12	147	50	177	2.76e-13	65.5
MS.gene21380.t1	AT4G30400	51.111	45	22	0	103	147	132	176	2.80e-13	66.6
MS.gene21380.t1	AT4G35480	30.000	150	96	4	6	148	9	156	2.93e-13	64.7
MS.gene21380.t1	AT2G27940	43.103	58	33	0	96	153	131	188	3.38e-13	65.1
MS.gene21380.t1	AT5G57750	53.488	43	20	0	105	147	122	164	3.50e-13	64.7
MS.gene21380.t1	AT3G20395	52.083	48	23	0	100	147	166	213	3.50e-13	64.7
MS.gene21380.t1	AT2G17450	26.573	143	90	3	10	148	14	145	3.72e-13	63.9
MS.gene21380.t1	AT2G42350	48.980	49	25	0	105	153	100	148	3.77e-13	64.7
MS.gene21380.t1	AT3G16720	51.111	45	22	0	103	147	117	161	3.78e-13	65.5
MS.gene21380.t1	AT5G66070	35.802	81	45	2	68	148	146	219	4.10e-13	64.7
MS.gene21380.t1	AT5G66070	35.802	81	45	2	68	148	146	219	4.10e-13	64.7
MS.gene21380.t1	AT5G10380	48.936	47	24	0	105	151	135	181	4.27e-13	65.5
MS.gene21380.t1	AT4G09100	35.211	71	45	1	82	151	61	131	4.31e-13	62.8
MS.gene21380.t1	AT1G49210	32.847	137	82	5	12	147	50	177	4.45e-13	64.7
MS.gene21380.t1	AT5G66070	35.802	81	45	2	68	148	170	243	4.67e-13	64.7
MS.gene21380.t1	AT5G01880	44.898	49	27	0	101	149	101	149	4.86e-13	63.2
MS.gene21380.t1	AT1G33480	53.488	43	20	0	105	147	100	142	5.82e-13	64.7
MS.gene21380.t1	AT1G22500	30.469	128	80	5	23	147	39	160	7.13e-13	65.1
MS.gene21380.t1	AT2G42360	48.980	49	25	0	99	147	102	150	8.38e-13	63.9
MS.gene21380.t1	AT1G74410	51.111	45	22	0	105	149	176	220	9.77e-13	63.5
MS.gene21380.t1	AT5G36001	38.462	65	36	1	89	149	244	308	1.01e-12	64.7
MS.gene21380.t1	AT1G71980	43.056	72	38	3	84	154	212	281	1.30e-12	64.7
MS.gene21380.t1	AT1G72220	48.837	43	22	0	105	147	177	219	1.34e-12	64.3
MS.gene21380.t1	AT2G44578	42.105	57	33	0	91	147	56	112	1.45e-12	61.6
MS.gene21380.t1	AT1G49230	28.986	138	81	4	14	147	49	173	1.92e-12	62.8
MS.gene21380.t1	AT3G14320	50.000	46	23	0	103	148	86	131	2.59e-12	62.4
MS.gene21380.t1	AT1G53820	46.809	47	25	0	103	149	118	164	3.13e-12	63.2
MS.gene21380.t1	AT5G40250	51.111	45	22	0	103	147	141	185	3.21e-12	63.2
MS.gene21380.t1	AT3G60220	38.889	72	43	1	83	153	94	165	3.44e-12	63.2
MS.gene21380.t1	AT1G35625	37.662	77	45	3	73	148	202	276	3.54e-12	63.2
MS.gene21380.t1	AT1G35630	32.800	125	67	6	29	148	164	276	4.19e-12	62.8
MS.gene21380.t1	AT4G15975	43.478	46	26	0	102	147	73	118	5.45e-12	61.6
MS.gene21380.t1	AT5G43420	43.478	46	26	0	102	147	135	180	5.46e-12	62.8
MS.gene21380.t1	AT5G58580	52.000	50	24	0	105	154	138	187	5.71e-12	62.4
MS.gene21380.t1	AT1G49200	32.374	139	80	6	12	147	51	178	6.38e-12	61.6
MS.gene21380.t1	AT3G18930	33.735	83	47	1	80	154	123	205	6.50e-12	62.4
MS.gene21380.t1	AT3G18930	33.735	83	47	1	80	154	123	205	6.50e-12	62.4
MS.gene21380.t1	AT3G18930	33.735	83	47	1	80	154	123	205	6.50e-12	62.4
MS.gene21380.t1	AT2G46495	37.313	67	41	1	84	149	270	336	6.90e-12	62.4
MS.gene21380.t1	AT4G38140	46.296	54	28	1	102	154	59	112	8.60e-12	59.7
MS.gene21380.t1	AT2G35420	40.323	62	35	1	86	147	86	145	1.05e-11	61.2
MS.gene21380.t1	AT1G32361	37.313	67	38	2	83	149	136	198	1.06e-11	61.6
MS.gene21380.t1	AT1G53010	38.272	81	44	2	72	148	95	173	1.53e-11	59.7
MS.gene21380.t1	AT1G80400	45.312	64	34	1	84	147	334	396	1.60e-11	61.2
MS.gene21380.t1	AT5G37270	40.278	72	38	2	82	148	127	198	1.79e-11	60.1
MS.gene21380.t1	AT3G55530	31.522	92	60	2	58	147	162	252	1.98e-11	60.5
MS.gene21380.t1	AT5G37250	40.278	72	38	2	82	148	127	198	2.02e-11	59.7
MS.gene21380.t1	AT5G37250	40.278	72	38	2	82	148	111	182	2.16e-11	59.7
MS.gene21380.t1	AT1G22670	50.000	56	26	2	96	150	223	277	3.65e-11	60.5
MS.gene21380.t1	AT5G37230	38.889	72	39	2	82	148	127	198	3.98e-11	58.9
MS.gene21380.t1	AT4G26400	47.917	48	24	1	100	147	236	282	4.50e-11	60.1
MS.gene21380.t1	AT4G26400	47.917	48	24	1	100	147	236	282	4.50e-11	60.1
MS.gene21380.t1	AT5G41400	31.915	94	51	3	67	147	56	149	5.13e-11	58.2
MS.gene21380.t1	AT3G11110	51.163	43	21	0	107	149	109	151	8.68e-11	57.4
MS.gene21380.t1	AT4G17920	28.462	130	87	3	22	148	27	153	8.93e-11	58.9

Find 23 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATATCTTAATACTTGTATT+TGG	0.241998	1.4:-71653553	MS.gene21380:CDS
TGTATTTGGTCTCGTATTCT+TGG	0.251746	1.4:-71653539	MS.gene21380:CDS
TCTGAGAGTATAAAAGTTTC+GGG	0.311980	1.4:+71653365	None:intergenic
ATCTGAGAGTATAAAAGTTT+CGG	0.329103	1.4:+71653364	None:intergenic
ATTAGTTGCTCTATTTGCTT+AGG	0.406658	1.4:-71653316	MS.gene21380:CDS
TACTCTCAGATTCAGAAGAA+TGG	0.427690	1.4:-71653352	MS.gene21380:CDS
ATGACGATGTGGTGGAAAAC+CGG	0.430831	1.4:+71653447	None:intergenic
TGATAAAGATGACCACAATC+AGG	0.493423	1.4:+71653259	None:intergenic
ATGTTGCTTGTGTTGATCCA+TGG	0.521110	1.4:-71653237	MS.gene21380:CDS
TTGAGGTTACTTCCTGATTG+TGG	0.530530	1.4:-71653271	MS.gene21380:CDS
TCGTCATGAAGACTCAATCA+TGG	0.545902	1.4:-71653431	MS.gene21380:CDS
ATAAAGAAAGTGACATGTTG+AGG	0.576166	1.4:-71653288	MS.gene21380:CDS
TCAAAACCGTTGTTGTTGTG+TGG	0.584708	1.4:+71653592	None:intergenic
GTGGAATGTAACATGAGCCA+TGG	0.599564	1.4:+71653220	None:intergenic
AAACCGTTGTTGTTGTGTGG+AGG	0.603017	1.4:+71653595	None:intergenic
GTTGTTGTGTGGAGGTTCCG+AGG	0.639516	1.4:+71653603	None:intergenic
GTATCCTTCAAAACTTGTGT+CGG	0.641573	1.4:+71653387	None:intergenic
GAGTCTTCATGACGATGTGG+TGG	0.660756	1.4:+71653439	None:intergenic
GAGCAACAACAACGGCACCT+CGG	0.664145	1.4:-71653620	MS.gene21380:CDS
GAAGACTCAATCATGGAACA+AGG	0.664922	1.4:-71653424	MS.gene21380:CDS
GAACCTCCACACAACAACAA+CGG	0.709301	1.4:-71653598	MS.gene21380:CDS
ATTGAGTCTTCATGACGATG+TGG	0.716521	1.4:+71653436	None:intergenic
AAGAAGATGAGCAACAACAA+CGG	0.717539	1.4:-71653628	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATATCTTAATACTTGTATT+TGG	-	chr1.4:71653249-71653268	MS.gene21380:CDS	15.0%
!!	AACATTCTCAATATTTTGTC+CGG	-	chr1.4:71653336-71653355	MS.gene21380:CDS	25.0%
!!	AGTGATGATTTTCTACATAT+GGG	+	chr1.4:71653612-71653631	None:intergenic	25.0%
!!	ATCTGAGAGTATAAAAGTTT+CGG	+	chr1.4:71653441-71653460	None:intergenic	25.0%
!!	TAGTGATGATTTTCTACATA+TGG	+	chr1.4:71653613-71653632	None:intergenic	25.0%
	ATAAAGAAAGTGACATGTTG+AGG	-	chr1.4:71653514-71653533	MS.gene21380:CDS	30.0%
	ATTAGTTGCTCTATTTGCTT+AGG	-	chr1.4:71653486-71653505	MS.gene21380:CDS	30.0%
!	TCTGAGAGTATAAAAGTTTC+GGG	+	chr1.4:71653440-71653459	None:intergenic	30.0%
	GTATCCTTCAAAACTTGTGT+CGG	+	chr1.4:71653418-71653437	None:intergenic	35.0%
	TACTCTCAGATTCAGAAGAA+TGG	-	chr1.4:71653450-71653469	MS.gene21380:CDS	35.0%
	TGATAAAGATGACCACAATC+AGG	+	chr1.4:71653546-71653565	None:intergenic	35.0%
	TGTATTTGGTCTCGTATTCT+TGG	-	chr1.4:71653263-71653282	MS.gene21380:CDS	35.0%
!	TTTTCTACATATGGGACAAG+TGG	+	chr1.4:71653604-71653623	None:intergenic	35.0%
	ATTGAGTCTTCATGACGATG+TGG	+	chr1.4:71653369-71653388	None:intergenic	40.0%
	GAAGACTCAATCATGGAACA+AGG	-	chr1.4:71653378-71653397	MS.gene21380:CDS	40.0%
	TCGTCATGAAGACTCAATCA+TGG	-	chr1.4:71653371-71653390	MS.gene21380:CDS	40.0%
	TTGAGGTTACTTCCTGATTG+TGG	-	chr1.4:71653531-71653550	MS.gene21380:CDS	40.0%
!	ATGTTGCTTGTGTTGATCCA+TGG	-	chr1.4:71653565-71653584	MS.gene21380:CDS	40.0%
!	TCAAAACCGTTGTTGTTGTG+TGG	+	chr1.4:71653213-71653232	None:intergenic	40.0%
!!	AACAACGGTTTTGACGCAAA+TGG	-	chr1.4:71653219-71653238	MS.gene21380:CDS	40.0%
!!	ACAACGGTTTTGACGCAAAT+GGG	-	chr1.4:71653220-71653239	MS.gene21380:CDS	40.0%
!!	CATACCGACACAAGTTTTGA+AGG	-	chr1.4:71653411-71653430	MS.gene21380:CDS	40.0%
	GAACCTCCACACAACAACAA+CGG	-	chr1.4:71653204-71653223	MS.gene21380:CDS	45.0%
	GTGGAATGTAACATGAGCCA+TGG	+	chr1.4:71653585-71653604	None:intergenic	45.0%
!	AAACCGTTGTTGTTGTGTGG+AGG	+	chr1.4:71653210-71653229	None:intergenic	45.0%
!	ATGACGATGTGGTGGAAAAC+CGG	+	chr1.4:71653358-71653377	None:intergenic	45.0%
	GAGTCTTCATGACGATGTGG+TGG	+	chr1.4:71653366-71653385	None:intergenic	50.0%
	GAGCAACAACAACGGCACCT+CGG	-	chr1.4:71653182-71653201	MS.gene21380:CDS	55.0%
	GTTGTTGTGTGGAGGTTCCG+AGG	+	chr1.4:71653202-71653221	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	71653180	71653644	71653180	ID=MS.gene21380
chr1.4	mRNA	71653180	71653644	71653180	ID=MS.gene21380.t1;Parent=MS.gene21380
chr1.4	exon	71653180	71653644	71653180	ID=MS.gene21380.t1.exon1;Parent=MS.gene21380.t1
chr1.4	CDS	71653180	71653644	71653180	ID=cds.MS.gene21380.t1;Parent=MS.gene21380.t1

Gene Sequence

>MS.gene21380

ATGAGCAACAACAACGGCACCTCGGAACCTCCACACAACAACAACGGTTTTGACGCAAATGGGTTCACATATATCTTAATACTTGTATTTGGTCTCGTATTCTTGGTTCTATCAATAATTGTTGCTTGTATTCGACTTCGTAGTTCACGAAGTCGAAACATTCTCAATATTTTGTCCGGTTTTCCACCACATCGTCATGAAGACTCAATCATGGAACAAGGACTTCGTCATCATACCGACACAAGTTTTGAAGGATACCCGAAACTTTTATACTCTCAGATTCAGAAGAATGGTTCTTCAACTTCAATTAGTTGCTCTATTTGCTTAGGAGACTATAAAGAAAGTGACATGTTGAGGTTACTTCCTGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTCATGTTACATTCCACTTGTCCCATATGTAGAAAATCATCACTAGCTTCAACCTAG

Protein sequence

>MS.gene21380.t1

MSNNNGTSEPPHNNNGFDANGFTYILILVFGLVFLVLSIIVACIRLRSSRSRNILNILSGFPPHRHEDSIMEQGLRHHTDTSFEGYPKLLYSQIQKNGSSTSISCSICLGDYKESDMLRLLPDCGHLYHVACVDPWLMLHSTCPICRKSSLAST