AlfalfaGEDB | MS.gene055597

M. sativa cultivar XinJiangDaYe / MS.gene055597

KEGG: K14686
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0015075 GO:0015318 GO:0016021 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0034220 GO:0035434 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055085 GO:0098655 GO:0098660 GO:0098662 GO:0110165
PFAM: PF04145.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055597.t1	XP_003606781.2	98.7	153	2	0	1	153	1	153	5.50E-79	303.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055597.t1	Q8GWP3	53.4	146	55	5	5	144	1	139	9.0e-30	131.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055597.t1	G7JDP2	98.7	153	2	0	1	153	1	153	3.9e-79	303.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene055595	MS.gene055597	0.97324	4.29E-136	-1.69E-46
MS.gene055597	MS.gene056899	0.800593	1.34E-48	-1.69E-46
MS.gene055597	MS.gene21380	0.800562	1.36E-48	-1.69E-46
MS.gene055597	MS.gene24583	0.810291	1.24E-50	-1.69E-46
MS.gene055597	MS.gene24585	0.81835	2.05E-52	-1.69E-46
MS.gene055597	MS.gene28548	0.808259	3.38E-50	-1.69E-46
MS.gene055597	MS.gene35459	0.808307	3.30E-50	-1.69E-46
MS.gene055597	MS.gene35460	0.819449	1.15E-52	-1.69E-46
MS.gene055597	MS.gene35690	0.809868	1.53E-50	-1.69E-46
MS.gene055597	MS.gene38338	0.810306	1.23E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055597.t1	MTR_4g065660	98.693	153	2	0	1	153	1	153	3.36e-110	310
MS.gene055597.t1	MTR_4g064963	81.667	120	21	1	35	153	46	165	1.23e-64	195
MS.gene055597.t1	MTR_4g065123	74.074	135	33	2	9	142	4	137	7.33e-58	177
MS.gene055597.t1	MTR_7g066070	46.154	143	69	4	8	147	2	139	1.61e-36	123
MS.gene055597.t1	MTR_4g019870	46.087	115	61	1	32	145	13	127	1.48e-33	115
MS.gene055597.t1	MTR_0027s0220	51.282	117	54	2	17	130	12	128	6.52e-32	111
MS.gene055597.t1	MTR_1g015000	38.583	127	57	5	31	136	1	127	1.15e-18	77.4
MS.gene055597.t1	MTR_3g105330	35.156	128	59	3	31	134	1	128	1.43e-15	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055597.t1	AT2G26975	53.061	147	56	5	5	145	1	140	6.48e-42	137
MS.gene055597.t1	AT5G59030	45.833	168	76	5	1	153	1	168	1.47e-36	124
MS.gene055597.t1	AT3G46900	49.587	121	57	3	36	152	34	154	4.16e-34	117
MS.gene055597.t1	AT5G59040	45.082	122	66	1	30	150	28	149	4.57e-31	109
MS.gene055597.t1	AT2G37925	43.860	114	60	2	30	139	28	141	3.57e-27	99.4
MS.gene055597.t1	AT5G20650	38.462	130	54	4	31	134	1	130	2.36e-16	71.6

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Find 43 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCATGGATCATGACA+TGG	0.668548	4.2:-40053527	None:intergenic
AAACTCGATGAGTATGGACA+TGG	0.667480	4.2:+40053324	None:intergenic
AATAAGCTAGGCCAACCCTA+AGG	0.634400	4.2:+40053227	None:intergenic
AATAATTAACAAGATAACGG+AGG	0.670863	4.2:+40053076	None:intergenic
AATTGGCCTGCTGGTAGTTC+TGG	0.393131	4.2:-40053379	MS.gene055597:CDS
ACCAATGACACTATGATGAT+GGG	0.572192	4.2:-40053466	MS.gene055597:CDS
ACCCATCATCATAGTGTCAT+TGG	0.428445	4.2:+40053465	None:intergenic
ACCCGGTTCAAACCCTGTTG+TGG	0.557595	4.2:-40053278	MS.gene055597:CDS
ACTCATGTCTTTCAATGGTG+GGG	0.593261	4.2:-40053191	MS.gene055597:CDS
AGCACCCGGTTCATTAAACC+CGG	0.579765	4.2:-40053295	MS.gene055597:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAATGACACTATGATGAT+GGG	-	chr4.2:40053135-40053154	MS.gene055597:CDS	35.0%
CCAACATAACCAAATAAGCT+AGG	+	chr4.2:40053389-40053408	None:intergenic	35.0%
CCTAGCTTATTTGGTTATGT+TGG	-	chr4.2:40053386-40053405	MS.gene055597:CDS	35.0%
TACCAATGACACTATGATGA+TGG	-	chr4.2:40053134-40053153	MS.gene055597:CDS	35.0%
TCGAAATTCTCATCTTGATG+TGG	+	chr4.2:40053501-40053520	None:intergenic	35.0%
AAACTCGATGAGTATGGACA+TGG	+	chr4.2:40053280-40053299	None:intergenic	40.0%
ACCCATCATCATAGTGTCAT+TGG	+	chr4.2:40053139-40053158	None:intergenic	40.0%
ACTCATGTCTTTCAATGGTG+GGG	-	chr4.2:40053410-40053429	MS.gene055597:CDS	40.0%
ATGCACATGACATTCTTCTG+GGG	-	chr4.2:40053174-40053193	MS.gene055597:CDS	40.0%
ATGGATCATGACATGGATCA+TGG	-	chr4.2:40053081-40053100	MS.gene055597:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	40053081	40053542	40053081	ID=MS.gene055597
chr4.2	mRNA	40053081	40053542	40053081	ID=MS.gene055597.t1;Parent=MS.gene055597
chr4.2	exon	40053081	40053542	40053081	ID=MS.gene055597.t1.exon1;Parent=MS.gene055597.t1
chr4.2	CDS	40053081	40053542	40053081	ID=cds.MS.gene055597.t1;Parent=MS.gene055597.t1

Gene Sequence

>MS.gene055597

ATGGATCATGACATGGATCATGGAATGGCAATGGCACCAAAGTCATCATCATCTACCAATGACACTATGATGATGGGTCAGATGCATGACATGATGCACATGACATTCTTCTGGGGTAAAGATGCATTGATTCTCTTTGACAATTGGCCTGCTGGTAGTTCTGGTAAGTATGTATTGGCTTTGATTCTTGTTTTCGCCATGTCCATACTCATCGAGTTTCTCTCAAGCACCCGGTTCATTAAACCCGGTTCAAACCCTGTTGTGGCCGGTCTAGTTCAGACACTTTTGCATGTCCTTAGGGTTGGCCTAGCTTATTTGGTTATGTTGGCACTCATGTCTTTCAATGGTGGGGTGTTCTTGGTTGCTGTGCTTGGTCATGCTGTTGGGTTCTTCTTTCGTAGCCGTGCTTTCAAAAAACCACATCAAGATGAGAATTTCGATCTTCCTCCGTTATCTTGTTAA

Protein sequence

>MS.gene055597.t1

MDHDMDHGMAMAPKSSSSTNDTMMMGQMHDMMHMTFFWGKDALILFDNWPAGSSGKYVLALILVFAMSILIEFLSSTRFIKPGSNPVVAGLVQTLLHVLRVGLAYLVMLALMSFNGGVFLVAVLGHAVGFFFRSRAFKKPHQDENFDLPPLSC