Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21560.t1 | AFK39974.1 | 89.6 | 462 | 43 | 3 | 1 | 460 | 1 | 459 | 5.90E-177 | 630.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21560.t1 | I3SI82 | 89.6 | 462 | 43 | 3 | 1 | 460 | 1 | 459 | 4.2e-177 | 630.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene21560 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene21560 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene21560 | 0.815773 | 7.79E-52 | -1.69E-46 |
| MS.gene052434 | MS.gene21560 | 0.811692 | 6.17E-51 | -1.69E-46 |
| MS.gene052932 | MS.gene21560 | 0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene21560 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene055314 | MS.gene21560 | 0.807311 | 5.38E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene21560 | 0.80108 | 1.07E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene21560 | 0.817993 | 2.47E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene21560 | 0.816668 | 4.91E-52 | -1.69E-46 |
| MS.gene056849 | MS.gene21560 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene056975 | MS.gene21560 | 0.801581 | 8.41E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene21560 | 0.838057 | 3.61E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene21560 | 0.814031 | 1.89E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene21560 | 0.802398 | 5.72E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene21560 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene21560 | 0.801875 | 7.33E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene21560 | 0.813082 | 3.06E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene21560 | 0.801684 | 8.02E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21560.t1 | MTR_1g089850 | 93.939 | 462 | 23 | 3 | 1 | 460 | 1 | 459 | 0.0 | 790 |
| MS.gene21560.t1 | MTR_2g021070 | 41.344 | 491 | 212 | 13 | 1 | 454 | 1 | 452 | 2.42e-83 | 264 |
| MS.gene21560.t1 | MTR_7g094240 | 58.848 | 243 | 87 | 5 | 1 | 234 | 1 | 239 | 3.01e-75 | 241 |
| MS.gene21560.t1 | MTR_7g094240 | 44.516 | 155 | 65 | 6 | 306 | 460 | 268 | 401 | 9.87e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21560.t1 | AT1G03350 | 45.208 | 480 | 206 | 16 | 1 | 448 | 1 | 455 | 3.40e-103 | 316 |
| MS.gene21560.t1 | AT4G13110 | 41.850 | 227 | 93 | 5 | 40 | 239 | 25 | 239 | 1.53e-46 | 164 |
Find 131 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGATGAGTGGAAATT+AGG | 0.182897 | 1.1:+65755118 | MS.gene21560:CDS |
| TGCTCAGGTTCGTGCAATTC+AGG | 0.219397 | 1.1:+65755054 | MS.gene21560:CDS |
| AGCGTCGCCGTCGCCGGAAT+TGG | 0.228839 | 1.1:-65754741 | None:intergenic |
| GGTATTATTATAAGGTTTAT+AGG | 0.230852 | 1.1:+65755260 | MS.gene21560:CDS |
| CTGGTCAGCATTGTTGGGTT+TGG | 0.234421 | 1.1:-65754714 | None:intergenic |
| TTGGGTTTGGGTTCGGATTC+GGG | 0.235445 | 1.1:-65754701 | None:intergenic |
| GATTCGGGTTGAGGTGGATC+TGG | 0.256193 | 1.1:-65754686 | None:intergenic |
| GCGACGGTAAGTTTCGATTA+TGG | 0.256322 | 1.1:-65754810 | None:intergenic |
| GTTGGGTTTGGGTTCGGATT+CGG | 0.256474 | 1.1:-65754702 | None:intergenic |
| GGAAATTGGTGGTGAAAATT+TGG | 0.280032 | 1.1:+65755441 | MS.gene21560:CDS |
| TGGTCAGCATTGTTGGGTTT+GGG | 0.286575 | 1.1:-65754713 | None:intergenic |
| TTCGATTATGGATTCGGATT+TGG | 0.290867 | 1.1:-65754798 | None:intergenic |
| TTGGGTTCGGATTCGGGTTG+AGG | 0.296541 | 1.1:-65754695 | None:intergenic |
| TGAAGAAAGCTGAAGATGTT+AGG | 0.325019 | 1.1:+65755284 | MS.gene21560:CDS |
| GATTTGAAAATCGGTGCTTC+TGG | 0.328076 | 1.1:+65755487 | MS.gene21560:CDS |
| CTTCAGCAAATCAACTTTGC+TGG | 0.335975 | 1.1:-65755935 | None:intergenic |
| GGGATCCTGGTCAGCATTGT+TGG | 0.360778 | 1.1:-65754720 | None:intergenic |
| GATGACTCATTCTTACTAGA+AGG | 0.362595 | 1.1:-65755790 | None:intergenic |
| AATTTGATGAGTGGAAATTA+GGG | 0.367833 | 1.1:+65755119 | MS.gene21560:CDS |
| GTTGATACTGATTTGAAAAT+CGG | 0.369188 | 1.1:+65755478 | MS.gene21560:CDS |
| TTGGTTTAGGTATTATTATA+AGG | 0.370567 | 1.1:+65755252 | MS.gene21560:CDS |
| AATGAGGAGGAAGAGGATCT+TGG | 0.374345 | 1.1:+65755838 | MS.gene21560:CDS |
| GCTGACCAGGATCCCAATTC+CGG | 0.374833 | 1.1:+65754728 | MS.gene21560:CDS |
| AGCATTGTTGGGTTTGGGTT+CGG | 0.374926 | 1.1:-65754708 | None:intergenic |
| CAAGATTCCGTCGGTGAGAT+TGG | 0.378504 | 1.1:+65754881 | MS.gene21560:CDS |
| TGCAGTGGCAGTGCTATTAT+CGG | 0.385125 | 1.1:-65754984 | None:intergenic |
| TGGATTCGAAGCGGTATAGT+AGG | 0.388900 | 1.1:+65755026 | MS.gene21560:CDS |
| GTAAGTTTCGATTATGGATT+CGG | 0.390284 | 1.1:-65754804 | None:intergenic |
| GCGTCGCCGTCGCCGGAATT+GGG | 0.394731 | 1.1:-65754740 | None:intergenic |
| AAAATCGGTGCTTCTGGCTC+TGG | 0.398679 | 1.1:+65755493 | MS.gene21560:CDS |
| GGATCCTGGTCAGCATTGTT+GGG | 0.399148 | 1.1:-65754719 | None:intergenic |
| CAATGGAGAGTGTTTACAAA+AGG | 0.410916 | 1.1:+65755197 | MS.gene21560:CDS |
| ATCTGGGTCGTCGGAGAAAA+CGG | 0.413965 | 1.1:-65754669 | None:intergenic |
| GTATAGTAGGTTTGATGCTC+AGG | 0.416255 | 1.1:+65755039 | MS.gene21560:CDS |
| GGCTTGTTAGAAGAATTTCC+AGG | 0.422643 | 1.1:+65755311 | MS.gene21560:CDS |
| TGGACGAGGGGCAGCATTCA+AGG | 0.431671 | 1.1:+65755542 | MS.gene21560:CDS |
| ATGAGGAGGAAGAGGATCTT+GGG | 0.436535 | 1.1:+65755839 | MS.gene21560:CDS |
| ACTGTGATCAACAAGGAAAT+TGG | 0.447593 | 1.1:+65755427 | MS.gene21560:CDS |
| CTGATGAGAAAGTGATAGAA+AGG | 0.448652 | 1.1:+65755749 | MS.gene21560:CDS |
| GACGGCGACGCTTGGAACTT+CGG | 0.450481 | 1.1:+65754752 | MS.gene21560:CDS |
| ATTCCGGCGACGGCGACGCT+TGG | 0.452269 | 1.1:+65754744 | MS.gene21560:CDS |
| GGCAGTGCTATTATCGGAAT+CGG | 0.457066 | 1.1:-65754978 | None:intergenic |
| CGTGCAATTCAGGGTGATGT+TGG | 0.465749 | 1.1:+65755064 | MS.gene21560:CDS |
| CGTCGCCGGAATTGGGATCC+TGG | 0.471242 | 1.1:-65754733 | None:intergenic |
| GGAAGAAGAGGATTTGAGTT+GGG | 0.472961 | 1.1:+65755333 | MS.gene21560:CDS |
| GTGCAATTCAGGGTGATGTT+GGG | 0.475509 | 1.1:+65755065 | MS.gene21560:CDS |
| GGAAGATGAAGACTTGAGTT+GGG | 0.479085 | 1.1:+65755975 | MS.gene21560:CDS |
| CAAATATATCAAGCCTTAGC+AGG | 0.479573 | 1.1:-65756021 | None:intergenic |
| AAGAATTTCCAGGGAAGAAG+AGG | 0.480736 | 1.1:+65755321 | MS.gene21560:CDS |
| ACTCAAATCCTCTTCTTCCC+TGG | 0.481399 | 1.1:-65755329 | None:intergenic |
| AGGAAGATGAAGACTTGAGT+TGG | 0.483278 | 1.1:+65755974 | MS.gene21560:CDS |
| ATTCGGGTTGAGGTGGATCT+GGG | 0.491019 | 1.1:-65754685 | None:intergenic |
| GGATGAGAAAAGTGATGAAA+TGG | 0.492754 | 1.1:+65755150 | MS.gene21560:CDS |
| ATCGAGATTAACGGCGAGGA+TGG | 0.499318 | 1.1:-65754954 | None:intergenic |
| GCGACGCTTGGAACTTCGGC+GGG | 0.500516 | 1.1:+65754756 | MS.gene21560:CDS |
| GAAGAAAGCTGAAGATGTTA+GGG | 0.501420 | 1.1:+65755285 | MS.gene21560:CDS |
| CATGGAAAATGAGGAGGAAG+AGG | 0.503340 | 1.1:+65755831 | MS.gene21560:CDS |
| TGGTGAAAATTTGGTGGAAA+AGG | 0.504543 | 1.1:+65755450 | MS.gene21560:CDS |
| GATGATATTGAGGATCTTAG+TGG | 0.507365 | 1.1:+65755865 | MS.gene21560:CDS |
| GTTCCAAGCGTCGCCGTCGC+CGG | 0.511161 | 1.1:-65754747 | None:intergenic |
| GGTTCGGATTCGGGTTGAGG+TGG | 0.511687 | 1.1:-65754692 | None:intergenic |
| TCAAATTCACTCAAATCCTC+AGG | 0.513224 | 1.1:-65755103 | None:intergenic |
| GGGGCAGCATTCAAGGGAGG+AGG | 0.515124 | 1.1:+65755549 | MS.gene21560:CDS |
| TAGTGGTATTGATGAAAAGA+AGG | 0.517712 | 1.1:+65755882 | MS.gene21560:CDS |
| TGAGAAAGTGATAGAAAGGA+AGG | 0.517849 | 1.1:+65755753 | MS.gene21560:CDS |
| AATGGAGAGTGTTTACAAAA+GGG | 0.520643 | 1.1:+65755198 | MS.gene21560:CDS |
| GAAGAATTCGAGTGTGGACG+AGG | 0.520689 | 1.1:+65755528 | MS.gene21560:CDS |
| TAAAGCATCAAAGTCGGTAG+TGG | 0.521296 | 1.1:+65755690 | MS.gene21560:CDS |
| CATCTTCCTCTGCAGTACTA+AGG | 0.523871 | 1.1:-65755960 | None:intergenic |
| CGATGATGATGTGGAGGAGG+AGG | 0.528116 | 1.1:+65755372 | MS.gene21560:CDS |
| CTTTCATGATCAACTACACT+CGG | 0.530643 | 1.1:-65755226 | None:intergenic |
| CAAACCCAACAATGCTGACC+AGG | 0.532753 | 1.1:+65754715 | MS.gene21560:CDS |
| GCTCAGGTTCGTGCAATTCA+GGG | 0.532993 | 1.1:+65755055 | MS.gene21560:CDS |
| GGAATCGGAATCGAGATTAA+CGG | 0.533636 | 1.1:-65754963 | None:intergenic |
| GTGGAAATTAGGGTTTGTGT+TGG | 0.536121 | 1.1:+65755129 | MS.gene21560:CDS |
| CAGGATCCCAATTCCGGCGA+CGG | 0.537455 | 1.1:+65754734 | MS.gene21560:CDS |
| AAATCGCGATTCGAAACGAT+TGG | 0.538955 | 1.1:+65755006 | MS.gene21560:CDS |
| GGGAAGAAGAGGATTTGAGT+TGG | 0.541417 | 1.1:+65755332 | MS.gene21560:CDS |
| GGACGAGGGGCAGCATTCAA+GGG | 0.544105 | 1.1:+65755543 | MS.gene21560:CDS |
| GACTTATACTGAGGTGCCTG+AGG | 0.545312 | 1.1:+65755087 | MS.gene21560:CDS |
| TTGAGGTGGATCTGGGTCGT+CGG | 0.546664 | 1.1:-65754678 | None:intergenic |
| AAAGTGATAGAAAGGAAGGA+TGG | 0.549445 | 1.1:+65755757 | MS.gene21560:CDS |
| GGCGACGCTTGGAACTTCGG+CGG | 0.549601 | 1.1:+65754755 | MS.gene21560:CDS |
| TCTTGGGTGGGATGATATTG+AGG | 0.555475 | 1.1:+65755855 | MS.gene21560:CDS |
| CAATGAACTAGGTGATGAGA+AGG | 0.555974 | 1.1:+65755609 | MS.gene21560:CDS |
| AAGCTGAAGATGTTAGGGCT+AGG | 0.556193 | 1.1:+65755290 | MS.gene21560:CDS |
| AAATTTGGTGGAAAAGGTAA+AGG | 0.557331 | 1.1:+65755456 | MS.gene21560:CDS |
| AAGTAAGCACATGGAAAATG+AGG | 0.558524 | 1.1:+65755822 | MS.gene21560:CDS |
| AGTGGATGATGCTGCGAACA+AGG | 0.559747 | 1.1:+65755708 | MS.gene21560:CDS |
| AATTGGTGGTGAAAATTTGG+TGG | 0.561912 | 1.1:+65755444 | MS.gene21560:CDS |
| TGATGACGATGAGCCTGCTA+AGG | 0.563128 | 1.1:+65756008 | MS.gene21560:CDS |
| ATTGGAACCACCGTCATCAA+AGG | 0.571640 | 1.1:+65754899 | MS.gene21560:CDS |
| GTGGAGGAGGAGGAGAATGA+AGG | 0.576008 | 1.1:+65755382 | MS.gene21560:CDS |
| TTTCGAATCGCGATTTGCAG+TGG | 0.578085 | 1.1:-65754999 | None:intergenic |
| GCGAACAAGGAAGTTTCTGC+GGG | 0.589975 | 1.1:+65755721 | MS.gene21560:CDS |
| ATCACGAGTTGTTGAAAACA+AGG | 0.591111 | 1.1:+65755648 | MS.gene21560:CDS |
| CTGAGCCGTTCCTTTGATGA+CGG | 0.594327 | 1.1:-65754909 | None:intergenic |
| GTTGAAAACAAGGATGATGA+TGG | 0.594683 | 1.1:+65755658 | MS.gene21560:CDS |
| GGATTCGGATTTGGATGCGA+GGG | 0.596133 | 1.1:-65754789 | None:intergenic |
| AGGAGGAAGAGGATCTTGGG+TGG | 0.596785 | 1.1:+65755842 | MS.gene21560:CDS |
| GTAGTGCAAAGCAATGAACT+AGG | 0.598622 | 1.1:+65755598 | MS.gene21560:CDS |
| AGCCGTTCCTTTGATGACGG+TGG | 0.599684 | 1.1:-65754906 | None:intergenic |
| CGACGATGATGATGTGGAGG+AGG | 0.602394 | 1.1:+65755369 | MS.gene21560:CDS |
| GGAGGAAGAGGATCTTGGGT+GGG | 0.605758 | 1.1:+65755843 | MS.gene21560:CDS |
| GCTTGTTAGAAGAATTTCCA+GGG | 0.609477 | 1.1:+65755312 | MS.gene21560:CDS |
| AAGAATTCGAGTGTGGACGA+GGG | 0.613755 | 1.1:+65755529 | MS.gene21560:CDS |
| TGCGAACAAGGAAGTTTCTG+CGG | 0.614524 | 1.1:+65755720 | MS.gene21560:CDS |
| CGAGGGGCAGCATTCAAGGG+AGG | 0.615245 | 1.1:+65755546 | MS.gene21560:CDS |
| ATTTGAGTGAATTTGATGAG+TGG | 0.617215 | 1.1:+65755110 | MS.gene21560:CDS |
| AGAATTCGAGTGTGGACGAG+GGG | 0.621851 | 1.1:+65755530 | MS.gene21560:CDS |
| AGTGGTTGAAAGTAAGCACA+TGG | 0.631264 | 1.1:+65755813 | MS.gene21560:CDS |
| AACCACCGTCATCAAAGGAA+CGG | 0.634037 | 1.1:+65754904 | MS.gene21560:CDS |
| ACGGCTCAGATCATATCTCA+AGG | 0.650094 | 1.1:+65754923 | MS.gene21560:CDS |
| GAAGCGCCTTAGTACTGCAG+AGG | 0.650693 | 1.1:+65755954 | MS.gene21560:CDS |
| GATCTACAAGAATTCAGCAC+CGG | 0.654688 | 1.1:+65754833 | MS.gene21560:CDS |
| GTGATCAACAAGGAAATTGG+TGG | 0.654851 | 1.1:+65755430 | MS.gene21560:CDS |
| TGTTGATAAAGCATCAAAGT+CGG | 0.655539 | 1.1:+65755684 | MS.gene21560:CDS |
| TAAGCACATGGAAAATGAGG+AGG | 0.656390 | 1.1:+65755825 | MS.gene21560:CDS |
| CGGAATCGAGATTAACGGCG+AGG | 0.668033 | 1.1:-65754958 | None:intergenic |
| TGATGAGAAGAATTCGAGTG+TGG | 0.669541 | 1.1:+65755522 | MS.gene21560:CDS |
| TAGTAAGAATGAGTCATCAG+TGG | 0.670980 | 1.1:+65755795 | MS.gene21560:CDS |
| TGGATTCGGATTTGGATGCG+AGG | 0.673737 | 1.1:-65754790 | None:intergenic |
| AGATGACGACGATGATGATG+TGG | 0.675069 | 1.1:+65755363 | MS.gene21560:CDS |
| GGTGGTTCCAATCTCACCGA+CGG | 0.676084 | 1.1:-65754888 | None:intergenic |
| ACAAGAGACTGTGATCAACA+AGG | 0.677268 | 1.1:+65755420 | MS.gene21560:CDS |
| TGAATTCTTGTAGATCGCGA+CGG | 0.681017 | 1.1:-65754826 | None:intergenic |
| GAAGTTGCTCAAGATTCCGT+CGG | 0.682572 | 1.1:+65754872 | MS.gene21560:CDS |
| TGACGACGATGATGATGTGG+AGG | 0.692618 | 1.1:+65755366 | MS.gene21560:CDS |
| GAAAACAAGGATGATGATGG+TGG | 0.694930 | 1.1:+65755661 | MS.gene21560:CDS |
| CGAAACGATTGGATTCGAAG+CGG | 0.722652 | 1.1:+65755017 | MS.gene21560:CDS |
| TGATGTTGGGACTTATACTG+AGG | 0.744272 | 1.1:+65755078 | MS.gene21560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTATTATTATAAGGTTTAT+AGG | + | chr1.1:65755260-65755279 | MS.gene21560:CDS | 20.0% |
| !! | TTGGTTTAGGTATTATTATA+AGG | + | chr1.1:65755252-65755271 | MS.gene21560:CDS | 20.0% |
| ! | AATTTGATGAGTGGAAATTA+GGG | + | chr1.1:65755119-65755138 | MS.gene21560:CDS | 25.0% |
| !! | TAGTTGATCATGAAAGTTTT+TGG | + | chr1.1:65755233-65755252 | MS.gene21560:CDS | 25.0% |
| !!! | ATCATGAAAGTTTTTGGTTT+AGG | + | chr1.1:65755239-65755258 | MS.gene21560:CDS | 25.0% |
| !!! | GTTGATACTGATTTGAAAAT+CGG | + | chr1.1:65755478-65755497 | MS.gene21560:CDS | 25.0% |
| ATTTGAGTGAATTTGATGAG+TGG | + | chr1.1:65755110-65755129 | MS.gene21560:CDS | 30.0% | |
| GAATTTGATGAGTGGAAATT+AGG | + | chr1.1:65755118-65755137 | MS.gene21560:CDS | 30.0% | |
| GTAAGTTTCGATTATGGATT+CGG | - | chr1.1:65754807-65754826 | None:intergenic | 30.0% | |
| ! | AAATTTGGTGGAAAAGGTAA+AGG | + | chr1.1:65755456-65755475 | MS.gene21560:CDS | 30.0% |
| ! | ATGAAATGGAGAAGCTTTTT+AGG | + | chr1.1:65755164-65755183 | MS.gene21560:CDS | 30.0% |
| ! | TGAAATGGAGAAGCTTTTTA+GGG | + | chr1.1:65755165-65755184 | MS.gene21560:CDS | 30.0% |
| ! | TGTTGATAAAGCATCAAAGT+CGG | + | chr1.1:65755684-65755703 | MS.gene21560:CDS | 30.0% |
| !! | AATGGAGAGTGTTTACAAAA+GGG | + | chr1.1:65755198-65755217 | MS.gene21560:CDS | 30.0% |
| !! | TAGTGGTATTGATGAAAAGA+AGG | + | chr1.1:65755882-65755901 | MS.gene21560:CDS | 30.0% |
| AAAGTGATAGAAAGGAAGGA+TGG | + | chr1.1:65755757-65755776 | MS.gene21560:CDS | 35.0% | |
| AAGTAAGCACATGGAAAATG+AGG | + | chr1.1:65755822-65755841 | MS.gene21560:CDS | 35.0% | |
| ACTGTGATCAACAAGGAAAT+TGG | + | chr1.1:65755427-65755446 | MS.gene21560:CDS | 35.0% | |
| ATCACGAGTTGTTGAAAACA+AGG | + | chr1.1:65755648-65755667 | MS.gene21560:CDS | 35.0% | |
| CTGATGAGAAAGTGATAGAA+AGG | + | chr1.1:65755749-65755768 | MS.gene21560:CDS | 35.0% | |
| CTTTCATGATCAACTACACT+CGG | - | chr1.1:65755229-65755248 | None:intergenic | 35.0% | |
| GAAGAAAGCTGAAGATGTTA+GGG | + | chr1.1:65755285-65755304 | MS.gene21560:CDS | 35.0% | |
| GATGACTCATTCTTACTAGA+AGG | - | chr1.1:65755793-65755812 | None:intergenic | 35.0% | |
| GATGATATTGAGGATCTTAG+TGG | + | chr1.1:65755865-65755884 | MS.gene21560:CDS | 35.0% | |
| GGATGAGAAAAGTGATGAAA+TGG | + | chr1.1:65755150-65755169 | MS.gene21560:CDS | 35.0% | |
| GTTGAAAACAAGGATGATGA+TGG | + | chr1.1:65755658-65755677 | MS.gene21560:CDS | 35.0% | |
| TAGTAAGAATGAGTCATCAG+TGG | + | chr1.1:65755795-65755814 | MS.gene21560:CDS | 35.0% | |
| TCAAATTCACTCAAATCCTC+AGG | - | chr1.1:65755106-65755125 | None:intergenic | 35.0% | |
| TGAAGAAAGCTGAAGATGTT+AGG | + | chr1.1:65755284-65755303 | MS.gene21560:CDS | 35.0% | |
| TGAGAAAGTGATAGAAAGGA+AGG | + | chr1.1:65755753-65755772 | MS.gene21560:CDS | 35.0% | |
| TTCGATTATGGATTCGGATT+TGG | - | chr1.1:65754801-65754820 | None:intergenic | 35.0% | |
| ! | GCTTGTTAGAAGAATTTCCA+GGG | + | chr1.1:65755312-65755331 | MS.gene21560:CDS | 35.0% |
| ! | TGGTGAAAATTTGGTGGAAA+AGG | + | chr1.1:65755450-65755469 | MS.gene21560:CDS | 35.0% |
| !! | AATTGGTGGTGAAAATTTGG+TGG | + | chr1.1:65755444-65755463 | MS.gene21560:CDS | 35.0% |
| !! | CAATGGAGAGTGTTTACAAA+AGG | + | chr1.1:65755197-65755216 | MS.gene21560:CDS | 35.0% |
| !! | GGAAATTGGTGGTGAAAATT+TGG | + | chr1.1:65755441-65755460 | MS.gene21560:CDS | 35.0% |
| !!! | TTCGATCTCGTTTTTTAAGC+CGG | - | chr1.1:65754855-65754874 | None:intergenic | 35.0% |
| AAATCGCGATTCGAAACGAT+TGG | + | chr1.1:65755006-65755025 | MS.gene21560:CDS | 40.0% | |
| AAGAATTTCCAGGGAAGAAG+AGG | + | chr1.1:65755321-65755340 | MS.gene21560:CDS | 40.0% | |
| ACAAGAGACTGTGATCAACA+AGG | + | chr1.1:65755420-65755439 | MS.gene21560:CDS | 40.0% | |
| AGGAAGATGAAGACTTGAGT+TGG | + | chr1.1:65755974-65755993 | MS.gene21560:CDS | 40.0% | |
| AGTGGTTGAAAGTAAGCACA+TGG | + | chr1.1:65755813-65755832 | MS.gene21560:CDS | 40.0% | |
| CAATGAACTAGGTGATGAGA+AGG | + | chr1.1:65755609-65755628 | MS.gene21560:CDS | 40.0% | |
| CTTCAGCAAATCAACTTTGC+TGG | - | chr1.1:65755938-65755957 | None:intergenic | 40.0% | |
| GATCTACAAGAATTCAGCAC+CGG | + | chr1.1:65754833-65754852 | MS.gene21560:CDS | 40.0% | |
| GGAAGATGAAGACTTGAGTT+GGG | + | chr1.1:65755975-65755994 | MS.gene21560:CDS | 40.0% | |
| GGAATCGGAATCGAGATTAA+CGG | - | chr1.1:65754966-65754985 | None:intergenic | 40.0% | |
| GTAGTGCAAAGCAATGAACT+AGG | + | chr1.1:65755598-65755617 | MS.gene21560:CDS | 40.0% | |
| GTATAGTAGGTTTGATGCTC+AGG | + | chr1.1:65755039-65755058 | MS.gene21560:CDS | 40.0% | |
| GTGATCAACAAGGAAATTGG+TGG | + | chr1.1:65755430-65755449 | MS.gene21560:CDS | 40.0% | |
| GTGGAAATTAGGGTTTGTGT+TGG | + | chr1.1:65755129-65755148 | MS.gene21560:CDS | 40.0% | |
| TAAGCACATGGAAAATGAGG+AGG | + | chr1.1:65755825-65755844 | MS.gene21560:CDS | 40.0% | |
| TGAATTCTTGTAGATCGCGA+CGG | - | chr1.1:65754829-65754848 | None:intergenic | 40.0% | |
| TGATGAGAAGAATTCGAGTG+TGG | + | chr1.1:65755522-65755541 | MS.gene21560:CDS | 40.0% | |
| TGATGTTGGGACTTATACTG+AGG | + | chr1.1:65755078-65755097 | MS.gene21560:CDS | 40.0% | |
| ! | GATTTGAAAATCGGTGCTTC+TGG | + | chr1.1:65755487-65755506 | MS.gene21560:CDS | 40.0% |
| ! | GGAAGAAGAGGATTTGAGTT+GGG | + | chr1.1:65755333-65755352 | MS.gene21560:CDS | 40.0% |
| ! | TAAAGCATCAAAGTCGGTAG+TGG | + | chr1.1:65755690-65755709 | MS.gene21560:CDS | 40.0% |
| !! | GAAAACAAGGATGATGATGG+TGG | + | chr1.1:65755661-65755680 | MS.gene21560:CDS | 40.0% |
| !! | GGCTTGTTAGAAGAATTTCC+AGG | + | chr1.1:65755311-65755330 | MS.gene21560:CDS | 40.0% |
| !! | TTTTAGGGAGAACGATGCAA+TGG | + | chr1.1:65755180-65755199 | MS.gene21560:CDS | 40.0% |
| AACCACCGTCATCAAAGGAA+CGG | + | chr1.1:65754904-65754923 | MS.gene21560:CDS | 45.0% | |
| AAGAATTCGAGTGTGGACGA+GGG | + | chr1.1:65755529-65755548 | MS.gene21560:CDS | 45.0% | |
| AAGCTGAAGATGTTAGGGCT+AGG | + | chr1.1:65755290-65755309 | MS.gene21560:CDS | 45.0% | |
| AATGAGGAGGAAGAGGATCT+TGG | + | chr1.1:65755838-65755857 | MS.gene21560:CDS | 45.0% | |
| ACGGCTCAGATCATATCTCA+AGG | + | chr1.1:65754923-65754942 | MS.gene21560:CDS | 45.0% | |
| ACTCAAATCCTCTTCTTCCC+TGG | - | chr1.1:65755332-65755351 | None:intergenic | 45.0% | |
| ATGAGGAGGAAGAGGATCTT+GGG | + | chr1.1:65755839-65755858 | MS.gene21560:CDS | 45.0% | |
| ATTGGAACCACCGTCATCAA+AGG | + | chr1.1:65754899-65754918 | MS.gene21560:CDS | 45.0% | |
| CATCTTCCTCTGCAGTACTA+AGG | - | chr1.1:65755963-65755982 | None:intergenic | 45.0% | |
| CATGGAAAATGAGGAGGAAG+AGG | + | chr1.1:65755831-65755850 | MS.gene21560:CDS | 45.0% | |
| CGAAACGATTGGATTCGAAG+CGG | + | chr1.1:65755017-65755036 | MS.gene21560:CDS | 45.0% | |
| GAAGTTGCTCAAGATTCCGT+CGG | + | chr1.1:65754872-65754891 | MS.gene21560:CDS | 45.0% | |
| GCGACGGTAAGTTTCGATTA+TGG | - | chr1.1:65754813-65754832 | None:intergenic | 45.0% | |
| GGGAAGAAGAGGATTTGAGT+TGG | + | chr1.1:65755332-65755351 | MS.gene21560:CDS | 45.0% | |
| GTGCAATTCAGGGTGATGTT+GGG | + | chr1.1:65755065-65755084 | MS.gene21560:CDS | 45.0% | |
| TCTTGGGTGGGATGATATTG+AGG | + | chr1.1:65755855-65755874 | MS.gene21560:CDS | 45.0% | |
| TGCGAACAAGGAAGTTTCTG+CGG | + | chr1.1:65755720-65755739 | MS.gene21560:CDS | 45.0% | |
| TGGATTCGAAGCGGTATAGT+AGG | + | chr1.1:65755026-65755045 | MS.gene21560:CDS | 45.0% | |
| TGGTCAGCATTGTTGGGTTT+GGG | - | chr1.1:65754716-65754735 | None:intergenic | 45.0% | |
| TTTCGAATCGCGATTTGCAG+TGG | - | chr1.1:65755002-65755021 | None:intergenic | 45.0% | |
| ! | AGATGACGACGATGATGATG+TGG | + | chr1.1:65755363-65755382 | MS.gene21560:CDS | 45.0% |
| ! | AGCATTGTTGGGTTTGGGTT+CGG | - | chr1.1:65754711-65754730 | None:intergenic | 45.0% |
| ! | GGCAGTGCTATTATCGGAAT+CGG | - | chr1.1:65754981-65755000 | None:intergenic | 45.0% |
| ! | TGCAGTGGCAGTGCTATTAT+CGG | - | chr1.1:65754987-65755006 | None:intergenic | 45.0% |
| AGAATTCGAGTGTGGACGAG+GGG | + | chr1.1:65755530-65755549 | MS.gene21560:CDS | 50.0% | |
| AGTGGATGATGCTGCGAACA+AGG | + | chr1.1:65755708-65755727 | MS.gene21560:CDS | 50.0% | |
| ATCGAGATTAACGGCGAGGA+TGG | - | chr1.1:65754957-65754976 | None:intergenic | 50.0% | |
| ATCTGGGTCGTCGGAGAAAA+CGG | - | chr1.1:65754672-65754691 | None:intergenic | 50.0% | |
| CAAACCCAACAATGCTGACC+AGG | + | chr1.1:65754715-65754734 | MS.gene21560:CDS | 50.0% | |
| CAAGATTCCGTCGGTGAGAT+TGG | + | chr1.1:65754881-65754900 | MS.gene21560:CDS | 50.0% | |
| CGTGCAATTCAGGGTGATGT+TGG | + | chr1.1:65755064-65755083 | MS.gene21560:CDS | 50.0% | |
| CTGAGCCGTTCCTTTGATGA+CGG | - | chr1.1:65754912-65754931 | None:intergenic | 50.0% | |
| CTGGTCAGCATTGTTGGGTT+TGG | - | chr1.1:65754717-65754736 | None:intergenic | 50.0% | |
| GAAGAATTCGAGTGTGGACG+AGG | + | chr1.1:65755528-65755547 | MS.gene21560:CDS | 50.0% | |
| GCGAACAAGGAAGTTTCTGC+GGG | + | chr1.1:65755721-65755740 | MS.gene21560:CDS | 50.0% | |
| GCTCAGGTTCGTGCAATTCA+GGG | + | chr1.1:65755055-65755074 | MS.gene21560:CDS | 50.0% | |
| GGATCCTGGTCAGCATTGTT+GGG | - | chr1.1:65754722-65754741 | None:intergenic | 50.0% | |
| GGATTCGGATTTGGATGCGA+GGG | - | chr1.1:65754792-65754811 | None:intergenic | 50.0% | |
| TGCTCAGGTTCGTGCAATTC+AGG | + | chr1.1:65755054-65755073 | MS.gene21560:CDS | 50.0% | |
| TGGATTCGGATTTGGATGCG+AGG | - | chr1.1:65754793-65754812 | None:intergenic | 50.0% | |
| ! | GACTTATACTGAGGTGCCTG+AGG | + | chr1.1:65755087-65755106 | MS.gene21560:CDS | 50.0% |
| ! | GTTGGGTTTGGGTTCGGATT+CGG | - | chr1.1:65754705-65754724 | None:intergenic | 50.0% |
| ! | TGACGACGATGATGATGTGG+AGG | + | chr1.1:65755366-65755385 | MS.gene21560:CDS | 50.0% |
| ! | TGATGACGATGAGCCTGCTA+AGG | + | chr1.1:65756008-65756027 | MS.gene21560:CDS | 50.0% |
| ! | TTGGGTTTGGGTTCGGATTC+GGG | - | chr1.1:65754704-65754723 | None:intergenic | 50.0% |
| !! | AAAATCGGTGCTTCTGGCTC+TGG | + | chr1.1:65755493-65755512 | MS.gene21560:CDS | 50.0% |
| !! | ATTCGGGTTGAGGTGGATCT+GGG | - | chr1.1:65754688-65754707 | None:intergenic | 50.0% |
| AGGAGGAAGAGGATCTTGGG+TGG | + | chr1.1:65755842-65755861 | MS.gene21560:CDS | 55.0% | |
| CGGAATCGAGATTAACGGCG+AGG | - | chr1.1:65754961-65754980 | None:intergenic | 55.0% | |
| GCTGACCAGGATCCCAATTC+CGG | + | chr1.1:65754728-65754747 | MS.gene21560:CDS | 55.0% | |
| GGAGGAAGAGGATCTTGGGT+GGG | + | chr1.1:65755843-65755862 | MS.gene21560:CDS | 55.0% | |
| GGGATCCTGGTCAGCATTGT+TGG | - | chr1.1:65754723-65754742 | None:intergenic | 55.0% | |
| GGTGGTTCCAATCTCACCGA+CGG | - | chr1.1:65754891-65754910 | None:intergenic | 55.0% | |
| GTGGAGGAGGAGGAGAATGA+AGG | + | chr1.1:65755382-65755401 | MS.gene21560:CDS | 55.0% | |
| TTGAGGTGGATCTGGGTCGT+CGG | - | chr1.1:65754681-65754700 | None:intergenic | 55.0% | |
| ! | CGACGATGATGATGTGGAGG+AGG | + | chr1.1:65755369-65755388 | MS.gene21560:CDS | 55.0% |
| ! | CGATGATGATGTGGAGGAGG+AGG | + | chr1.1:65755372-65755391 | MS.gene21560:CDS | 55.0% |
| ! | GAAGCGCCTTAGTACTGCAG+AGG | + | chr1.1:65755954-65755973 | MS.gene21560:CDS | 55.0% |
| !! | AGCCGTTCCTTTGATGACGG+TGG | - | chr1.1:65754909-65754928 | None:intergenic | 55.0% |
| !! | GATTCGGGTTGAGGTGGATC+TGG | - | chr1.1:65754689-65754708 | None:intergenic | 55.0% |
| !! | TTGGGTTCGGATTCGGGTTG+AGG | - | chr1.1:65754698-65754717 | None:intergenic | 55.0% |
| CAGGATCCCAATTCCGGCGA+CGG | + | chr1.1:65754734-65754753 | MS.gene21560:CDS | 60.0% | |
| GACGGCGACGCTTGGAACTT+CGG | + | chr1.1:65754752-65754771 | MS.gene21560:CDS | 60.0% | |
| GGACGAGGGGCAGCATTCAA+GGG | + | chr1.1:65755543-65755562 | MS.gene21560:CDS | 60.0% | |
| TGGACGAGGGGCAGCATTCA+AGG | + | chr1.1:65755542-65755561 | MS.gene21560:CDS | 60.0% | |
| !! | GGTTCGGATTCGGGTTGAGG+TGG | - | chr1.1:65754695-65754714 | None:intergenic | 60.0% |
| CGAGGGGCAGCATTCAAGGG+AGG | + | chr1.1:65755546-65755565 | MS.gene21560:CDS | 65.0% | |
| CGTCGCCGGAATTGGGATCC+TGG | - | chr1.1:65754736-65754755 | None:intergenic | 65.0% | |
| GCGACGCTTGGAACTTCGGC+GGG | + | chr1.1:65754756-65754775 | MS.gene21560:CDS | 65.0% | |
| GGCGACGCTTGGAACTTCGG+CGG | + | chr1.1:65754755-65754774 | MS.gene21560:CDS | 65.0% | |
| GGGGCAGCATTCAAGGGAGG+AGG | + | chr1.1:65755549-65755568 | MS.gene21560:CDS | 65.0% | |
| AGCGTCGCCGTCGCCGGAAT+TGG | - | chr1.1:65754744-65754763 | None:intergenic | 70.0% | |
| ATTCCGGCGACGGCGACGCT+TGG | + | chr1.1:65754744-65754763 | MS.gene21560:CDS | 70.0% | |
| GCGTCGCCGTCGCCGGAATT+GGG | - | chr1.1:65754743-65754762 | None:intergenic | 70.0% | |
| ! | GTTCCAAGCGTCGCCGTCGC+CGG | - | chr1.1:65754750-65754769 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 65754653 | 65756035 | 65754653 | ID=MS.gene21560 |
| chr1.1 | mRNA | 65754653 | 65756035 | 65754653 | ID=MS.gene21560.t1;Parent=MS.gene21560 |
| chr1.1 | exon | 65754653 | 65756035 | 65754653 | ID=MS.gene21560.t1.exon1;Parent=MS.gene21560.t1 |
| chr1.1 | CDS | 65754653 | 65756035 | 65754653 | ID=cds.MS.gene21560.t1;Parent=MS.gene21560.t1 |
| Gene Sequence |
| Protein sequence |
