Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21752.t1 | XP_003592044.1 | 98.7 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 1.10E-219 | 772.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21752.t1 | P30075 | 98.5 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 7.4e-222 | 770.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21752.t1 | G7IAK9 | 98.7 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 7.6e-220 | 772.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene21752 | 0.809561 | 1.78E-50 | -1.69E-46 |
| MS.gene050883 | MS.gene21752 | 0.830564 | 2.74E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene21752 | 0.803812 | 2.92E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene21752 | 0.834541 | 2.82E-56 | -1.69E-46 |
| MS.gene056311 | MS.gene21752 | 0.812769 | 3.59E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene21752 | 0.815625 | 8.40E-52 | -1.69E-46 |
| MS.gene058109 | MS.gene21752 | 0.804784 | 1.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21752.t1 | MTR_1g098140 | 98.715 | 389 | 5 | 0 | 1 | 389 | 1 | 389 | 0.0 | 797 |
| MS.gene21752.t1 | MTR_1g097935 | 98.458 | 389 | 6 | 0 | 1 | 389 | 1 | 389 | 0.0 | 794 |
| MS.gene21752.t1 | MTR_1g097910 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 794 |
| MS.gene21752.t1 | MTR_7g016820 | 98.201 | 389 | 7 | 0 | 1 | 389 | 1 | 389 | 0.0 | 793 |
| MS.gene21752.t1 | MTR_5g007730 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 792 |
| MS.gene21752.t1 | MTR_5g007760 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 792 |
| MS.gene21752.t1 | MTR_7g016720 | 97.943 | 389 | 8 | 0 | 1 | 389 | 1 | 389 | 0.0 | 790 |
| MS.gene21752.t1 | MTR_7g016780 | 97.686 | 389 | 9 | 0 | 1 | 389 | 1 | 389 | 0.0 | 789 |
| MS.gene21752.t1 | MTR_7g016800 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene21752.t1 | MTR_7g016700 | 97.172 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene21752.t1 | MTR_5g007717 | 97.172 | 389 | 11 | 0 | 1 | 389 | 1 | 389 | 0.0 | 788 |
| MS.gene21752.t1 | MTR_5g007713 | 96.915 | 389 | 12 | 0 | 1 | 389 | 1 | 389 | 0.0 | 786 |
| MS.gene21752.t1 | MTR_3g083920 | 90.464 | 388 | 37 | 0 | 1 | 388 | 1 | 388 | 0.0 | 748 |
| MS.gene21752.t1 | MTR_3g083910 | 89.691 | 388 | 40 | 0 | 1 | 388 | 1 | 388 | 0.0 | 745 |
| MS.gene21752.t1 | MTR_2g058470 | 87.404 | 389 | 49 | 0 | 1 | 389 | 1 | 389 | 0.0 | 719 |
| MS.gene21752.t1 | MTR_3g086260 | 81.443 | 388 | 72 | 0 | 1 | 388 | 1 | 388 | 0.0 | 677 |
| MS.gene21752.t1 | MTR_7g084300 | 79.949 | 389 | 78 | 0 | 1 | 389 | 1 | 389 | 0.0 | 671 |
| MS.gene21752.t1 | MTR_7g113405 | 96.040 | 303 | 12 | 0 | 87 | 389 | 1 | 303 | 0.0 | 599 |
| MS.gene21752.t1 | MTR_3g088675 | 65.553 | 389 | 134 | 0 | 1 | 389 | 1 | 389 | 0.0 | 573 |
| MS.gene21752.t1 | MTR_5g007740 | 80.061 | 326 | 65 | 0 | 64 | 389 | 1 | 326 | 0.0 | 548 |
| MS.gene21752.t1 | MTR_5g007723 | 68.939 | 396 | 76 | 5 | 12 | 389 | 32 | 398 | 0.0 | 532 |
| MS.gene21752.t1 | MTR_5g007770 | 78.000 | 300 | 33 | 2 | 70 | 369 | 1 | 267 | 1.37e-167 | 469 |
| MS.gene21752.t1 | MTR_3g088670 | 49.231 | 390 | 184 | 6 | 10 | 388 | 2 | 388 | 2.57e-131 | 382 |
| MS.gene21752.t1 | MTR_4g075560 | 42.632 | 380 | 211 | 4 | 11 | 387 | 13 | 388 | 4.01e-103 | 310 |
| MS.gene21752.t1 | MTR_4g078730 | 37.802 | 373 | 225 | 2 | 15 | 387 | 24 | 389 | 7.44e-94 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21752.t1 | AT5G13930 | 81.959 | 388 | 69 | 1 | 3 | 389 | 8 | 395 | 0.0 | 671 |
| MS.gene21752.t1 | AT4G34850 | 40.849 | 377 | 219 | 3 | 15 | 389 | 18 | 392 | 1.63e-97 | 296 |
| MS.gene21752.t1 | AT4G00040 | 40.051 | 392 | 223 | 6 | 1 | 387 | 1 | 385 | 2.17e-97 | 295 |
| MS.gene21752.t1 | AT1G02050 | 39.332 | 389 | 225 | 6 | 2 | 387 | 12 | 392 | 2.81e-88 | 272 |
| MS.gene21752.t1 | AT4G34850 | 40.312 | 320 | 188 | 2 | 72 | 389 | 1 | 319 | 4.55e-82 | 254 |
| MS.gene21752.t1 | AT3G52160 | 25.926 | 243 | 160 | 8 | 150 | 387 | 97 | 324 | 1.15e-11 | 65.9 |
| MS.gene21752.t1 | AT3G52160 | 25.926 | 243 | 160 | 8 | 150 | 387 | 210 | 437 | 2.63e-11 | 65.5 |
Find 94 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATAGGTTTCTCAATTTC+TGG | 0.119306 | 5.2:-2036201 | None:intergenic |
| CTTGAATGGGGTGTGTTATT+TGG | 0.196353 | 5.2:+2036606 | MS.gene21752:CDS |
| AGAAGGCCCTGCAACCATTT+TGG | 0.256780 | 5.2:+2035227 | MS.gene21752:CDS |
| TACCAACAAGGTTGCTTTGC+AGG | 0.283953 | 5.2:+2035991 | MS.gene21752:CDS |
| AGAGAAGTGCTTAGTGAATA+TGG | 0.292804 | 5.2:+2036495 | MS.gene21752:CDS |
| AACCTATATTTGAAATGGTT+TGG | 0.294710 | 5.2:+2036214 | MS.gene21752:CDS |
| CTGACTACAACTCAATCTTT+TGG | 0.301608 | 5.2:+2036391 | MS.gene21752:CDS |
| CTTTCAAAATCTCCTCTGTT+AGG | 0.305425 | 5.2:-2035726 | None:intergenic |
| CTTGTTGGACAAGCTCTATT+TGG | 0.306385 | 5.2:+2036138 | MS.gene21752:CDS |
| TCAATGGCTCCTTCGCTATC+AGG | 0.316229 | 5.2:-2036255 | None:intergenic |
| TGCAGTGCCAATAGCCAAAA+TGG | 0.318392 | 5.2:-2035241 | None:intergenic |
| TGGGGTGTGTTATTTGGATT+TGG | 0.322116 | 5.2:+2036612 | MS.gene21752:CDS |
| GTCCAAACCATTTCAAATAT+AGG | 0.326145 | 5.2:-2036216 | None:intergenic |
| TGAATACATGGCACCTTCAT+TGG | 0.347646 | 5.2:+2035765 | MS.gene21752:CDS |
| CCAATAGCCAAAATGGTTGC+AGG | 0.352617 | 5.2:-2035234 | None:intergenic |
| GGTTTCTCAATTTCTGGTAC+TGG | 0.354846 | 5.2:-2036195 | None:intergenic |
| TCTACTTGATCTAAAATTGC+AGG | 0.357559 | 5.2:-2036432 | None:intergenic |
| TGAGAAACCTATATTTGAAA+TGG | 0.372889 | 5.2:+2036209 | MS.gene21752:CDS |
| TACCAACTCACCAAACTCTT+AGG | 0.375304 | 5.2:+2035937 | MS.gene21752:CDS |
| AAGTGAGTAATCTTTGACTT+TGG | 0.378080 | 5.2:-2035871 | None:intergenic |
| CACCTTCTTAAAGATGTTCC+TGG | 0.385004 | 5.2:+2036309 | MS.gene21752:CDS |
| GTTGATGCTTTCCAACCATT+AGG | 0.391919 | 5.2:+2036363 | MS.gene21752:CDS |
| GACCTAAGAGTTTGGTGAGT+TGG | 0.406231 | 5.2:-2035939 | None:intergenic |
| ACTCACTTGGACAGCCTTGT+TGG | 0.426712 | 5.2:+2036123 | MS.gene21752:CDS |
| GCTTCGTTTAGCTAAAGATT+TGG | 0.429276 | 5.2:+2036023 | MS.gene21752:CDS |
| AGTGAAAGCTATAAAAGAAT+GGG | 0.430526 | 5.2:+2035843 | MS.gene21752:CDS |
| TACCGGAGAAGGACTTGAAT+GGG | 0.446292 | 5.2:+2036593 | MS.gene21752:CDS |
| GTGGTAGAGGTACCTAGATT+AGG | 0.447455 | 5.2:+2035808 | MS.gene21752:CDS |
| TGGGCGAAGACCTAAGAGTT+TGG | 0.450749 | 5.2:-2035947 | None:intergenic |
| TCTAAAATTGCAGGTCCACC+AGG | 0.454079 | 5.2:-2036423 | None:intergenic |
| TTCACGAAGGTGACCGTCAA+TGG | 0.457763 | 5.2:-2036271 | None:intergenic |
| CAACAAAGGTGCACGTGTCT+TGG | 0.462409 | 5.2:+2036053 | MS.gene21752:CDS |
| CTTTGTTCAACACAATTGGC+TGG | 0.464913 | 5.2:-2035267 | None:intergenic |
| CCCTAGTGTTTGTGAATACA+TGG | 0.465121 | 5.2:+2035753 | MS.gene21752:CDS |
| CTGAAATTCGCAAGGCTCAA+AGG | 0.467872 | 5.2:+2035202 | MS.gene21752:CDS |
| GACGGTCACCTTCGTGAAGC+TGG | 0.468151 | 5.2:+2036276 | MS.gene21752:CDS |
| GCAAGACATGGTGGTGGTAG+AGG | 0.474656 | 5.2:+2035795 | MS.gene21752:CDS |
| TGAAATTCGCAAGGCTCAAA+GGG | 0.479464 | 5.2:+2035203 | MS.gene21752:CDS |
| GTGATAAATCTATGATTAAG+AGG | 0.481713 | 5.2:+2035692 | MS.gene21752:CDS |
| CAGTGAAAGCTATAAAAGAA+TGG | 0.482912 | 5.2:+2035842 | MS.gene21752:CDS |
| CTGTCCAAGTGAGTATCACT+AGG | 0.483602 | 5.2:-2036114 | None:intergenic |
| ACCTTCTTAAAGATGTTCCT+GGG | 0.484500 | 5.2:+2036310 | MS.gene21752:CDS |
| CTCCTGCAAAGCAACCTTGT+TGG | 0.484637 | 5.2:-2035993 | None:intergenic |
| AAAGAACATCAATAAAGCAT+TGG | 0.485622 | 5.2:+2036341 | MS.gene21752:CDS |
| ACGCAAAACAACAGTTTCAA+TGG | 0.489155 | 5.2:-2036646 | None:intergenic |
| GGAGCTGCTGCACTAATTGT+TGG | 0.489269 | 5.2:+2036165 | MS.gene21752:CDS |
| TTGTAGTCAGAAATTCCTAA+TGG | 0.492058 | 5.2:-2036378 | None:intergenic |
| TGTGCTTTGTTCAACACAAT+TGG | 0.494990 | 5.2:-2035271 | None:intergenic |
| GCAGCCTCCTTTCCTAATCT+AGG | 0.495772 | 5.2:-2035820 | None:intergenic |
| GTCTTCGCCCATATGTGAAA+AGG | 0.504788 | 5.2:+2035959 | MS.gene21752:CDS |
| GTCACTGCAGTCACATTTCG+CGG | 0.505061 | 5.2:+2036090 | MS.gene21752:CDS |
| TGGCACCTTCATTGGATGCT+AGG | 0.506096 | 5.2:+2035773 | MS.gene21752:CDS |
| TGTGTTATTTGGATTTGGAC+CGG | 0.507689 | 5.2:+2036617 | MS.gene21752:CDS |
| GTGAGTTGGTAATCAGCGCC+AGG | 0.507967 | 5.2:-2035925 | None:intergenic |
| AGTCAGAAATTCCTAATGGT+TGG | 0.509856 | 5.2:-2036374 | None:intergenic |
| ATGTTCTTTGAAACAATCCC+AGG | 0.510933 | 5.2:-2036327 | None:intergenic |
| CGGCCCTAGTGATACTCACT+TGG | 0.529910 | 5.2:+2036110 | MS.gene21752:CDS |
| CAAGATGGATTGAAGACTAC+CGG | 0.530114 | 5.2:+2036576 | MS.gene21752:CDS |
| ACAAGTGGCGTAGACATGCC+TGG | 0.531795 | 5.2:+2035907 | MS.gene21752:CDS |
| CTACCGGAGAAGGACTTGAA+TGG | 0.539554 | 5.2:+2036592 | MS.gene21752:CDS |
| ACCCCATTCAAGTCCTTCTC+CGG | 0.545846 | 5.2:-2036595 | None:intergenic |
| AGGTTGCTTTGCAGGAGGTA+CGG | 0.545853 | 5.2:+2035999 | MS.gene21752:CDS |
| TCCCAGGAACATCTTTAAGA+AGG | 0.550142 | 5.2:-2036311 | None:intergenic |
| AGAGGTACCTAGATTAGGAA+AGG | 0.550891 | 5.2:+2035813 | MS.gene21752:CDS |
| GGACAAGCTCTATTTGGAGA+TGG | 0.551435 | 5.2:+2036144 | MS.gene21752:CDS |
| AGAAAGAAATCAGCTCAAGA+TGG | 0.551606 | 5.2:+2036561 | MS.gene21752:CDS |
| TTCACTAAGCACTTCTCTAG+TGG | 0.556047 | 5.2:-2036490 | None:intergenic |
| CGCAAGGCTCAAAGGGCAGA+AGG | 0.557567 | 5.2:+2035210 | MS.gene21752:CDS |
| CAAATAGAGCTTGTCCAACA+AGG | 0.560320 | 5.2:-2036137 | None:intergenic |
| GTGTTATTTGGATTTGGACC+GGG | 0.568673 | 5.2:+2036618 | MS.gene21752:CDS |
| AGGCATGTCTACGCCACTTG+TGG | 0.573081 | 5.2:-2035905 | None:intergenic |
| GATAGCGAAGGAGCCATTGA+CGG | 0.576182 | 5.2:+2036258 | MS.gene21752:CDS |
| TCTTGCCTAGCATCCAATGA+AGG | 0.579296 | 5.2:-2035778 | None:intergenic |
| TTAATCGTTTGCACCACAAG+TGG | 0.585549 | 5.2:+2035892 | MS.gene21752:CDS |
| ACAGTTTCAATGGTAAGTCC+CGG | 0.595399 | 5.2:-2036636 | None:intergenic |
| GGATTGAAGACTACCGGAGA+AGG | 0.606102 | 5.2:+2036582 | MS.gene21752:CDS |
| GGTACCTAGATTAGGAAAGG+AGG | 0.606542 | 5.2:+2035816 | MS.gene21752:CDS |
| GCCATGTATTCACAAACACT+AGG | 0.607131 | 5.2:-2035754 | None:intergenic |
| CAATAGCCAAAATGGTTGCA+GGG | 0.607881 | 5.2:-2035233 | None:intergenic |
| GAGATATATGTACCTAACAG+AGG | 0.637031 | 5.2:+2035714 | MS.gene21752:CDS |
| CCATGTATTCACAAACACTA+GGG | 0.645365 | 5.2:-2035753 | None:intergenic |
| ATTGGATGCTAGGCAAGACA+TGG | 0.648366 | 5.2:+2035783 | MS.gene21752:CDS |
| ACAATCGCTCCTGATAGCGA+AGG | 0.653640 | 5.2:+2036246 | MS.gene21752:CDS |
| CAACAAGGTTGCTTTGCAGG+AGG | 0.655290 | 5.2:+2035994 | MS.gene21752:CDS |
| GTGAAAGCTATAAAAGAATG+GGG | 0.667253 | 5.2:+2035844 | MS.gene21752:CDS |
| CTAAAATTGCAGGTCCACCA+GGG | 0.667988 | 5.2:-2036422 | None:intergenic |
| GAGTGTGTCTGAAATTCGCA+AGG | 0.672509 | 5.2:+2035194 | MS.gene21752:CDS |
| TGTCCAAGTGAGTATCACTA+GGG | 0.674277 | 5.2:-2036113 | None:intergenic |
| TGCTAGGCAAGACATGGTGG+TGG | 0.675229 | 5.2:+2035789 | MS.gene21752:CDS |
| GATTTGGCTGAAAACAACAA+AGG | 0.694413 | 5.2:+2036039 | MS.gene21752:CDS |
| ATGTTAGTCCAGCTTCACGA+AGG | 0.698828 | 5.2:-2036284 | None:intergenic |
| AGGTATATGATGTACCAACA+AGG | 0.704257 | 5.2:+2035979 | MS.gene21752:CDS |
| ACCGGAGAAGGACTTGAATG+GGG | 0.708623 | 5.2:+2036594 | MS.gene21752:CDS |
| GGATGCTAGGCAAGACATGG+TGG | 0.737305 | 5.2:+2035786 | MS.gene21752:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATTAGTTCAAAATATTT+GGG | - | chr5.2:2035650-2035669 | None:intergenic | 15.0% |
| !! | TGATATTAGTTCAAAATATT+TGG | - | chr5.2:2035651-2035670 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTGAATATACA+TGG | + | chr5.2:2035408-2035427 | MS.gene21752:intron | 15.0% |
| !! | TATATAAACTGATATGCAAT+AGG | - | chr5.2:2035470-2035489 | None:intergenic | 20.0% |
| !!! | ATAATTTTTATCCATTTGAC+AGG | - | chr5.2:2035585-2035604 | None:intergenic | 20.0% |
| !!! | TAGGTTTTTTTTATAATAGC+TGG | - | chr5.2:2035512-2035531 | None:intergenic | 20.0% |
| ! | AAAGAACATCAATAAAGCAT+TGG | + | chr5.2:2036341-2036360 | MS.gene21752:CDS | 25.0% |
| ! | AATATAGGTTTCTCAATTTC+TGG | - | chr5.2:2036204-2036223 | None:intergenic | 25.0% |
| ! | AGTGAAAGCTATAAAAGAAT+GGG | + | chr5.2:2035843-2035862 | MS.gene21752:CDS | 25.0% |
| ! | ATCTCTTCATAATTATCTTC+AGG | + | chr5.2:2035670-2035689 | MS.gene21752:intron | 25.0% |
| ! | GTGATAAATCTATGATTAAG+AGG | + | chr5.2:2035692-2035711 | MS.gene21752:CDS | 25.0% |
| ! | TGAGAAACCTATATTTGAAA+TGG | + | chr5.2:2036209-2036228 | MS.gene21752:CDS | 25.0% |
| !! | AACCTATATTTGAAATGGTT+TGG | + | chr5.2:2036214-2036233 | MS.gene21752:CDS | 25.0% |
| !! | ATCATATACCTTTTCACATA+TGG | - | chr5.2:2035970-2035989 | None:intergenic | 25.0% |
| !! | TCATATACCTTTTCACATAT+GGG | - | chr5.2:2035969-2035988 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATAATAGCTGGC+TGG | - | chr5.2:2035508-2035527 | None:intergenic | 25.0% |
| CAATGATATTTGCATCGTAT+AGG | - | chr5.2:2035531-2035550 | None:intergenic | 30.0% | |
| CAGTGAAAGCTATAAAAGAA+TGG | + | chr5.2:2035842-2035861 | MS.gene21752:CDS | 30.0% | |
| GTCCAAACCATTTCAAATAT+AGG | - | chr5.2:2036219-2036238 | None:intergenic | 30.0% | |
| GTGAAAGCTATAAAAGAATG+GGG | + | chr5.2:2035844-2035863 | MS.gene21752:CDS | 30.0% | |
| TATTAAACTTGCCTGTCAAA+TGG | + | chr5.2:2035571-2035590 | MS.gene21752:intron | 30.0% | |
| TTGTAGTCAGAAATTCCTAA+TGG | - | chr5.2:2036381-2036400 | None:intergenic | 30.0% | |
| ! | AAGTGAGTAATCTTTGACTT+TGG | - | chr5.2:2035874-2035893 | None:intergenic | 30.0% |
| ! | TCTACTTGATCTAAAATTGC+AGG | - | chr5.2:2036435-2036454 | None:intergenic | 30.0% |
| !! | TTTCATCTTTTCAGGCTTTA+AGG | - | chr5.2:2036469-2036488 | None:intergenic | 30.0% |
| !!! | GTGATTTTGAAGTAGAAATC+AGG | - | chr5.2:2035300-2035319 | None:intergenic | 30.0% |
| ACCTTCTTAAAGATGTTCCT+GGG | + | chr5.2:2036310-2036329 | MS.gene21752:CDS | 35.0% | |
| ACGCAAAACAACAGTTTCAA+TGG | - | chr5.2:2036649-2036668 | None:intergenic | 35.0% | |
| AGAAAGAAATCAGCTCAAGA+TGG | + | chr5.2:2036561-2036580 | MS.gene21752:CDS | 35.0% | |
| AGGTATATGATGTACCAACA+AGG | + | chr5.2:2035979-2035998 | MS.gene21752:CDS | 35.0% | |
| AGTCAGAAATTCCTAATGGT+TGG | - | chr5.2:2036377-2036396 | None:intergenic | 35.0% | |
| CCATGTATTCACAAACACTA+GGG | - | chr5.2:2035756-2035775 | None:intergenic | 35.0% | |
| CTTTCAAAATCTCCTCTGTT+AGG | - | chr5.2:2035729-2035748 | None:intergenic | 35.0% | |
| GAGATATATGTACCTAACAG+AGG | + | chr5.2:2035714-2035733 | MS.gene21752:CDS | 35.0% | |
| GATTTGGCTGAAAACAACAA+AGG | + | chr5.2:2036039-2036058 | MS.gene21752:CDS | 35.0% | |
| GCTTCGTTTAGCTAAAGATT+TGG | + | chr5.2:2036023-2036042 | MS.gene21752:CDS | 35.0% | |
| ! | AATAGCTGGCTGGTATTTTA+AGG | - | chr5.2:2035498-2035517 | None:intergenic | 35.0% |
| ! | CTGACTACAACTCAATCTTT+TGG | + | chr5.2:2036391-2036410 | MS.gene21752:CDS | 35.0% |
| ! | TGTGCTTTGTTCAACACAAT+TGG | - | chr5.2:2035274-2035293 | None:intergenic | 35.0% |
| !! | AGAGAAGTGCTTAGTGAATA+TGG | + | chr5.2:2036495-2036514 | MS.gene21752:CDS | 35.0% |
| !! | ATGTTCTTTGAAACAATCCC+AGG | - | chr5.2:2036330-2036349 | None:intergenic | 35.0% |
| !! | TGTGTTATTTGGATTTGGAC+CGG | + | chr5.2:2036617-2036636 | MS.gene21752:CDS | 35.0% |
| ACAGTTTCAATGGTAAGTCC+CGG | - | chr5.2:2036639-2036658 | None:intergenic | 40.0% | |
| CAAATAGAGCTTGTCCAACA+AGG | - | chr5.2:2036140-2036159 | None:intergenic | 40.0% | |
| CAATAGCCAAAATGGTTGCA+GGG | - | chr5.2:2035236-2035255 | None:intergenic | 40.0% | |
| CACCTTCTTAAAGATGTTCC+TGG | + | chr5.2:2036309-2036328 | MS.gene21752:CDS | 40.0% | |
| CCCTAGTGTTTGTGAATACA+TGG | + | chr5.2:2035753-2035772 | MS.gene21752:CDS | 40.0% | |
| CTTGTTGGACAAGCTCTATT+TGG | + | chr5.2:2036138-2036157 | MS.gene21752:CDS | 40.0% | |
| CTTTGTTCAACACAATTGGC+TGG | - | chr5.2:2035270-2035289 | None:intergenic | 40.0% | |
| GCCATGTATTCACAAACACT+AGG | - | chr5.2:2035757-2035776 | None:intergenic | 40.0% | |
| GTTGATGCTTTCCAACCATT+AGG | + | chr5.2:2036363-2036382 | MS.gene21752:CDS | 40.0% | |
| TACCAACTCACCAAACTCTT+AGG | + | chr5.2:2035937-2035956 | MS.gene21752:CDS | 40.0% | |
| TGAAATTCGCAAGGCTCAAA+GGG | + | chr5.2:2035203-2035222 | MS.gene21752:CDS | 40.0% | |
| TGAATACATGGCACCTTCAT+TGG | + | chr5.2:2035765-2035784 | MS.gene21752:CDS | 40.0% | |
| TGTCCAAGTGAGTATCACTA+GGG | - | chr5.2:2036116-2036135 | None:intergenic | 40.0% | |
| TTAATCGTTTGCACCACAAG+TGG | + | chr5.2:2035892-2035911 | MS.gene21752:CDS | 40.0% | |
| TTCACTAAGCACTTCTCTAG+TGG | - | chr5.2:2036493-2036512 | None:intergenic | 40.0% | |
| TTGGGTGATACGAAGTCAAT+GGG | - | chr5.2:2035632-2035651 | None:intergenic | 40.0% | |
| TTTGGGTGATACGAAGTCAA+TGG | - | chr5.2:2035633-2035652 | None:intergenic | 40.0% | |
| ! | CTAGTGGCTTTCATCTTTTC+AGG | - | chr5.2:2036477-2036496 | None:intergenic | 40.0% |
| ! | CTTGAATGGGGTGTGTTATT+TGG | + | chr5.2:2036606-2036625 | MS.gene21752:CDS | 40.0% |
| ! | TCCCAGGAACATCTTTAAGA+AGG | - | chr5.2:2036314-2036333 | None:intergenic | 40.0% |
| !! | AGAGGTACCTAGATTAGGAA+AGG | + | chr5.2:2035813-2035832 | MS.gene21752:CDS | 40.0% |
| !! | CAAGATGGATTGAAGACTAC+CGG | + | chr5.2:2036576-2036595 | MS.gene21752:CDS | 40.0% |
| !! | GGTTTCTCAATTTCTGGTAC+TGG | - | chr5.2:2036198-2036217 | None:intergenic | 40.0% |
| !! | GTGTTATTTGGATTTGGACC+GGG | + | chr5.2:2036618-2036637 | MS.gene21752:CDS | 40.0% |
| !! | TGGGGTGTGTTATTTGGATT+TGG | + | chr5.2:2036612-2036631 | MS.gene21752:CDS | 40.0% |
| ATGTTAGTCCAGCTTCACGA+AGG | - | chr5.2:2036287-2036306 | None:intergenic | 45.0% | |
| ATTGGATGCTAGGCAAGACA+TGG | + | chr5.2:2035783-2035802 | MS.gene21752:CDS | 45.0% | |
| CCAATAGCCAAAATGGTTGC+AGG | - | chr5.2:2035237-2035256 | None:intergenic | 45.0% | |
| CTAAAATTGCAGGTCCACCA+GGG | - | chr5.2:2036425-2036444 | None:intergenic | 45.0% | |
| CTGAAATTCGCAAGGCTCAA+AGG | + | chr5.2:2035202-2035221 | MS.gene21752:CDS | 45.0% | |
| CTGTCCAAGTGAGTATCACT+AGG | - | chr5.2:2036117-2036136 | None:intergenic | 45.0% | |
| GGACAAGCTCTATTTGGAGA+TGG | + | chr5.2:2036144-2036163 | MS.gene21752:CDS | 45.0% | |
| GGTACCTAGATTAGGAAAGG+AGG | + | chr5.2:2035816-2035835 | MS.gene21752:CDS | 45.0% | |
| GTCTTCGCCCATATGTGAAA+AGG | + | chr5.2:2035959-2035978 | MS.gene21752:CDS | 45.0% | |
| TACCGGAGAAGGACTTGAAT+GGG | + | chr5.2:2036593-2036612 | MS.gene21752:CDS | 45.0% | |
| TCTTGCCTAGCATCCAATGA+AGG | - | chr5.2:2035781-2035800 | None:intergenic | 45.0% | |
| TGCAGTGCCAATAGCCAAAA+TGG | - | chr5.2:2035244-2035263 | None:intergenic | 45.0% | |
| ! | ATCTTTTGGATTGCACACCC+TGG | + | chr5.2:2036405-2036424 | MS.gene21752:CDS | 45.0% |
| ! | GACCTAAGAGTTTGGTGAGT+TGG | - | chr5.2:2035942-2035961 | None:intergenic | 45.0% |
| ! | GAGTGTGTCTGAAATTCGCA+AGG | + | chr5.2:2035194-2035213 | MS.gene21752:CDS | 45.0% |
| ! | TACCAACAAGGTTGCTTTGC+AGG | + | chr5.2:2035991-2036010 | MS.gene21752:CDS | 45.0% |
| ! | TCTAAAATTGCAGGTCCACC+AGG | - | chr5.2:2036426-2036445 | None:intergenic | 45.0% |
| ! | TGGGCATCTAAAATGTCTCG+CGG | - | chr5.2:2035613-2035632 | None:intergenic | 45.0% |
| !! | GTGGTAGAGGTACCTAGATT+AGG | + | chr5.2:2035808-2035827 | MS.gene21752:CDS | 45.0% |
| !!! | CCTGCAACCATTTTGGCTAT+TGG | + | chr5.2:2035234-2035253 | MS.gene21752:CDS | 45.0% |
| ACCCCATTCAAGTCCTTCTC+CGG | - | chr5.2:2036598-2036617 | None:intergenic | 50.0% | |
| ACCGGAGAAGGACTTGAATG+GGG | + | chr5.2:2036594-2036613 | MS.gene21752:CDS | 50.0% | |
| CTACCGGAGAAGGACTTGAA+TGG | + | chr5.2:2036592-2036611 | MS.gene21752:CDS | 50.0% | |
| CTCCTGCAAAGCAACCTTGT+TGG | - | chr5.2:2035996-2036015 | None:intergenic | 50.0% | |
| GATAGCGAAGGAGCCATTGA+CGG | + | chr5.2:2036258-2036277 | MS.gene21752:CDS | 50.0% | |
| GCAGCCTCCTTTCCTAATCT+AGG | - | chr5.2:2035823-2035842 | None:intergenic | 50.0% | |
| GGAGCTGCTGCACTAATTGT+TGG | + | chr5.2:2036165-2036184 | MS.gene21752:CDS | 50.0% | |
| GGATTGAAGACTACCGGAGA+AGG | + | chr5.2:2036582-2036601 | MS.gene21752:CDS | 50.0% | |
| GTCACTGCAGTCACATTTCG+CGG | + | chr5.2:2036090-2036109 | MS.gene21752:CDS | 50.0% | |
| TCAATGGCTCCTTCGCTATC+AGG | - | chr5.2:2036258-2036277 | None:intergenic | 50.0% | |
| TGGCACCTTCATTGGATGCT+AGG | + | chr5.2:2035773-2035792 | MS.gene21752:CDS | 50.0% | |
| TGGGCGAAGACCTAAGAGTT+TGG | - | chr5.2:2035950-2035969 | None:intergenic | 50.0% | |
| TTCACGAAGGTGACCGTCAA+TGG | - | chr5.2:2036274-2036293 | None:intergenic | 50.0% | |
| ! | ACAATCGCTCCTGATAGCGA+AGG | + | chr5.2:2036246-2036265 | MS.gene21752:CDS | 50.0% |
| ! | ACTCACTTGGACAGCCTTGT+TGG | + | chr5.2:2036123-2036142 | MS.gene21752:CDS | 50.0% |
| ! | AGAAGGCCCTGCAACCATTT+TGG | + | chr5.2:2035227-2035246 | MS.gene21752:CDS | 50.0% |
| ! | AGGTTGCTTTGCAGGAGGTA+CGG | + | chr5.2:2035999-2036018 | MS.gene21752:CDS | 50.0% |
| ! | CAACAAAGGTGCACGTGTCT+TGG | + | chr5.2:2036053-2036072 | MS.gene21752:CDS | 50.0% |
| ! | CAACAAGGTTGCTTTGCAGG+AGG | + | chr5.2:2035994-2036013 | MS.gene21752:CDS | 50.0% |
| ! | TTTTGGATTGCACACCCTGG+TGG | + | chr5.2:2036408-2036427 | MS.gene21752:CDS | 50.0% |
| ACAAGTGGCGTAGACATGCC+TGG | + | chr5.2:2035907-2035926 | MS.gene21752:CDS | 55.0% | |
| AGGCATGTCTACGCCACTTG+TGG | - | chr5.2:2035908-2035927 | None:intergenic | 55.0% | |
| CGGCCCTAGTGATACTCACT+TGG | + | chr5.2:2036110-2036129 | MS.gene21752:CDS | 55.0% | |
| GGATGCTAGGCAAGACATGG+TGG | + | chr5.2:2035786-2035805 | MS.gene21752:CDS | 55.0% | |
| TGCTAGGCAAGACATGGTGG+TGG | + | chr5.2:2035789-2035808 | MS.gene21752:CDS | 55.0% | |
| !! | GCAAGACATGGTGGTGGTAG+AGG | + | chr5.2:2035795-2035814 | MS.gene21752:CDS | 55.0% |
| !! | GTGAGTTGGTAATCAGCGCC+AGG | - | chr5.2:2035928-2035947 | None:intergenic | 55.0% |
| CGCAAGGCTCAAAGGGCAGA+AGG | + | chr5.2:2035210-2035229 | MS.gene21752:CDS | 60.0% | |
| GACGGTCACCTTCGTGAAGC+TGG | + | chr5.2:2036276-2036295 | MS.gene21752:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2035189 | 2036683 | 2035189 | ID=MS.gene21752 |
| chr5.2 | mRNA | 2035189 | 2036683 | 2035189 | ID=MS.gene21752.t1;Parent=MS.gene21752 |
| chr5.2 | exon | 2035189 | 2035366 | 2035189 | ID=MS.gene21752.t1.exon1;Parent=MS.gene21752.t1 |
| chr5.2 | CDS | 2035189 | 2035366 | 2035189 | ID=cds.MS.gene21752.t1;Parent=MS.gene21752.t1 |
| chr5.2 | exon | 2035692 | 2036683 | 2035692 | ID=MS.gene21752.t1.exon2;Parent=MS.gene21752.t1 |
| chr5.2 | CDS | 2035692 | 2036683 | 2035692 | ID=cds.MS.gene21752.t1;Parent=MS.gene21752.t1 |
| Gene Sequence |
| Protein sequence |
