AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058109


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058109.t1 MTR_5g007713 98.972 389 4 0 1 389 1 389 0.0 802
MS.gene058109.t1 MTR_5g007717 98.201 389 7 0 1 389 1 389 0.0 799
MS.gene058109.t1 MTR_1g098140 96.915 389 12 0 1 389 1 389 0.0 786
MS.gene058109.t1 MTR_1g097935 96.658 389 13 0 1 389 1 389 0.0 783
MS.gene058109.t1 MTR_5g007730 96.144 389 15 0 1 389 1 389 0.0 783
MS.gene058109.t1 MTR_1g097910 96.401 389 14 0 1 389 1 389 0.0 782
MS.gene058109.t1 MTR_7g016700 96.401 389 14 0 1 389 1 389 0.0 781
MS.gene058109.t1 MTR_7g016800 96.144 389 15 0 1 389 1 389 0.0 781
MS.gene058109.t1 MTR_7g016720 96.401 389 14 0 1 389 1 389 0.0 780
MS.gene058109.t1 MTR_7g016820 96.144 389 15 0 1 389 1 389 0.0 780
MS.gene058109.t1 MTR_5g007760 96.144 389 15 0 1 389 1 389 0.0 779
MS.gene058109.t1 MTR_7g016780 95.887 389 16 0 1 389 1 389 0.0 777
MS.gene058109.t1 MTR_3g083920 91.237 388 34 0 1 388 1 388 0.0 754
MS.gene058109.t1 MTR_3g083910 89.948 388 39 0 1 388 1 388 0.0 748
MS.gene058109.t1 MTR_2g058470 87.404 389 49 0 1 389 1 389 0.0 719
MS.gene058109.t1 MTR_3g086260 82.732 388 67 0 1 388 1 388 0.0 691
MS.gene058109.t1 MTR_7g084300 80.879 387 74 0 1 387 1 387 0.0 677
MS.gene058109.t1 MTR_7g113405 95.050 303 15 0 87 389 1 303 0.0 595
MS.gene058109.t1 MTR_3g088675 66.324 389 131 0 1 389 1 389 0.0 582
MS.gene058109.t1 MTR_5g007740 80.368 326 64 0 64 389 1 326 0.0 553
MS.gene058109.t1 MTR_5g007723 69.018 397 74 5 12 389 32 398 0.0 537
MS.gene058109.t1 MTR_5g007770 78.333 300 32 2 70 369 1 267 1.59e-169 474
MS.gene058109.t1 MTR_3g088670 48.462 390 187 6 10 388 2 388 2.41e-129 377
MS.gene058109.t1 MTR_4g075560 41.579 380 215 4 11 387 13 388 1.11e-101 306
MS.gene058109.t1 MTR_4g078730 36.461 373 230 2 15 387 24 389 3.01e-91 280
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058109.t1 AT5G13930 82.732 388 66 1 3 389 8 395 0.0 677
MS.gene058109.t1 AT4G34850 40.000 375 221 3 15 387 18 390 2.67e-96 293
MS.gene058109.t1 AT4G00040 38.776 392 228 6 1 387 1 385 8.63e-95 289
MS.gene058109.t1 AT1G02050 37.629 388 233 5 2 387 12 392 7.13e-86 266
MS.gene058109.t1 AT4G34850 39.623 318 189 2 72 387 1 317 3.87e-81 251
MS.gene058109.t1 AT3G52160 27.426 237 156 9 150 383 97 320 1.05e-11 65.9
MS.gene058109.t1 AT3G52160 27.426 237 156 9 150 383 210 433 2.05e-11 65.9

Find 105 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATAGGTTTCTCAATTTC+TGG 0.117134 5.4:-3033408 None:intergenic
CTTGTTGGACAAGCACTCTT+TGG 0.251490 5.4:+3033345 MS.gene058109:CDS
CTGATTATAATTCAATCTTC+TGG 0.262797 5.4:+3033598 MS.gene058109:CDS
GTTTCTCAATTTCTGGTATT+GGG 0.265654 5.4:-3033401 None:intergenic
GGTTTCTCAATTTCTGGTAT+TGG 0.273222 5.4:-3033402 None:intergenic
AAGTGTGTAATCTTTGATTT+TGG 0.277272 5.4:-3033078 None:intergenic
CCTTCGTTTGGCCAAGGACT+TGG 0.290850 5.4:+3033230 MS.gene058109:CDS
AACCTATATTTGAGATGGTT+TGG 0.308691 5.4:+3033421 MS.gene058109:CDS
GCGAAAGAAATCGGCTCAAC+AGG 0.312226 5.4:+3033767 MS.gene058109:CDS
CCACAGGAGAAGGGCTTGAT+TGG 0.325246 5.4:+3033799 MS.gene058109:CDS
AGAGAAGTACTTAGTGAATA+TGG 0.329263 5.4:+3033702 MS.gene058109:CDS
GATCAAGTTGAACAAAAGTT+AGG 0.336805 5.4:+3033651 MS.gene058109:CDS
TACCAACAAGGGTGCTTTGC+AGG 0.340912 5.4:+3033198 MS.gene058109:CDS
TGGGGTGTGTTGTTCGGCTT+TGG 0.357346 5.4:+3033819 MS.gene058109:CDS
TACCAACTCACGAAACTCTT+AGG 0.375304 5.4:+3033144 MS.gene058109:CDS
CACCTTCTTAAAGATGTTCC+TGG 0.385004 5.4:+3033516 MS.gene058109:CDS
CTTGATTGGGGTGTGTTGTT+CGG 0.385641 5.4:+3033813 MS.gene058109:CDS
GTGTTGTTCGGCTTTGGACC+TGG 0.386498 5.4:+3033825 MS.gene058109:CDS
CCAATGGCCATGATGGTTGC+AGG 0.395368 5.4:-3032559 None:intergenic
CACAGGAGAAGGGCTTGATT+GGG 0.398609 5.4:+3033800 MS.gene058109:CDS
ATCATATACCTCTTCACATA+TGG 0.401250 5.4:-3033174 None:intergenic
CATGTATCTTCTCTTGATCA+TGG 0.401917 5.4:-3032908 None:intergenic
GAGTTTCGTGAGTTGGTAAT+CGG 0.407916 5.4:-3033139 None:intergenic
AGGTGGGACGGTCCTTCGTT+TGG 0.411263 5.4:+3033218 MS.gene058109:CDS
GGAGCTGCTGCACTCATTGT+TGG 0.411529 5.4:+3033372 MS.gene058109:CDS
GACCTAAGAGTTTCGTGAGT+TGG 0.417759 5.4:-3033146 None:intergenic
ACTCATTTGGACAGTCTTGT+TGG 0.418448 5.4:+3033330 MS.gene058109:CDS
TCAATGGCTCCCTCACTGTC+TGG 0.423950 5.4:-3033462 None:intergenic
TCAAGAATTGCGGGTCCACC+TGG 0.431851 5.4:-3033630 None:intergenic
GACAGTGAGGGAGCCATTGA+TGG 0.433253 5.4:+3033465 MS.gene058109:CDS
TTATAATCAGAGATGTTTAG+TGG 0.436355 5.4:-3033585 None:intergenic
GTCCAAACCATCTCAAATAT+AGG 0.437103 5.4:-3033423 None:intergenic
GACTTGGCTGAGAACAATAA+AGG 0.438047 5.4:+3033246 MS.gene058109:CDS
CATCTCATAGAGCCACACTA+TGG 0.446315 5.4:-3033872 None:intergenic
AGATGAGATGCGAAAGAAAT+CGG 0.448207 5.4:+3033758 MS.gene058109:CDS
CAGTGAAGGCCATAAAAGAA+TGG 0.456620 5.4:+3033049 MS.gene058109:CDS
CACCTGCAAAGCACCCTTGT+TGG 0.458609 5.4:-3033200 None:intergenic
ATTGTTCTCAGCCAAGTCCT+TGG 0.461734 5.4:-3033241 None:intergenic
CTTTGTTCAACACAATTGGC+TGG 0.464913 5.4:-3032592 None:intergenic
TCAACTTGATCAAGAATTGC+GGG 0.468071 5.4:-3033639 None:intergenic
AATCAGAGATGTTTAGTGGT+TGG 0.473129 5.4:-3033581 None:intergenic
GCAGGACATGGTGGTGGTAG+AGG 0.474656 5.4:+3033002 MS.gene058109:CDS
AGTGAAGGCCATAAAAGAAT+GGG 0.475863 5.4:+3033050 MS.gene058109:CDS
ACCTTCTTAAAGATGTTCCT+GGG 0.484500 5.4:+3033517 MS.gene058109:CDS
ATGGAGAACAACAGTTTCAA+TGG 0.487848 5.4:-3033853 None:intergenic
TGGTCCTAGTGATACTCATT+TGG 0.493191 5.4:+3033317 MS.gene058109:CDS
TGTGCTTTGTTCAACACAAT+TGG 0.494990 5.4:-3032596 None:intergenic
GATGGTCATCTCCGTGAAGC+TGG 0.495570 5.4:+3033483 MS.gene058109:CDS
ACCTTCATTAGATGCTAGGC+AGG 0.501213 5.4:+3032984 MS.gene058109:CDS
GGACTTAAAACCACAGGAGA+AGG 0.504968 5.4:+3033789 MS.gene058109:CDS
TGAGAAACCTATATTTGAGA+TGG 0.507221 5.4:+3033416 MS.gene058109:CDS
TGCAGTGCCAATGGCCATGA+TGG 0.507335 5.4:-3032566 None:intergenic
CCTGCAACCATCATGGCCAT+TGG 0.508648 5.4:+3032559 MS.gene058109:CDS
GTGAGTTGGTAATCGGCGCC+AGG 0.515174 5.4:-3033132 None:intergenic
GACGGTCCTTCGTTTGGCCA+AGG 0.515696 5.4:+3033224 MS.gene058109:CDS
CCAATCAAGCCCTTCTCCTG+TGG 0.520229 5.4:-3033799 None:intergenic
CATTGATAAAGCATTGGTTG+AGG 0.521385 5.4:+3033554 MS.gene058109:CDS
TCCAAGTGTATGTGAATACA+TGG 0.525305 5.4:+3032960 MS.gene058109:CDS
GGACAAGCACTCTTTGGAGA+TGG 0.536691 5.4:+3033351 MS.gene058109:CDS
AGGAAAGGAGGCTGCAGTGA+AGG 0.539707 5.4:+3033035 MS.gene058109:CDS
TTCACGGAGATGACCATCAA+TGG 0.540133 5.4:-3033478 None:intergenic
GCCATGTATTCACATACACT+TGG 0.545736 5.4:-3032961 None:intergenic
AGAAGGCCCTGCAACCATCA+TGG 0.546762 5.4:+3032552 MS.gene058109:CDS
ATCTTCTGGATTGCTCACCC+AGG 0.549136 5.4:+3033612 MS.gene058109:CDS
TCCCAGGAACATCTTTAAGA+AGG 0.550142 5.4:-3033518 None:intergenic
TGGCACCTTCATTAGATGCT+AGG 0.550797 5.4:+3032980 MS.gene058109:CDS
CGCAAGGCTCAAAGAGCAGA+AGG 0.558731 5.4:+3032535 MS.gene058109:CDS
CTGTCCAAATGAGTATCACT+AGG 0.561644 5.4:-3033321 None:intergenic
GCAGCCTCCTTTCCTAGTCT+AGG 0.564443 5.4:-3033027 None:intergenic
GGCTGGATTTGCAGTGCCAA+TGG 0.564489 5.4:-3032575 None:intergenic
TCCTGCCTAGCATCTAATGA+AGG 0.564734 5.4:-3032985 None:intergenic
TTCAACTTGATCAAGAATTG+CGG 0.567995 5.4:-3033640 None:intergenic
AGAGGTACCTAGACTAGGAA+AGG 0.571613 5.4:+3033020 MS.gene058109:CDS
TTCACTAAGTACTTCTCTAG+TGG 0.572078 5.4:-3033697 None:intergenic
AACTGTTGTTCTCCATAGTG+TGG 0.577442 5.4:+3033860 MS.gene058109:CDS
CAATGGCCATGATGGTTGCA+GGG 0.578454 5.4:-3032558 None:intergenic
ATTAGATGCTAGGCAGGACA+TGG 0.583481 5.4:+3032990 MS.gene058109:CDS
TGCTAGGCAGGACATGGTGG+TGG 0.586650 5.4:+3032996 MS.gene058109:CDS
CAACAAGGGTGCTTTGCAGG+TGG 0.587645 5.4:+3033201 MS.gene058109:CDS
ACAGTTTCAATGGTAAGTCC+AGG 0.589843 5.4:-3033843 None:intergenic
CAAGAATTGCGGGTCCACCT+GGG 0.591037 5.4:-3033629 None:intergenic
GAAATGTTAGACCAGCTTCA+CGG 0.597537 5.4:-3033494 None:intergenic
GACTTAAAACCACAGGAGAA+GGG 0.599104 5.4:+3033790 MS.gene058109:CDS
ACAAGTGGTGTAGACATGCC+TGG 0.600112 5.4:+3033114 MS.gene058109:CDS
AGGGTGCTTTGCAGGTGGGA+CGG 0.601250 5.4:+3033206 MS.gene058109:CDS
AGGCATGTCTACACCACTTG+TGG 0.602236 5.4:-3033112 None:intergenic
TTCTGGATTGCTCACCCAGG+TGG 0.608006 5.4:+3033615 MS.gene058109:CDS
CAATAAAGGTGCTCGTGTGT+TGG 0.608320 5.4:+3033260 MS.gene058109:CDS
CGAAAGAAATCGGCTCAACA+GGG 0.612402 5.4:+3033768 MS.gene058109:CDS
AACAAGGGTGCTTTGCAGGT+GGG 0.613935 5.4:+3033202 MS.gene058109:CDS
GTCTTCGTCCATATGTGAAG+AGG 0.616548 5.4:+3033166 MS.gene058109:CDS
CAACAGGGACTTAAAACCAC+AGG 0.620327 5.4:+3033783 MS.gene058109:CDS
ACAGGAGAAGGGCTTGATTG+GGG 0.623900 5.4:+3033801 MS.gene058109:CDS
GTGGTAGAGGTACCTAGACT+AGG 0.632093 5.4:+3033015 MS.gene058109:CDS
AATGAGTATCACTAGGACCA+CGG 0.635157 5.4:-3033314 None:intergenic
AACAATTGCTCCAGACAGTG+AGG 0.638797 5.4:+3033452 MS.gene058109:CDS
GAGTGTATCTGAAATTCGCA+AGG 0.641296 5.4:+3032519 MS.gene058109:CDS
GGTACCTAGACTAGGAAAGG+AGG 0.643500 5.4:+3033023 MS.gene058109:CDS
GGTATATGATGTACCAACAA+GGG 0.650513 5.4:+3033187 MS.gene058109:CDS
GTTACTGCTGTGACATTCCG+TGG 0.652143 5.4:+3033297 MS.gene058109:CDS
CCAAGTCCTTGGCCAAACGA+AGG 0.657493 5.4:-3033230 None:intergenic
ACAATTGCTCCAGACAGTGA+GGG 0.658063 5.4:+3033453 MS.gene058109:CDS
GTGAAGGCCATAAAAGAATG+GGG 0.663419 5.4:+3033051 MS.gene058109:CDS
AGGTATATGATGTACCAACA+AGG 0.664650 5.4:+3033186 MS.gene058109:CDS
AGATGCTAGGCAGGACATGG+TGG 0.689622 5.4:+3032993 MS.gene058109:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCAATCAAATAATAAT+AGG - chr5.4:3032829-3032848 None:intergenic 15.0%
!!! ACATTAGTACAATTTTTTTT+GGG - chr5.4:3032859-3032878 None:intergenic 15.0%
!!! TACATTAGTACAATTTTTTT+TGG - chr5.4:3032860-3032879 None:intergenic 15.0%
!!! TATTATTATTTGATTGGTTT+TGG + chr5.4:3032828-3032847 MS.gene058109:intron 15.0%
!! AAAAAACATTGATAAAGCAT+TGG + chr5.4:3033548-3033567 MS.gene058109:CDS 20.0%
!! AAGACCTATTATTATTTGAT+TGG + chr5.4:3032822-3032841 MS.gene058109:intron 20.0%
!!! ATAGTTTGAAATAATTTGGT+TGG - chr5.4:3032793-3032812 None:intergenic 20.0%
!!! ATTTTCTTTCAAAATCTCTT+CGG - chr5.4:3032941-3032960 None:intergenic 20.0%
!!! GCAAATAGTTTGAAATAATT+TGG - chr5.4:3032797-3032816 None:intergenic 20.0%
! AATATAGGTTTCTCAATTTC+TGG - chr5.4:3033411-3033430 None:intergenic 25.0%
! CTGATTATAATTCAATCTTC+TGG + chr5.4:3033598-3033617 MS.gene058109:CDS 25.0%
! GTAATTTCTTTAACTACTTC+AGG + chr5.4:3032877-3032896 MS.gene058109:intron 25.0%
! TTATAATCAGAGATGTTTAG+TGG - chr5.4:3033588-3033607 None:intergenic 25.0%
!! TTGAAATTTTTCTTTGAGCT+CGG - chr5.4:3032665-3032684 None:intergenic 25.0%
!!! AAGTGTGTAATCTTTGATTT+TGG - chr5.4:3033081-3033100 None:intergenic 25.0%
!!! GTGATTTTAAAGTAGAAATC+AGG - chr5.4:3032625-3032644 None:intergenic 25.0%
ATCATATACCTCTTCACATA+TGG - chr5.4:3033177-3033196 None:intergenic 30.0%
TGAGAAACCTATATTTGAGA+TGG + chr5.4:3033416-3033435 MS.gene058109:CDS 30.0%
TTCAACTTGATCAAGAATTG+CGG - chr5.4:3033643-3033662 None:intergenic 30.0%
! AACCTATATTTGAGATGGTT+TGG + chr5.4:3033421-3033440 MS.gene058109:CDS 30.0%
!! AGAGAAGTACTTAGTGAATA+TGG + chr5.4:3033702-3033721 MS.gene058109:CDS 30.0%
!! GATCAAGTTGAACAAAAGTT+AGG + chr5.4:3033651-3033670 MS.gene058109:CDS 30.0%
!! GTTTCTCAATTTCTGGTATT+GGG - chr5.4:3033404-3033423 None:intergenic 30.0%
!!! ATGTTTTTTGAAACAATCCC+AGG - chr5.4:3033537-3033556 None:intergenic 30.0%
AATCAGAGATGTTTAGTGGT+TGG - chr5.4:3033584-3033603 None:intergenic 35.0%
ACCTTCTTAAAGATGTTCCT+GGG + chr5.4:3033517-3033536 MS.gene058109:CDS 35.0%
AGATGAGATGCGAAAGAAAT+CGG + chr5.4:3033758-3033777 MS.gene058109:CDS 35.0%
AGGTATATGATGTACCAACA+AGG + chr5.4:3033186-3033205 MS.gene058109:CDS 35.0%
AGTGAAGGCCATAAAAGAAT+GGG + chr5.4:3033050-3033069 MS.gene058109:CDS 35.0%
ATGGAGAACAACAGTTTCAA+TGG - chr5.4:3033856-3033875 None:intergenic 35.0%
CATGTATCTTCTCTTGATCA+TGG - chr5.4:3032911-3032930 None:intergenic 35.0%
GGTATATGATGTACCAACAA+GGG + chr5.4:3033187-3033206 MS.gene058109:CDS 35.0%
GGTTGGCAAATTTCATATCA+CGG - chr5.4:3032776-3032795 None:intergenic 35.0%
GTCCAAACCATCTCAAATAT+AGG - chr5.4:3033426-3033445 None:intergenic 35.0%
GTTGGCAAATTTCATATCAC+GGG - chr5.4:3032775-3032794 None:intergenic 35.0%
TCAACTTGATCAAGAATTGC+GGG - chr5.4:3033642-3033661 None:intergenic 35.0%
TCCAAGTGTATGTGAATACA+TGG + chr5.4:3032960-3032979 MS.gene058109:CDS 35.0%
TTCACTAAGTACTTCTCTAG+TGG - chr5.4:3033700-3033719 None:intergenic 35.0%
! TGTGCTTTGTTCAACACAAT+TGG - chr5.4:3032599-3032618 None:intergenic 35.0%
!! CATTGATAAAGCATTGGTTG+AGG + chr5.4:3033554-3033573 MS.gene058109:CDS 35.0%
!! GGTTTCTCAATTTCTGGTAT+TGG - chr5.4:3033405-3033424 None:intergenic 35.0%
!! GTGTAATCTTTGATTTTGGC+TGG - chr5.4:3033077-3033096 None:intergenic 35.0%
AACTGTTGTTCTCCATAGTG+TGG + chr5.4:3033860-3033879 MS.gene058109:CDS 40.0%
AATGAGTATCACTAGGACCA+CGG - chr5.4:3033317-3033336 None:intergenic 40.0%
ACAGTTTCAATGGTAAGTCC+AGG - chr5.4:3033846-3033865 None:intergenic 40.0%
CACCTTCTTAAAGATGTTCC+TGG + chr5.4:3033516-3033535 MS.gene058109:CDS 40.0%
CAGTGAAGGCCATAAAAGAA+TGG + chr5.4:3033049-3033068 MS.gene058109:CDS 40.0%
CTGTCCAAATGAGTATCACT+AGG - chr5.4:3033324-3033343 None:intergenic 40.0%
CTTTGTTCAACACAATTGGC+TGG - chr5.4:3032595-3032614 None:intergenic 40.0%
GAAATGTTAGACCAGCTTCA+CGG - chr5.4:3033497-3033516 None:intergenic 40.0%
GACTTAAAACCACAGGAGAA+GGG + chr5.4:3033790-3033809 MS.gene058109:CDS 40.0%
GACTTGGCTGAGAACAATAA+AGG + chr5.4:3033246-3033265 MS.gene058109:CDS 40.0%
GCCATGTATTCACATACACT+TGG - chr5.4:3032964-3032983 None:intergenic 40.0%
GTGAAGGCCATAAAAGAATG+GGG + chr5.4:3033051-3033070 MS.gene058109:CDS 40.0%
TACCAACTCACGAAACTCTT+AGG + chr5.4:3033144-3033163 MS.gene058109:CDS 40.0%
TGGTCCTAGTGATACTCATT+TGG + chr5.4:3033317-3033336 MS.gene058109:CDS 40.0%
! ACTCATTTGGACAGTCTTGT+TGG + chr5.4:3033330-3033349 MS.gene058109:CDS 40.0%
! CTAGTGGCTTTCATCTTTTC+AGG - chr5.4:3033684-3033703 None:intergenic 40.0%
! GAGTGTATCTGAAATTCGCA+AGG + chr5.4:3032519-3032538 MS.gene058109:CDS 40.0%
! TCCCAGGAACATCTTTAAGA+AGG - chr5.4:3033521-3033540 None:intergenic 40.0%
! TTGATCTTTTGCACCACAAG+TGG + chr5.4:3033099-3033118 MS.gene058109:CDS 40.0%
!! GAGTTTCGTGAGTTGGTAAT+CGG - chr5.4:3033142-3033161 None:intergenic 40.0%
AACAATTGCTCCAGACAGTG+AGG + chr5.4:3033452-3033471 MS.gene058109:CDS 45.0%
ACAATTGCTCCAGACAGTGA+GGG + chr5.4:3033453-3033472 MS.gene058109:CDS 45.0%
ACCTTCATTAGATGCTAGGC+AGG + chr5.4:3032984-3033003 MS.gene058109:CDS 45.0%
ATTAGATGCTAGGCAGGACA+TGG + chr5.4:3032990-3033009 MS.gene058109:CDS 45.0%
ATTGTTCTCAGCCAAGTCCT+TGG - chr5.4:3033244-3033263 None:intergenic 45.0%
CAACAGGGACTTAAAACCAC+AGG + chr5.4:3033783-3033802 MS.gene058109:CDS 45.0%
CTTGTTGGACAAGCACTCTT+TGG + chr5.4:3033345-3033364 MS.gene058109:CDS 45.0%
GACCTAAGAGTTTCGTGAGT+TGG - chr5.4:3033149-3033168 None:intergenic 45.0%
GGACTTAAAACCACAGGAGA+AGG + chr5.4:3033789-3033808 MS.gene058109:CDS 45.0%
GTCTTCGTCCATATGTGAAG+AGG + chr5.4:3033166-3033185 MS.gene058109:CDS 45.0%
TCCTGCCTAGCATCTAATGA+AGG - chr5.4:3032988-3033007 None:intergenic 45.0%
TGGCACCTTCATTAGATGCT+AGG + chr5.4:3032980-3032999 MS.gene058109:CDS 45.0%
TTCACGGAGATGACCATCAA+TGG - chr5.4:3033481-3033500 None:intergenic 45.0%
! CGAAAGAAATCGGCTCAACA+GGG + chr5.4:3033768-3033787 MS.gene058109:CDS 45.0%
! CTTGATTGGGGTGTGTTGTT+CGG + chr5.4:3033813-3033832 MS.gene058109:CDS 45.0%
!! AGAGGTACCTAGACTAGGAA+AGG + chr5.4:3033020-3033039 MS.gene058109:CDS 45.0%
!! CAATAAAGGTGCTCGTGTGT+TGG + chr5.4:3033260-3033279 MS.gene058109:CDS 45.0%
ACAAGTGGTGTAGACATGCC+TGG + chr5.4:3033114-3033133 MS.gene058109:CDS 50.0%
ACAGGAGAAGGGCTTGATTG+GGG + chr5.4:3033801-3033820 MS.gene058109:CDS 50.0%
AGGCATGTCTACACCACTTG+TGG - chr5.4:3033115-3033134 None:intergenic 50.0%
ATCTTCTGGATTGCTCACCC+AGG + chr5.4:3033612-3033631 MS.gene058109:CDS 50.0%
CAATGGCCATGATGGTTGCA+GGG - chr5.4:3032561-3032580 None:intergenic 50.0%
CACAGGAGAAGGGCTTGATT+GGG + chr5.4:3033800-3033819 MS.gene058109:CDS 50.0%
GGTACCTAGACTAGGAAAGG+AGG + chr5.4:3033023-3033042 MS.gene058109:CDS 50.0%
GTTACTGCTGTGACATTCCG+TGG + chr5.4:3033297-3033316 MS.gene058109:CDS 50.0%
! GCGAAAGAAATCGGCTCAAC+AGG + chr5.4:3033767-3033786 MS.gene058109:CDS 50.0%
! GGACAAGCACTCTTTGGAGA+TGG + chr5.4:3033351-3033370 MS.gene058109:CDS 50.0%
!! AACAAGGGTGCTTTGCAGGT+GGG + chr5.4:3033202-3033221 MS.gene058109:CDS 50.0%
!! GTGGTAGAGGTACCTAGACT+AGG + chr5.4:3033015-3033034 MS.gene058109:CDS 50.0%
!! TACCAACAAGGGTGCTTTGC+AGG + chr5.4:3033198-3033217 MS.gene058109:CDS 50.0%
!! TGGCTGGCCCCATTCTTTTA+TGG - chr5.4:3033061-3033080 None:intergenic 50.0%
AGAAGGCCCTGCAACCATCA+TGG + chr5.4:3032552-3032571 MS.gene058109:CDS 55.0%
AGATGCTAGGCAGGACATGG+TGG + chr5.4:3032993-3033012 MS.gene058109:CDS 55.0%
AGGAAAGGAGGCTGCAGTGA+AGG + chr5.4:3033035-3033054 MS.gene058109:CDS 55.0%
CAAGAATTGCGGGTCCACCT+GGG - chr5.4:3033632-3033651 None:intergenic 55.0%
CCAAGTCCTTGGCCAAACGA+AGG - chr5.4:3033233-3033252 None:intergenic 55.0%
CCAATCAAGCCCTTCTCCTG+TGG - chr5.4:3033802-3033821 None:intergenic 55.0%
CCAATGGCCATGATGGTTGC+AGG - chr5.4:3032562-3032581 None:intergenic 55.0%
CCACAGGAGAAGGGCTTGAT+TGG + chr5.4:3033799-3033818 MS.gene058109:CDS 55.0%
CCTGCAACCATCATGGCCAT+TGG + chr5.4:3032559-3032578 MS.gene058109:CDS 55.0%
CCTTCGTTTGGCCAAGGACT+TGG + chr5.4:3033230-3033249 MS.gene058109:CDS 55.0%
CGCAAGGCTCAAAGAGCAGA+AGG + chr5.4:3032535-3032554 MS.gene058109:CDS 55.0%
GACAGTGAGGGAGCCATTGA+TGG + chr5.4:3033465-3033484 MS.gene058109:CDS 55.0%
GATGGTCATCTCCGTGAAGC+TGG + chr5.4:3033483-3033502 MS.gene058109:CDS 55.0%
GCAGCCTCCTTTCCTAGTCT+AGG - chr5.4:3033030-3033049 None:intergenic 55.0%
GGAGCTGCTGCACTCATTGT+TGG + chr5.4:3033372-3033391 MS.gene058109:CDS 55.0%
GGCTGGATTTGCAGTGCCAA+TGG - chr5.4:3032578-3032597 None:intergenic 55.0%
TCAAGAATTGCGGGTCCACC+TGG - chr5.4:3033633-3033652 None:intergenic 55.0%
TCAATGGCTCCCTCACTGTC+TGG - chr5.4:3033465-3033484 None:intergenic 55.0%
TGCAGTGCCAATGGCCATGA+TGG - chr5.4:3032569-3032588 None:intergenic 55.0%
TTCTGGATTGCTCACCCAGG+TGG + chr5.4:3033615-3033634 MS.gene058109:CDS 55.0%
! CACCTGCAAAGCACCCTTGT+TGG - chr5.4:3033203-3033222 None:intergenic 55.0%
! TGGGGTGTGTTGTTCGGCTT+TGG + chr5.4:3033819-3033838 MS.gene058109:CDS 55.0%
!! CAACAAGGGTGCTTTGCAGG+TGG + chr5.4:3033201-3033220 MS.gene058109:CDS 55.0%
!! GTGTTGTTCGGCTTTGGACC+TGG + chr5.4:3033825-3033844 MS.gene058109:CDS 55.0%
AGGTGGGACGGTCCTTCGTT+TGG + chr5.4:3033218-3033237 MS.gene058109:CDS 60.0%
GACGGTCCTTCGTTTGGCCA+AGG + chr5.4:3033224-3033243 MS.gene058109:CDS 60.0%
TGCTAGGCAGGACATGGTGG+TGG + chr5.4:3032996-3033015 MS.gene058109:CDS 60.0%
! AGGGTGCTTTGCAGGTGGGA+CGG + chr5.4:3033206-3033225 MS.gene058109:CDS 60.0%
!! GCAGGACATGGTGGTGGTAG+AGG + chr5.4:3033002-3033021 MS.gene058109:CDS 60.0%
!! GTGAGTTGGTAATCGGCGCC+AGG - chr5.4:3033135-3033154 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 3032514 3033890 3032514 ID=MS.gene058109
chr5.4 mRNA 3032514 3033890 3032514 ID=MS.gene058109.t1;Parent=MS.gene058109
chr5.4 exon 3032514 3032691 3032514 ID=MS.gene058109.t1.exon1;Parent=MS.gene058109.t1
chr5.4 CDS 3032514 3032691 3032514 ID=cds.MS.gene058109.t1;Parent=MS.gene058109.t1
chr5.4 exon 3032899 3033890 3032899 ID=MS.gene058109.t1.exon2;Parent=MS.gene058109.t1
chr5.4 CDS 3032899 3033890 3032899 ID=cds.MS.gene058109.t1;Parent=MS.gene058109.t1
Gene Sequence

>MS.gene058109

ATGGTGAGTGTATCTGAAATTCGCAAGGCTCAAAGAGCAGAAGGCCCTGCAACCATCATGGCCATTGGCACTGCAAATCCAGCCAATTGTGTTGAACAAAGCACATATCCTGATTTCTACTTTAAAATCACAAATAGTGAGCACAAAACCGAGCTCAAAGAAAAATTTCAACGCATGTGTAAGTACTTTTTTGCATTATTATTTTTATGATCACAATAGTTAAATTACATATAACATGACACAAATGTTGTAGAATCACCCGTGATATGAAATTTGCCAACCAAATTATTTCAAACTATTTGCATTAAAAGACCTATTATTATTTGATTGGTTTTGGTATTACCCAAAAAAAATTGTACTAATGTAATTTCTTTAACTACTTCAGGTGATAAATCCATGATCAAGAGAAGATACATGTATCTTACCGAAGAGATTTTGAAAGAAAATCCAAGTGTATGTGAATACATGGCACCTTCATTAGATGCTAGGCAGGACATGGTGGTGGTAGAGGTACCTAGACTAGGAAAGGAGGCTGCAGTGAAGGCCATAAAAGAATGGGGCCAGCCAAAATCAAAGATTACACACTTGATCTTTTGCACCACAAGTGGTGTAGACATGCCTGGCGCCGATTACCAACTCACGAAACTCTTAGGTCTTCGTCCATATGTGAAGAGGTATATGATGTACCAACAAGGGTGCTTTGCAGGTGGGACGGTCCTTCGTTTGGCCAAGGACTTGGCTGAGAACAATAAAGGTGCTCGTGTGTTGGTTGTTTGTTCTGAAGTTACTGCTGTGACATTCCGTGGTCCTAGTGATACTCATTTGGACAGTCTTGTTGGACAAGCACTCTTTGGAGATGGAGCTGCTGCACTCATTGTTGGTTCTGACCCAATACCAGAAATTGAGAAACCTATATTTGAGATGGTTTGGACTGCACAAACAATTGCTCCAGACAGTGAGGGAGCCATTGATGGTCATCTCCGTGAAGCTGGTCTAACATTTCACCTTCTTAAAGATGTTCCTGGGATTGTTTCAAAAAACATTGATAAAGCATTGGTTGAGGCTTTCCAACCACTAAACATCTCTGATTATAATTCAATCTTCTGGATTGCTCACCCAGGTGGACCCGCAATTCTTGATCAAGTTGAACAAAAGTTAGGCTTAAAACCTGAAAAGATGAAAGCCACTAGAGAAGTACTTAGTGAATATGGTAACATGTCAAGTGCATGTGTATTGTTTATCTTAGATGAGATGCGAAAGAAATCGGCTCAACAGGGACTTAAAACCACAGGAGAAGGGCTTGATTGGGGTGTGTTGTTCGGCTTTGGACCTGGACTTACCATTGAAACTGTTGTTCTCCATAGTGTGGCTCTATGA

Protein sequence

>MS.gene058109.t1

MVSVSEIRKAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLNISDYNSIFWIAHPGGPAILDQVEQKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAL