Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21943.t1 | XP_003610955.1 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.90E-95 | 357.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21943.t1 | F4I9J7 | 63.5 | 181 | 56 | 6 | 7 | 178 | 5 | 184 | 3.3e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21943.t1 | G7K988 | 99.4 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 2.1e-95 | 357.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21943 | MS.gene30557 | PPI |
| MS.gene68136 | MS.gene21943 | PPI |
| MS.gene21943 | MS.gene014199 | PPI |
| MS.gene21943 | MS.gene41129 | PPI |
| MS.gene21943 | MS.gene68735 | PPI |
| MS.gene21943 | MS.gene021158 | PPI |
| MS.gene21943 | MS.gene003999 | PPI |
| MS.gene21943 | MS.gene063086 | PPI |
| MS.gene21943 | MS.gene28807 | PPI |
| MS.gene22500 | MS.gene21943 | PPI |
| MS.gene21943 | MS.gene072702 | PPI |
| MS.gene21943 | MS.gene07051 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21943.t1 | MTR_5g008890 | 99.444 | 180 | 1 | 0 | 1 | 180 | 1 | 180 | 6.34e-132 | 367 |
| MS.gene21943.t1 | MTR_3g054060 | 48.276 | 174 | 52 | 5 | 1 | 171 | 31 | 169 | 8.36e-44 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21943.t1 | AT1G51510 | 64.246 | 179 | 54 | 6 | 9 | 178 | 7 | 184 | 5.07e-74 | 221 |
| MS.gene21943.t1 | AT5G64200 | 32.353 | 102 | 68 | 1 | 79 | 180 | 5 | 105 | 5.17e-11 | 60.5 |
| MS.gene21943.t1 | AT5G64200 | 32.353 | 102 | 68 | 1 | 79 | 180 | 5 | 105 | 5.17e-11 | 60.5 |
Find 43 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAACCATTTATGTTGAT+TGG | 0.221624 | 5.1:+2850604 | MS.gene21943:CDS |
| TATTGAAGGATGGATTATTT+TGG | 0.283878 | 5.1:+2848185 | MS.gene21943:CDS |
| AACTCTCGTCTCGCTGATTC+CGG | 0.283971 | 5.1:+2848027 | MS.gene21943:CDS |
| GAAAGCCCAATCAACATAAA+TGG | 0.296555 | 5.1:-2850610 | None:intergenic |
| CGCCGCCGACGGAGAAGCTT+TGG | 0.306556 | 5.1:+2847849 | MS.gene21943:CDS |
| AGTGATGGCGGATTTGAGTT+TGG | 0.318147 | 5.1:-2847944 | None:intergenic |
| GATGATTTGCAGAATGCTTT+TGG | 0.361063 | 5.1:+2848237 | MS.gene21943:CDS |
| GTGATGGCGGATTTGAGTTT+GGG | 0.363430 | 5.1:-2847943 | None:intergenic |
| CTGACGGAAACCGCGACCTT+TGG | 0.364553 | 5.1:-2847983 | None:intergenic |
| CTTCTAACTGACTCATTGAT+AGG | 0.375297 | 5.1:-2850642 | None:intergenic |
| ACAAACCATTTATGTTGATT+GGG | 0.381801 | 5.1:+2850605 | MS.gene21943:CDS |
| ATGAGTCAGTTAGAAGAAAC+AGG | 0.412632 | 5.1:+2850649 | MS.gene21943:CDS |
| CTCACTGCTGAGGGTGGTCC+TGG | 0.420911 | 5.1:+2848060 | MS.gene21943:CDS |
| GCCAGAGGAAGATGACTTGA+TGG | 0.429124 | 5.1:+2847879 | MS.gene21943:CDS |
| GAGACGAGAGTTACGGTTAG+AGG | 0.454033 | 5.1:-2848016 | None:intergenic |
| GCGGATTTGAGTTTGGGATG+TGG | 0.456064 | 5.1:-2847937 | None:intergenic |
| CAAAGGTCGCGGTTTCCGTC+AGG | 0.458944 | 5.1:+2847984 | MS.gene21943:CDS |
| TTGAATCTTGATCGCCGTAC+TGG | 0.470728 | 5.1:+2848288 | MS.gene21943:CDS |
| AGAGTTACGGTTAGAGGAAT+CGG | 0.477329 | 5.1:-2848010 | None:intergenic |
| TCCATCAAGTCATCTTCCTC+TGG | 0.480725 | 5.1:-2847880 | None:intergenic |
| GTTGATTGGGCTTTCAGCAG+TGG | 0.486700 | 5.1:+2850618 | MS.gene21943:CDS |
| CTCTATTCAGCGACGATGCA+AGG | 0.487696 | 5.1:+2847823 | None:intergenic |
| AATGCAATAGAGAATTTGAA+TGG | 0.500993 | 5.1:+2850567 | MS.gene21943:CDS |
| TGGGGATACGAACATCTTTG+AGG | 0.513262 | 5.1:-2848084 | None:intergenic |
| GGGATGTGGAGGAGAAGCTT+CGG | 0.519462 | 5.1:-2847923 | None:intergenic |
| AGCAGTGAGAGTATCGAAAC+CGG | 0.528470 | 5.1:-2848046 | None:intergenic |
| TTCGATACTCTCACTGCTGA+GGG | 0.535196 | 5.1:+2848051 | MS.gene21943:CDS |
| ATGCAAGGAAGCGCCGCCGA+CGG | 0.548735 | 5.1:+2847838 | MS.gene21943:CDS |
| ATGAGCGCTCTGAGGAAGCT+CGG | 0.562915 | 5.1:+2850544 | MS.gene21943:CDS |
| AATCAGCGAGACGAGAGTTA+CGG | 0.563114 | 5.1:-2848023 | None:intergenic |
| TACGAACATCTTTGAGGACC+AGG | 0.563747 | 5.1:-2848078 | None:intergenic |
| GATGACTTGATGGACGAAGA+AGG | 0.572561 | 5.1:+2847889 | MS.gene21943:CDS |
| GATTTGAGTTTGGGATGTGG+AGG | 0.573507 | 5.1:-2847934 | None:intergenic |
| AGCTTTGGATTTCGAGCCAG+AGG | 0.579650 | 5.1:+2847864 | MS.gene21943:CDS |
| ATCCAAAGCTTCTCCGTCGG+CGG | 0.583085 | 5.1:-2847851 | None:intergenic |
| TTTCGATACTCTCACTGCTG+AGG | 0.590321 | 5.1:+2848050 | MS.gene21943:CDS |
| TTTGGGAACGGAAGTGATGG+CGG | 0.614347 | 5.1:-2847956 | None:intergenic |
| GATACTCTCACTGCTGAGGG+TGG | 0.647746 | 5.1:+2848054 | MS.gene21943:CDS |
| GCACCTTAACAAAACCAGTA+CGG | 0.658816 | 5.1:-2848302 | None:intergenic |
| TTTGGTGACTGGTGTACATG+AGG | 0.661358 | 5.1:+2848203 | MS.gene21943:CDS |
| TAGAGGAATCGGAATCCTGA+CGG | 0.677725 | 5.1:-2847999 | None:intergenic |
| GATTGAATATGAGCGCTCTG+AGG | 0.688874 | 5.1:+2850536 | MS.gene21943:CDS |
| GAAATCCAAAGCTTCTCCGT+CGG | 0.701772 | 5.1:-2847854 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTTAATAAAATAAGATA+AGG | - | chr5.1:2850257-2850276 | None:intergenic | 10.0% |
| !!! | TATCTTATTTTATTAAGAAA+AGG | + | chr5.1:2850257-2850276 | MS.gene21943:intron | 10.0% |
| !! | AAATTGACAAAAATTGAAAT+TGG | - | chr5.1:2848107-2848126 | None:intergenic | 15.0% |
| !! | AATTGACAAAAATTGAAATT+GGG | - | chr5.1:2848106-2848125 | None:intergenic | 15.0% |
| !! | GAAAGAAAGAAAAAAAAAAA+AGG | - | chr5.1:2848934-2848953 | None:intergenic | 15.0% |
| !!! | TACTTTTCATTCTTAAATTA+TGG | + | chr5.1:2848543-2848562 | MS.gene21943:intron | 15.0% |
| !! | ATTGACAAAAATTGAAATTG+GGG | - | chr5.1:2848105-2848124 | None:intergenic | 20.0% |
| !! | ATTTGAAAAAAAAATACTGC+AGG | - | chr5.1:2850056-2850075 | None:intergenic | 20.0% |
| !! | GAAAGAAAAAAAAAAAAGGA+AGG | - | chr5.1:2848930-2848949 | None:intergenic | 20.0% |
| !! | TTGAGAAATATATGGAAAAA+TGG | - | chr5.1:2849243-2849262 | None:intergenic | 20.0% |
| !! | TTTATAGACAGTGTATATTA+CGG | - | chr5.1:2849433-2849452 | None:intergenic | 20.0% |
| !! | TTTGAAAAAAAAATACTGCA+GGG | - | chr5.1:2850055-2850074 | None:intergenic | 20.0% |
| !!! | AATGCAGTTTTGATTTTTAA+AGG | + | chr5.1:2850101-2850120 | MS.gene21943:intron | 20.0% |
| !!! | CTTTGAAAAAAAAAAAAGGA+AGG | + | chr5.1:2849039-2849058 | MS.gene21943:intron | 20.0% |
| !!! | TACTTGTAATTTTGTAAACA+GGG | + | chr5.1:2850300-2850319 | MS.gene21943:intron | 20.0% |
| !!! | TGATAAGCATTTTGATTTTA+GGG | + | chr5.1:2850504-2850523 | MS.gene21943:intron | 20.0% |
| ! | AAAACAAAACCCTCATAATT+TGG | - | chr5.1:2848844-2848863 | None:intergenic | 25.0% |
| ! | AAACAAAACCCTCATAATTT+GGG | - | chr5.1:2848843-2848862 | None:intergenic | 25.0% |
| ! | AAGTTGCTAAATAAAGTTAC+AGG | - | chr5.1:2850432-2850451 | None:intergenic | 25.0% |
| ! | AATGCAATAGAGAATTTGAA+TGG | + | chr5.1:2850567-2850586 | MS.gene21943:CDS | 25.0% |
| ! | AATTCAAGTCATGAATCAAA+TGG | + | chr5.1:2849527-2849546 | MS.gene21943:intron | 25.0% |
| ! | AGTGTATTAATCTATGTTGT+TGG | - | chr5.1:2848694-2848713 | None:intergenic | 25.0% |
| ! | CAAATCTTCACATGATAAAA+TGG | - | chr5.1:2850474-2850493 | None:intergenic | 25.0% |
| ! | CAGAAGGTTAACAATAAAAA+AGG | - | chr5.1:2849318-2849337 | None:intergenic | 25.0% |
| ! | CTAAATAAAGTTACAGGAAA+AGG | - | chr5.1:2850426-2850445 | None:intergenic | 25.0% |
| ! | GTGTATCATTGTATCTATAT+GGG | - | chr5.1:2849673-2849692 | None:intergenic | 25.0% |
| ! | GTGTATTAATCTATGTTGTT+GGG | - | chr5.1:2848693-2848712 | None:intergenic | 25.0% |
| ! | TCATGACTTGAATTATTTGA+AGG | - | chr5.1:2849521-2849540 | None:intergenic | 25.0% |
| ! | TGTGTATCATTGTATCTATA+TGG | - | chr5.1:2849674-2849693 | None:intergenic | 25.0% |
| ! | TTACCATTAATCAATCACTT+AGG | - | chr5.1:2849280-2849299 | None:intergenic | 25.0% |
| !! | ACAAACCATTTATGTTGATT+GGG | + | chr5.1:2850605-2850624 | MS.gene21943:CDS | 25.0% |
| !! | CATTTTATCATGTGAAGATT+TGG | + | chr5.1:2850472-2850491 | MS.gene21943:intron | 25.0% |
| !! | CTACTTGTAATTTTGTAAAC+AGG | + | chr5.1:2850299-2850318 | MS.gene21943:intron | 25.0% |
| !! | TGAATCAGAAGATCTATTTT+CGG | + | chr5.1:2849388-2849407 | MS.gene21943:intron | 25.0% |
| !! | TTTGAAGTAGGAAATGTATA+TGG | + | chr5.1:2848459-2848478 | MS.gene21943:intron | 25.0% |
| !!! | AATTGCGTGATTTTGATTTT+AGG | + | chr5.1:2848127-2848146 | MS.gene21943:intron | 25.0% |
| !!! | AGGGCTTTGAAAAAAAAAAA+AGG | + | chr5.1:2849035-2849054 | MS.gene21943:intron | 25.0% |
| !!! | ATTGCGTGATTTTGATTTTA+GGG | + | chr5.1:2848128-2848147 | MS.gene21943:intron | 25.0% |
| !!! | CTGATAAGCATTTTGATTTT+AGG | + | chr5.1:2850503-2850522 | MS.gene21943:intron | 25.0% |
| !!! | CTTTTTTATTGTTAACCTTC+TGG | + | chr5.1:2849316-2849335 | MS.gene21943:intron | 25.0% |
| !!! | GTATAGATTGACTAGTTTTA+TGG | + | chr5.1:2848401-2848420 | MS.gene21943:intron | 25.0% |
| !!! | TATTGAAGGATGGATTATTT+TGG | + | chr5.1:2848185-2848204 | MS.gene21943:CDS | 25.0% |
| !!! | TTGATTTTTAAAGGATGTAG+TGG | + | chr5.1:2850110-2850129 | MS.gene21943:intron | 25.0% |
| AAAAAAAAGGAAGGAGAAAG+CGG | + | chr5.1:2849048-2849067 | MS.gene21943:intron | 30.0% | |
| AACAAAACCCTCATAATTTG+GGG | - | chr5.1:2848842-2848861 | None:intergenic | 30.0% | |
| AACTCAAAATTGTATTCGAG+GGG | - | chr5.1:2848794-2848813 | None:intergenic | 30.0% | |
| AAGCCTAAGTGATTGATTAA+TGG | + | chr5.1:2849274-2849293 | MS.gene21943:intron | 30.0% | |
| AAGTAGGAAATGTATATGGA+CGG | + | chr5.1:2848463-2848482 | MS.gene21943:intron | 30.0% | |
| ATTAATCTATGTTGTTGGGA+GGG | - | chr5.1:2848689-2848708 | None:intergenic | 30.0% | |
| CACAAACCATTTATGTTGAT+TGG | + | chr5.1:2850604-2850623 | MS.gene21943:CDS | 30.0% | |
| CGATTCTCATTTCATTCTAA+TGG | - | chr5.1:2849617-2849636 | None:intergenic | 30.0% | |
| GAACTCAAAATTGTATTCGA+GGG | - | chr5.1:2848795-2848814 | None:intergenic | 30.0% | |
| TATGAACATAGAAACAGAGA+TGG | - | chr5.1:2850353-2850372 | None:intergenic | 30.0% | |
| TATTAATCTATGTTGTTGGG+AGG | - | chr5.1:2848690-2848709 | None:intergenic | 30.0% | |
| TGAGATGATAACTTCAGTTA+AGG | - | chr5.1:2849865-2849884 | None:intergenic | 30.0% | |
| TTGGGAGTTTGAGAAATATA+TGG | - | chr5.1:2849251-2849270 | None:intergenic | 30.0% | |
| ! | AAAATTTGATAACCATGCTC+CGG | - | chr5.1:2849369-2849388 | None:intergenic | 30.0% |
| ! | AATCTAAGGGTATGATTGTA+GGG | + | chr5.1:2848494-2848513 | MS.gene21943:intron | 30.0% |
| ! | TAATCTAAGGGTATGATTGT+AGG | + | chr5.1:2848493-2848512 | MS.gene21943:intron | 30.0% |
| ! | TTTTTGTAGCTATTGAAGGA+TGG | + | chr5.1:2848175-2848194 | MS.gene21943:intron | 30.0% |
| !! | GAGAATCGTTTTAGTGAATT+GGG | + | chr5.1:2849629-2849648 | MS.gene21943:intron | 30.0% |
| !! | TGAGAATCGTTTTAGTGAAT+TGG | + | chr5.1:2849628-2849647 | MS.gene21943:intron | 30.0% |
| !!! | GATAGAAAGTGTTTTGAAGT+AGG | + | chr5.1:2848447-2848466 | MS.gene21943:intron | 30.0% |
| AAAAAAAAGGAAGGAGCAAG+TGG | - | chr5.1:2848921-2848940 | None:intergenic | 35.0% | |
| AAACTCCACATCATGGTTAT+CGG | - | chr5.1:2849766-2849785 | None:intergenic | 35.0% | |
| AAATGTATATGGACGGGTAA+TGG | + | chr5.1:2848470-2848489 | MS.gene21943:intron | 35.0% | |
| AACTAGTCAATCTATACGAG+TGG | - | chr5.1:2848398-2848417 | None:intergenic | 35.0% | |
| AATACAAAATCCCCCTCATT+TGG | + | chr5.1:2849124-2849143 | MS.gene21943:intron | 35.0% | |
| ACAAAACCCTCATAATTTGG+GGG | - | chr5.1:2848841-2848860 | None:intergenic | 35.0% | |
| ACAATGATACACACTAACTG+AGG | + | chr5.1:2849681-2849700 | MS.gene21943:intron | 35.0% | |
| ACACTAACTGAGGTTATTGA+TGG | + | chr5.1:2849691-2849710 | MS.gene21943:intron | 35.0% | |
| ACTAGTCAATCTATACGAGT+GGG | - | chr5.1:2848397-2848416 | None:intergenic | 35.0% | |
| ACTCAAAATTGTATTCGAGG+AGG | - | chr5.1:2848793-2848812 | None:intergenic | 35.0% | |
| AGTAGGAAATGTATATGGAC+GGG | + | chr5.1:2848464-2848483 | MS.gene21943:intron | 35.0% | |
| AGTGAATTGGGATTCAAGAT+GGG | + | chr5.1:2849641-2849660 | MS.gene21943:intron | 35.0% | |
| ATACAAAATCCCCCTCATTT+GGG | + | chr5.1:2849125-2849144 | MS.gene21943:intron | 35.0% | |
| ATGAAATAGAAGACATTGGG+AGG | + | chr5.1:2849071-2849090 | MS.gene21943:intron | 35.0% | |
| ATGAGTCAGTTAGAAGAAAC+AGG | + | chr5.1:2850649-2850668 | MS.gene21943:CDS | 35.0% | |
| CACTAACTGAGGTTATTGAT+GGG | + | chr5.1:2849692-2849711 | MS.gene21943:intron | 35.0% | |
| CGGATGAAATAGAAGACATT+GGG | + | chr5.1:2849068-2849087 | MS.gene21943:intron | 35.0% | |
| CTCAAAATTGTATTCGAGGA+GGG | - | chr5.1:2848792-2848811 | None:intergenic | 35.0% | |
| GAAAGCCCAATCAACATAAA+TGG | - | chr5.1:2850613-2850632 | None:intergenic | 35.0% | |
| GAGATGGCAGAAAATTTACT+TGG | - | chr5.1:2850337-2850356 | None:intergenic | 35.0% | |
| GGAAAGTTAAGTCCAACTAA+CGG | - | chr5.1:2849898-2849917 | None:intergenic | 35.0% | |
| GGAACTCAAAATTGTATTCG+AGG | - | chr5.1:2848796-2848815 | None:intergenic | 35.0% | |
| TAGTGAATTGGGATTCAAGA+TGG | + | chr5.1:2849640-2849659 | MS.gene21943:intron | 35.0% | |
| TGAAATAGAAGACATTGGGA+GGG | + | chr5.1:2849072-2849091 | MS.gene21943:intron | 35.0% | |
| TTAATCTATGTTGTTGGGAG+GGG | - | chr5.1:2848688-2848707 | None:intergenic | 35.0% | |
| ! | AATATCAAGGTACCTTTCCT+CGG | - | chr5.1:2849346-2849365 | None:intergenic | 35.0% |
| ! | CAGAATGCTTTTGGTGAATA+TGG | + | chr5.1:2848246-2848265 | MS.gene21943:CDS | 35.0% |
| ! | CATATCTTTTCACCGTTAGT+TGG | + | chr5.1:2849883-2849902 | MS.gene21943:intron | 35.0% |
| ! | CTAAGGCTTTGTCTTTGTTT+GGG | - | chr5.1:2848986-2849005 | None:intergenic | 35.0% |
| ! | CTTCTAACTGACTCATTGAT+AGG | - | chr5.1:2850645-2850664 | None:intergenic | 35.0% |
| ! | GAATTATAGCCAGCTTTTGT+CGG | - | chr5.1:2849575-2849594 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGGAGTTTAGA+GGG | - | chr5.1:2848975-2848994 | None:intergenic | 35.0% |
| !! | CAATCACTTAGGCTTTGTTT+GGG | - | chr5.1:2849269-2849288 | None:intergenic | 35.0% |
| !! | GATGATTTGCAGAATGCTTT+TGG | + | chr5.1:2848237-2848256 | MS.gene21943:CDS | 35.0% |
| !! | TCAATCACTTAGGCTTTGTT+TGG | - | chr5.1:2849270-2849289 | None:intergenic | 35.0% |
| !!! | ACCTTTGGTTTTTTTGGGAA+CGG | - | chr5.1:2847971-2847990 | None:intergenic | 35.0% |
| !!! | GCTGTTTTTGTAGCTATTGA+AGG | + | chr5.1:2848171-2848190 | MS.gene21943:intron | 35.0% |
| !!! | TATGATTGTAGGGTTTTGGA+GGG | + | chr5.1:2848504-2848523 | MS.gene21943:intron | 35.0% |
| AGAGTTACGGTTAGAGGAAT+CGG | - | chr5.1:2848013-2848032 | None:intergenic | 40.0% | |
| AGATACCGATAACCATGATG+TGG | + | chr5.1:2849758-2849777 | MS.gene21943:intron | 40.0% | |
| AGGAAATAGAGGAGTTTGAG+AGG | - | chr5.1:2848898-2848917 | None:intergenic | 40.0% | |
| ATTGAGAGGTAGGTAAAGTG+AGG | + | chr5.1:2849787-2849806 | MS.gene21943:intron | 40.0% | |
| CAAAACCCTCATAATTTGGG+GGG | - | chr5.1:2848840-2848859 | None:intergenic | 40.0% | |
| CAGTTAAGGTTGCATCAATC+AGG | - | chr5.1:2849851-2849870 | None:intergenic | 40.0% | |
| CAGTTTCAGAAACTGCAGAT+TGG | + | chr5.1:2850396-2850415 | MS.gene21943:intron | 40.0% | |
| CCAAACAAAGACAAAGCCTT+AGG | + | chr5.1:2848984-2849003 | MS.gene21943:intron | 40.0% | |
| CCTAACAAGTAACTGTGTGT+AGG | + | chr5.1:2850151-2850170 | MS.gene21943:intron | 40.0% | |
| CCTACACACAGTTACTTGTT+AGG | - | chr5.1:2850154-2850173 | None:intergenic | 40.0% | |
| CTCAATCAAACTCCACATCA+TGG | - | chr5.1:2849773-2849792 | None:intergenic | 40.0% | |
| GAAATAGAAGACATTGGGAG+GGG | + | chr5.1:2849073-2849092 | MS.gene21943:intron | 40.0% | |
| GAAATAGAGGAGTTTGAGAG+GGG | - | chr5.1:2848896-2848915 | None:intergenic | 40.0% | |
| GCACCTTAACAAAACCAGTA+CGG | - | chr5.1:2848305-2848324 | None:intergenic | 40.0% | |
| GCGGATGAAATAGAAGACAT+TGG | + | chr5.1:2849067-2849086 | MS.gene21943:intron | 40.0% | |
| GGAAATAGAGGAGTTTGAGA+GGG | - | chr5.1:2848897-2848916 | None:intergenic | 40.0% | |
| GTTATTGACCTCAAGCTGTT+AGG | + | chr5.1:2849967-2849986 | MS.gene21943:intron | 40.0% | |
| TACAAAATCCCCCTCATTTG+GGG | + | chr5.1:2849126-2849145 | MS.gene21943:intron | 40.0% | |
| TCATGAATCAAATGGCAAGC+TGG | + | chr5.1:2849535-2849554 | MS.gene21943:intron | 40.0% | |
| TCCATTTCATGTCTCAGTCA+TGG | + | chr5.1:2849915-2849934 | MS.gene21943:intron | 40.0% | |
| TCCGTTCCCAAAAAAACCAA+AGG | + | chr5.1:2847967-2847986 | MS.gene21943:CDS | 40.0% | |
| TGATGTGGAGTTTGATTGAG+AGG | + | chr5.1:2849773-2849792 | MS.gene21943:intron | 40.0% | |
| ! | AGGGTATGATTGTAGGGTTT+TGG | + | chr5.1:2848500-2848519 | MS.gene21943:intron | 40.0% |
| ! | ATATCAAGGTACCTTTCCTC+GGG | - | chr5.1:2849345-2849364 | None:intergenic | 40.0% |
| ! | CACACAGTTACTTGTTAGGA+AGG | - | chr5.1:2850150-2850169 | None:intergenic | 40.0% |
| ! | CCTAAGGCTTTGTCTTTGTT+TGG | - | chr5.1:2848987-2849006 | None:intergenic | 40.0% |
| ! | GACGGGTAATGGTAATCTAA+GGG | + | chr5.1:2848481-2848500 | MS.gene21943:intron | 40.0% |
| ! | GTCTTTGTTTGGGAGTTTAG+AGG | - | chr5.1:2848976-2848995 | None:intergenic | 40.0% |
| !! | GGAAAGGTACCTTGATATTC+CGG | + | chr5.1:2849347-2849366 | MS.gene21943:intron | 40.0% |
| !! | GTATGATTGTAGGGTTTTGG+AGG | + | chr5.1:2848503-2848522 | MS.gene21943:intron | 40.0% |
| !!! | ATGATTGTAGGGTTTTGGAG+GGG | + | chr5.1:2848505-2848524 | MS.gene21943:intron | 40.0% |
| !!! | GGATGGATTATTTTGGTGAC+TGG | + | chr5.1:2848192-2848211 | MS.gene21943:CDS | 40.0% |
| !!! | TATTCGAGGAGGGTTTTGAA+GGG | - | chr5.1:2848782-2848801 | None:intergenic | 40.0% |
| !!! | TTTTGAGTTCCCCCAAATGA+GGG | - | chr5.1:2849139-2849158 | None:intergenic | 40.0% |
| !!! | TTTTTGAGTTCCCCCAAATG+AGG | - | chr5.1:2849140-2849159 | None:intergenic | 40.0% |
| !!! | TTTTTTGGGAACGGAAGTGA+TGG | - | chr5.1:2847962-2847981 | None:intergenic | 40.0% |
| AAAAAGGAAGGAGCAAGTGG+AGG | - | chr5.1:2848918-2848937 | None:intergenic | 45.0% | |
| AAACTCCCAAGCAAAGCCTA+AGG | - | chr5.1:2849003-2849022 | None:intergenic | 45.0% | |
| AACCATGCTCCGGAATATCA+AGG | - | chr5.1:2849359-2849378 | None:intergenic | 45.0% | |
| AATCAGCGAGACGAGAGTTA+CGG | - | chr5.1:2848026-2848045 | None:intergenic | 45.0% | |
| ACAAAATCCCCCTCATTTGG+GGG | + | chr5.1:2849127-2849146 | MS.gene21943:intron | 45.0% | |
| ACAAAGCCTTAGGCTTTGCT+TGG | + | chr5.1:2848994-2849013 | MS.gene21943:intron | 45.0% | |
| CAAAGCCTTAGGCTTTGCTT+GGG | + | chr5.1:2848995-2849014 | MS.gene21943:intron | 45.0% | |
| CAATGTTGACCGACAAAAGC+TGG | + | chr5.1:2849563-2849582 | MS.gene21943:intron | 45.0% | |
| CATCTGAACCTAACAGCTTG+AGG | - | chr5.1:2849978-2849997 | None:intergenic | 45.0% | |
| CCCAAAAAAACCAAAGGTCG+CGG | + | chr5.1:2847973-2847992 | MS.gene21943:CDS | 45.0% | |
| CTCAAGCTGTTAGGTTCAGA+TGG | + | chr5.1:2849976-2849995 | MS.gene21943:intron | 45.0% | |
| GAAATCCAAAGCTTCTCCGT+CGG | - | chr5.1:2847857-2847876 | None:intergenic | 45.0% | |
| GAGTTCCCCCCAAATTATGA+GGG | + | chr5.1:2848832-2848851 | MS.gene21943:intron | 45.0% | |
| GATTGAATATGAGCGCTCTG+AGG | + | chr5.1:2850536-2850555 | MS.gene21943:CDS | 45.0% | |
| GCCATGACTGAGACATGAAA+TGG | - | chr5.1:2849919-2849938 | None:intergenic | 45.0% | |
| GCTTTGCTTGGGAGTTTAGA+GGG | + | chr5.1:2849006-2849025 | MS.gene21943:intron | 45.0% | |
| GGAGTTTAGAGGGAAGTGAA+GGG | + | chr5.1:2849016-2849035 | MS.gene21943:intron | 45.0% | |
| GTGGAGTTTGATTGAGAGGT+AGG | + | chr5.1:2849777-2849796 | MS.gene21943:intron | 45.0% | |
| TACCTTGATATTCCGGAGCA+TGG | + | chr5.1:2849354-2849373 | MS.gene21943:intron | 45.0% | |
| TAGAGGAATCGGAATCCTGA+CGG | - | chr5.1:2848002-2848021 | None:intergenic | 45.0% | |
| TCCATCAAGTCATCTTCCTC+TGG | - | chr5.1:2847883-2847902 | None:intergenic | 45.0% | |
| TCCCATGCTGGAACAATCTT+CGG | - | chr5.1:2849813-2849832 | None:intergenic | 45.0% | |
| TGAGATCAAAGCAGCGAAAG+TGG | - | chr5.1:2850234-2850253 | None:intergenic | 45.0% | |
| TGAGTTCCCCCCAAATTATG+AGG | + | chr5.1:2848831-2848850 | MS.gene21943:intron | 45.0% | |
| TGGGGATACGAACATCTTTG+AGG | - | chr5.1:2848087-2848106 | None:intergenic | 45.0% | |
| TTCGATACTCTCACTGCTGA+GGG | + | chr5.1:2848051-2848070 | MS.gene21943:CDS | 45.0% | |
| TTGAATCTTGATCGCCGTAC+TGG | + | chr5.1:2848288-2848307 | MS.gene21943:CDS | 45.0% | |
| TTTCGATACTCTCACTGCTG+AGG | + | chr5.1:2848050-2848069 | MS.gene21943:CDS | 45.0% | |
| TTTGGGAGTTTAGAGGGCAA+GGG | - | chr5.1:2848969-2848988 | None:intergenic | 45.0% | |
| ! | GATGACTTGATGGACGAAGA+AGG | + | chr5.1:2847889-2847908 | MS.gene21943:CDS | 45.0% |
| ! | GATTTGAGTTTGGGATGTGG+AGG | - | chr5.1:2847937-2847956 | None:intergenic | 45.0% |
| ! | GGACGGGTAATGGTAATCTA+AGG | + | chr5.1:2848480-2848499 | MS.gene21943:intron | 45.0% |
| ! | TACGAACATCTTTGAGGACC+AGG | - | chr5.1:2848081-2848100 | None:intergenic | 45.0% |
| ! | TATGTTGTTGGGAGGGGTTT+TGG | - | chr5.1:2848682-2848701 | None:intergenic | 45.0% |
| ! | TTTGAGTTCCCCCAAATGAG+GGG | - | chr5.1:2849138-2849157 | None:intergenic | 45.0% |
| ! | TTTGGTGACTGGTGTACATG+AGG | + | chr5.1:2848203-2848222 | MS.gene21943:CDS | 45.0% |
| !! | AGCAGTGAGAGTATCGAAAC+CGG | - | chr5.1:2848049-2848068 | None:intergenic | 45.0% |
| !! | AGTGATGGCGGATTTGAGTT+TGG | - | chr5.1:2847947-2847966 | None:intergenic | 45.0% |
| !! | GTATTCGAGGAGGGTTTTGA+AGG | - | chr5.1:2848783-2848802 | None:intergenic | 45.0% |
| !! | GTGATGGCGGATTTGAGTTT+GGG | - | chr5.1:2847946-2847965 | None:intergenic | 45.0% |
| !!! | ACCGCGACCTTTGGTTTTTT+TGG | - | chr5.1:2847977-2847996 | None:intergenic | 45.0% |
| !!! | AGGAGGGTTTTGAAGGGATT+TGG | - | chr5.1:2848776-2848795 | None:intergenic | 45.0% |
| !!! | CCGCGACCTTTGGTTTTTTT+GGG | - | chr5.1:2847976-2847995 | None:intergenic | 45.0% |
| !!! | GGGTTTTGAAGGGATTTGGA+AGG | - | chr5.1:2848772-2848791 | None:intergenic | 45.0% |
| !!! | TCGCCGTACTGGTTTTGTTA+AGG | + | chr5.1:2848299-2848318 | MS.gene21943:CDS | 45.0% |
| !!! | TGTATATAAATTTTATAAAA+TGG | + | chr5.1:2850017-2850036 | MS.gene21943:intron | 5.0% |
| ATAGAAGACATTGGGAGGGG+AGG | + | chr5.1:2849076-2849095 | MS.gene21943:intron | 50.0% | |
| ATAGAGGAGTTTGAGAGGGG+AGG | - | chr5.1:2848893-2848912 | None:intergenic | 50.0% | |
| GAGACGAGAGTTACGGTTAG+AGG | - | chr5.1:2848019-2848038 | None:intergenic | 50.0% | |
| GCCAGAGGAAGATGACTTGA+TGG | + | chr5.1:2847879-2847898 | MS.gene21943:CDS | 50.0% | |
| GCCGAAGATTGTTCCAGCAT+GGG | + | chr5.1:2849809-2849828 | MS.gene21943:intron | 50.0% | |
| GGAGCAAGTGGAGGAAATAG+AGG | - | chr5.1:2848909-2848928 | None:intergenic | 50.0% | |
| GGCTTTGCTTGGGAGTTTAG+AGG | + | chr5.1:2849005-2849024 | MS.gene21943:intron | 50.0% | |
| GGGAGTTTAGAGGGAAGTGA+AGG | + | chr5.1:2849015-2849034 | MS.gene21943:intron | 50.0% | |
| GTTGATTGGGCTTTCAGCAG+TGG | + | chr5.1:2850618-2850637 | MS.gene21943:CDS | 50.0% | |
| GTTTGGGAGTTTAGAGGGCA+AGG | - | chr5.1:2848970-2848989 | None:intergenic | 50.0% | |
| TAGAAGACATTGGGAGGGGA+GGG | + | chr5.1:2849077-2849096 | MS.gene21943:intron | 50.0% | |
| TAGAGGAGTTTGAGAGGGGA+GGG | - | chr5.1:2848892-2848911 | None:intergenic | 50.0% | |
| TCCAGCATGGGATCGAACTT+GGG | + | chr5.1:2849821-2849840 | MS.gene21943:intron | 50.0% | |
| TTCCAGCATGGGATCGAACT+TGG | + | chr5.1:2849820-2849839 | MS.gene21943:intron | 50.0% | |
| TTGAGTTCCCCCAAATGAGG+GGG | - | chr5.1:2849137-2849156 | None:intergenic | 50.0% | |
| TTTGGGAACGGAAGTGATGG+CGG | - | chr5.1:2847959-2847978 | None:intergenic | 50.0% | |
| ! | GCGGATTTGAGTTTGGGATG+TGG | - | chr5.1:2847940-2847959 | None:intergenic | 50.0% |
| !! | AACTCTCGTCTCGCTGATTC+CGG | + | chr5.1:2848027-2848046 | MS.gene21943:CDS | 50.0% |
| !! | AGCTTTGGATTTCGAGCCAG+AGG | + | chr5.1:2847864-2847883 | MS.gene21943:CDS | 50.0% |
| !! | GTTAACCTTCTGGTTTCCCG+AGG | + | chr5.1:2849326-2849345 | MS.gene21943:intron | 50.0% |
| !!! | ATTGTAGGGTTTTGGAGGGG+AGG | + | chr5.1:2848508-2848527 | MS.gene21943:intron | 50.0% |
| !!! | TTGTAGGGTTTTGGAGGGGA+GGG | + | chr5.1:2848509-2848528 | MS.gene21943:intron | 50.0% |
| ACCCAAGTTCGATCCCATGC+TGG | - | chr5.1:2849825-2849844 | None:intergenic | 55.0% | |
| AGTTTGAGAGGGGAGGGCTT+TGG | - | chr5.1:2848886-2848905 | None:intergenic | 55.0% | |
| ATCCAAAGCTTCTCCGTCGG+CGG | - | chr5.1:2847854-2847873 | None:intergenic | 55.0% | |
| CCTTTCCTCGGGAAACCAGA+AGG | - | chr5.1:2849334-2849353 | None:intergenic | 55.0% | |
| GATACTCTCACTGCTGAGGG+TGG | + | chr5.1:2848054-2848073 | MS.gene21943:CDS | 55.0% | |
| GGAGTTTAGAGGGCAAGGGA+GGG | - | chr5.1:2848965-2848984 | None:intergenic | 55.0% | |
| GGCCGAAGATTGTTCCAGCA+TGG | + | chr5.1:2849808-2849827 | MS.gene21943:intron | 55.0% | |
| GGGATGTGGAGGAGAAGCTT+CGG | - | chr5.1:2847926-2847945 | None:intergenic | 55.0% | |
| GTTTGAGAGGGGAGGGCTTT+GGG | - | chr5.1:2848885-2848904 | None:intergenic | 55.0% | |
| TTTGAGAGGGGAGGGCTTTG+GGG | - | chr5.1:2848884-2848903 | None:intergenic | 55.0% | |
| ! | ATACTGCAGGGAGTGCAGTG+AGG | - | chr5.1:2850043-2850062 | None:intergenic | 55.0% |
| ! | ATTGGGAGGGGAGGGCTTTT+GGG | + | chr5.1:2849085-2849104 | MS.gene21943:intron | 55.0% |
| ! | TAGAGGGCAAGGGAGGGTTT+TGG | - | chr5.1:2848959-2848978 | None:intergenic | 55.0% |
| !! | ATGAGCGCTCTGAGGAAGCT+CGG | + | chr5.1:2850544-2850563 | MS.gene21943:CDS | 55.0% |
| !! | CCTTCTGGTTTCCCGAGGAA+AGG | + | chr5.1:2849331-2849350 | MS.gene21943:intron | 55.0% |
| !! | GTTGTTGGGAGGGGTTTTGG+AGG | - | chr5.1:2848679-2848698 | None:intergenic | 55.0% |
| !!! | TGTAGGGTTTTGGAGGGGAG+GGG | + | chr5.1:2848510-2848529 | MS.gene21943:intron | 55.0% |
| CAAAGGTCGCGGTTTCCGTC+AGG | + | chr5.1:2847984-2848003 | MS.gene21943:CDS | 60.0% | |
| CTGACGGAAACCGCGACCTT+TGG | - | chr5.1:2847986-2848005 | None:intergenic | 60.0% | |
| GGGAGTTTAGAGGGCAAGGG+AGG | - | chr5.1:2848966-2848985 | None:intergenic | 60.0% | |
| ! | CATTGGGAGGGGAGGGCTTT+TGG | + | chr5.1:2849084-2849103 | MS.gene21943:intron | 60.0% |
| ! | TTGAGAGGGGAGGGCTTTGG+GGG | - | chr5.1:2848883-2848902 | None:intergenic | 60.0% |
| ! | TTGGGAGGGGAGGGCTTTTG+GGG | + | chr5.1:2849086-2849105 | MS.gene21943:intron | 60.0% |
| !!! | GTAGGGTTTTGGAGGGGAGG+GGG | + | chr5.1:2848511-2848530 | MS.gene21943:intron | 60.0% |
| CTCACTGCTGAGGGTGGTCC+TGG | + | chr5.1:2848060-2848079 | MS.gene21943:CDS | 65.0% | |
| !! | ATGCAAGGAAGCGCCGCCGA+CGG | + | chr5.1:2847838-2847857 | MS.gene21943:CDS | 65.0% |
| !! | TGAGAGGGGAGGGCTTTGGG+GGG | - | chr5.1:2848882-2848901 | None:intergenic | 65.0% |
| !! | TTTTGGAGGGGAGGGGGTGG+AGG | + | chr5.1:2848517-2848536 | MS.gene21943:intron | 65.0% |
| CGCCGCCGACGGAGAAGCTT+TGG | + | chr5.1:2847849-2847868 | MS.gene21943:CDS | 70.0% | |
| !!! | GGGTTTTGGAGGGGAGGGGG+TGG | + | chr5.1:2848514-2848533 | MS.gene21943:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2847838 | 2850674 | 2847838 | ID=MS.gene21943 |
| chr5.1 | mRNA | 2847838 | 2850674 | 2847838 | ID=MS.gene21943.t1;Parent=MS.gene21943 |
| chr5.1 | exon | 2847838 | 2848093 | 2847838 | ID=MS.gene21943.t1.exon1;Parent=MS.gene21943.t1 |
| chr5.1 | CDS | 2847838 | 2848093 | 2847838 | ID=cds.MS.gene21943.t1;Parent=MS.gene21943.t1 |
| chr5.1 | exon | 2848184 | 2848320 | 2848184 | ID=MS.gene21943.t1.exon2;Parent=MS.gene21943.t1 |
| chr5.1 | CDS | 2848184 | 2848320 | 2848184 | ID=cds.MS.gene21943.t1;Parent=MS.gene21943.t1 |
| chr5.1 | exon | 2850525 | 2850674 | 2850525 | ID=MS.gene21943.t1.exon3;Parent=MS.gene21943.t1 |
| chr5.1 | CDS | 2850525 | 2850674 | 2850525 | ID=cds.MS.gene21943.t1;Parent=MS.gene21943.t1 |
| Gene Sequence |
| Protein sequence |
