AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003999.t1 MTR_4g064740 91.965 921 41 6 1 898 1 911 0.0 1365
MS.gene003999.t1 MTR_4g064740 90.445 921 41 6 1 898 1 897 0.0 1330
MS.gene003999.t1 MTR_4g064740 86.478 917 33 6 1 898 1 845 0.0 1238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003999.t1 AT2G29210 58.893 253 94 3 1 252 1 244 2.92e-84 289
MS.gene003999.t1 AT2G29210 58.893 253 94 3 1 252 1 244 3.35e-84 289

Find 235 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGTCTGTTGGCTTCTT+TGG 0.135375 4.3:+39273034 None:intergenic
TATGGTCTGTTGGCTTCTTT+GGG 0.166124 4.3:+39273035 None:intergenic
CTCATCCTCGTGATGAAATT+TGG 0.210053 4.3:+39272743 None:intergenic
GGATGTCATGGCTAGGTTTA+TGG 0.238409 4.3:+39273017 None:intergenic
ACTTTGAAGTCCAGGGATTC+AGG 0.246504 4.3:-39275907 MS.gene003999:CDS
ACTATCATACCTTCGCATTA+TGG 0.249458 4.3:+39274070 None:intergenic
GGGAAGAGAGACGGCGAAAA+AGG 0.256769 4.3:-39272109 MS.gene003999:CDS
AAGTCCTGTGCAGTCTTCTA+TGG 0.258541 4.3:-39273868 MS.gene003999:CDS
AGCTCAATCTCAAGCTTCTT+TGG 0.264195 4.3:+39271972 None:intergenic
TCTGCTCCTTCACTCGTCTC+TGG 0.265737 4.3:+39272995 None:intergenic
CATGCTCTTCTTTGCTTTGA+GGG 0.276810 4.3:+39271929 None:intergenic
TCATGAGAAGGAGACCTCTT+AGG 0.281842 4.3:+39273966 None:intergenic
GGAATTCGAAAATGATTTAC+TGG 0.282450 4.3:+39274914 None:intergenic
CAGCATAGATCACCTGTTTC+GGG 0.285960 4.3:-39274014 MS.gene003999:CDS
GAAATTCAAATACAAATTAC+TGG 0.289351 4.3:-39276435 MS.gene003999:CDS
TGGTGTTCCTCAGCAGTTCT+TGG 0.291429 4.3:-39276337 MS.gene003999:CDS
GAACCTATTCGCTTACTAAC+TGG 0.299039 4.3:+39272771 None:intergenic
CAGAAGAAGCAAATTATTCT+AGG 0.302672 4.3:-39272976 MS.gene003999:intron
CTTGAGTGCCTTCTGATTTG+TGG 0.303451 4.3:+39272372 None:intergenic
AGATGACTAGCTGCCCTTTC+AGG 0.304384 4.3:+39272714 None:intergenic
ACAGAAGTTTGCACCGGAAT+TGG 0.310132 4.3:-39277306 MS.gene003999:CDS
CTATCATACCTTCGCATTAT+GGG 0.312064 4.3:+39274071 None:intergenic
TAACTTCATACATGGTCTTC+TGG 0.314039 4.3:-39276843 MS.gene003999:CDS
AAGACTGCACAGGACTTCTT+TGG 0.314046 4.3:+39273874 None:intergenic
AATACAAATTACTGGATTCA+TGG 0.319893 4.3:-39276427 MS.gene003999:CDS
AGGATAGGAGAAAGCATAAA+AGG 0.322404 4.3:-39272262 MS.gene003999:CDS
AGAGGCCAAGAGGAGGAAAA+AGG 0.328053 4.3:-39272174 MS.gene003999:CDS
TGAGATTGAGCTGCGTAATA+AGG 0.334168 4.3:-39271961 MS.gene003999:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.335851 4.3:+39274362 None:intergenic
GATCGGATTGGAGACTTATC+TGG 0.337789 4.3:+39273273 None:intergenic
AAGAAAGTGGCAAGCATAGA+AGG 0.346706 4.3:-39272292 MS.gene003999:CDS
TTTGGCAGTGATAAATCTTC+TGG 0.349282 4.3:-39272548 MS.gene003999:intron
GGACATGACAAAGGTGAATA+TGG 0.355949 4.3:-39276933 MS.gene003999:CDS
GCAGCATAGATCACCTGTTT+CGG 0.356772 4.3:-39274015 MS.gene003999:CDS
TCATGCTCTTCTTTGCTTTG+AGG 0.359216 4.3:+39271928 None:intergenic
TACTAGGAGATCTCTGTTGC+AGG 0.361598 4.3:+39274171 None:intergenic
AGAAAGGCCAGGATATAAAA+TGG 0.364329 4.3:-39272650 MS.gene003999:intron
GATTTACTGGTTGCCCTTGC+AGG 0.368060 4.3:+39274927 None:intergenic
ACAGGACTTCTTTGGAGTCT+TGG 0.369222 4.3:+39273882 None:intergenic
CAAACCAGATGCTCCAATTC+CGG 0.371274 4.3:+39277293 None:intergenic
TGCACCGGAATTGGAGCATC+TGG 0.375069 4.3:-39277297 MS.gene003999:intron
TGGCTAGGTTTATGGTCTGT+TGG 0.380139 4.3:+39273025 None:intergenic
ATCAACCCTCTAGTCCTTTG+CGG 0.382879 4.3:-39273359 MS.gene003999:CDS
GAAAAGTGACCGAGCTTCTT+GGG 0.391597 4.3:-39276886 MS.gene003999:CDS
AAGCTCTTTCATGAACTTAC+CGG 0.392718 4.3:+39276395 None:intergenic
GAGGGTGACCTTCGTCTAAT+AGG 0.395608 4.3:+39274197 None:intergenic
TAAGGAGAGTAAAGATATCA+TGG 0.397290 4.3:-39276132 MS.gene003999:CDS
GGTGATCTACGTCGTCGTAT+AGG 0.402707 4.3:+39274251 None:intergenic
CATGAGAAGGAGACCTCTTA+GGG 0.404136 4.3:+39273967 None:intergenic
GTGATCTGCGTCGTCGTACT+GGG 0.406823 4.3:+39274363 None:intergenic
ATGGAACGCCCTCGACCCTT+TGG 0.410183 4.3:+39274644 None:intergenic
AGAAAAGTGACCGAGCTTCT+TGG 0.412238 4.3:-39276887 MS.gene003999:CDS
GGTGATCTGCGTTGTCGTAC+TGG 0.413128 4.3:+39274332 None:intergenic
CTGCGTCTCCGTGCAGGATA+AGG 0.413723 4.3:+39274311 None:intergenic
CTGTATCCTTTCAGAAGAAA+TGG 0.415338 4.3:+39274625 None:intergenic
GAGGGCGATCTCCGTCTAAC+AGG 0.415650 4.3:+39274443 None:intergenic
AGATCTCTGTTGCAGGGGTG+AGG 0.421202 4.3:+39274178 None:intergenic
GGAAGAGAGGCTGAAGAAAC+TGG 0.422262 4.3:-39276111 MS.gene003999:intron
CTGCTCCTTCACTCGTCTCT+GGG 0.422657 4.3:+39272996 None:intergenic
GGGACTCAAGCTTCCTTCAA+TGG 0.423755 4.3:+39273057 None:intergenic
GACCTCCGTCCACGGCTTAG+TGG 0.424037 4.3:+39274113 None:intergenic
GGATTCAGGGCACTACATTC+AGG 0.425295 4.3:-39275893 MS.gene003999:CDS
CGAATTCCCGAAGTTATTCA+AGG 0.427764 4.3:-39274899 MS.gene003999:intron
GAAGGCACTCAAGATTTAGT+TGG 0.429516 4.3:-39272362 MS.gene003999:CDS
GTGGTGCTGATCACTACTTT+TGG 0.430067 4.3:+39272391 None:intergenic
GTAAGTTCATGAAAGAGCTT+TGG 0.430325 4.3:-39276392 MS.gene003999:CDS
AGAGAGAAATTGACCATTGA+AGG 0.434146 4.3:-39273070 MS.gene003999:CDS
GGTGACCTGCGCCGCATACT+AGG 0.436692 4.3:+39274155 None:intergenic
GGTGTTCTGCGTCGACGAAA+TGG 0.439002 4.3:+39274470 None:intergenic
CAGATCCAACTTTGAAGTCC+AGG 0.450428 4.3:-39275915 MS.gene003999:CDS
TTCTCTCTTGTTTGCCTCAG+AGG 0.451538 4.3:+39273085 None:intergenic
TCTCTCTTGTTTGCCTCAGA+GGG 0.451933 4.3:+39273086 None:intergenic
CTAGAGGGTTGATAAACTTC+CGG 0.454350 4.3:+39273369 None:intergenic
TCAAGCTTCTTTGGATCGTA+TGG 0.456459 4.3:+39271981 None:intergenic
CTTTGAAGTCCAGGGATTCA+GGG 0.458452 4.3:-39275906 MS.gene003999:CDS
GGTGATCTGCGTCGTCGTAC+TGG 0.460733 4.3:+39274392 None:intergenic
CTGCAAGTGCCTCCCCTAAG+AGG 0.462910 4.3:-39273980 MS.gene003999:CDS
AATGTAGTGCCCTGAATCCC+TGG 0.465080 4.3:+39275897 None:intergenic
GGCAAGGGAGGCGAGTCTCC+TGG 0.466974 4.3:-39272527 MS.gene003999:CDS
GAATCCCTGGACTTCAAAGT+TGG 0.474942 4.3:+39275910 None:intergenic
AGCGGACCTTGAATAACTTC+GGG 0.477075 4.3:+39274893 None:intergenic
ATAGGAGGCCATCTTATTCA+AGG 0.477162 4.3:-39274544 MS.gene003999:CDS
TAATGATGCAGAAAGTGAAC+GGG 0.480070 4.3:-39276461 MS.gene003999:intron
GATCTTCTCCTTGAATAAGA+TGG 0.481430 4.3:+39274536 None:intergenic
GATTCTGTTTCTGAAGAAAG+TGG 0.489143 4.3:-39272305 MS.gene003999:CDS
ATATGGACGTAATGAGGCCT+TGG 0.489542 4.3:-39276916 MS.gene003999:CDS
CTCCTATGAGGAGATCTTTG+TGG 0.490568 4.3:+39274560 None:intergenic
AAGCGGACCTTGAATAACTT+CGG 0.491825 4.3:+39274892 None:intergenic
GGTGATCTTCGTCGTCGCAC+TGG 0.494165 4.3:+39274419 None:intergenic
GGCGTTCCATTTCTTCTGAA+AGG 0.495811 4.3:-39274631 MS.gene003999:CDS
TTGCTTGTGGTGATATTGAT+CGG 0.498595 4.3:+39273256 None:intergenic
AACCTATTCGCTTACTAACT+GGG 0.499232 4.3:+39272772 None:intergenic
GGAGGAGAAGCATCGAAAGC+GGG 0.501336 4.3:-39272129 MS.gene003999:CDS
GGAGATCTGCGTCTCCGTGC+AGG 0.505031 4.3:+39274305 None:intergenic
GGTCTCCTTCTCATGATGAA+TGG 0.507530 4.3:-39273959 MS.gene003999:CDS
CACTCGTCTCTGGGATGTCA+TGG 0.508313 4.3:+39273005 None:intergenic
TGAAAGGGCAGCTAGTCATC+TGG 0.509913 4.3:-39272712 MS.gene003999:CDS
CTTCGTCGTCGCACTGGAGA+GGG 0.511910 4.3:+39274425 None:intergenic
ATGGTTCTTCATCATCACTT+TGG 0.512444 4.3:+39272000 None:intergenic
GGTATTCGACGCATCGGTGA+AGG 0.512792 4.3:+39274134 None:intergenic
CTGCGTCTTCGCACAGGAGA+GGG 0.514178 4.3:+39274284 None:intergenic
TCATCGTCTGAAATATAGCC+TGG 0.514329 4.3:+39272047 None:intergenic
GGTGAAGTTCTCCTTCTGAC+TGG 0.515094 4.3:+39273903 None:intergenic
GTGTTATGGTGGTACCGATA+AGG 0.515482 4.3:+39275028 None:intergenic
CTGCGTCGTCGTACTGGGGA+AGG 0.515506 4.3:+39274368 None:intergenic
AGATCCAACTTTGAAGTCCA+GGG 0.516379 4.3:-39275914 MS.gene003999:CDS
GAATAAGATGGCCTCCTATG+AGG 0.522443 4.3:+39274548 None:intergenic
CTTTGTGGTGAACGTCTTCG+AGG 0.524203 4.3:+39274575 None:intergenic
TCTCGCCGTCACAACATGTC+AGG 0.524525 4.3:-39277711 None:intergenic
GATCTATGCTGCAAAGGAGA+TGG 0.525694 4.3:+39274026 None:intergenic
ATGGTGTTAGAGCAAGGAAC+AGG 0.526411 4.3:-39275849 MS.gene003999:intron
TGCCTCAGAGGGATTTCATG+TGG 0.527285 4.3:+39273097 None:intergenic
AATAATGAAAGGAATAAGAA+AGG 0.530279 4.3:-39272666 MS.gene003999:CDS
TGGTCTGTTGGCTTCTTTGG+GGG 0.531174 4.3:+39273037 None:intergenic
AATTCAGAGGAAGAAAGATA+AGG 0.532772 4.3:-39276150 MS.gene003999:CDS
TATCATACCTTCGCATTATG+GGG 0.534876 4.3:+39274072 None:intergenic
GAAGAAGAAGCTGCGAAAGG+AGG 0.535503 4.3:-39272147 MS.gene003999:CDS
GATCTCTGTTGCAGGGGTGA+GGG 0.537291 4.3:+39274179 None:intergenic
CACCACAAAGATCTCCTCAT+AGG 0.537344 4.3:-39274562 MS.gene003999:CDS
TGCAGATCTCCAAAGGGTCG+AGG 0.538902 4.3:-39274653 MS.gene003999:intron
GTCTTCAAACCCAAGAAGCT+CGG 0.539593 4.3:+39276877 None:intergenic
TGTGGTGATATTGATCGGAT+TGG 0.543477 4.3:+39273261 None:intergenic
GATCTCCTAGTATGCGGCGC+AGG 0.544212 4.3:-39274160 MS.gene003999:CDS
TCCCCAGTTAGTAAGCGAAT+AGG 0.546444 4.3:-39272774 MS.gene003999:CDS
TTGACAGAGGCTCACCTGCA+AGG 0.546463 4.3:-39274941 MS.gene003999:intron
TTGAAAACTGCAGGTGAATG+TGG 0.546556 4.3:+39275055 None:intergenic
ACTGGTGACTTCTGTTGACC+AGG 0.547027 4.3:+39272509 None:intergenic
TGACAGAGGCTCACCTGCAA+GGG 0.547216 4.3:-39274940 MS.gene003999:intron
TAAGGTGAATTGAAAACTGC+AGG 0.548365 4.3:+39275046 None:intergenic
AGTCCTGTGCAGTCTTCTAT+GGG 0.549704 4.3:-39273867 MS.gene003999:CDS
ATCGAAAGCGGGAAGAGAGA+CGG 0.550323 4.3:-39272118 MS.gene003999:CDS
ATGGTCTGTTGGCTTCTTTG+GGG 0.552334 4.3:+39273036 None:intergenic
GTTCTCCTTCTGACTGGAGA+TGG 0.552568 4.3:+39273909 None:intergenic
GGTGATCTGCGTCTTCGCAC+AGG 0.555011 4.3:+39274278 None:intergenic
AGTCTTCTATGGGAAGAGTC+AGG 0.555275 4.3:-39273857 MS.gene003999:intron
ATAGAAGGGATGGAAAGGAT+AGG 0.555910 4.3:-39272277 MS.gene003999:CDS
CTGCGTCGTCGTACTGGAGA+GGG 0.556617 4.3:+39274398 None:intergenic
CTGAAAATGAAGAGTAAACC+AGG 0.557310 4.3:-39272065 MS.gene003999:CDS
TAGTATATGCAGATCTCCAA+AGG 0.559702 4.3:-39274660 MS.gene003999:intron
CAGTGATAAATCTTCTGGCA+AGG 0.559732 4.3:-39272543 MS.gene003999:CDS
GGTGATCTACGTCGGTGCAT+TGG 0.560342 4.3:+39274224 None:intergenic
ATAGTAGAACTCCACGGCGC+AGG 0.561138 4.3:-39274052 MS.gene003999:CDS
CTGCGTTGTCGTACTGGAGA+AGG 0.562594 4.3:+39274338 None:intergenic
CTACGTCGGTGCATTGGAGA+AGG 0.562699 4.3:+39274230 None:intergenic
GAATGCATTCCACGTCGGAT+AGG 0.562702 4.3:+39274494 None:intergenic
AGGAGGAGAAGCATCGAAAG+CGG 0.568565 4.3:-39272130 MS.gene003999:CDS
ACTAGGAGATCTCTGTTGCA+GGG 0.573359 4.3:+39274172 None:intergenic
AGGTGAATATGGACGTAATG+AGG 0.574170 4.3:-39276922 MS.gene003999:CDS
GTAATGATGCAGAAAGTGAA+CGG 0.574593 4.3:-39276462 MS.gene003999:intron
TGAAAGGAATAAGAAAGGCC+AGG 0.574897 4.3:-39272661 MS.gene003999:CDS
CGTCGTCGTACTGGGGAAGG+TGG 0.575213 4.3:+39274371 None:intergenic
CTGGTCTTACTTCTTGCTTG+TGG 0.575834 4.3:+39273243 None:intergenic
CGATGAGGAAGCTGAACGAA+GGG 0.577929 4.3:-39272030 MS.gene003999:CDS
AGGATGGAAAACAAACTGAC+AGG 0.578708 4.3:-39275873 MS.gene003999:CDS
GTGCTTATTAACTTCATACA+TGG 0.580754 4.3:-39276851 MS.gene003999:CDS
GACCTTCGTCTAATAGGTGA+TGG 0.581463 4.3:+39274203 None:intergenic
AGTGGCAAGCATAGAAGGGA+TGG 0.582926 4.3:-39272287 MS.gene003999:CDS
TGGATTAGGCTGAAAGCGAT+AGG 0.583442 4.3:-39276184 MS.gene003999:intron
TCTTCGTCGTCGCACTGGAG+AGG 0.583498 4.3:+39274424 None:intergenic
ATGATTCTGAGTTAGAAGAC+AGG 0.586623 4.3:-39272199 MS.gene003999:CDS
GTAAAGATATCATGGAAGAG+AGG 0.588000 4.3:-39276124 MS.gene003999:CDS
ACAGAAGTCACCAGTGAACA+AGG 0.589806 4.3:-39272501 MS.gene003999:CDS
ACATGGTCTTCTGGAAGCGA+AGG 0.592482 4.3:-39276834 MS.gene003999:intron
AGCATTATGATAATAATGAA+AGG 0.592936 4.3:-39272677 MS.gene003999:CDS
GGAGATGGAGATACACGTGC+AGG 0.593789 4.3:+39273924 None:intergenic
CTACGTCGTCGTATAGGAGA+AGG 0.596511 4.3:+39274257 None:intergenic
GTCTCTGGGATGTCATGGCT+AGG 0.596624 4.3:+39273010 None:intergenic
GACATCCCAGAGACGAGTGA+AGG 0.597887 4.3:-39273001 MS.gene003999:CDS
GCAGATCTCCAAAGGGTCGA+GGG 0.599101 4.3:-39274652 MS.gene003999:intron
CACAAAGATCTCCTCATAGG+AGG 0.599164 4.3:-39274559 MS.gene003999:CDS
TGAGTTAGAAGACAGGAAAG+AGG 0.599489 4.3:-39272192 MS.gene003999:CDS
TACAGACCGCAAAGGACTAG+AGG 0.599929 4.3:+39273353 None:intergenic
AGTGATAAATCTTCTGGCAA+GGG 0.600108 4.3:-39272542 MS.gene003999:CDS
GAGGAAGCTGAACGAAGGGA+TGG 0.600904 4.3:-39272026 MS.gene003999:CDS
GAACACCCTCTCCTGTTAGA+CGG 0.602336 4.3:-39274454 MS.gene003999:CDS
AGTATATGCAGATCTCCAAA+GGG 0.604439 4.3:-39274659 MS.gene003999:intron
TAAGTCACAGAAGTTTGCAC+CGG 0.605355 4.3:-39277312 MS.gene003999:CDS
GAGAGCTTGACCTCCGTCCA+CGG 0.605834 4.3:+39274105 None:intergenic
GGAGAAGAAGAAGCTGCGAA+AGG 0.606850 4.3:-39272150 MS.gene003999:CDS
CAAGCATAGAAGGGATGGAA+AGG 0.610084 4.3:-39272282 MS.gene003999:CDS
ACAGGTGATCTATGCTGCAA+AGG 0.611103 4.3:+39274020 None:intergenic
CTAGGAGATCTCTGTTGCAG+GGG 0.611845 4.3:+39274173 None:intergenic
ACGATGAGGAAGCTGAACGA+AGG 0.612999 4.3:-39272031 MS.gene003999:CDS
ATCTGCCAAATTTCATCACG+AGG 0.613155 4.3:-39272748 MS.gene003999:CDS
GAACTCCATTCATCATGAGA+AGG 0.615832 4.3:+39273954 None:intergenic
ATCATACCTTCGCATTATGG+GGG 0.620361 4.3:+39274073 None:intergenic
TATCTCCATCTCCAGTCAGA+AGG 0.621299 4.3:-39273914 MS.gene003999:CDS
GATAAATCTTCTGGCAAGGG+AGG 0.621601 4.3:-39272539 MS.gene003999:CDS
GGATAACAAGTGAAATTCAG+AGG 0.624286 4.3:-39276163 MS.gene003999:CDS
CGATCTCCGTCTAACAGGAG+AGG 0.624447 4.3:+39274448 None:intergenic
GGAAAACAAACTGACAGGAA+TGG 0.624597 4.3:-39275868 MS.gene003999:CDS
TCTGCGTCGTCGTACTGGAG+AGG 0.626382 4.3:+39274397 None:intergenic
TCAGGGCACTACATTCAGGA+TGG 0.627377 4.3:-39275889 MS.gene003999:CDS
TTAGCATCCAAGAACTGCTG+AGG 0.629191 4.3:+39276330 None:intergenic
GGACGGAGGATTAGATGCGA+AGG 0.629390 4.3:-39275953 MS.gene003999:CDS
AGAAAGTGGCAAGCATAGAA+GGG 0.631893 4.3:-39272291 MS.gene003999:CDS
GAACTGCTGAGGAACACCAC+TGG 0.634456 4.3:+39276341 None:intergenic
ACAGGAATGGTGTTAGAGCA+AGG 0.635476 4.3:-39275855 MS.gene003999:CDS
CGCCGTCACAACATGTCAGG+CGG 0.637769 4.3:-39277708 None:intergenic
ACAGGAAAGAGGCCAAGAGG+AGG 0.638857 4.3:-39272181 MS.gene003999:CDS
AAGACAGGAAAGAGGCCAAG+AGG 0.640404 4.3:-39272184 MS.gene003999:CDS
GATCAGCACCACAAATCAGA+AGG 0.640722 4.3:-39272380 MS.gene003999:CDS
GATCTCCGTCTAACAGGAGA+GGG 0.642163 4.3:+39274449 None:intergenic
CATCTGCGGATCAAGACACT+CGG 0.642784 4.3:-39277361 MS.gene003999:CDS
TCTGCGTCTTCGCACAGGAG+AGG 0.644756 4.3:+39274283 None:intergenic
GATTGGAGACTTATCTGGTG+TGG 0.644922 4.3:+39273278 None:intergenic
GAATACCACTAAGCCGTGGA+CGG 0.647906 4.3:-39274118 MS.gene003999:CDS
CGTTGTCGTACTGGAGAAGG+TGG 0.649650 4.3:+39274341 None:intergenic
AGGCTATATTTCAGACGATG+AGG 0.652893 4.3:-39272045 MS.gene003999:CDS
TACCACTAAGCCGTGGACGG+AGG 0.653994 4.3:-39274115 MS.gene003999:CDS
TGATCTGCGTCGTCGTACTG+GGG 0.659410 4.3:+39274364 None:intergenic
CTTAGTGGTATTCGACGCAT+CGG 0.660302 4.3:+39274128 None:intergenic
GCAGATCACCTTATCCTGCA+CGG 0.663082 4.3:-39274319 MS.gene003999:CDS
CTTCCCATAGAAGACTGCAC+AGG 0.663283 4.3:+39273864 None:intergenic
AACAGAGATCTCCTAGTATG+CGG 0.664203 4.3:-39274166 MS.gene003999:CDS
GGATACAGCGGTCTTCACGA+CGG 0.664510 4.3:-39274610 MS.gene003999:CDS
ACCTATTCGCTTACTAACTG+GGG 0.667629 4.3:+39272773 None:intergenic
AGAAGGAGACCTCTTAGGGG+AGG 0.669972 4.3:+39273971 None:intergenic
ACAGACCGCAAAGGACTAGA+GGG 0.670912 4.3:+39273354 None:intergenic
ATGGAGAATGCATTCCACGT+CGG 0.671570 4.3:+39274489 None:intergenic
GGAGATGGAGACCTGCGCCG+TGG 0.671901 4.3:+39274041 None:intergenic
CACCATCACCTATTAGACGA+AGG 0.685718 4.3:-39274205 MS.gene003999:CDS
TCTGCAGCATAAGAATCGCG+AGG 0.686337 4.3:+39272458 None:intergenic
TAGGTGATGGTGATCTACGT+CGG 0.690454 4.3:+39274216 None:intergenic
GATGCAGAAAGTGAACGGGA+AGG 0.691146 4.3:-39276457 MS.gene003999:intron
CGTCGAATACCACTAAGCCG+TGG 0.697725 4.3:-39274122 MS.gene003999:CDS
TTGGATGTAGGGTACATCTG+CGG 0.702200 4.3:-39277375 MS.gene003999:intron
ATGAGAAGGAGACCTCTTAG+GGG 0.707295 4.3:+39273968 None:intergenic
TTTGTAGGTGGACATGACAA+AGG 0.709049 4.3:-39276942 MS.gene003999:intron
CTCAAACTACTGTAGGACGG+AGG 0.719978 4.3:-39275967 MS.gene003999:intron
TCATCTTCTCCTATCCGACG+TGG 0.725643 4.3:-39274503 MS.gene003999:CDS
TCTCTCTGTACAGACCGCAA+AGG 0.728007 4.3:+39273345 None:intergenic
TTTCTTCTGAAAGGATACAG+CGG 0.730863 4.3:-39274622 MS.gene003999:CDS
GTCCACATGAAATCCCTCTG+AGG 0.742228 4.3:-39273099 MS.gene003999:CDS
GGTATGATAGTAGAACTCCA+CGG 0.784949 4.3:-39274058 MS.gene003999:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTACTCATTAATAA+AGG + chr4.3:39274889-39274908 None:intergenic 10.0%
!!! ATTTGTTGATTTTTTTTATA+GGG - chr4.3:39272368-39272387 MS.gene003999:CDS 10.0%
!! AAATCTAAATTAATCAATCA+AGG + chr4.3:39272352-39272371 None:intergenic 15.0%
!! ATATAAAATGGTAATATGAT+TGG - chr4.3:39276978-39276997 MS.gene003999:intron 15.0%
!! GAATACAAAAATTTAAAAAC+AGG + chr4.3:39272166-39272185 None:intergenic 15.0%
!! TACAAAATATCAAAAAACAA+TGG + chr4.3:39274341-39274360 None:intergenic 15.0%
!!! AAATATAACATGTTGAATTT+TGG - chr4.3:39272222-39272241 MS.gene003999:CDS 15.0%
!!! AACAAACCTTATTTAAAAAA+TGG + chr4.3:39276163-39276182 None:intergenic 15.0%
!!! ACAAACCTTATTTAAAAAAT+GGG + chr4.3:39276162-39276181 None:intergenic 15.0%
!!! ATTTTATTCAATTTTGAAGT+AGG - chr4.3:39275894-39275913 MS.gene003999:CDS 15.0%
!!! GATTTGTTGATTTTTTTTAT+AGG - chr4.3:39272367-39272386 MS.gene003999:CDS 15.0%
!!! TAGTTTATGCATATTTATTT+TGG - chr4.3:39276478-39276497 MS.gene003999:intron 15.0%
!!! TTATTGTTTTTGAACTATTT+TGG - chr4.3:39272809-39272828 MS.gene003999:CDS 15.0%
!!! TTGCACATTTAATTTTTATT+TGG - chr4.3:39274907-39274926 MS.gene003999:CDS 15.0%
!!! TTTCTATTTCATTTTCTTAT+TGG - chr4.3:39273838-39273857 MS.gene003999:intron 15.0%
!!! TTTGCAGAATAATTTTTTAA+GGG - chr4.3:39275983-39276002 MS.gene003999:intron 15.0%
!!! TTTTGCAGAATAATTTTTTA+AGG - chr4.3:39275982-39276001 MS.gene003999:intron 15.0%
!! AAGCAAATGAATAATTGAAA+TGG + chr4.3:39271972-39271991 None:intergenic 20.0%
!! AATAACCAGAATTACTATTA+TGG - chr4.3:39275927-39275946 MS.gene003999:CDS 20.0%
!! AATAATGAAAGGAATAAGAA+AGG - chr4.3:39276950-39276969 MS.gene003999:intron 20.0%
!! AATGAAATAGAAACAAACAT+CGG + chr4.3:39273831-39273850 None:intergenic 20.0%
!! AGCATTATGATAATAATGAA+AGG - chr4.3:39276939-39276958 MS.gene003999:intron 20.0%
!! ATGATTAAAAAAGAAGGAAT+CGG + chr4.3:39273802-39273821 None:intergenic 20.0%
!! CACATAATGATTAAAAAAGA+AGG + chr4.3:39273808-39273827 None:intergenic 20.0%
!! GAAATTCAAATACAAATTAC+TGG - chr4.3:39273181-39273200 MS.gene003999:intron 20.0%
!! GTAAAAAACTTTAATCAGAA+AGG + chr4.3:39273406-39273425 None:intergenic 20.0%
!! TATGCATACATAATATATAC+AGG - chr4.3:39274005-39274024 MS.gene003999:CDS 20.0%
!!! AAACTCTATTATTTTGTTGT+TGG - chr4.3:39274417-39274436 MS.gene003999:CDS 20.0%
!!! AACTCTATTATTTTGTTGTT+GGG - chr4.3:39274418-39274437 MS.gene003999:CDS 20.0%
!!! AACTTGTTATAGTGATTTTT+TGG - chr4.3:39272140-39272159 MS.gene003999:CDS 20.0%
!!! AAGTTTGTTTGATTTTTCTT+TGG - chr4.3:39275811-39275830 MS.gene003999:intron 20.0%
!!! CAAATGTAGAAACTTATTTT+TGG - chr4.3:39276045-39276064 MS.gene003999:intron 20.0%
!!! TAGTTATGCATATTTTTGTT+GGG + chr4.3:39274075-39274094 None:intergenic 20.0%
!!! TCTACAAAATTTGTTTTTGT+TGG + chr4.3:39274146-39274165 None:intergenic 20.0%
!!! TTAAAAAAACCTTCTTTTTC+AGG + chr4.3:39273324-39273343 None:intergenic 20.0%
!!! TTAGTTATGCATATTTTTGT+TGG + chr4.3:39274076-39274095 None:intergenic 20.0%
!!! TTTGAACTATTTTGGTTATA+CGG - chr4.3:39272817-39272836 MS.gene003999:CDS 20.0%
!!! TTTTCAGATGAATTTGATTT+AGG + chr4.3:39276809-39276828 None:intergenic 20.0%
! AAAATTGAAAAACTGAACAG+AGG + chr4.3:39274387-39274406 None:intergenic 25.0%
! AACAAAAAAAACTGATGACA+AGG - chr4.3:39277181-39277200 MS.gene003999:intron 25.0%
! AAGAAAATTTGTGAAATCTG+TGG - chr4.3:39276188-39276207 MS.gene003999:intron 25.0%
! AATACAAATTACTGGATTCA+TGG - chr4.3:39273189-39273208 MS.gene003999:intron 25.0%
! AATTGAAATGGTGAATTCAA+CGG + chr4.3:39271960-39271979 None:intergenic 25.0%
! ACTCATTAATAAAGGCTAAA+AGG + chr4.3:39274881-39274900 None:intergenic 25.0%
! ATCTATGATAGTTCATTTAG+AGG + chr4.3:39273076-39273095 None:intergenic 25.0%
! ATTCAAGAACTCATTTAACA+GGG + chr4.3:39274495-39274514 None:intergenic 25.0%
! CAAGGTAAAAAATAAAAGCA+TGG + chr4.3:39273121-39273140 None:intergenic 25.0%
! CTCATTAATAAAGGCTAAAA+GGG + chr4.3:39274880-39274899 None:intergenic 25.0%
! TAATAGTTAATGCAAAGCAT+TGG - chr4.3:39274264-39274283 MS.gene003999:CDS 25.0%
! TACTGTATGCTATGAAATTA+GGG - chr4.3:39272062-39272081 MS.gene003999:CDS 25.0%
! TCATTAATAAAGGCTAAAAG+GGG + chr4.3:39274879-39274898 None:intergenic 25.0%
! TTAAAAAATGGGTCATGTTA+AGG + chr4.3:39276151-39276170 None:intergenic 25.0%
! TTGTATGTTGTATTAGATGT+TGG - chr4.3:39274356-39274375 MS.gene003999:CDS 25.0%
! TTTCAATCCAATATACAAGA+TGG + chr4.3:39274629-39274648 None:intergenic 25.0%
!! AAAAAAAGTGCAAGGATAAA+AGG + chr4.3:39273380-39273399 None:intergenic 25.0%
!! AATAGTTAATGCAAAGCATT+GGG - chr4.3:39274265-39274284 MS.gene003999:CDS 25.0%
!! ACATTTTCCATCTTGTATAT+TGG - chr4.3:39274619-39274638 MS.gene003999:CDS 25.0%
!! CATATTACCATTTTATATCC+TGG + chr4.3:39276976-39276995 None:intergenic 25.0%
!! TGATTTTATAAAGTGAGACA+TGG - chr4.3:39273936-39273955 MS.gene003999:CDS 25.0%
!!! AAATGTGTTAAGAAGTGTTA+TGG + chr4.3:39274605-39274624 None:intergenic 25.0%
!!! ATTAGCTTTTACTCTCTTAT+AGG - chr4.3:39274526-39274545 MS.gene003999:CDS 25.0%
!!! ATTTTTTACCTTGCAACATT+CGG - chr4.3:39273128-39273147 MS.gene003999:intron 25.0%
!!! CATGACCCATTTTTTAAATA+AGG - chr4.3:39276154-39276173 MS.gene003999:CDS 25.0%
!!! CCATTTTTCCTAATTATTAC+CGG - chr4.3:39272459-39272478 MS.gene003999:CDS 25.0%
!!! TTAAAGTTTTTTACTGTCGA+TGG - chr4.3:39273412-39273431 MS.gene003999:intron 25.0%
!!! TTTATCCTTGCACTTTTTTT+TGG - chr4.3:39273380-39273399 MS.gene003999:CDS 25.0%
AAAAATAAAGATCCGTTAGC+AGG + chr4.3:39274848-39274867 None:intergenic 30.0%
AATTCAGAGGAAGAAAGATA+AGG - chr4.3:39273466-39273485 MS.gene003999:intron 30.0%
ACTTCATAACACAGTAGTTT+GGG + chr4.3:39274043-39274062 None:intergenic 30.0%
AGTAAGCATATATGCAAAAG+CGG + chr4.3:39274744-39274763 None:intergenic 30.0%
AGTCTTGATTTACCATTCAT+TGG - chr4.3:39273343-39273362 MS.gene003999:CDS 30.0%
ATCCAATTCTATAGTTGTCA+AGG + chr4.3:39274240-39274259 None:intergenic 30.0%
ATTAATAAAGGCTAAAAGGG+GGG + chr4.3:39274877-39274896 None:intergenic 30.0%
ATTCAGTAGCATAATCTGAT+GGG - chr4.3:39274803-39274822 MS.gene003999:intron 30.0%
CAGAAGAAGCAAATTATTCT+AGG - chr4.3:39276640-39276659 MS.gene003999:intron 30.0%
CATTAATAAAGGCTAAAAGG+GGG + chr4.3:39274878-39274897 None:intergenic 30.0%
CCGGTAATAATTAGGAAAAA+TGG + chr4.3:39272462-39272481 None:intergenic 30.0%
GATTCAAGAACTCATTTAAC+AGG + chr4.3:39274496-39274515 None:intergenic 30.0%
GGAATTCGAAAATGATTTAC+TGG + chr4.3:39274705-39274724 None:intergenic 30.0%
GTACTGTATGCTATGAAATT+AGG - chr4.3:39272061-39272080 MS.gene003999:CDS 30.0%
GTCTTGATTTACCATTCATT+GGG - chr4.3:39273344-39273363 MS.gene003999:CDS 30.0%
GTGCTTATTAACTTCATACA+TGG - chr4.3:39272765-39272784 MS.gene003999:CDS 30.0%
TAAGGAGAGTAAAGATATCA+TGG - chr4.3:39273484-39273503 MS.gene003999:intron 30.0%
TAATACTATTTGTTCGTTGC+TGG - chr4.3:39273528-39273547 MS.gene003999:intron 30.0%
TATGCTTACTTAGTTTCGTT+TGG - chr4.3:39274754-39274773 MS.gene003999:intron 30.0%
TCACATCAAAAAAATAGCAG+AGG + chr4.3:39272636-39272655 None:intergenic 30.0%
TCTGTACAGAGAGATAAAAA+TGG - chr4.3:39276280-39276299 MS.gene003999:intron 30.0%
TGGAACCATAATAGTAATTC+TGG + chr4.3:39275935-39275954 None:intergenic 30.0%
TTCCAAATTTCAAAAGCAGT+TGG + chr4.3:39272549-39272568 None:intergenic 30.0%
TTCCTTGACAACTATAGAAT+TGG - chr4.3:39274235-39274254 MS.gene003999:CDS 30.0%
TTCTAGGTTTGAATACGAAT+TGG - chr4.3:39276656-39276675 MS.gene003999:intron 30.0%
TTGAATGTAATCACGTTTGT+CGG + chr4.3:39272434-39272453 None:intergenic 30.0%
! ACATGTTGAATTTTGGATGT+AGG - chr4.3:39272229-39272248 MS.gene003999:CDS 30.0%
! ACTCATTTAACAGGGTTTTT+AGG + chr4.3:39274487-39274506 None:intergenic 30.0%
! ATGTTTTCAGCTTCTTAAAG+TGG - chr4.3:39273899-39273918 MS.gene003999:CDS 30.0%
! CAGTTTTCAATTCACCTTAT+CGG - chr4.3:39274574-39274593 MS.gene003999:CDS 30.0%
! CATGTTGAATTTTGGATGTA+GGG - chr4.3:39272230-39272249 MS.gene003999:CDS 30.0%
! CTTGAAAAATGATTTGTAGG+TGG - chr4.3:39272662-39272681 MS.gene003999:CDS 30.0%
! GTGCTTGAAAAATGATTTGT+AGG - chr4.3:39272659-39272678 MS.gene003999:CDS 30.0%
! TTGCTGGATTACGTTTTATA+GGG - chr4.3:39273544-39273563 MS.gene003999:intron 30.0%
! TTTTATAAAGTGAGACATGG+TGG - chr4.3:39273939-39273958 MS.gene003999:CDS 30.0%
!! TTTCTTATTGGTTTCACAGT+GGG - chr4.3:39273850-39273869 MS.gene003999:intron 30.0%
!! TTTTGGTTATACGGTAATCT+TGG - chr4.3:39272826-39272845 MS.gene003999:CDS 30.0%
!!! GTATTTTGATACCCAATGAA+TGG + chr4.3:39273358-39273377 None:intergenic 30.0%
!!! TTACCTTCTATTTTTACTGC+TGG + chr4.3:39276395-39276414 None:intergenic 30.0%
!!! TTCCAACTGCTTTTGAAATT+TGG - chr4.3:39272544-39272563 MS.gene003999:intron 30.0%
!!! TTTTCTTATTGGTTTCACAG+TGG - chr4.3:39273849-39273868 MS.gene003999:intron 30.0%
!!! TTTTTTACTGTCGATGGATT+AGG - chr4.3:39273418-39273437 MS.gene003999:intron 30.0%
AAAATTTCACAGCTCCAAAC+AGG + chr4.3:39275966-39275985 None:intergenic 35.0%
AACCTATTCGCTTACTAACT+GGG + chr4.3:39276847-39276866 None:intergenic 35.0%
AAGAGTTGTATGAGAAGTCA+AGG + chr4.3:39276422-39276441 None:intergenic 35.0%
AAGCTCTTTCATGAACTTAC+CGG + chr4.3:39273224-39273243 None:intergenic 35.0%
ACACTGTACATCTCTGATAA+TGG - chr4.3:39277037-39277056 MS.gene003999:intron 35.0%
ACGGTAATCTTGGAGATTAA+TGG - chr4.3:39272836-39272855 MS.gene003999:intron 35.0%
ACTATCATACCTTCGCATTA+TGG + chr4.3:39275549-39275568 None:intergenic 35.0%
ACTTCTAAACTTGTGCCTTA+AGG + chr4.3:39276025-39276044 None:intergenic 35.0%
AGAAAGGCCAGGATATAAAA+TGG - chr4.3:39276966-39276985 MS.gene003999:intron 35.0%
AGAAGAACTCCTGAAAAAGA+AGG - chr4.3:39273312-39273331 MS.gene003999:CDS 35.0%
AGAAGATTTATCACTGCCAA+AGG + chr4.3:39277069-39277088 None:intergenic 35.0%
AGACCAGCAGTAAAAATAGA+AGG - chr4.3:39276389-39276408 MS.gene003999:CDS 35.0%
AGAGAGAAATTGACCATTGA+AGG - chr4.3:39276546-39276565 MS.gene003999:intron 35.0%
AGTATATGCAGATCTCCAAA+GGG - chr4.3:39274957-39274976 MS.gene003999:intron 35.0%
AGTGATAAATCTTCTGGCAA+GGG - chr4.3:39277074-39277093 MS.gene003999:intron 35.0%
ATGATTCTGAGTTAGAAGAC+AGG - chr4.3:39277417-39277436 MS.gene003999:intron 35.0%
ATGCATAAACTAACTACTGC+AGG + chr4.3:39276470-39276489 None:intergenic 35.0%
ATGGTTCTTCATCATCACTT+TGG + chr4.3:39277619-39277638 None:intergenic 35.0%
ATTACAAACCGAATGTTGCA+AGG + chr4.3:39273139-39273158 None:intergenic 35.0%
CATATACACCATGATGTTTG+AGG + chr4.3:39272572-39272591 None:intergenic 35.0%
CATTCAGTAGCATAATCTGA+TGG - chr4.3:39274802-39274821 MS.gene003999:intron 35.0%
CTATCATACCTTCGCATTAT+GGG + chr4.3:39275548-39275567 None:intergenic 35.0%
CTGAAAATGAAGAGTAAACC+AGG - chr4.3:39277551-39277570 MS.gene003999:intron 35.0%
CTGTATCCTTTCAGAAGAAA+TGG + chr4.3:39274994-39275013 None:intergenic 35.0%
CTTCATAACACAGTAGTTTG+GGG + chr4.3:39274042-39274061 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + chr4.3:39276024-39276043 None:intergenic 35.0%
GAAAAAAACTCCTTGTTCAC+TGG + chr4.3:39277128-39277147 None:intergenic 35.0%
GACTTCATAACACAGTAGTT+TGG + chr4.3:39274044-39274063 None:intergenic 35.0%
GATAAAAATGGCAAAGCTTC+AGG - chr4.3:39276292-39276311 MS.gene003999:intron 35.0%
GATCTTCTCCTTGAATAAGA+TGG + chr4.3:39275083-39275102 None:intergenic 35.0%
GGATAACAAGTGAAATTCAG+AGG - chr4.3:39273453-39273472 MS.gene003999:intron 35.0%
GGATTCATGGAAAAAAACAC+CGG - chr4.3:39273202-39273221 MS.gene003999:intron 35.0%
GGTGCAAAAAATATTGTCAC+CGG - chr4.3:39276228-39276247 MS.gene003999:intron 35.0%
GTAAAGATATCATGGAAGAG+AGG - chr4.3:39273492-39273511 MS.gene003999:intron 35.0%
GTAAGTTCATGAAAGAGCTT+TGG - chr4.3:39273224-39273243 MS.gene003999:intron 35.0%
GTAATGATGCAGAAAGTGAA+CGG - chr4.3:39273154-39273173 MS.gene003999:intron 35.0%
TAACTTCATACATGGTCTTC+TGG - chr4.3:39272773-39272792 MS.gene003999:CDS 35.0%
TAAGGTGAATTGAAAACTGC+AGG + chr4.3:39274573-39274592 None:intergenic 35.0%
TAATGATGCAGAAAGTGAAC+GGG - chr4.3:39273155-39273174 MS.gene003999:intron 35.0%
TAGTATATGCAGATCTCCAA+AGG - chr4.3:39274956-39274975 MS.gene003999:intron 35.0%
TATCATACCTTCGCATTATG+GGG + chr4.3:39275547-39275566 None:intergenic 35.0%
TGTGCATTCAATGTCTTGAA+AGG - chr4.3:39276072-39276091 MS.gene003999:intron 35.0%
TGTTGACACCGGTAATAATT+AGG + chr4.3:39272470-39272489 None:intergenic 35.0%
TTCATAACACAGTAGTTTGG+GGG + chr4.3:39274041-39274060 None:intergenic 35.0%
TTGCTTGTGGTGATATTGAT+CGG + chr4.3:39276363-39276382 None:intergenic 35.0%
TTTCAGCTTCTTAAAGTGGA+TGG - chr4.3:39273903-39273922 MS.gene003999:CDS 35.0%
TTTGGCAGTGATAAATCTTC+TGG - chr4.3:39277068-39277087 MS.gene003999:intron 35.0%
! AAAGGCCAAAAAAAAGTGCA+AGG + chr4.3:39273388-39273407 None:intergenic 35.0%
! ACAACTCTTTTATCTGCTCA+TGG - chr4.3:39276433-39276452 MS.gene003999:CDS 35.0%
! AGCTAGCTTCTGCAATTATT+TGG - chr4.3:39273611-39273630 MS.gene003999:intron 35.0%
! AGGATAGGAGAAAGCATAAA+AGG - chr4.3:39277354-39277373 MS.gene003999:CDS 35.0%
! ATTTGGAACCTCAAACATCA+TGG - chr4.3:39272561-39272580 MS.gene003999:intron 35.0%
! GCTAGCTTCTGCAATTATTT+GGG - chr4.3:39273612-39273631 MS.gene003999:intron 35.0%
! GTGTCTGCTATCAAAAGTAT+CGG + chr4.3:39272412-39272431 None:intergenic 35.0%
! GTTGCTGGATTACGTTTTAT+AGG - chr4.3:39273543-39273562 MS.gene003999:intron 35.0%
! GTTTTATAGGGCTGAGATTT+TGG - chr4.3:39273556-39273575 MS.gene003999:intron 35.0%
! TTTCTTCTGAAAGGATACAG+CGG - chr4.3:39274994-39275013 MS.gene003999:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr4.3:39276007-39276026 MS.gene003999:intron 35.0%
!! AGGATGAGTTTTATCCTGAA+AGG - chr4.3:39276888-39276907 MS.gene003999:CDS 35.0%
!! CTGATAATGGTAAACTCCTT+TGG - chr4.3:39277050-39277069 MS.gene003999:intron 35.0%
!! GATTCTGTTTCTGAAGAAAG+TGG - chr4.3:39277311-39277330 MS.gene003999:CDS 35.0%
!! GGATGAGTTTTATCCTGAAA+GGG - chr4.3:39276889-39276908 MS.gene003999:CDS 35.0%
!! GTATTTGCTATCTTTGACAG+AGG - chr4.3:39274662-39274681 MS.gene003999:intron 35.0%
!! TGTGTTAAGAAGTGTTATGG+TGG + chr4.3:39274602-39274621 None:intergenic 35.0%
!!! GTCACTTTTCTAGTAATCCA+AGG + chr4.3:39272720-39272739 None:intergenic 35.0%
!!! GTGAACAAGGAGTTTTTTTC+TGG - chr4.3:39277128-39277147 MS.gene003999:intron 35.0%
AACAGAGATCTCCTAGTATG+CGG - chr4.3:39275450-39275469 MS.gene003999:intron 40.0%
AAGAAAGTGGCAAGCATAGA+AGG - chr4.3:39277324-39277343 MS.gene003999:CDS 40.0%
AAGCGGACCTTGAATAACTT+CGG + chr4.3:39274727-39274746 None:intergenic 40.0%
ACCTATTCGCTTACTAACTG+GGG + chr4.3:39276846-39276865 None:intergenic 40.0%
AGAAAGTGGCAAGCATAGAA+GGG - chr4.3:39277325-39277344 MS.gene003999:CDS 40.0%
AGCTCAATCTCAAGCTTCTT+TGG + chr4.3:39277647-39277666 None:intergenic 40.0%
AGGATGGAAAACAAACTGAC+AGG - chr4.3:39273743-39273762 MS.gene003999:intron 40.0%
AGGCTATATTTCAGACGATG+AGG - chr4.3:39277571-39277590 MS.gene003999:intron 40.0%
AGGTGAATATGGACGTAATG+AGG - chr4.3:39272694-39272713 MS.gene003999:CDS 40.0%
ATAAACTAACTACTGCAGGC+AGG + chr4.3:39276466-39276485 None:intergenic 40.0%
ATAGAAGGGATGGAAAGGAT+AGG - chr4.3:39277339-39277358 MS.gene003999:CDS 40.0%
ATAGGAGGCCATCTTATTCA+AGG - chr4.3:39275072-39275091 MS.gene003999:intron 40.0%
ATCATACCTTCGCATTATGG+GGG + chr4.3:39275546-39275565 None:intergenic 40.0%
ATCTGCCAAATTTCATCACG+AGG - chr4.3:39276868-39276887 MS.gene003999:CDS 40.0%
CAGTGATAAATCTTCTGGCA+AGG - chr4.3:39277073-39277092 MS.gene003999:intron 40.0%
CATGCTCTTCTTTGCTTTGA+GGG + chr4.3:39277690-39277709 None:intergenic 40.0%
CCCACTAGAAAGACTTCATA+CGG + chr4.3:39274183-39274202 None:intergenic 40.0%
CCTTTACCTCAAACTACTGT+AGG - chr4.3:39273642-39273661 MS.gene003999:intron 40.0%
CGAATTCCCGAAGTTATTCA+AGG - chr4.3:39274717-39274736 MS.gene003999:intron 40.0%
CTCATCCTCGTGATGAAATT+TGG + chr4.3:39276876-39276895 None:intergenic 40.0%
GAACCTATTCGCTTACTAAC+TGG + chr4.3:39276848-39276867 None:intergenic 40.0%
GAACTCCATTCATCATGAGA+AGG + chr4.3:39275665-39275684 None:intergenic 40.0%
GAGCAAGGAACAGGTAAAAT+CGG - chr4.3:39273776-39273795 MS.gene003999:intron 40.0%
GAGCGCAATGAAAACACAAA+TGG + chr4.3:39273591-39273610 None:intergenic 40.0%
GGAAAACAAACTGACAGGAA+TGG - chr4.3:39273748-39273767 MS.gene003999:intron 40.0%
GGACATGACAAAGGTGAATA+TGG - chr4.3:39272683-39272702 MS.gene003999:CDS 40.0%
GGTATGATAGTAGAACTCCA+CGG - chr4.3:39275558-39275577 MS.gene003999:intron 40.0%
TAAGTCACAGAAGTTTGCAC+CGG - chr4.3:39272304-39272323 MS.gene003999:CDS 40.0%
TAATATATACAGGCCCTCAC+TGG - chr4.3:39274015-39274034 MS.gene003999:CDS 40.0%
TACCTCAAACTACTGTAGGA+CGG - chr4.3:39273646-39273665 MS.gene003999:intron 40.0%
TCAAGCTTCTTTGGATCGTA+TGG + chr4.3:39277638-39277657 None:intergenic 40.0%
TCATGCTCTTCTTTGCTTTG+AGG + chr4.3:39277691-39277710 None:intergenic 40.0%
TGAAAGGAATAAGAAAGGCC+AGG - chr4.3:39276955-39276974 MS.gene003999:intron 40.0%
TGAGATTGAGCTGCGTAATA+AGG - chr4.3:39277655-39277674 MS.gene003999:intron 40.0%
TGAGTTAGAAGACAGGAAAG+AGG - chr4.3:39277424-39277443 MS.gene003999:intron 40.0%
TGTGGTGATATTGATCGGAT+TGG + chr4.3:39276358-39276377 None:intergenic 40.0%
TGTTCAACTTTGCCTGCTAA+CGG - chr4.3:39274833-39274852 MS.gene003999:intron 40.0%
TTGAAAACTGCAGGTGAATG+TGG + chr4.3:39274564-39274583 None:intergenic 40.0%
TTTGTAGGTGGACATGACAA+AGG - chr4.3:39272674-39272693 MS.gene003999:CDS 40.0%
! CCGTATGAAGTCTTTCTAGT+GGG - chr4.3:39274180-39274199 MS.gene003999:CDS 40.0%
! CCTACAGTAGTTTGAGGTAA+AGG + chr4.3:39273645-39273664 None:intergenic 40.0%
! GAAGTCTTTCTAGTGGGATA+AGG - chr4.3:39274186-39274205 MS.gene003999:CDS 40.0%
! TCATCGTCTGAAATATAGCC+TGG + chr4.3:39277572-39277591 None:intergenic 40.0%
!! AGATCCAACTTTGAAGTCCA+GGG - chr4.3:39273702-39273721 MS.gene003999:intron 40.0%
!! CTAGAGGGTTGATAAACTTC+CGG + chr4.3:39276250-39276269 None:intergenic 40.0%
!! GAAGGCACTCAAGATTTAGT+TGG - chr4.3:39277254-39277273 MS.gene003999:intron 40.0%
!! TATGGTCTGTTGGCTTCTTT+GGG + chr4.3:39276584-39276603 None:intergenic 40.0%
!! TTATGGTCTGTTGGCTTCTT+TGG + chr4.3:39276585-39276604 None:intergenic 40.0%
AAGACTGCACAGGACTTCTT+TGG + chr4.3:39275745-39275764 None:intergenic 45.0%
AAGACTTCATACGGCGACTT+AGG + chr4.3:39274174-39274193 None:intergenic 45.0%
AAGTCCTGTGCAGTCTTCTA+TGG - chr4.3:39275748-39275767 MS.gene003999:intron 45.0%
AATAAAGGCTAAAAGGGGGG+CGG + chr4.3:39274874-39274893 None:intergenic 45.0%
ACAGAAGTCACCAGTGAACA+AGG - chr4.3:39277115-39277134 MS.gene003999:intron 45.0%
ACAGAAGTTTGCACCGGAAT+TGG - chr4.3:39272310-39272329 MS.gene003999:CDS 45.0%
ACAGGTGATCTATGCTGCAA+AGG + chr4.3:39275599-39275618 None:intergenic 45.0%
ACTAGGAGATCTCTGTTGCA+GGG + chr4.3:39275447-39275466 None:intergenic 45.0%
AGAAAAGTGACCGAGCTTCT+TGG - chr4.3:39272729-39272748 MS.gene003999:CDS 45.0%
AGCGGACCTTGAATAACTTC+GGG + chr4.3:39274726-39274745 None:intergenic 45.0%
AGTCCTGTGCAGTCTTCTAT+GGG - chr4.3:39275749-39275768 MS.gene003999:intron 45.0%
AGTCTTCTATGGGAAGAGTC+AGG - chr4.3:39275759-39275778 MS.gene003999:intron 45.0%
AGTGCACAGAAAAATGCCAG+TGG - chr4.3:39273259-39273278 MS.gene003999:CDS 45.0%
ATATGGACGTAATGAGGCCT+TGG - chr4.3:39272700-39272719 MS.gene003999:CDS 45.0%
ATCAACCCTCTAGTCCTTTG+CGG - chr4.3:39276257-39276276 MS.gene003999:intron 45.0%
ATGAGAAGGAGACCTCTTAG+GGG + chr4.3:39275651-39275670 None:intergenic 45.0%
ATGGAGAATGCATTCCACGT+CGG + chr4.3:39275130-39275149 None:intergenic 45.0%
CAAACCAGATGCTCCAATTC+CGG + chr4.3:39272326-39272345 None:intergenic 45.0%
CAACATGTTAGTGTGGTGTC+TGG - chr4.3:39272485-39272504 MS.gene003999:CDS 45.0%
CAAGCATAGAAGGGATGGAA+AGG - chr4.3:39277334-39277353 MS.gene003999:CDS 45.0%
CACAAAGATCTCCTCATAGG+AGG - chr4.3:39275057-39275076 MS.gene003999:CDS 45.0%
CACCACAAAGATCTCCTCAT+AGG - chr4.3:39275054-39275073 MS.gene003999:CDS 45.0%
CACCATCACCTATTAGACGA+AGG - chr4.3:39275411-39275430 MS.gene003999:intron 45.0%
CAGCATAGATCACCTGTTTC+GGG - chr4.3:39275602-39275621 MS.gene003999:intron 45.0%
CATGAGAAGGAGACCTCTTA+GGG + chr4.3:39275652-39275671 None:intergenic 45.0%
CCACACTAACATGTTGACAC+CGG + chr4.3:39272481-39272500 None:intergenic 45.0%
CTCCTATGAGGAGATCTTTG+TGG + chr4.3:39275059-39275078 None:intergenic 45.0%
CTTAGTGGTATTCGACGCAT+CGG + chr4.3:39275491-39275510 None:intergenic 45.0%
GAAAAGTGACCGAGCTTCTT+GGG - chr4.3:39272730-39272749 MS.gene003999:CDS 45.0%
GAATAAGATGGCCTCCTATG+AGG + chr4.3:39275071-39275090 None:intergenic 45.0%
GAATCCCTGGACTTCAAAGT+TGG + chr4.3:39273709-39273728 None:intergenic 45.0%
GACCTTCGTCTAATAGGTGA+TGG + chr4.3:39275416-39275435 None:intergenic 45.0%
GATAAATCTTCTGGCAAGGG+AGG - chr4.3:39277077-39277096 MS.gene003999:intron 45.0%
GATCAGCACCACAAATCAGA+AGG - chr4.3:39277236-39277255 MS.gene003999:intron 45.0%
GATCTATGCTGCAAAGGAGA+TGG + chr4.3:39275593-39275612 None:intergenic 45.0%
GATTGGAGACTTATCTGGTG+TGG + chr4.3:39276341-39276360 None:intergenic 45.0%
GCAGCATAGATCACCTGTTT+CGG - chr4.3:39275601-39275620 MS.gene003999:intron 45.0%
GCCGTATGAAGTCTTTCTAG+TGG - chr4.3:39274179-39274198 MS.gene003999:CDS 45.0%
GCGCTCTCTACAAGAGAAAT+AGG + chr4.3:39276780-39276799 None:intergenic 45.0%
GGATGTCATGGCTAGGTTTA+TGG + chr4.3:39276602-39276621 None:intergenic 45.0%
GGCGTTCCATTTCTTCTGAA+AGG - chr4.3:39274985-39275004 MS.gene003999:intron 45.0%
GGTCTCCTTCTCATGATGAA+TGG - chr4.3:39275657-39275676 MS.gene003999:intron 45.0%
GTCTTCAAACCCAAGAAGCT+CGG + chr4.3:39272742-39272761 None:intergenic 45.0%
GTTCCACTCCATATCCTGTT+TGG - chr4.3:39275949-39275968 MS.gene003999:CDS 45.0%
TACTAGGAGATCTCTGTTGC+AGG + chr4.3:39275448-39275467 None:intergenic 45.0%
TATCTCCATCTCCAGTCAGA+AGG - chr4.3:39275702-39275721 MS.gene003999:intron 45.0%
TCACAGCTCCAAACAGGATA+TGG + chr4.3:39275960-39275979 None:intergenic 45.0%
TCAGGTACAGTGACACTTGA+GGG - chr4.3:39275777-39275796 MS.gene003999:intron 45.0%
TCATGAGAAGGAGACCTCTT+AGG + chr4.3:39275653-39275672 None:intergenic 45.0%
TCCCCAGTTAGTAAGCGAAT+AGG - chr4.3:39276842-39276861 MS.gene003999:CDS 45.0%
TGGCTAGGTTTATGGTCTGT+TGG + chr4.3:39276594-39276613 None:intergenic 45.0%
TTAGCATCCAAGAACTGCTG+AGG + chr4.3:39273289-39273308 None:intergenic 45.0%
TTGGATGTAGGGTACATCTG+CGG - chr4.3:39272241-39272260 MS.gene003999:CDS 45.0%
! AAAGTGAGACATGGTGGAAG+TGG - chr4.3:39273945-39273964 MS.gene003999:CDS 45.0%
! ACAGGAATGGTGTTAGAGCA+AGG - chr4.3:39273761-39273780 MS.gene003999:intron 45.0%
! ATGGTGTTAGAGCAAGGAAC+AGG - chr4.3:39273767-39273786 MS.gene003999:intron 45.0%
! CTTGAGTGCCTTCTGATTTG+TGG + chr4.3:39277247-39277266 None:intergenic 45.0%
! CTTTCTAGTGGGATAAGGCT+TGG - chr4.3:39274191-39274210 MS.gene003999:CDS 45.0%
! GATCGGATTGGAGACTTATC+TGG + chr4.3:39276346-39276365 None:intergenic 45.0%
! GATCTTTTCTTGCCCGAAAC+AGG + chr4.3:39275617-39275636 None:intergenic 45.0%
! TAGGTGATGGTGATCTACGT+CGG + chr4.3:39275403-39275422 None:intergenic 45.0%
! TCTCTCTTGTTTGCCTCAGA+GGG + chr4.3:39276533-39276552 None:intergenic 45.0%
! TGGATTAGGCTGAAAGCGAT+AGG - chr4.3:39273432-39273451 MS.gene003999:intron 45.0%
! TTCTCTCTTGTTTGCCTCAG+AGG + chr4.3:39276534-39276553 None:intergenic 45.0%
! TTGTTGTTGGGCCAGTGTTT+GGG - chr4.3:39274430-39274449 MS.gene003999:CDS 45.0%
!! ACAGGACTTCTTTGGAGTCT+TGG + chr4.3:39275737-39275756 None:intergenic 45.0%
!! ACTTTGAAGTCCAGGGATTC+AGG - chr4.3:39273709-39273728 MS.gene003999:intron 45.0%
!! AGAGAGCATCTTGGTGAACT+CGG - chr4.3:39274454-39274473 MS.gene003999:CDS 45.0%
!! ATGGTCTGTTGGCTTCTTTG+GGG + chr4.3:39276583-39276602 None:intergenic 45.0%
!! CAGATCCAACTTTGAAGTCC+AGG - chr4.3:39273701-39273720 MS.gene003999:intron 45.0%
!! CTGGTCTTACTTCTTGCTTG+TGG + chr4.3:39276376-39276395 None:intergenic 45.0%
!! CTTTGAAGTCCAGGGATTCA+GGG - chr4.3:39273710-39273729 MS.gene003999:intron 45.0%
!! GTGTTATGGTGGTACCGATA+AGG + chr4.3:39274591-39274610 None:intergenic 45.0%
!! TTTGTTGTTGGGCCAGTGTT+TGG - chr4.3:39274429-39274448 MS.gene003999:CDS 45.0%
!!! GTGGTGCTGATCACTACTTT+TGG + chr4.3:39277228-39277247 None:intergenic 45.0%
AAGACAGGAAAGAGGCCAAG+AGG - chr4.3:39277432-39277451 MS.gene003999:intron 50.0%
AATGTAGTGCCCTGAATCCC+TGG + chr4.3:39273722-39273741 None:intergenic 50.0%
ACAGACCGCAAAGGACTAGA+GGG + chr4.3:39276265-39276284 None:intergenic 50.0%
ACGATGAGGAAGCTGAACGA+AGG - chr4.3:39277585-39277604 MS.gene003999:intron 50.0%
ACTGGTGACTTCTGTTGACC+AGG + chr4.3:39277110-39277129 None:intergenic 50.0%
AGAGGCCAAGAGGAGGAAAA+AGG - chr4.3:39277442-39277461 MS.gene003999:intron 50.0%
AGTGGCAAGCATAGAAGGGA+TGG - chr4.3:39277329-39277348 MS.gene003999:CDS 50.0%
ATAAAGGCTAAAAGGGGGGC+GGG + chr4.3:39274873-39274892 None:intergenic 50.0%
ATCGAAAGCGGGAAGAGAGA+CGG - chr4.3:39277498-39277517 MS.gene003999:intron 50.0%
CATCTGCGGATCAAGACACT+CGG - chr4.3:39272255-39272274 MS.gene003999:CDS 50.0%
CGATGAGGAAGCTGAACGAA+GGG - chr4.3:39277586-39277605 MS.gene003999:intron 50.0%
CGCATTATGGGGGATTGCAT+TGG + chr4.3:39275536-39275555 None:intergenic 50.0%
CTACGTCGTCGTATAGGAGA+AGG + chr4.3:39275362-39275381 None:intergenic 50.0%
CTAGGAGATCTCTGTTGCAG+GGG + chr4.3:39275446-39275465 None:intergenic 50.0%
CTCAAACTACTGTAGGACGG+AGG - chr4.3:39273649-39273668 MS.gene003999:intron 50.0%
CTCCGTCCTACAGTAGTTTG+AGG + chr4.3:39273651-39273670 None:intergenic 50.0%
CTTCATACGGCGACTTAGGA+AGG + chr4.3:39274170-39274189 None:intergenic 50.0%
CTTCCCATAGAAGACTGCAC+AGG + chr4.3:39275755-39275774 None:intergenic 50.0%
CTTTGTGGTGAACGTCTTCG+AGG + chr4.3:39275044-39275063 None:intergenic 50.0%
GAACACCCTCTCCTGTTAGA+CGG - chr4.3:39275162-39275181 MS.gene003999:intron 50.0%
GAAGAAGAAGCTGCGAAAGG+AGG - chr4.3:39277469-39277488 MS.gene003999:intron 50.0%
GAATACCACTAAGCCGTGGA+CGG - chr4.3:39275498-39275517 MS.gene003999:intron 50.0%
GAATGCATTCCACGTCGGAT+AGG + chr4.3:39275125-39275144 None:intergenic 50.0%
GAGGGTGACCTTCGTCTAAT+AGG + chr4.3:39275422-39275441 None:intergenic 50.0%
GATCTCCGTCTAACAGGAGA+GGG + chr4.3:39275170-39275189 None:intergenic 50.0%
GATGCAGAAAGTGAACGGGA+AGG - chr4.3:39273159-39273178 MS.gene003999:intron 50.0%
GCAGATCACCTTATCCTGCA+CGG - chr4.3:39275297-39275316 MS.gene003999:intron 50.0%
GCTCCAAACAGGATATGGAG+TGG + chr4.3:39275955-39275974 None:intergenic 50.0%
GGAAGAGAGACGGCGAAAAA+GGG - chr4.3:39277508-39277527 MS.gene003999:intron 50.0%
GGAAGAGAGGCTGAAGAAAC+TGG - chr4.3:39273505-39273524 MS.gene003999:intron 50.0%
GGAGAAGAAGAAGCTGCGAA+AGG - chr4.3:39277466-39277485 MS.gene003999:intron 50.0%
GGGACTCAAGCTTCCTTCAA+TGG + chr4.3:39276562-39276581 None:intergenic 50.0%
GGTGAAGTTCTCCTTCTGAC+TGG + chr4.3:39275716-39275735 None:intergenic 50.0%
GGTGATCTACGTCGTCGTAT+AGG + chr4.3:39275368-39275387 None:intergenic 50.0%
GTCAGGTACAGTGACACTTG+AGG - chr4.3:39275776-39275795 MS.gene003999:intron 50.0%
GTCCACATGAAATCCCTCTG+AGG - chr4.3:39276517-39276536 MS.gene003999:intron 50.0%
GTTCTCCTTCTGACTGGAGA+TGG + chr4.3:39275710-39275729 None:intergenic 50.0%
TACAGACCGCAAAGGACTAG+AGG + chr4.3:39276266-39276285 None:intergenic 50.0%
TCATCTTCTCCTATCCGACG+TGG - chr4.3:39275113-39275132 MS.gene003999:intron 50.0%
TCTCTCTGTACAGACCGCAA+AGG + chr4.3:39276274-39276293 None:intergenic 50.0%
TCTGCAGCATAAGAATCGCG+AGG + chr4.3:39277161-39277180 None:intergenic 50.0%
TGAAAGGGCAGCTAGTCATC+TGG - chr4.3:39276904-39276923 MS.gene003999:CDS 50.0%
TGCAATCCCCCATAATGCGA+AGG - chr4.3:39275537-39275556 MS.gene003999:intron 50.0%
TGCCTCAGAGGGATTTCATG+TGG + chr4.3:39276522-39276541 None:intergenic 50.0%
TGGTGTTCCTCAGCAGTTCT+TGG - chr4.3:39273279-39273298 MS.gene003999:CDS 50.0%
! ACATGGTCTTCTGGAAGCGA+AGG - chr4.3:39272782-39272801 MS.gene003999:CDS 50.0%
! AGATGACTAGCTGCCCTTTC+AGG + chr4.3:39276905-39276924 None:intergenic 50.0%
! CCGGTGTCAACATGTTAGTG+TGG - chr4.3:39272478-39272497 MS.gene003999:CDS 50.0%
! CTCCTCCTTTTTCCTCCTCT+TGG + chr4.3:39277450-39277469 None:intergenic 50.0%
! GAGACATGGTGGAAGTGGTT+AGG - chr4.3:39273950-39273969 MS.gene003999:CDS 50.0%
! GATTTACTGGTTGCCCTTGC+AGG + chr4.3:39274692-39274711 None:intergenic 50.0%
! GGATTCAGGGCACTACATTC+AGG - chr4.3:39273723-39273742 MS.gene003999:intron 50.0%
! TCAGGGCACTACATTCAGGA+TGG - chr4.3:39273727-39273746 MS.gene003999:intron 50.0%
!! AGGAGGAGAAGCATCGAAAG+CGG - chr4.3:39277486-39277505 MS.gene003999:intron 50.0%
!! TGGTCTGTTGGCTTCTTTGG+GGG + chr4.3:39276582-39276601 None:intergenic 50.0%
!! TGTTTGGGCAGAGAGCATCT+TGG - chr4.3:39274445-39274464 MS.gene003999:CDS 50.0%
ACAGGAAAGAGGCCAAGAGG+AGG - chr4.3:39277435-39277454 MS.gene003999:intron 55.0%
ACTAACTACTGCAGGCAGGC+AGG + chr4.3:39276462-39276481 None:intergenic 55.0%
AGAAGGAGACCTCTTAGGGG+AGG + chr4.3:39275648-39275667 None:intergenic 55.0%
AGATCTCTGTTGCAGGGGTG+AGG + chr4.3:39275441-39275460 None:intergenic 55.0%
AGTAGTTTGGGGGCCAGTGA+GGG + chr4.3:39274031-39274050 None:intergenic 55.0%
ATAGTAGAACTCCACGGCGC+AGG - chr4.3:39275564-39275583 MS.gene003999:intron 55.0%
CGATCTCCGTCTAACAGGAG+AGG + chr4.3:39275171-39275190 None:intergenic 55.0%
CGTCGAATACCACTAAGCCG+TGG - chr4.3:39275494-39275513 MS.gene003999:intron 55.0%
CGTTGTCGTACTGGAGAAGG+TGG + chr4.3:39275278-39275297 None:intergenic 55.0%
CTACGTCGGTGCATTGGAGA+AGG + chr4.3:39275389-39275408 None:intergenic 55.0%
CTGCGTTGTCGTACTGGAGA+AGG + chr4.3:39275281-39275300 None:intergenic 55.0%
CTGCTCCTTCACTCGTCTCT+GGG + chr4.3:39276623-39276642 None:intergenic 55.0%
GAACTGCTGAGGAACACCAC+TGG + chr4.3:39273278-39273297 None:intergenic 55.0%
GACATCCCAGAGACGAGTGA+AGG - chr4.3:39276615-39276634 MS.gene003999:intron 55.0%
GACGGCGAAAAAGGGAAGAG+CGG - chr4.3:39277516-39277535 MS.gene003999:intron 55.0%
GAGGAAGCTGAACGAAGGGA+TGG - chr4.3:39277590-39277609 MS.gene003999:intron 55.0%
GATCTCTGTTGCAGGGGTGA+GGG + chr4.3:39275440-39275459 None:intergenic 55.0%
GATGCTCTCTGCCCAAACAC+TGG + chr4.3:39274444-39274463 None:intergenic 55.0%
GCAGATCTCCAAAGGGTCGA+GGG - chr4.3:39274964-39274983 MS.gene003999:intron 55.0%
GGACGGAGGATTAGATGCGA+AGG - chr4.3:39273663-39273682 MS.gene003999:intron 55.0%
GGAGATGGAGATACACGTGC+AGG + chr4.3:39275695-39275714 None:intergenic 55.0%
GGATACAGCGGTCTTCACGA+CGG - chr4.3:39275006-39275025 MS.gene003999:intron 55.0%
GGCCAAGAGGAGGAAAAAGG+AGG - chr4.3:39277445-39277464 MS.gene003999:intron 55.0%
GGGAAGAGAGACGGCGAAAA+AGG - chr4.3:39277507-39277526 MS.gene003999:intron 55.0%
GGTGATCTACGTCGGTGCAT+TGG + chr4.3:39275395-39275414 None:intergenic 55.0%
GGTGATCTGCGTTGTCGTAC+TGG + chr4.3:39275287-39275306 None:intergenic 55.0%
GTGATCTGCGTCGTCGTACT+GGG + chr4.3:39275226-39275245 None:intergenic 55.0%
TCTGCTCCTTCACTCGTCTC+TGG + chr4.3:39276624-39276643 None:intergenic 55.0%
TGACAGAGGCTCACCTGCAA+GGG - chr4.3:39274676-39274695 MS.gene003999:intron 55.0%
TGATCTGCGTCGTCGTACTG+GGG + chr4.3:39275225-39275244 None:intergenic 55.0%
TGCAGATCTCCAAAGGGTCG+AGG - chr4.3:39274963-39274982 MS.gene003999:intron 55.0%
TTGACAGAGGCTCACCTGCA+AGG - chr4.3:39274675-39274694 MS.gene003999:intron 55.0%
! GGTATTCGACGCATCGGTGA+AGG + chr4.3:39275485-39275504 None:intergenic 55.0%
! GGTGTTCTGCGTCGACGAAA+TGG + chr4.3:39275149-39275168 None:intergenic 55.0%
! TGCACCGGAATTGGAGCATC+TGG - chr4.3:39272319-39272338 MS.gene003999:CDS 55.0%
!! CACTCGTCTCTGGGATGTCA+TGG + chr4.3:39276614-39276633 None:intergenic 55.0%
!! GGAGGAGAAGCATCGAAAGC+GGG - chr4.3:39277487-39277506 MS.gene003999:intron 55.0%
!! GTCTCTGGGATGTCATGGCT+AGG + chr4.3:39276609-39276628 None:intergenic 55.0%
ATGGAACGCCCTCGACCCTT+TGG + chr4.3:39274975-39274994 None:intergenic 60.0%
CAGTAGTTTGGGGGCCAGTG+AGG + chr4.3:39274032-39274051 None:intergenic 60.0%
CTGCAAGTGCCTCCCCTAAG+AGG - chr4.3:39275636-39275655 MS.gene003999:intron 60.0%
CTGCGTCGTCGTACTGGAGA+GGG + chr4.3:39275221-39275240 None:intergenic 60.0%
CTGCGTCTCCGTGCAGGATA+AGG + chr4.3:39275308-39275327 None:intergenic 60.0%
CTGCGTCTTCGCACAGGAGA+GGG + chr4.3:39275335-39275354 None:intergenic 60.0%
CTTCGTCGTCGCACTGGAGA+GGG + chr4.3:39275194-39275213 None:intergenic 60.0%
GAGAGCTTGACCTCCGTCCA+CGG + chr4.3:39275514-39275533 None:intergenic 60.0%
GAGGGCGATCTCCGTCTAAC+AGG + chr4.3:39275176-39275195 None:intergenic 60.0%
GATCTCCTAGTATGCGGCGC+AGG - chr4.3:39275456-39275475 MS.gene003999:intron 60.0%
GGTGATCTGCGTCGTCGTAC+TGG + chr4.3:39275227-39275246 None:intergenic 60.0%
GGTGATCTGCGTCTTCGCAC+AGG + chr4.3:39275341-39275360 None:intergenic 60.0%
GGTGATCTTCGTCGTCGCAC+TGG + chr4.3:39275200-39275219 None:intergenic 60.0%
TACCACTAAGCCGTGGACGG+AGG - chr4.3:39275501-39275520 MS.gene003999:intron 60.0%
TCTGCGTCGTCGTACTGGAG+AGG + chr4.3:39275222-39275241 None:intergenic 60.0%
TCTGCGTCTTCGCACAGGAG+AGG + chr4.3:39275336-39275355 None:intergenic 60.0%
TCTTCGTCGTCGCACTGGAG+AGG + chr4.3:39275195-39275214 None:intergenic 60.0%
CGTCGTCGTACTGGGGAAGG+TGG + chr4.3:39275248-39275267 None:intergenic 65.0%
CTGCGTCGTCGTACTGGGGA+AGG + chr4.3:39275251-39275270 None:intergenic 65.0%
GACCTCCGTCCACGGCTTAG+TGG + chr4.3:39275506-39275525 None:intergenic 65.0%
GGAGATCTGCGTCTCCGTGC+AGG + chr4.3:39275314-39275333 None:intergenic 65.0%
GGTGACCTGCGCCGCATACT+AGG + chr4.3:39275464-39275483 None:intergenic 65.0%
GGAGATGGAGACCTGCGCCG+TGG + chr4.3:39275578-39275597 None:intergenic 70.0%
GGCAAGGGAGGCGAGTCTCC+TGG - chr4.3:39277089-39277108 MS.gene003999:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 39271920 39277718 39271920 ID=MS.gene003999
chr4.3 mRNA 39271920 39277718 39271920 ID=MS.gene003999.t1;Parent=MS.gene003999
chr4.3 exon 39277698 39277718 39277698 ID=MS.gene003999.t1.exon1;Parent=MS.gene003999.t1
chr4.3 CDS 39277698 39277718 39277698 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39277298 39277387 39277298 ID=MS.gene003999.t1.exon2;Parent=MS.gene003999.t1
chr4.3 CDS 39277298 39277387 39277298 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39276835 39276957 39276835 ID=MS.gene003999.t1.exon3;Parent=MS.gene003999.t1
chr4.3 CDS 39276835 39276957 39276835 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39276305 39276472 39276305 ID=MS.gene003999.t1.exon4;Parent=MS.gene003999.t1
chr4.3 CDS 39276305 39276472 39276305 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39276112 39276198 39276112 ID=MS.gene003999.t1.exon5;Parent=MS.gene003999.t1
chr4.3 CDS 39276112 39276198 39276112 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39275850 39275974 39275850 ID=MS.gene003999.t1.exon6;Parent=MS.gene003999.t1
chr4.3 CDS 39275850 39275974 39275850 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39275043 39275090 39275043 ID=MS.gene003999.t1.exon7;Parent=MS.gene003999.t1
chr4.3 CDS 39275043 39275090 39275043 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39274900 39274956 39274900 ID=MS.gene003999.t1.exon8;Parent=MS.gene003999.t1
chr4.3 CDS 39274900 39274956 39274900 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39273858 39274670 39273858 ID=MS.gene003999.t1.exon9;Parent=MS.gene003999.t1
chr4.3 CDS 39273858 39274670 39273858 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39273228 39273410 39273228 ID=MS.gene003999.t1.exon10;Parent=MS.gene003999.t1
chr4.3 CDS 39273228 39273410 39273228 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39272977 39273120 39272977 ID=MS.gene003999.t1.exon11;Parent=MS.gene003999.t1
chr4.3 CDS 39272977 39273120 39272977 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39272651 39272845 39272651 ID=MS.gene003999.t1.exon12;Parent=MS.gene003999.t1
chr4.3 CDS 39272651 39272845 39272651 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3 exon 39271920 39272562 39271920 ID=MS.gene003999.t1.exon13;Parent=MS.gene003999.t1
chr4.3 CDS 39271920 39272562 39271920 ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
Gene Sequence

>MS.gene003999

ATGTCAGGCGGTTTTTTTCGAGTAAGTTCATCGCAAACCGTTGAATTCACCATTTCAATTATTCATTTGCTTTTTGTAATAATGAATTGTTATTTAATCATTTTTCAGATCTTATTTGTGACTTTAATTTGATGAAATTAAGTACTGTATGCTATGAAATTAGGGTTCAAAACTTTGAATATTTGTTGATGAAACTGAATTAAGAGTTGTGTTGTAATTCAACTTGTTATAGTGATTTTTTGGCCTGTTTTTAAATTTTTGTATTCATAATTGAAAAATGTTACTTAGCTAGTTAGCTTATGAAATATAACATGTTGAATTTTGGATGTAGGGTACATCTGCGGATCAAGACACTCGGTTTTCGAACAAGCAAGCGAAGCTGCTTAAGTCACAGAAGTTTGCACCGGAATTGGAGCATCTGGTTTGTTTCCTTGATTGATTAATTTAGATTTGTTGATTTTTTTTATAGGGAGAATTGTCTCTATAGCACCGATACTTTTGATAGCAGACACCGACAAACGTGATTACATTCAATTATGCCATTTTTCCTAATTATTACCGGTGTCAACATGTTAGTGTGGTGTCTGGTGTTCGCGTCTGTGTCAGTGCTTTGTAGAGAACTATTTCCAACTGCTTTTGAAATTTGGAACCTCAAACATCATGGTGTATATGATCTCGATATATTTATTTATTTTAACTAGCGACATCGCTTTCCTCTGCTATTTTTTTGATGTGAGTCGTGCTTGAAAAATGATTTGTAGGTGGACATGACAAAGGTGAATATGGACGTAATGAGGCCTTGGATTACTAGAAAAGTGACCGAGCTTCTTGGGTTTGAAGACGAAGTGCTTATTAACTTCATACATGGTCTTCTGGAAGCGAAGGTAATTTATTGTTTTTGAACTATTTTGGTTATACGGTAATCTTGGAGATTAATGGCGCTTTCAACGTTCTATTTTTTATTTGCTGAATACTTACTTTATCGTTTCTTTATCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTAAATATTAAATTGTATTTGTTGAAATCAATATAGCATTTATTTCAAACATTATAATCACTTTGATTTTGAGTTGTAACTGTGCAATCTTTTTCCTCTAAATGAACTATCATAGATTTACATGCACTTTCTGATAATGCCATGCTTTTATTTTTTACCTTGCAACATTCGGTTTGTAATGATGCAGAAAGTGAACGGGAAGGAAATTCAAATACAAATTACTGGATTCATGGAAAAAAACACCGGTAAGTTCATGAAAGAGCTTTGGACACTTCTTCTCAGTGCACAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCTAAAGAAGAAGAACTCCTGAAAAAGAAGGTTTTTTTAAGTCTTGATTTACCATTCATTGGGTATCAAAATACCTTTTATCCTTGCACTTTTTTTTGGCCTTTCTGATTAAAGTTTTTTACTGTCGATGGATTAGGCTGAAAGCGATAGGATAACAAGTGAAATTCAGAGGAAGAAAGATAAGGAGAGTAAAGATATCATGGAAGAGAGGCTGAAGAAACTGGTAATACTATTTGTTCGTTGCTGGATTACGTTTTATAGGGCTGAGATTTTGGTTTTAACTTCCATTTGTGTTTTCATTGCGCTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCAAACTACTGTAGGACGGAGGATTAGATGCGAAGGATAATGATGCTGCTTCAGATCCAACTTTGAAGTCCAGGGATTCAGGGCACTACATTCAGGATGGAAAACAAACTGACAGGAATGGTGTTAGAGCAAGGAACAGGTAAAATCGGCCGATTCCTTCTTTTTTAATCATTATGTGCCGATGTTTGTTTCTATTTCATTTTCTTATTGGTTTCACAGTGGGTCAAACATCAATATATAAGCTTAATTATGTTTTCAGCTTCTTAAAGTGGATGGACTTGTGTTATGATTTTATAAAGTGAGACATGGTGGAAGTGGTTAGGCATCATTCTAGCAGTTGCATGCATAACTAAAATATGCATACATAATATATACAGGCCCTCACTGGCCCCCAAACTACTGTGTTATGAAGTCATTTTAATCCCAACAAAAATATGCATAACTAAGAACATTAGTAGTTGTATCTCACTTAGAATATAAACTTAATAACAAGCCAACAAAAACAAATTTTGTAGAACCTTCCTAAGTCGCCGTATGAAGTCTTTCTAGTGGGATAAGGCTTGGTTGTTGTTGTTGCTCATAACTTTCCTTGACAACTATAGAATTGGATAACATAATAGTTAATGCAAAGCATTGGGAAAATCACATGAAATTTGTAAAACTTTCTGTGTTATGAAGTCATTTTAATCCATTGTTTTTTGATATTTTGTATGTTGTATTAGATGTTGGAATAGCCTCTGTTCAGTTTTTCAATTTTCTTTTAGCTTAAACTCTATTATTTTGTTGTTGGGCCAGTGTTTGGGCAGAGAGCATCTTGGTGAACTCGGCTCTGCACCTAAAAACCCTGTTAAATGAGTTCTTGAATCTTTAGTACTAATTAGCTTTTACTCTCTTATAGGATTTCTAGATCTCCACATTCACCTGCAGTTTTCAATTCACCTTATCGGTACCACCATAACACTTCTTAACACATTTTCCATCTTGTATATTGGATTGAAATGCTCTAAATGTCGTATTTGCTATCTTTGACAGAGGCTCACCTGCAAGGGCAACCAGTAAATCATTTTCGAATTCCCGAAGTTATTCAAGGTCCGCTTTTGCATATATGCTTACTTAGTTTCGTTTGGCTTTATATGTTCATGTAGCTTTTGTCATTCAGTAGCATAATCTGATGGGTATTAGATGTTCAACTTTGCCTGCTAACGGATCTTTATTTTTCTCCCGCCCCCCTTTTAGCCTTTATTAATGAGTAATATATTGCACATTTAATTTTTATTTGGATTTGTCATTTTGAACTAATGTCAAGTAGTATATGCAGATCTCCAAAGGGTCGAGGGCGTTCCATTTCTTCTGAAAGGATACAGCGGTCTTCACGACGGCAATCTATTTCTCCTCGAAGACGTTCACCACAAAGATCTCCTCATAGGAGGCCATCTTATTCAAGGAGAAGATCTAGATCTAGCTCATCTTCTCCTATCCGACGTGGAATGCATTCTCCATTTCGTCGACGCAGAACACCCTCTCCTGTTAGACGGAGATCGCCCTCTCCAGTGCGACGACGAAGATCACCCTCTCCAGTACGACGACGCAGATCACCACCTTCCCCAGTACGACGACGCAGATCACCACCTTCTCCAGTACGACAACGCAGATCACCTTATCCTGCACGGAGACGCAGATCTCCCTCTCCTGTGCGAAGACGCAGATCACCTTCTCCTATACGACGACGTAGATCACCTTCTCCAATGCACCGACGTAGATCACCATCACCTATTAGACGAAGGTCACCCTCACCCCTGCAACAGAGATCTCCTAGTATGCGGCGCAGGTCACCTTCACCGATGCGTCGAATACCACTAAGCCGTGGACGGAGGTCAAGCTCTCCAATGCAATCCCCCATAATGCGAAGGTATGATAGTAGAACTCCACGGCGCAGGTCTCCATCTCCTTTGCAGCATAGATCACCTGTTTCGGGCAAGAAAAGATCTGCAAGTGCCTCCCCTAAGAGGTCTCCTTCTCATGATGAATGGAGTTCTCAGTCTCCTGCACGTGTATCTCCATCTCCAGTCAGAAGGAGAACTTCACCAAGACTCCAAAGAAGTCCTGTGCAGTCTTCTATGGGAAGAGTCAGGTACAGTGACACTTGAGGGAATGCTTGAATAAGTTTGTTTGATTTTTCTTTGGTGTGCATGATTTTAATGTGATGATACGAAAACTTTTAAAAATGAAATATTTTAAATTTTTATTTTATTCAATTTTGAAGTAGGCTTATAGTTTAATAACCAGAATTACTATTATGGTTCCACTCCATATCCTGTTTGGAGCTGTGAAATTTTGCAGAATAATTTTTTAAGGGAAATGTTAACTTGTGCCCTTAAGGCACAAGTTTAGAAGTCAAATGTAGAAACTTATTTTTGGAGATTGTGCATTCAATGTCTTGAAAGGTTAAAAACTTATTTTTTCAATACAACACTTGTGTTTTAATTCTTTTTTTAGATCCTTAACATGACCCATTTTTTAAATAAGGTTTGTTCTTGCAAGAAAATTTGTGAAATCTGTGGTGATACCCATGTTGCAGGGTGCAAAAAATATTGTCACCGGAAGTTTATCAACCCTCTAGTCCTTTGCGGTCTGTACAGAGAGATAAAAATGGCAAAGCTTCAGGCTATAAATCACAAGATTCAATGTCCACACCAGATAAGTCTCCAATCCGATCAATATCACCACAAGCAAGAAGTAAGACCAGCAGTAAAAATAGAAGGTAACTTTCCTTGACTTCTCATACAACTCTTTTATCTGCTCATGGTTACCTGCCTGCCTGCAGTAGTTAGTTTATGCATATTTATTTTGGCTTTTGAAAATGTATAGTCCACATGAAATCCCTCTGAGGCAAACAAGAGAGAAATTGACCATTGAAGGAAGCTTGAGTCCCCCAAAGAAGCCAACAGACCATAAACCTAGCCATGACATCCCAGAGACGAGTGAAGGAGCAGAAGAAGCAAATTATTCTAGGTTTGAATACGAATTGGATAGCTTTCATTTACTTCTTTTAAATATACGAAATGTAAATCACTGTCATTGATTTGTTTATTGTTTTGCTTGCTTCTTTTTTTCTTTTTTTCTTCTTCCTATTTCTCTTGTAGAGAGCGCAGAGATCCTAAATCAAATTCATCTGAAAAGAAATCAAGACACTCCCCAGTTAGTAAGCGAATAGGTTCATCTGCCAAATTTCATCACGAGGATGAGTTTTATCCTGAAAGGGCAGCTAGTCATCTGGCTTCTGATTCTAAGCATTATGATAATAATGAAAGGAATAAGAAAGGCCAGGATATAAAATGGTAATATGATTGGCATACTGCACTTGTTCTAACTAGTTTGAATGACTTCACACTGTACATCTCTGATAATGGTAAACTCCTTTGGCAGTGATAAATCTTCTGGCAAGGGAGGCGAGTCTCCTGGTCAACAGAAGTCACCAGTGAACAAGGAGTTTTTTTCTGGCGAGAAGCCTCGCGATTCTTATGCTGCAGAAACAAAAAAAACTGATGACAAGGATCAATTCAATTCAAAATATGCCAAAAGTAGTGATCAGCACCACAAATCAGAAGGCACTCAAGATTTAGTTGGAAAAGTTGATCACATCAATCAGAGTGCTTCTTATGATTCTGTTTCTGAAGAAAGTGGCAAGCATAGAAGGGATGGAAAGGATAGGAGAAAGCATAAAAGGTCAGAGAGAAAAGTTGTTTCTTCTGATGAGAATGATAGTTATGATTCTGAGTTAGAAGACAGGAAAGAGGCCAAGAGGAGGAAAAAGGAGGAGAAGAAGAAGCTGCGAAAGGAGGAGAAGCATCGAAAGCGGGAAGAGAGACGGCGAAAAAGGGAAGAGCGGCATGCTGAAAAGCTGAAAATGAAGAGTAAACCAGGCTATATTTCAGACGATGAGGAAGCTGAACGAAGGGATGGTCACCAAAGTGATGATGAAGAACCATACGATCCAAAGAAGCTTGAGATTGAGCTGCGTAATAAGGCTCTTGAGTCCCTCAAAGCAAAGAAGAGCATGAATAATTAA
Protein sequence

>MS.gene003999.t1

MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELLGFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGGLDAKDNDAASDPTLKSRDSGHYIQDGKQTDRNGVRARNRISRSPHSPAVFNSPYRGSPARATSKSFSNSRSYSRSPKGRGRSISSERIQRSSRRQSISPRRRSPQRSPHRRPSYSRRRSRSSSSSPIRRGMHSPFRRRRTPSPVRRRSPSPVRRRRSPSPVRRRRSPPSPVRRRRSPPSPVRQRRSPYPARRRRSPSPVRRRRSPSPIRRRRSPSPMHRRRSPSPIRRRSPSPLQQRSPSMRRRSPSPMRRIPLSRGRRSSSPMQSPIMRRYDSRTPRRRSPSPLQHRSPVSGKKRSASASPKRSPSHDEWSSQSPARVSPSPVRRRTSPRLQRSPVQSSMGRVRVQKILSPEVYQPSSPLRSVQRDKNGKASGYKSQDSMSTPDKSPIRSISPQARSKTSSKNRSPHEIPLRQTREKLTIEGSLSPPKKPTDHKPSHDIPETSEGAEEANYSRERRDPKSNSSEKKSRHSPVSKRIGSSAKFHHEDEFYPERAASHLASDSKHYDNNERNKKGQDIKCDKSSGKGGESPGQQKSPVNKEFFSGEKPRDSYAAETKKTDDKDQFNSKYAKSSDQHHKSEGTQDLVGKVDHINQSASYDSVSEESGKHRRDGKDRRKHKRSERKVVSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEKHRKREERRRKREERHAEKLKMKSKPGYISDDEEAERRDGHQSDDEEPYDPKKLEIELRNKALESLKAKKSMNN