AlfalfaGEDB | MS.gene003999

M. sativa cultivar XinJiangDaYe / MS.gene003999

KEGG: K13171
GO: GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016071 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF01480.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003999.t1	XP_003606715.2	94.4	913	34	5	1	898	1	911	1.00E-270	943

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003999.t1	Q52KI8	56.6	143	61	1	1	142	1	143	1.6e-38	162.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003999.t1	G7JCF1	94.4	913	34	5	1	898	1	911	7.5e-271	943.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003999	MS.gene013165	PPI
MS.gene003999	MS.gene06238	PPI
MS.gene003999	MS.gene75866	PPI
MS.gene003999	MS.gene033864	PPI
MS.gene003999	MS.gene22282	PPI
MS.gene003999	MS.gene21685	PPI
MS.gene003999	MS.gene058768	PPI
MS.gene003999	MS.gene024706	PPI
MS.gene003999	MS.gene53233	PPI
MS.gene003999	MS.gene055513	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene003999.t1	MTR_4g064740	91.965	921	41	6	1	898	1	911	1365
MS.gene003999.t1	MTR_4g064740	90.445	921	41	6	1	898	1	897	1330
MS.gene003999.t1	MTR_4g064740	86.478	917	33	6	1	898	1	845	1238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene003999.t1	AT2G29210	58.893	253	94	3	1	252	1	244	2.92e-84	289
MS.gene003999.t1	AT2G29210	58.893	253	94	3	1	252	1	244	3.35e-84	289

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Find 235 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGATCTCCTAGTATG+CGG	0.664203	4.3:-39274166	MS.gene003999:CDS
AACCTATTCGCTTACTAACT+GGG	0.499232	4.3:+39272772	None:intergenic
AAGAAAGTGGCAAGCATAGA+AGG	0.346706	4.3:-39272292	MS.gene003999:CDS
AAGACAGGAAAGAGGCCAAG+AGG	0.640404	4.3:-39272184	MS.gene003999:CDS
AAGACTGCACAGGACTTCTT+TGG	0.314046	4.3:+39273874	None:intergenic
AAGCGGACCTTGAATAACTT+CGG	0.491825	4.3:+39274892	None:intergenic
AAGCTCTTTCATGAACTTAC+CGG	0.392718	4.3:+39276395	None:intergenic
AAGTCCTGTGCAGTCTTCTA+TGG	0.258541	4.3:-39273868	MS.gene003999:CDS
AATAATGAAAGGAATAAGAA+AGG	0.530279	4.3:-39272666	MS.gene003999:CDS
AATACAAATTACTGGATTCA+TGG	0.319893	4.3:-39276427	MS.gene003999:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAAGATCCGTTAGC+AGG	+	chr4.3:39274848-39274867	None:intergenic	30.0%
AATTCAGAGGAAGAAAGATA+AGG	-	chr4.3:39273466-39273485	MS.gene003999:intron	30.0%
ACTTCATAACACAGTAGTTT+GGG	+	chr4.3:39274043-39274062	None:intergenic	30.0%
AGTAAGCATATATGCAAAAG+CGG	+	chr4.3:39274744-39274763	None:intergenic	30.0%
AGTCTTGATTTACCATTCAT+TGG	-	chr4.3:39273343-39273362	MS.gene003999:CDS	30.0%
ATCCAATTCTATAGTTGTCA+AGG	+	chr4.3:39274240-39274259	None:intergenic	30.0%
ATTAATAAAGGCTAAAAGGG+GGG	+	chr4.3:39274877-39274896	None:intergenic	30.0%
ATTCAGTAGCATAATCTGAT+GGG	-	chr4.3:39274803-39274822	MS.gene003999:intron	30.0%
CAGAAGAAGCAAATTATTCT+AGG	-	chr4.3:39276640-39276659	MS.gene003999:intron	30.0%
CATTAATAAAGGCTAAAAGG+GGG	+	chr4.3:39274878-39274897	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	39271920	39277718	39271920	ID=MS.gene003999
chr4.3	mRNA	39271920	39277718	39271920	ID=MS.gene003999.t1;Parent=MS.gene003999
chr4.3	exon	39277698	39277718	39277698	ID=MS.gene003999.t1.exon1;Parent=MS.gene003999.t1
chr4.3	CDS	39277698	39277718	39277698	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39277298	39277387	39277298	ID=MS.gene003999.t1.exon2;Parent=MS.gene003999.t1
chr4.3	CDS	39277298	39277387	39277298	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39276835	39276957	39276835	ID=MS.gene003999.t1.exon3;Parent=MS.gene003999.t1
chr4.3	CDS	39276835	39276957	39276835	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39276305	39276472	39276305	ID=MS.gene003999.t1.exon4;Parent=MS.gene003999.t1
chr4.3	CDS	39276305	39276472	39276305	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39276112	39276198	39276112	ID=MS.gene003999.t1.exon5;Parent=MS.gene003999.t1
chr4.3	CDS	39276112	39276198	39276112	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39275850	39275974	39275850	ID=MS.gene003999.t1.exon6;Parent=MS.gene003999.t1
chr4.3	CDS	39275850	39275974	39275850	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39275043	39275090	39275043	ID=MS.gene003999.t1.exon7;Parent=MS.gene003999.t1
chr4.3	CDS	39275043	39275090	39275043	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39274900	39274956	39274900	ID=MS.gene003999.t1.exon8;Parent=MS.gene003999.t1
chr4.3	CDS	39274900	39274956	39274900	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39273858	39274670	39273858	ID=MS.gene003999.t1.exon9;Parent=MS.gene003999.t1
chr4.3	CDS	39273858	39274670	39273858	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39273228	39273410	39273228	ID=MS.gene003999.t1.exon10;Parent=MS.gene003999.t1
chr4.3	CDS	39273228	39273410	39273228	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39272977	39273120	39272977	ID=MS.gene003999.t1.exon11;Parent=MS.gene003999.t1
chr4.3	CDS	39272977	39273120	39272977	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39272651	39272845	39272651	ID=MS.gene003999.t1.exon12;Parent=MS.gene003999.t1
chr4.3	CDS	39272651	39272845	39272651	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1
chr4.3	exon	39271920	39272562	39271920	ID=MS.gene003999.t1.exon13;Parent=MS.gene003999.t1
chr4.3	CDS	39271920	39272562	39271920	ID=cds.MS.gene003999.t1;Parent=MS.gene003999.t1

Gene Sequence

>MS.gene003999

ATGTCAGGCGGTTTTTTTCGAGTAAGTTCATCGCAAACCGTTGAATTCACCATTTCAATTATTCATTTGCTTTTTGTAATAATGAATTGTTATTTAATCATTTTTCAGATCTTATTTGTGACTTTAATTTGATGAAATTAAGTACTGTATGCTATGAAATTAGGGTTCAAAACTTTGAATATTTGTTGATGAAACTGAATTAAGAGTTGTGTTGTAATTCAACTTGTTATAGTGATTTTTTGGCCTGTTTTTAAATTTTTGTATTCATAATTGAAAAATGTTACTTAGCTAGTTAGCTTATGAAATATAACATGTTGAATTTTGGATGTAGGGTACATCTGCGGATCAAGACACTCGGTTTTCGAACAAGCAAGCGAAGCTGCTTAAGTCACAGAAGTTTGCACCGGAATTGGAGCATCTGGTTTGTTTCCTTGATTGATTAATTTAGATTTGTTGATTTTTTTTATAGGGAGAATTGTCTCTATAGCACCGATACTTTTGATAGCAGACACCGACAAACGTGATTACATTCAATTATGCCATTTTTCCTAATTATTACCGGTGTCAACATGTTAGTGTGGTGTCTGGTGTTCGCGTCTGTGTCAGTGCTTTGTAGAGAACTATTTCCAACTGCTTTTGAAATTTGGAACCTCAAACATCATGGTGTATATGATCTCGATATATTTATTTATTTTAACTAGCGACATCGCTTTCCTCTGCTATTTTTTTGATGTGAGTCGTGCTTGAAAAATGATTTGTAGGTGGACATGACAAAGGTGAATATGGACGTAATGAGGCCTTGGATTACTAGAAAAGTGACCGAGCTTCTTGGGTTTGAAGACGAAGTGCTTATTAACTTCATACATGGTCTTCTGGAAGCGAAGGTAATTTATTGTTTTTGAACTATTTTGGTTATACGGTAATCTTGGAGATTAATGGCGCTTTCAACGTTCTATTTTTTATTTGCTGAATACTTACTTTATCGTTTCTTTATCATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTAAATATTAAATTGTATTTGTTGAAATCAATATAGCATTTATTTCAAACATTATAATCACTTTGATTTTGAGTTGTAACTGTGCAATCTTTTTCCTCTAAATGAACTATCATAGATTTACATGCACTTTCTGATAATGCCATGCTTTTATTTTTTACCTTGCAACATTCGGTTTGTAATGATGCAGAAAGTGAACGGGAAGGAAATTCAAATACAAATTACTGGATTCATGGAAAAAAACACCGGTAAGTTCATGAAAGAGCTTTGGACACTTCTTCTCAGTGCACAGAAAAATGCCAGTGGTGTTCCTCAGCAGTTCTTGGATGCTAAAGAAGAAGAACTCCTGAAAAAGAAGGTTTTTTTAAGTCTTGATTTACCATTCATTGGGTATCAAAATACCTTTTATCCTTGCACTTTTTTTTGGCCTTTCTGATTAAAGTTTTTTACTGTCGATGGATTAGGCTGAAAGCGATAGGATAACAAGTGAAATTCAGAGGAAGAAAGATAAGGAGAGTAAAGATATCATGGAAGAGAGGCTGAAGAAACTGGTAATACTATTTGTTCGTTGCTGGATTACGTTTTATAGGGCTGAGATTTTGGTTTTAACTTCCATTTGTGTTTTCATTGCGCTCAGCTAGCTTCTGCAATTATTTGGGTTCATGTCCTTTACCTCAAACTACTGTAGGACGGAGGATTAGATGCGAAGGATAATGATGCTGCTTCAGATCCAACTTTGAAGTCCAGGGATTCAGGGCACTACATTCAGGATGGAAAACAAACTGACAGGAATGGTGTTAGAGCAAGGAACAGGTAAAATCGGCCGATTCCTTCTTTTTTAATCATTATGTGCCGATGTTTGTTTCTATTTCATTTTCTTATTGGTTTCACAGTGGGTCAAACATCAATATATAAGCTTAATTATGTTTTCAGCTTCTTAAAGTGGATGGACTTGTGTTATGATTTTATAAAGTGAGACATGGTGGAAGTGGTTAGGCATCATTCTAGCAGTTGCATGCATAACTAAAATATGCATACATAATATATACAGGCCCTCACTGGCCCCCAAACTACTGTGTTATGAAGTCATTTTAATCCCAACAAAAATATGCATAACTAAGAACATTAGTAGTTGTATCTCACTTAGAATATAAACTTAATAACAAGCCAACAAAAACAAATTTTGTAGAACCTTCCTAAGTCGCCGTATGAAGTCTTTCTAGTGGGATAAGGCTTGGTTGTTGTTGTTGCTCATAACTTTCCTTGACAACTATAGAATTGGATAACATAATAGTTAATGCAAAGCATTGGGAAAATCACATGAAATTTGTAAAACTTTCTGTGTTATGAAGTCATTTTAATCCATTGTTTTTTGATATTTTGTATGTTGTATTAGATGTTGGAATAGCCTCTGTTCAGTTTTTCAATTTTCTTTTAGCTTAAACTCTATTATTTTGTTGTTGGGCCAGTGTTTGGGCAGAGAGCATCTTGGTGAACTCGGCTCTGCACCTAAAAACCCTGTTAAATGAGTTCTTGAATCTTTAGTACTAATTAGCTTTTACTCTCTTATAGGATTTCTAGATCTCCACATTCACCTGCAGTTTTCAATTCACCTTATCGGTACCACCATAACACTTCTTAACACATTTTCCATCTTGTATATTGGATTGAAATGCTCTAAATGTCGTATTTGCTATCTTTGACAGAGGCTCACCTGCAAGGGCAACCAGTAAATCATTTTCGAATTCCCGAAGTTATTCAAGGTCCGCTTTTGCATATATGCTTACTTAGTTTCGTTTGGCTTTATATGTTCATGTAGCTTTTGTCATTCAGTAGCATAATCTGATGGGTATTAGATGTTCAACTTTGCCTGCTAACGGATCTTTATTTTTCTCCCGCCCCCCTTTTAGCCTTTATTAATGAGTAATATATTGCACATTTAATTTTTATTTGGATTTGTCATTTTGAACTAATGTCAAGTAGTATATGCAGATCTCCAAAGGGTCGAGGGCGTTCCATTTCTTCTGAAAGGATACAGCGGTCTTCACGACGGCAATCTATTTCTCCTCGAAGACGTTCACCACAAAGATCTCCTCATAGGAGGCCATCTTATTCAAGGAGAAGATCTAGATCTAGCTCATCTTCTCCTATCCGACGTGGAATGCATTCTCCATTTCGTCGACGCAGAACACCCTCTCCTGTTAGACGGAGATCGCCCTCTCCAGTGCGACGACGAAGATCACCCTCTCCAGTACGACGACGCAGATCACCACCTTCCCCAGTACGACGACGCAGATCACCACCTTCTCCAGTACGACAACGCAGATCACCTTATCCTGCACGGAGACGCAGATCTCCCTCTCCTGTGCGAAGACGCAGATCACCTTCTCCTATACGACGACGTAGATCACCTTCTCCAATGCACCGACGTAGATCACCATCACCTATTAGACGAAGGTCACCCTCACCCCTGCAACAGAGATCTCCTAGTATGCGGCGCAGGTCACCTTCACCGATGCGTCGAATACCACTAAGCCGTGGACGGAGGTCAAGCTCTCCAATGCAATCCCCCATAATGCGAAGGTATGATAGTAGAACTCCACGGCGCAGGTCTCCATCTCCTTTGCAGCATAGATCACCTGTTTCGGGCAAGAAAAGATCTGCAAGTGCCTCCCCTAAGAGGTCTCCTTCTCATGATGAATGGAGTTCTCAGTCTCCTGCACGTGTATCTCCATCTCCAGTCAGAAGGAGAACTTCACCAAGACTCCAAAGAAGTCCTGTGCAGTCTTCTATGGGAAGAGTCAGGTACAGTGACACTTGAGGGAATGCTTGAATAAGTTTGTTTGATTTTTCTTTGGTGTGCATGATTTTAATGTGATGATACGAAAACTTTTAAAAATGAAATATTTTAAATTTTTATTTTATTCAATTTTGAAGTAGGCTTATAGTTTAATAACCAGAATTACTATTATGGTTCCACTCCATATCCTGTTTGGAGCTGTGAAATTTTGCAGAATAATTTTTTAAGGGAAATGTTAACTTGTGCCCTTAAGGCACAAGTTTAGAAGTCAAATGTAGAAACTTATTTTTGGAGATTGTGCATTCAATGTCTTGAAAGGTTAAAAACTTATTTTTTCAATACAACACTTGTGTTTTAATTCTTTTTTTAGATCCTTAACATGACCCATTTTTTAAATAAGGTTTGTTCTTGCAAGAAAATTTGTGAAATCTGTGGTGATACCCATGTTGCAGGGTGCAAAAAATATTGTCACCGGAAGTTTATCAACCCTCTAGTCCTTTGCGGTCTGTACAGAGAGATAAAAATGGCAAAGCTTCAGGCTATAAATCACAAGATTCAATGTCCACACCAGATAAGTCTCCAATCCGATCAATATCACCACAAGCAAGAAGTAAGACCAGCAGTAAAAATAGAAGGTAACTTTCCTTGACTTCTCATACAACTCTTTTATCTGCTCATGGTTACCTGCCTGCCTGCAGTAGTTAGTTTATGCATATTTATTTTGGCTTTTGAAAATGTATAGTCCACATGAAATCCCTCTGAGGCAAACAAGAGAGAAATTGACCATTGAAGGAAGCTTGAGTCCCCCAAAGAAGCCAACAGACCATAAACCTAGCCATGACATCCCAGAGACGAGTGAAGGAGCAGAAGAAGCAAATTATTCTAGGTTTGAATACGAATTGGATAGCTTTCATTTACTTCTTTTAAATATACGAAATGTAAATCACTGTCATTGATTTGTTTATTGTTTTGCTTGCTTCTTTTTTTCTTTTTTTCTTCTTCCTATTTCTCTTGTAGAGAGCGCAGAGATCCTAAATCAAATTCATCTGAAAAGAAATCAAGACACTCCCCAGTTAGTAAGCGAATAGGTTCATCTGCCAAATTTCATCACGAGGATGAGTTTTATCCTGAAAGGGCAGCTAGTCATCTGGCTTCTGATTCTAAGCATTATGATAATAATGAAAGGAATAAGAAAGGCCAGGATATAAAATGGTAATATGATTGGCATACTGCACTTGTTCTAACTAGTTTGAATGACTTCACACTGTACATCTCTGATAATGGTAAACTCCTTTGGCAGTGATAAATCTTCTGGCAAGGGAGGCGAGTCTCCTGGTCAACAGAAGTCACCAGTGAACAAGGAGTTTTTTTCTGGCGAGAAGCCTCGCGATTCTTATGCTGCAGAAACAAAAAAAACTGATGACAAGGATCAATTCAATTCAAAATATGCCAAAAGTAGTGATCAGCACCACAAATCAGAAGGCACTCAAGATTTAGTTGGAAAAGTTGATCACATCAATCAGAGTGCTTCTTATGATTCTGTTTCTGAAGAAAGTGGCAAGCATAGAAGGGATGGAAAGGATAGGAGAAAGCATAAAAGGTCAGAGAGAAAAGTTGTTTCTTCTGATGAGAATGATAGTTATGATTCTGAGTTAGAAGACAGGAAAGAGGCCAAGAGGAGGAAAAAGGAGGAGAAGAAGAAGCTGCGAAAGGAGGAGAAGCATCGAAAGCGGGAAGAGAGACGGCGAAAAAGGGAAGAGCGGCATGCTGAAAAGCTGAAAATGAAGAGTAAACCAGGCTATATTTCAGACGATGAGGAAGCTGAACGAAGGGATGGTCACCAAAGTGATGATGAAGAACCATACGATCCAAAGAAGCTTGAGATTGAGCTGCGTAATAAGGCTCTTGAGTCCCTCAAAGCAAAGAAGAGCATGAATAATTAA

Protein sequence

>MS.gene003999.t1

MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMTKVNMDVMRPWITRKVTELLGFEDEVLINFIHGLLEAKKVNGKEIQIQITGFMEKNTGKFMKELWTLLLSAQKNASGVPQQFLDAKEEELLKKKAESDRITSEIQRKKDKESKDIMEERLKKLDGGLDAKDNDAASDPTLKSRDSGHYIQDGKQTDRNGVRARNRISRSPHSPAVFNSPYRGSPARATSKSFSNSRSYSRSPKGRGRSISSERIQRSSRRQSISPRRRSPQRSPHRRPSYSRRRSRSSSSSPIRRGMHSPFRRRRTPSPVRRRSPSPVRRRRSPSPVRRRRSPPSPVRRRRSPPSPVRQRRSPYPARRRRSPSPVRRRRSPSPIRRRRSPSPMHRRRSPSPIRRRSPSPLQQRSPSMRRRSPSPMRRIPLSRGRRSSSPMQSPIMRRYDSRTPRRRSPSPLQHRSPVSGKKRSASASPKRSPSHDEWSSQSPARVSPSPVRRRTSPRLQRSPVQSSMGRVRVQKILSPEVYQPSSPLRSVQRDKNGKASGYKSQDSMSTPDKSPIRSISPQARSKTSSKNRSPHEIPLRQTREKLTIEGSLSPPKKPTDHKPSHDIPETSEGAEEANYSRERRDPKSNSSEKKSRHSPVSKRIGSSAKFHHEDEFYPERAASHLASDSKHYDNNERNKKGQDIKCDKSSGKGGESPGQQKSPVNKEFFSGEKPRDSYAAETKKTDDKDQFNSKYAKSSDQHHKSEGTQDLVGKVDHINQSASYDSVSEESGKHRRDGKDRRKHKRSERKVVSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEKHRKREERRRKREERHAEKLKMKSKPGYISDDEEAERRDGHQSDDEEPYDPKKLEIELRNKALESLKAKKSMNN